Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141600 | PNX57160.1 | 69.231 | 104 | 30 | 1 | 35 | 138 | 20 | 121 | 5.28e-42 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141600 | A0A2K3JT08 | 69.231 | 104 | 30 | 1 | 35 | 138 | 20 | 121 | 2.52e-42 | 146 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0141600 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0141600 | 0.838370 | 2.994271e-57 | -8.615850e-47 |
| Msa0005050 | Msa0141600 | 0.840343 | 9.208286e-58 | -8.615850e-47 |
| Msa0016120 | Msa0141600 | 0.858782 | 6.502472e-63 | -8.615850e-47 |
| Msa0022640 | Msa0141600 | 0.832683 | 8.217479e-56 | -8.615850e-47 |
| Msa0036430 | Msa0141600 | 0.813435 | 2.563252e-51 | -8.615850e-47 |
| Msa0050040 | Msa0141600 | 0.814930 | 1.198476e-51 | -8.615850e-47 |
| Msa0053110 | Msa0141600 | 0.846673 | 1.873423e-59 | -8.615850e-47 |
| Msa0072810 | Msa0141600 | 0.807401 | 5.145657e-50 | -8.615850e-47 |
| Msa0084500 | Msa0141600 | 0.819178 | 1.330927e-52 | -8.615850e-47 |
| Msa0090590 | Msa0141600 | 0.804880 | 1.747149e-49 | -8.615850e-47 |
| Msa0098440 | Msa0141600 | 0.852670 | 3.962779e-61 | -8.615850e-47 |
| Msa0102990 | Msa0141600 | 0.815537 | 8.785156e-52 | -8.615850e-47 |
| Msa0103000 | Msa0141600 | 0.817407 | 3.351850e-52 | -8.615850e-47 |
| Msa0106790 | Msa0141600 | 0.819708 | 1.007922e-52 | -8.615850e-47 |
| Msa0109880 | Msa0141600 | 0.835215 | 1.910396e-56 | -8.615850e-47 |
| Msa0110970 | Msa0141600 | 0.820979 | 5.152371e-53 | -8.615850e-47 |
| Msa0118400 | Msa0141600 | 0.839935 | 1.176606e-57 | -8.615850e-47 |
| Msa0124340 | Msa0141600 | 0.801025 | 1.093827e-48 | -8.615850e-47 |
| Msa0130570 | Msa0141600 | 0.822039 | 2.931142e-53 | -8.615850e-47 |
| Msa0141600 | Msa0147560 | 0.818938 | 1.509799e-52 | -8.615850e-47 |
| Msa0141600 | Msa0153420 | 0.824709 | 6.968221e-54 | -8.615850e-47 |
| Msa0141600 | Msa0161680 | 0.837068 | 6.462840e-57 | -8.615850e-47 |
| Msa0141600 | Msa0176470 | 0.819179 | 1.330186e-52 | -8.615850e-47 |
| Msa0141600 | Msa0183830 | 0.801891 | 7.269752e-49 | -8.615850e-47 |
| Msa0141600 | Msa0203030 | 0.835580 | 1.545256e-56 | -8.615850e-47 |
| Msa0141600 | Msa0203160 | 0.815311 | 9.863927e-52 | -8.615850e-47 |
| Msa0141600 | Msa0212150 | 0.817942 | 2.538049e-52 | -8.615850e-47 |
| Msa0141600 | Msa0219190 | 0.852604 | 4.139040e-61 | -8.615850e-47 |
| Msa0141600 | Msa0219310 | 0.804911 | 1.720926e-49 | -8.615850e-47 |
| Msa0141600 | Msa0238890 | 0.814074 | 1.854415e-51 | -8.615850e-47 |
| Msa0141600 | Msa0252770 | 0.802959 | 4.380607e-49 | -8.615850e-47 |
| Msa0141600 | Msa0262930 | 0.806365 | 8.521504e-50 | -8.615850e-47 |
| Msa0141600 | Msa0298240 | 0.851615 | 7.905676e-61 | -8.615850e-47 |
| Msa0141600 | Msa0306120 | 0.805181 | 1.510740e-49 | -8.615850e-47 |
| Msa0141600 | Msa0322830 | 0.816633 | 5.001070e-52 | -8.615850e-47 |
| Msa0141600 | Msa0322840 | 0.829509 | 4.945969e-55 | -8.615850e-47 |
| Msa0141600 | Msa0322860 | 0.818461 | 1.936644e-52 | -8.615850e-47 |
| Msa0141600 | Msa0323610 | 0.813266 | 2.791773e-51 | -8.615850e-47 |
| Msa0141600 | Msa0329620 | 0.827720 | 1.338916e-54 | -8.615850e-47 |
| Msa0141600 | Msa0337850 | 0.837590 | 4.751674e-57 | -8.615850e-47 |
| Msa0141600 | Msa0362780 | 0.803523 | 3.347460e-49 | -8.615850e-47 |
| Msa0141600 | Msa0370600 | 0.823175 | 1.595402e-53 | -8.615850e-47 |
