AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1238320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238320 MtrunA17_Chr8g0349351 90.842 404 22 1 1 389 3 406 0.0 743
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238320 AT1G01760.4 54.785 418 147 5 10 388 6 420 4.62e-147 423
Msa1238320 AT1G01760.1 54.785 418 147 5 10 388 6 420 4.62e-147 423
Msa1238320 AT1G01760.3 54.785 418 147 5 10 388 19 433 4.69e-147 424
Msa1238320 AT1G01760.2 57.143 350 123 3 10 335 19 365 1.77e-130 381

Find 153 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGATGTAATGGTCATTT+TGG 0.082198 8_2:+18343116 Msa1238320:five_prime_UTR
AAGAGGATTATTAATTTATT+TGG 0.122248 8_2:-18348163 None:intergenic
CTTATTTATAGAAGTGTTTA+TGG 0.137820 8_2:-18343046 None:intergenic
CCTTGTGGTTTGCCTTTCTT+TGG 0.222697 8_2:-18343332 None:intergenic
TGGACCATTCCTATTTGTTT+TGG 0.243298 8_2:-18346021 None:intergenic
CAACCAGTCTGTTTGGGAAT+TGG 0.249548 8_2:+18348127 Msa1238320:three_prime_UTR
TGAATAATTTAGAAGGAAAA+TGG 0.264591 8_2:-18348538 None:intergenic
GTTGAGTAGCAAGTGATCTT+AGG 0.269492 8_2:+18348620 Msa1238320:three_prime_UTR
AATCCCTCGCCTTGTCTAAA+AGG 0.273636 8_2:-18347920 None:intergenic
AGAAAATCCTTTGGCGTTAC+AGG 0.275061 8_2:-18346846 None:intergenic
CTAATGGGTTGCGCAACTTC+TGG 0.288073 8_2:-18348429 None:intergenic
GCGACAATTATCTGATATTA+AGG 0.298716 8_2:+18343098 Msa1238320:five_prime_UTR
AACCAGTCTGTTTGGGAATT+GGG 0.300162 8_2:+18348128 Msa1238320:three_prime_UTR
CATTTCATAGCCGCTAATTC+AGG 0.305772 8_2:+18346818 Msa1238320:intron
AATGGTTCACATTCATCATT+AGG 0.312543 8_2:+18345287 Msa1238320:CDS
TTCTTCAGAAGGAACAAGTT+TGG 0.322803 8_2:+18343265 Msa1238320:CDS
TTCACGAACCAGTTGCTAAA+AGG 0.324851 8_2:-18347666 None:intergenic
CGGTGAAATTGTTTCTGAAC+TGG 0.325382 8_2:-18348196 None:intergenic
CTAGGTGCAGATTTGCTACT+TGG 0.325562 8_2:-18344951 None:intergenic
TAAAACGAACTAGGATCTAA+TGG 0.326552 8_2:-18348445 None:intergenic
CTATTCAAGATTATGAAATC+TGG 0.329997 8_2:+18348088 Msa1238320:three_prime_UTR
TCCGGTTCAACCAGTCTGTT+TGG 0.333155 8_2:+18348120 Msa1238320:three_prime_UTR
TTAGATAGGTAGTCTATGTT+TGG 0.336494 8_2:-18347981 None:intergenic
TAATTTCCAACCACTTCTTA+AGG 0.344130 8_2:-18345057 None:intergenic
ATTTGAAATATTTGAAGAAT+GGG 0.352820 8_2:-18348353 None:intergenic
CATAAAGACGACTCCGTTGA+TGG 0.355910 8_2:-18347070 None:intergenic
GTTAATAGTCCAAAACAAAT+AGG 0.356775 8_2:+18346012 Msa1238320:intron
TAATCAATGAATAATTTAGA+AGG 0.363095 8_2:-18348545 None:intergenic
ATATGAGAATGTAGCTCATT+TGG 0.364258 8_2:+18348057 Msa1238320:three_prime_UTR
TATGGAAAGTGTGCCTTTAG+AGG 0.366190 8_2:+18345262 Msa1238320:CDS
TCTTCAGAAGGAACAAGTTT+GGG 0.366290 8_2:+18343266 Msa1238320:CDS