| Msa0141600 | Msa0378500 | 0.804232 | 2.384029e-49 | -8.615850e-47 |
| Msa0141600 | Msa0413930 | 0.812697 | 3.720366e-51 | -8.615850e-47 |
| Msa0141600 | Msa0418200 | 0.828788 | 7.397461e-55 | -8.615850e-47 |
| Msa0141600 | Msa0419970 | 0.809725 | 1.641914e-50 | -8.615850e-47 |
| Msa0141600 | Msa0436460 | 0.807955 | 3.926031e-50 | -8.615850e-47 |
| Msa0141600 | Msa0436500 | 0.837488 | 5.047188e-57 | -8.615850e-47 |
| Msa0141600 | Msa0444010 | 0.805236 | 1.471797e-49 | -8.615850e-47 |
| Msa0141600 | Msa0451400 | 0.813321 | 2.715716e-51 | -8.615850e-47 |
| Msa0141600 | Msa0464540 | 0.841680 | 4.102021e-58 | -8.615850e-47 |
| Msa0141600 | Msa0537920 | 0.819990 | 8.688406e-53 | -8.615850e-47 |
| Msa0141600 | Msa0538220 | 0.828809 | 7.313748e-55 | -8.615850e-47 |
| Msa0141600 | Msa0594090 | 0.817753 | 2.800128e-52 | -8.615850e-47 |
| Msa0141600 | Msa0620240 | 0.805461 | 1.320436e-49 | -8.615850e-47 |
| Msa0141600 | Msa0625890 | 0.803313 | 3.700792e-49 | -8.615850e-47 |
| Msa0141600 | Msa0641250 | 0.816075 | 6.664990e-52 | -8.615850e-47 |
| Msa0141600 | Msa0663590 | 0.800458 | 1.427569e-48 | -8.615850e-47 |
| Msa0141600 | Msa0663680 | 0.806683 | 7.303012e-50 | -8.615850e-47 |
| Msa0141600 | Msa0669840 | 0.809888 | 1.514297e-50 | -8.615850e-47 |
| Msa0141600 | Msa0680150 | 0.807438 | 5.054780e-50 | -8.615850e-47 |
| Msa0141600 | Msa0682530 | 0.821972 | 3.038737e-53 | -8.615850e-47 |
| Msa0141600 | Msa0688500 | 0.808661 | 2.775434e-50 | -8.615850e-47 |
| Msa0141600 | Msa0707220 | 0.839266 | 1.755939e-57 | -8.615850e-47 |
| Msa0141600 | Msa0737190 | 0.813412 | 2.593828e-51 | -8.615850e-47 |
| Msa0141600 | Msa0739430 | 0.815491 | 8.998469e-52 | -8.615850e-47 |
| Msa0141600 | Msa0741900 | 0.804524 | 2.073280e-49 | -8.615850e-47 |
| Msa0141600 | Msa0747780 | 0.850758 | 1.380185e-60 | -8.615850e-47 |
| Msa0141600 | Msa0754030 | 0.803089 | 4.117413e-49 | -8.615850e-47 |
| Msa0141600 | Msa0761580 | 0.810462 | 1.139165e-50 | -8.615850e-47 |
| Msa0141600 | Msa0778930 | 0.819134 | 1.362486e-52 | -8.615850e-47 |
| Msa0141600 | Msa0807110 | 0.811244 | 7.715592e-51 | -8.615850e-47 |
| Msa0141600 | Msa0822990 | 0.801149 | 1.032000e-48 | -8.615850e-47 |
| Msa0141600 | Msa0823400 | 0.800873 | 1.174921e-48 | -8.615850e-47 |
| Msa0141600 | Msa0828830 | 0.813772 | 2.161633e-51 | -8.615850e-47 |
| Msa0141600 | Msa0833040 | 0.818336 | 2.067305e-52 | -8.615850e-47 |
| Msa0141600 | Msa0862100 | 0.814820 | 1.268274e-51 | -8.615850e-47 |
| Msa0141600 | Msa0867350 | 0.826108 | 3.249931e-54 | -8.615850e-47 |
| Msa0141600 | Msa0872310 | 0.812539 | 4.030333e-51 | -8.615850e-47 |
| Msa0141600 | Msa0873190 | 0.800637 | 1.312865e-48 | -8.615850e-47 |
| Msa0141600 | Msa0880440 | 0.801619 | 8.265336e-49 | -8.615850e-47 |
| Msa0141600 | Msa0885060 | 0.837743 | 4.341295e-57 | -8.615850e-47 |
| Msa0141600 | Msa0898730 | 0.818036 | 2.417180e-52 | -8.615850e-47 |
| Msa0141600 | Msa0905550 | 0.813879 | 2.046975e-51 | -8.615850e-47 |
| Msa0141600 | Msa0911990 | 0.822236 | 2.638358e-53 | -8.615850e-47 |
| Msa0141600 | Msa0930780 | 0.800092 | 1.695190e-48 | -8.615850e-47 |
| Msa0141600 | Msa0937550 | 0.808179 | 3.517473e-50 | -8.615850e-47 |
| Msa0141600 | Msa0938430 | 0.811516 | 6.733944e-51 | -8.615850e-47 |
| Msa0141600 | Msa0973250 | 0.803956 | 2.721849e-49 | -8.615850e-47 |
| Msa0141600 | Msa0999300 | 0.816968 | 4.207087e-52 | -8.615850e-47 |
| Msa0141600 | Msa0999360 | 0.817653 | 2.949725e-52 | -8.615850e-47 |
| Msa0141600 | Msa0999410 | 0.803382 | 3.580915e-49 | -8.615850e-47 |
| Msa0141600 | Msa1033560 | 0.805866 | 1.085675e-49 | -8.615850e-47 |
| Msa0141600 | Msa1034680 | 0.803462 | 3.446353e-49 | -8.615850e-47 |
| Msa0141600 | Msa1041530 | 0.837576 | 4.789889e-57 | -8.615850e-47 |
| Msa0141600 | Msa1055260 | 0.807978 | 3.881144e-50 | -8.615850e-47 |
| Msa0141600 | Msa1055280 | 0.807086 | 6.001492e-50 | -8.615850e-47 |
| Msa0141600 | Msa1081570 | 0.834573 | 2.771598e-56 | -8.615850e-47 |
| Msa0141600 | Msa1123880 | 0.807681 | 4.488374e-50 | -8.615850e-47 |
| Msa0141600 | Msa1127140 | 0.841445 | 4.731148e-58 | -8.615850e-47 |
| Msa0141600 | Msa1133000 | 0.805906 | 1.064377e-49 | -8.615850e-47 |
| Msa0141600 | Msa1145020 | 0.838356 | 3.020044e-57 | -8.615850e-47 |
| Msa0141600 | Msa1166400 | 0.834140 | 3.560336e-56 | -8.615850e-47 |
| Msa0141600 | Msa1176160 | 0.826158 | 3.162661e-54 | -8.615850e-47 |
| Msa0141600 | Msa1179280 | 0.811409 | 7.103667e-51 | -8.615850e-47 |
| Msa0141600 | Msa1201110 | 0.810651 | 1.036986e-50 | -8.615850e-47 |
| Msa0141600 | Msa1228190 | 0.809698 | 1.663446e-50 | -8.615850e-47 |
| Msa0141600 | Msa1228610 | 0.825994 | 3.460298e-54 | -8.615850e-47 |
| Msa0141600 | Msa1228980 | 0.804052 | 2.599158e-49 | -8.615850e-47 |
| Msa0141600 | Msa1233560 | 0.826175 | 3.133991e-54 | -8.615850e-47 |
| Msa0141600 | Msa1271260 | 0.825071 | 5.724509e-54 | -8.615850e-47 |
| Msa0141600 | Msa1305510 | 0.824892 | 6.310474e-54 | -8.615850e-47 |
| Msa0141600 | Msa1307190 | 0.813637 | 2.314483e-51 | -8.615850e-47 |
| Msa0141600 | Msa1313970 | 0.801993 | 6.927117e-49 | -8.615850e-47 |
| Msa0141600 | Msa1355400 | 0.828986 | 6.625765e-55 | -8.615850e-47 |
| Msa0141600 | Msa1379970 | 0.800174 | 1.631168e-48 | -8.615850e-47 |
| Msa0141600 | Msa1379990 | 0.813885 | 2.040672e-51 | -8.615850e-47 |
| Msa0141600 | Msa1408870 | 0.812010 | 5.255442e-51 | -8.615850e-47 |
| Msa0141600 | Msa1414930 | 0.807356 | 5.260305e-50 | -8.615850e-47 |
| Msa0141600 | Msa1420060 | 0.864202 | 1.441038e-64 | -8.615850e-47 |
| Msa0141600 | Msa1421550 | 0.828119 | 1.073194e-54 | -8.615850e-47 |
| Msa0141600 | Msa1424690 | 0.823928 | 1.063388e-53 | -8.615850e-47 |
| Msa0141600 | Msa1429420 | 0.801446 | 8.970487e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0141600 | MtrunA17_Chr6g0476171 | 83.133 | 83 | 11 | 2 | 56 | 138 | 166 | 245 | 4.62e-43 | 142 |
| Msa0141600 | MtrunA17_Chr1g0163131 | 34.518 | 197 | 64 | 5 | 1 | 138 | 116 | 306 | 8.08e-23 | 91.7 |
| Msa0141600 | MtrunA17_Chr1g0163161 | 68.421 | 57 | 17 | 1 | 1 | 57 | 71 | 126 | 9.61e-18 | 74.7 |
| Msa0141600 | MtrunA17_Chr1g0163101 | 73.684 | 57 | 12 | 1 | 1 | 57 | 115 | 168 | 1.04e-17 | 75.9 |
| Msa0141600 | MtrunA17_Chr1g0163111 | 46.429 | 84 | 39 | 4 | 56 | 138 | 150 | 228 | 1.02e-16 | 74.3 |
| Msa0141600 | MtrunA17_Chr1g0162161 | 64.912 | 57 | 19 | 1 | 1 | 57 | 86 | 141 | 1.60e-15 | 69.7 |
| Msa0141600 | MtrunA17_Chr1g0163201 | 47.500 | 80 | 34 | 3 | 60 | 137 | 318 | 391 | 1.11e-14 | 70.1 |
| Msa0141600 | MtrunA17_Chr1g0163151 | 41.176 | 85 | 46 | 2 | 54 | 138 | 141 | 221 | 1.14e-14 | 68.6 |
| Msa0141600 | MtrunA17_Chr1g0163181 | 41.772 | 79 | 42 | 2 | 60 | 138 | 355 | 429 | 4.34e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCAAAATCATGTGTTTA+AGG | 0.174852 | 1_3:-76787972 | Msa0141600:CDS |