CATGAAATACCTTCAGTTCT+CGG 0.371275 8_2:-18347497 None:intergenic
CATTTGAAATATTTGAAGAA+TGG 0.375841 8_2:-18348354 None:intergenic
GTCTATGTTTGGGAGTTAAG+AGG 0.376272 8_2:-18347970 None:intergenic
TGATTTGTACCGGCTATCAT+AGG 0.376819 8_2:+18348575 Msa1238320:three_prime_UTR
CGGACCTGGTTCACTAGAAA+TGG 0.380433 8_2:-18346724 None:intergenic
TTCAAAATGCAAGTCAATAT+TGG 0.383571 8_2:+18348298 Msa1238320:three_prime_UTR
TTCATAATCTTGAATAGAAC+TGG 0.391243 8_2:-18348082 None:intergenic
TTTGTTTGAGAGCATGGTTT+TGG 0.392511 8_2:+18347740 Msa1238320:three_prime_UTR
TACAATTCACTTCCAAAGAA+AGG 0.393457 8_2:+18343320 Msa1238320:CDS
GGAGTTAAGAGGAGAGGGAA+GGG 0.395069 8_2:-18347959 None:intergenic
TTCTGAAGAAGCCATAGATA+TGG 0.398052 8_2:-18343252 None:intergenic
ACTATCCAGTTTGAGGAAAC+AGG 0.403347 8_2:-18347889 None:intergenic
TGGAACGTTGTTGGCATTCA+AGG 0.404026 8_2:+18346105 Msa1238320:CDS
AGGCTATGAACAAATTAGTT+AGG 0.409220 8_2:-18348380 None:intergenic
TAGATAGGTAGTCTATGTTT+GGG 0.409999 8_2:-18347980 None:intergenic
ATATGCTTTCCGCTTTAGAT+AGG 0.410351 8_2:-18347995 None:intergenic
CACTTGCAAAGCCATATCTA+TGG 0.411700 8_2:+18343241 Msa1238320:exon
AAGGTGGTTGCACTTGGAAC+TGG 0.417630 8_2:+18343525 Msa1238320:CDS
GTTTGGGAGTTAAGAGGAGA+GGG 0.419825 8_2:-18347964 None:intergenic
AGGCCGTGAAGTCACTGTTT+TGG 0.420142 8_2:+18343352 Msa1238320:CDS
CCGGTTCAACCAGTCTGTTT+GGG 0.421047 8_2:+18348121 Msa1238320:three_prime_UTR
TCAGATTGCAGAAAATCCTT+TGG 0.428377 8_2:-18346855 None:intergenic
CTTCTCTCTTCTCCTTCCAA+TGG 0.431815 8_2:+18343383 Msa1238320:CDS
CCCAAACAGACTGGTTGAAC+CGG 0.432428 8_2:-18348121 None:intergenic
AAGCAAGGCACGTCTGCAAA+AGG 0.435627 8_2:+18347037 Msa1238320:CDS
ACTCTTGCATGAATTTCAAT+TGG 0.443225 8_2:-18348022 None:intergenic
AGTGTGCCTTTAGAGGAAAA+TGG 0.444142 8_2:+18345269 Msa1238320:CDS
TTGCTAGAAGAGCTTTGATC+AGG 0.445152 8_2:+18343619 Msa1238320:CDS
GGAGGGAAGGAGACCAGGGG+AGG 0.446436 8_2:+18347761 Msa1238320:three_prime_UTR
CACCACGACCTGGCTTCCTC+TGG 0.448691 8_2:-18346041 None:intergenic
TTAAGCTTTGTTTGAGAGCA+TGG 0.454339 8_2:+18347734 Msa1238320:three_prime_UTR
AAAACGAACTAGGATCTAAT+GGG 0.457333 8_2:-18348444 None:intergenic
GGTAAGTAATCTCGTCATCC+AGG 0.458566 8_2:-18347476 None:intergenic
GATATTGATAATATCTCCTC+GGG 0.464842 8_2:+18347790 Msa1238320:three_prime_UTR
TTGGGAATTGGGCATATGTC+CGG 0.466229 8_2:+18348139 Msa1238320:three_prime_UTR
AAGGAACAAGTTTGGGTCAA+AGG 0.469024 8_2:+18343273 Msa1238320:CDS
ATCTGATATTAAGGATGTAA+TGG 0.469046 8_2:+18343107 Msa1238320:five_prime_UTR
CATTCTCATATAACTAAAGT+TGG 0.470222 8_2:-18348045 None:intergenic
TTGAGTAGCAAGTGATCTTA+GGG 0.470466 8_2:+18348621 Msa1238320:three_prime_UTR
ACCGAGAACTGTCATAAAAC+CGG 0.471159 8_2:-18348216 None:intergenic