| CTCTCTTCTTCTTGTTTATA+AGG | 0.183657 | 1_3:+76790153 | None:intergenic |
| TATAATCAATACCTCGATTA+TGG | 0.200198 | 1_3:-76788082 | Msa0141600:CDS |
| TATAAGGTTTGTTAGAATAT+TGG | 0.257906 | 1_3:+76790169 | None:intergenic |
| TATATTTAGTGGAAATTTAG+TGG | 0.337369 | 1_3:-76788146 | Msa0141600:CDS |
| GTTCAAAATCATGTGTTTAA+GGG | 0.356485 | 1_3:-76787971 | Msa0141600:CDS |
| AAGAGGCATAATATATTTAG+TGG | 0.396534 | 1_3:-76788157 | Msa0141600:CDS |
| ATAATCAATACCTCGATTAT+GGG | 0.406179 | 1_3:-76788081 | Msa0141600:CDS |
| ATTTAGTGGAGTTGAGAGTA+GGG | 0.424365 | 1_3:-76788132 | Msa0141600:CDS |
| TCTACTTCCACTTTATATGT+TGG | 0.446750 | 1_3:-76787934 | Msa0141600:CDS |
| CATATAAAGTGGAAGTAGAA+TGG | 0.452565 | 1_3:+76787938 | None:intergenic |
| CTTAACACCGGCATATGTTC+CGG | 0.456767 | 1_3:-76787737 | Msa0141600:three_prime_UTR |
| AATTTAGTGGAGTTGAGAGT+AGG | 0.460589 | 1_3:-76788133 | Msa0141600:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_3:-76788120 | Msa0141600:CDS |
| AATGTATATTTCTAACAGCT+TGG | 0.489472 | 1_3:-76787655 | Msa0141600:three_prime_UTR |
| AGAGAATGCAATGTGAAGAT+TGG | 0.489972 | 1_3:-76788028 | Msa0141600:CDS |
| AGCAAGTTGGCTACTGTTCG+TGG | 0.490379 | 1_3:+76787908 | None:intergenic |
| GGACTGTTCCGCAACAGAAA+AGG | 0.504856 | 1_3:+76787793 | None:intergenic |
| CACTCATGGAGATATTGTTA+AGG | 0.507240 | 1_3:+76787772 | None:intergenic |
| TTACCTCTATTACATCTCAA+TGG | 0.507512 | 1_3:-76790089 | Msa0141600:CDS |
| TGTCCATTGAGATGTAATAG+AGG | 0.520177 | 1_3:+76790086 | None:intergenic |
| TTTAGTGGAGTTGAGAGTAG+GGG | 0.526844 | 1_3:-76788131 | Msa0141600:CDS |
| GATTATGGGTGGTTCAGTAA+AGG | 0.531067 | 1_3:-76788067 | Msa0141600:CDS |
| GTGGTATCCAACATATAAAG+TGG | 0.532421 | 1_3:+76787927 | None:intergenic |
| TGCCTCTTCAACAACTCACT+TGG | 0.544194 | 1_3:+76788172 | None:intergenic |
| AAGTTATTTGAAAAGCAAGT+TGG | 0.547511 | 1_3:+76787895 | None:intergenic |
| TCGGAAACGGTGGTTGGAGA+TGG | 0.549714 | 1_3:+76787820 | None:intergenic |
| ATGGGTGGTTCAGTAAAGGT+TGG | 0.561778 | 1_3:-76788063 | Msa0141600:CDS |
| GGAAGGAACATGGTTTGTAA+AGG | 0.561938 | 1_3:-76788110 | Msa0141600:CDS |
| TGCAATGTGAAGATTGGAGA+TGG | 0.563341 | 1_3:-76788022 | Msa0141600:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.565255 | 1_3:-76788127 | Msa0141600:CDS |
| CAGAAAAGGTAGATCGGAAA+CGG | 0.580330 | 1_3:+76787807 | None:intergenic |
| TTTCTAACAGCTTGGTGTGG+CGG | 0.581096 | 1_3:-76787647 | Msa0141600:three_prime_UTR |
| CCGCAACAGAAAAGGTAGAT+CGG | 0.588847 | 1_3:+76787801 | None:intergenic |
| GGTAGATCGGAAACGGTGGT+TGG | 0.595754 | 1_3:+76787814 | None:intergenic |
| TACCAAGTGAGTTGTTGAAG+AGG | 0.607188 | 1_3:-76788174 | Msa0141600:CDS |
| AAGATTACATAATCTGCAAG+AGG | 0.607262 | 1_3:+76787682 | None:intergenic |
| GATGATGCCGGAACATATGC+CGG | 0.624918 | 1_3:+76787730 | None:intergenic |
| ATCAATACCTCGATTATGGG+TGG | 0.631747 | 1_3:-76788078 | Msa0141600:CDS |
| GCTTCAATATGAGATGATGC+CGG | 0.636447 | 1_3:+76787718 | None:intergenic |
| ATTACATAATCTGCAAGAGG+AGG | 0.640177 | 1_3:+76787685 | None:intergenic |
| TAACAATATCTCCATGAGTG+CGG | 0.659327 | 1_3:-76787769 | Msa0141600:three_prime_UTR |
| TACTGAACCACCCATAATCG+AGG | 0.669762 | 1_3:+76788071 | None:intergenic |
| ATATTTCTAACAGCTTGGTG+TGG | 0.672707 | 1_3:-76787650 | Msa0141600:three_prime_UTR |
| CGGAAAATATCTCTTAACAC+CGG | 0.676621 | 1_3:-76787749 | Msa0141600:three_prime_UTR |
| AAAAGGTAGATCGGAAACGG+TGG | 0.703440 | 1_3:+76787810 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTCTAATCTATAAT+GGG | + | chr1_3:76788852-76788871 | None:intergenic | 10.0% |
| !!! | AAAATGTTTTAGATTCAATT+TGG | + | chr1_3:76788118-76788137 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTAATCTGTAAT+GGG | + | chr1_3:76788709-76788728 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTCTAATCTATAA+TGG | + | chr1_3:76788853-76788872 | None:intergenic | 15.0% |
| !!! | GATTTTAGTCATTATAATAT+TGG | - | chr1_3:76788932-76788951 | Msa0141600:intron | 15.0% |
| !!! | TATAAGGTTTGTTAGAATAT+TGG | + | chr1_3:76787621-76787640 | None:intergenic | 20.0% |
| !! | TTTACTATCATCTGATATAA+TGG | - | chr1_3:76788005-76788024 | Msa0141600:CDS | 20.0% |
| !!! | TTTGGAATTTTTAGAGATTA+TGG | - | chr1_3:76788151-76788170 | Msa0141600:CDS | 20.0% |
| !!! | ATTATTAATATTTGCTGTGA+CGG | - | chr1_3:76788392-76788411 | Msa0141600:intron | 20.0% |
| !! | TGTAAAGTAAAATCGTAAAA+AGG | - | chr1_3:76788657-76788676 | Msa0141600:intron | 20.0% |
| !!! | CTTTTTTTTCTAATCTGTAA+TGG | + | chr1_3:76788710-76788729 | None:intergenic | 20.0% |
| !! | AACACAATACAAAATTTACA+AGG | - | chr1_3:76789009-76789028 | Msa0141600:intron | 20.0% |
| !!! | CTAGGATTAATTTTTTTACA+CGG | - | chr1_3:76789075-76789094 | Msa0141600:intron | 20.0% |
| !!! | ATTAATTTTTTTACACGGAT+TGG | - | chr1_3:76789080-76789099 | Msa0141600:intron | 20.0% |
| !!! | TTTTATAACATCATTAGACA+AGG | - | chr1_3:76789497-76789516 | Msa0141600:intron | 20.0% |
| !! | TATATTTAGTGGAAATTTAG+TGG | - | chr1_3:76789641-76789660 | Msa0141600:intron | 20.0% |
| !!! | AACTTATTTCCAATGTTTTT+TGG | - | chr1_3:76789910-76789929 | Msa0141600:intron | 20.0% |
| !!! | CTTTTAGTTTTTCAATGCAA+AGG | + | chr1_3:76788050-76788069 | None:intergenic | 25.0% |
| !! | TGAATTGGAAAAGATTTTCA+TGG | + | chr1_3:76788091-76788110 | None:intergenic | 25.0% |
| !!! | ATTCAATTTGGCTTTTGAAT+TGG | + | chr1_3:76788106-76788125 | None:intergenic | 25.0% |
| !! | CGATTTTACTTTACAGTTAT+TGG | + | chr1_3:76788652-76788671 | None:intergenic | 25.0% |
| !! | CGATTTTACTTTACAGTTAT+TGG | + | chr1_3:76788652-76788671 | None:intergenic | 25.0% |
| ! | ACTAAAATCAACGTTTATAG+AGG | + | chr1_3:76788921-76788940 | None:intergenic | 25.0% |
| ! | TATTCTAGACTATCTTCTAT+TGG | + | chr1_3:76789283-76789302 | None:intergenic | 25.0% |
| ! | CTAGAATATGTGGAAAATTT+AGG | - | chr1_3:76789295-76789314 | Msa0141600:intron | 25.0% |
| !! | AAGAGGCATAATATATTTAG+TGG | - | chr1_3:76789630-76789649 | Msa0141600:intron | 25.0% |
| ! | TATAATCAATACCTCGATTA+TGG | - | chr1_3:76789705-76789724 | Msa0141600:intron | 25.0% |
| ! | ATAATCAATACCTCGATTAT+GGG | - | chr1_3:76789706-76789725 | Msa0141600:intron | 25.0% |
| ! | TGTTCAAAATCATGTGTTTA+AGG | - | chr1_3:76789815-76789834 | Msa0141600:intron | 25.0% |
| ! | GTTCAAAATCATGTGTTTAA+GGG | - | chr1_3:76789816-76789835 | Msa0141600:intron | 25.0% |
| ! | AAGTTATTTGAAAAGCAAGT+TGG | + | chr1_3:76789895-76789914 | None:intergenic | 25.0% |
| !!! | TATTTCCAATGTTTTTTGGT+CGG | - | chr1_3:76789914-76789933 | Msa0141600:intron | 25.0% |
| !! | AATGTATATTTCTAACAGCT+TGG | - | chr1_3:76790132-76790151 | Msa0141600:CDS | 25.0% |
| ! | CTCTCTTCTTCTTGTTTATA+AGG | + | chr1_3:76787637-76787656 | None:intergenic | 30.0% |