GGGAGTTAAGAGGAGAGGGA+AGG 0.473890 8_2:-18347960 None:intergenic
AGACGTGCCTTGCTTTCTTC+CGG 0.474107 8_2:-18347029 None:intergenic
GGCTTACATGAAGTCACTCT+TGG 0.479209 8_2:+18347001 Msa1238320:CDS
AATCTCGTCATCCAGGGACT+TGG 0.479429 8_2:-18347469 None:intergenic
CGGCCAAAACAGTGACTTCA+CGG 0.482313 8_2:-18343355 None:intergenic
GAAAATCCTTTGGCGTTACA+GGG 0.492769 8_2:-18346845 None:intergenic
AGCAAGGCACGTCTGCAAAA+GGG 0.492996 8_2:+18347038 Msa1238320:CDS
ATAGCACGTTGGAACGTTGT+TGG 0.493201 8_2:+18346096 Msa1238320:CDS
AGGAACAAGTTTGGGTCAAA+GGG 0.496402 8_2:+18343274 Msa1238320:CDS
GAATTGAAGGTGGTTGCACT+TGG 0.499153 8_2:+18343519 Msa1238320:intron
TCAGATAATTGTCGCGGCGG+CGG 0.503707 8_2:-18343090 None:intergenic
AATATACCTTAAGAAGTGGT+TGG 0.510476 8_2:+18345051 Msa1238320:CDS
AGGATAAACTATCCAGTTTG+AGG 0.511471 8_2:-18347896 None:intergenic
GTAATTGACGAAAGATATAC+AGG 0.512164 8_2:-18346598 None:intergenic
TGTCAGAACAACTAACTGAC+AGG 0.516156 8_2:-18346071 None:intergenic
GGAATGGTCCAGAGGAAGCC+AGG 0.516260 8_2:+18346033 Msa1238320:CDS
GAGCTCGCTTGTCACTCCTA+TGG 0.516266 8_2:+18345244 Msa1238320:CDS
GATTATTAATTTATTTGGAC+CGG 0.516354 8_2:-18348158 None:intergenic
CAGTTCAGAAACAATTTCAC+CGG 0.518589 8_2:+18348197 Msa1238320:three_prime_UTR
TGATATTGATAATATCTCCT+CGG 0.518813 8_2:+18347789 Msa1238320:three_prime_UTR
TGTTTGGGAGTTAAGAGGAG+AGG 0.519825 8_2:-18347965 None:intergenic
GGAACTGGAACAAAGTGTAT+TGG 0.523850 8_2:+18343540 Msa1238320:CDS
GTGTGATCGTATTGTACACT+TGG 0.524916 8_2:+18346684 Msa1238320:CDS
GTCTGTAGAGTGAACTCAAG+TGG 0.532586 8_2:-18343186 None:intergenic
ATATCTATGGCTTCTTCAGA+AGG 0.534371 8_2:+18343254 Msa1238320:exon
GCAAGGCACGTCTGCAAAAG+GGG 0.535784 8_2:+18347039 Msa1238320:CDS
TGATGACAACTTAGCATTCG+AGG 0.535844 8_2:+18345001 Msa1238320:CDS
GAAATCTGGATTGCACCGTC+CGG 0.538599 8_2:+18348102 Msa1238320:three_prime_UTR
TATCTTTCGTCAATTACCGT+TGG 0.538737 8_2:+18346604 Msa1238320:CDS
TCATGAACAACATCACCATA+AGG 0.544819 8_2:-18343579 None:intergenic
CGGAAATATACCTTAAGAAG+TGG 0.546025 8_2:+18345047 Msa1238320:CDS
CTGCTAACAATTTGACATGC+GGG 0.548601 8_2:+18346883 Msa1238320:CDS
GTCCAGAGGAAGCCAGGTCG+TGG 0.550504 8_2:+18346039 Msa1238320:CDS
TTTGAAATATTTGAAGAATG+GGG 0.551388 8_2:-18348352 None:intergenic
CCTCGCCTTGTCTAAAAGGA+AGG 0.556631 8_2:-18347916 None:intergenic
TCTAAAGGCACACTTTCCAT+AGG 0.560390 8_2:-18345260 None:intergenic
TGCCCAATTCCCAAACAGAC+TGG 0.561014 8_2:-18348130 None:intergenic
TTTGGAGGGAAGGAGACCAG+GGG 0.563578 8_2:+18347758 Msa1238320:three_prime_UTR
CAACTGGTTCGTGAAACCAT+TGG 0.563798 8_2:+18347674 Msa1238320:CDS
GGGAATGCCTCGCAGTCCAA+TGG 0.564482 8_2:-18347690 None:intergenic
GGCTGCCCCTGTAACGCCAA+AGG 0.567731 8_2:+18346839 Msa1238320:CDS