| TTACCTCTATTACATCTCAA+TGG | - | chr1_3:76787698-76787717 | Msa0141600:three_prime_UTR | 30.0% | |
| ! | TTGTCAAGTGACTTTTTGTT+GGG | + | chr1_3:76787761-76787780 | None:intergenic | 30.0% |
| ! | TTTGTCAAGTGACTTTTTGT+TGG | + | chr1_3:76787762-76787781 | None:intergenic | 30.0% |
| !! | TAGTTTTTCAATGCAAAGGA+TGG | + | chr1_3:76788046-76788065 | None:intergenic | 30.0% |
| TTTAGAGAAAGAGTTTGATG+CGG | - | chr1_3:76788175-76788194 | Msa0141600:CDS | 30.0% | |
| AACATGAATCTGAAAATCGT+TGG | - | chr1_3:76788447-76788466 | Msa0141600:intron | 30.0% | |
| ! | TTCATCACGAGTTTTTATCA+CGG | + | chr1_3:76788591-76788610 | None:intergenic | 30.0% |
| GTTGTGGATATTGTATATTG+TGG | - | chr1_3:76788623-76788642 | Msa0141600:intron | 30.0% | |
| !! | CTAATCTATAATGGGTTAAC+TGG | + | chr1_3:76788844-76788863 | None:intergenic | 30.0% |
| !! | TTTTTAATTGAGTGCGTTGA+CGG | - | chr1_3:76788737-76788756 | Msa0141600:intron | 30.0% |
| TAATGAGTGACGTATTTACT+AGG | - | chr1_3:76789057-76789076 | Msa0141600:intron | 30.0% | |
| CAAAAAGTAATATGTTTGCG+AGG | - | chr1_3:76789106-76789125 | Msa0141600:intron | 30.0% | |
| ! | AGAAGATAGTCTAGAATATG+TGG | - | chr1_3:76789285-76789304 | Msa0141600:intron | 30.0% |
| TATGTGGAAAATTTAGGAGA+AGG | - | chr1_3:76789301-76789320 | Msa0141600:intron | 30.0% | |
| AACATCTCATGTAAATTCGT+CGG | + | chr1_3:76789471-76789490 | None:intergenic | 30.0% | |
| GAATTTACATGAGATGTTGA+AGG | - | chr1_3:76789473-76789492 | Msa0141600:intron | 30.0% | |
| CAAACACATAGCTATATACA+TGG | + | chr1_3:76789547-76789566 | None:intergenic | 30.0% | |
| CATATAAAGTGGAAGTAGAA+TGG | + | chr1_3:76789852-76789871 | None:intergenic | 30.0% | |
| TCTACTTCCACTTTATATGT+TGG | - | chr1_3:76789853-76789872 | Msa0141600:intron | 30.0% | |
| TAAAACCGACCAAAAAACAT+TGG | + | chr1_3:76789922-76789941 | None:intergenic | 30.0% | |
| AAGATTACATAATCTGCAAG+AGG | + | chr1_3:76790108-76790127 | None:intergenic | 30.0% | |
| TGTCCATTGAGATGTAATAG+AGG | + | chr1_3:76787704-76787723 | None:intergenic | 35.0% | |
| TTGTCAATATTTGTCCCTTG+AGG | - | chr1_3:76787850-76787869 | Msa0141600:three_prime_UTR | 35.0% | |
| ! | ATTTTGCACTCAGACTCATT+TGG | - | chr1_3:76788133-76788152 | Msa0141600:CDS | 35.0% |
| AAGGGCAAAAATGTTCATTC+AGG | - | chr1_3:76788256-76788275 | Msa0141600:intron | 35.0% | |
| ! | CGATTTTCAGATTCATGTTC+TGG | + | chr1_3:76788446-76788465 | None:intergenic | 35.0% |
| ! | GAAGTTGTTATTAGTTCCAC+TGG | + | chr1_3:76788485-76788504 | None:intergenic | 35.0% |
| CGAACTCTATTCTATTGCAT+AGG | - | chr1_3:76788536-76788555 | Msa0141600:intron | 35.0% | |
| GTGATAAAAACTCGTGATGA+AGG | - | chr1_3:76788590-76788609 | Msa0141600:intron | 35.0% | |
| TCGTGATGAAGGATAATAGT+GGG | - | chr1_3:76788601-76788620 | Msa0141600:intron | 35.0% | |
| !! | CTAATCTGTAATGGGTTAAC+TGG | + | chr1_3:76788701-76788720 | None:intergenic | 35.0% |
| CACAATATACAGGAATGCTA+AGG | + | chr1_3:76788768-76788787 | None:intergenic | 35.0% | |
| CTTAGCATTCCTGTATATTG+TGG | - | chr1_3:76788766-76788785 | Msa0141600:intron | 35.0% | |
| TATTGGTCACCACAATATAC+AGG | + | chr1_3:76788635-76788654 | None:intergenic | 35.0% | |
| ACGTTTATAGAGGAATGCTA+AGG | + | chr1_3:76788911-76788930 | None:intergenic | 35.0% | |
| TCTGTTCTTAAATATGCAGC+TGG | - | chr1_3:76789584-76789603 | Msa0141600:intron | 35.0% | |
| AATTTAGTGGAGTTGAGAGT+AGG | - | chr1_3:76789654-76789673 | Msa0141600:intron | 35.0% | |
| ATTTAGTGGAGTTGAGAGTA+GGG | - | chr1_3:76789655-76789674 | Msa0141600:intron | 35.0% | |
| AGAGAATGCAATGTGAAGAT+TGG | - | chr1_3:76789759-76789778 | Msa0141600:intron | 35.0% | |
| GTGGTATCCAACATATAAAG+TGG | + | chr1_3:76789863-76789882 | None:intergenic | 35.0% | |
| CACTCATGGAGATATTGTTA+AGG | + | chr1_3:76790018-76790037 | None:intergenic | 35.0% | |
| TAACAATATCTCCATGAGTG+CGG | - | chr1_3:76790018-76790037 | Msa0141600:intron | 35.0% | |
| CGGAAAATATCTCTTAACAC+CGG | - | chr1_3:76790038-76790057 | Msa0141600:intron | 35.0% | |
| ATTACATAATCTGCAAGAGG+AGG | + | chr1_3:76790105-76790124 | None:intergenic | 35.0% | |
| ! | ATATTTCTAACAGCTTGGTG+TGG | - | chr1_3:76790137-76790156 | Msa0141600:CDS | 35.0% |
| !!! | CGACTCTTGTTCTGATTTTT+TGG | - | chr1_3:76790164-76790183 | Msa0141600:CDS | 35.0% |
| !!! | CTCTTGTTCTGATTTTTTGG+TGG | - | chr1_3:76790167-76790186 | Msa0141600:CDS | 35.0% |
| ACTTATCTCAGACATTCTGC+TGG | - | chr1_3:76787803-76787822 | Msa0141600:three_prime_UTR | 40.0% | |
| CTTATCTCAGACATTCTGCT+GGG | - | chr1_3:76787804-76787823 | Msa0141600:three_prime_UTR | 40.0% | |
| CTACTTATGCTACACCTCAA+GGG | + | chr1_3:76787867-76787886 | None:intergenic | 40.0% | |
| ACTACTTATGCTACACCTCA+AGG | + | chr1_3:76787868-76787887 | None:intergenic | 40.0% | |
| AAGATGAAAAGACGAAGACC+TGG | - | chr1_3:76788198-76788217 | Msa0141600:intron | 40.0% | |
| AGATGAAAAGACGAAGACCT+GGG | - | chr1_3:76788199-76788218 | Msa0141600:intron | 40.0% | |
| GTGAAATGGTATATTTGCCC+AGG | + | chr1_3:76788219-76788238 | None:intergenic | 40.0% | |
| CAAATATACCATTTCACGCG+TGG | - | chr1_3:76788222-76788241 | Msa0141600:intron | 40.0% | |
| CATAGCACCTATGTGTCAAT+CGG | + | chr1_3:76788319-76788338 | None:intergenic | 40.0% | |
| ATCACGTTTGTTTGATGAGG+TGG | + | chr1_3:76788356-76788375 | None:intergenic | 40.0% | |
| CGAATCACGTTTGTTTGATG+AGG | + | chr1_3:76788359-76788378 | None:intergenic | 40.0% | |
| ! | TTGGACATCAGTTTTTCCAG+TGG | - | chr1_3:76788466-76788485 | Msa0141600:intron | 40.0% |
| TAGAATAGAGTTCGTGAGAC+TGG | + | chr1_3:76788530-76788549 | None:intergenic | 40.0% | |
| CTCGTGATGAAGGATAATAG+TGG | - | chr1_3:76788600-76788619 | Msa0141600:intron | 40.0% | |
| !! | TGAAGGATAATAGTGGGTTG+TGG | - | chr1_3:76788607-76788626 | Msa0141600:intron | 40.0% |
| GTCAGGAAGAAATGACAACA+TGG | + | chr1_3:76789228-76789247 | None:intergenic | 40.0% | |
| ! | GTTGTCATTTCTTCCTGACA+AGG | - | chr1_3:76789229-76789248 | Msa0141600:intron | 40.0% |
| ATTTCTTCCTGACAAGGTTG+TGG | - | chr1_3:76789235-76789254 | Msa0141600:intron | 40.0% | |
| AAGAGCTGCACAAAAACACA+TGG | - | chr1_3:76789330-76789349 | Msa0141600:intron | 40.0% | |
| TACCAAGTGAGTTGTTGAAG+AGG | - | chr1_3:76789613-76789632 | Msa0141600:intron | 40.0% | |
| TTTAGTGGAGTTGAGAGTAG+GGG | - | chr1_3:76789656-76789675 | Msa0141600:intron | 40.0% | |
| ! | GGAAGGAACATGGTTTGTAA+AGG | - | chr1_3:76789677-76789696 | Msa0141600:intron | 40.0% |
| ATCAATACCTCGATTATGGG+TGG | - | chr1_3:76789709-76789728 | Msa0141600:intron | 40.0% | |
| GATTATGGGTGGTTCAGTAA+AGG | - | chr1_3:76789720-76789739 | Msa0141600:intron | 40.0% | |
| TGCAATGTGAAGATTGGAGA+TGG | - | chr1_3:76789765-76789784 | Msa0141600:intron | 40.0% | |
| CAGAAAAGGTAGATCGGAAA+CGG | + | chr1_3:76789983-76790002 | None:intergenic | 40.0% | |
| ! | AGAGATATTTTCCGCACTCA+TGG | + | chr1_3:76790032-76790051 | None:intergenic | 40.0% |
| GCTTCAATATGAGATGATGC+CGG | + | chr1_3:76790072-76790091 | None:intergenic | 40.0% | |
| !!! | TGATTTTTTGGTGGTCTCTC+CGG | - | chr1_3:76790176-76790195 | Msa0141600:CDS | 40.0% |
| ACGCGTGGACTTTCTCATTA+AGG | - | chr1_3:76788237-76788256 | Msa0141600:intron | 45.0% | |
| CGCGTGGACTTTCTCATTAA+GGG | - | chr1_3:76788238-76788257 | Msa0141600:intron | 45.0% | |
| !! | TCAGGTAAGTCTTGCTGTTG+TGG | - | chr1_3:76788274-76788293 | Msa0141600:intron | 45.0% |
| CTATGTGTCAATCGGTGACT+GGG | + | chr1_3:76788311-76788330 | None:intergenic | 45.0% | |
| TTCTTGTCCACAACCTTGTC+AGG | + | chr1_3:76789245-76789264 | None:intergenic | 45.0% | |
| TGCCTCTTCAACAACTCACT+TGG | + | chr1_3:76789618-76789637 | None:intergenic | 45.0% | |
| TACTGAACCACCCATAATCG+AGG | + | chr1_3:76789719-76789738 | None:intergenic | 45.0% | |
| ATGGGTGGTTCAGTAAAGGT+TGG | - | chr1_3:76789724-76789743 | Msa0141600:intron | 45.0% | |
| AAAAGGTAGATCGGAAACGG+TGG | + | chr1_3:76789980-76789999 | None:intergenic | 45.0% | |
| CCGCAACAGAAAAGGTAGAT+CGG | + | chr1_3:76789989-76790008 | None:intergenic | 45.0% | |
| ! | CCGATCTACCTTTTCTGTTG+CGG | - | chr1_3:76789986-76790005 | Msa0141600:intron | 45.0% |
| CTTAACACCGGCATATGTTC+CGG | - | chr1_3:76790050-76790069 | Msa0141600:CDS | 45.0% | |
| !! | TTTCTAACAGCTTGGTGTGG+CGG | - | chr1_3:76790140-76790159 | Msa0141600:CDS | 45.0% |
| !! | AAAAATAAAATTAAGATAAA+TGG | + | chr1_3:76789368-76789387 | None:intergenic | 5.0% |
| GAGAAAGTCCACGCGTGAAA+TGG | + | chr1_3:76788233-76788252 | None:intergenic | 50.0% | |
| CCTATGTGTCAATCGGTGAC+TGG | + | chr1_3:76788312-76788331 | None:intergenic | 50.0% | |
| ! | CCAGTCACCGATTGACACAT+AGG | - | chr1_3:76788309-76788328 | Msa0141600:intron | 50.0% |
| ! | AGTTCGTGAGACTGGCTGAA+AGG | + | chr1_3:76788522-76788541 | None:intergenic | 50.0% |
| TGAGAGTAGGGGAAGGAACA+TGG | - | chr1_3:76789667-76789686 | Msa0141600:intron | 50.0% | |
| ! | AGCAAGTTGGCTACTGTTCG+TGG | + | chr1_3:76789882-76789901 | None:intergenic | 50.0% |
| GGACTGTTCCGCAACAGAAA+AGG | + | chr1_3:76789997-76790016 | None:intergenic | 50.0% | |
| GATGATGCCGGAACATATGC+CGG | + | chr1_3:76790060-76790079 | None:intergenic | 50.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | - | chr1_3:76789660-76789679 | Msa0141600:intron | 55.0% | |
| TCGGAAACGGTGGTTGGAGA+TGG | + | chr1_3:76789970-76789989 | None:intergenic | 55.0% | |
| GGTAGATCGGAAACGGTGGT+TGG | + | chr1_3:76789976-76789995 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 76787601 | 76790208 | 76787601 | ID=Msa0141600;Name=Msa0141600 |
| chr1_3 | mRNA | 76787601 | 76790208 | 76787601 | ID=Msa0141600-mRNA-1;Parent=Msa0141600;Name=Msa0141600-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0.5|1|0|0.5|2|297|158 |
| chr1_3 | exon | 76787601 | 76788206 | 76787601 | ID=Msa0141600-mRNA-1:exon:26767;Parent=Msa0141600-mRNA-1 |
| chr1_3 | exon | 76790041 | 76790208 | 76790041 | ID=Msa0141600-mRNA-1:exon:26766;Parent=Msa0141600-mRNA-1 |
| chr1_3 | CDS | 76790041 | 76790208 | 76790041 | ID=Msa0141600-mRNA-1:cds;Parent=Msa0141600-mRNA-1 |
| chr1_3 | CDS | 76787898 | 76788206 | 76787898 | ID=Msa0141600-mRNA-1:cds;Parent=Msa0141600-mRNA-1 |
| chr1_3 | three_prime_UTR | 76787601 | 76787897 | 76787601 | ID=Msa0141600-mRNA-1:three_prime_utr;Parent=Msa0141600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