AGCAAATCTGCACCTAGCAA+TGG 0.568979 8_2:+18344957 Msa1238320:CDS
ATCTCCATTTCTAGTGAACC+AGG 0.572364 8_2:+18346720 Msa1238320:CDS
GAGGGAAGGAGACCAGGGGA+GGG 0.578081 8_2:+18347762 Msa1238320:three_prime_UTR
ACGAACCAGTTGCTAAAAGG+TGG 0.580680 8_2:-18347663 None:intergenic
TTGACGAAAGATATACAGGT+TGG 0.582340 8_2:-18346594 None:intergenic
ACAGGGGCAGCCTGAATTAG+CGG 0.587039 8_2:-18346828 None:intergenic
TATCACACATAAAACGAACT+AGG 0.587974 8_2:-18348454 None:intergenic
TGAGAAAGAATACCATTGGA+AGG 0.589185 8_2:-18343395 None:intergenic
CACCTAGCAATGGAGCAAAA+CGG 0.594322 8_2:+18344967 Msa1238320:CDS
TGGGTTGCGCAACTTCTGGA+TGG 0.598248 8_2:-18348425 None:intergenic
TAGTCCAAAACAAATAGGAA+TGG 0.601776 8_2:+18346017 Msa1238320:CDS
GAAGTCACTCTTGGAACTAC+CGG 0.604776 8_2:+18347010 Msa1238320:CDS
TTGTTCATAGCCTCGACGCA+TGG 0.606940 8_2:+18348390 Msa1238320:three_prime_UTR
GTAAGTAATCTCGTCATCCA+GGG 0.611221 8_2:-18347475 None:intergenic
GGAACTACCGGAAGAAAGCA+AGG 0.613976 8_2:+18347022 Msa1238320:CDS
AACAAATAGGAATGGTCCAG+AGG 0.615657 8_2:+18346025 Msa1238320:CDS
CATAGACTACCTATCTAAAG+CGG 0.619728 8_2:+18347986 Msa1238320:three_prime_UTR
GATTACTTACCGAGAACTGA+AGG 0.621409 8_2:+18347488 Msa1238320:CDS
TTAGCATTCGAGGTGGACGA+AGG 0.622841 8_2:+18345011 Msa1238320:CDS
AACAGACTGGTTGAACCGGA+CGG 0.629442 8_2:-18348117 None:intergenic
TCTGCTAACAATTTGACATG+CGG 0.629762 8_2:+18346882 Msa1238320:CDS
TAGCATTCGAGGTGGACGAA+GGG 0.630072 8_2:+18345012 Msa1238320:CDS
TCTATATGTTGGAATGAATG+TGG 0.630769 8_2:+18346980 Msa1238320:CDS
TGTGATCGTATTGTACACTT+GGG 0.633897 8_2:+18346685 Msa1238320:CDS
CCAAAGAAAGGCAAACCACA+AGG 0.633918 8_2:+18343332 Msa1238320:CDS
AAAATCCTTTGGCGTTACAG+GGG 0.646244 8_2:-18346844 None:intergenic
ACGAAGGGTGTCTTGACAAG+CGG 0.647388 8_2:+18345027 Msa1238320:CDS
AGGAGAAGAGAGAAGAAAAG+CGG 0.648460 8_2:-18343375 None:intergenic
AGGGTTGTATCACCACGACC+TGG 0.650921 8_2:-18346051 None:intergenic
AGGGGCACTCTATCCATCAA+CGG 0.653075 8_2:+18347057 Msa1238320:CDS
AATGGTATGTGGAAGACCAA+CGG 0.670293 8_2:-18346620 None:intergenic
TTAATATCAGATAATTGTCG+CGG 0.677348 8_2:-18343096 None:intergenic
ACAGTGACTTCACGGCCTTG+TGG 0.679357 8_2:-18343347 None:intergenic
GTCAGAACAACTAACTGACA+GGG 0.687393 8_2:-18346070 None:intergenic
TGGATGTTAAGAATTGAAGG+TGG 0.689459 8_2:+18343509 Msa1238320:intron
CATTCAACTACCATGCGTCG+AGG 0.690442 8_2:-18348400 None:intergenic
ATAAATAAGCCAGAACACAA+CGG 0.704808 8_2:+18343060 Msa1238320:five_prime_UTR
GTGATCGTATTGTACACTTG+GGG 0.715514 8_2:+18346686 Msa1238320:CDS
TGACAACTTAGCATTCGAGG+TGG 0.724731 8_2:+18345004 Msa1238320:CDS
ATATCAGATAATTGTCGCGG+CGG 0.726600 8_2:-18343093 None:intergenic
GTTCTGACAAGATAGCACGT+TGG 0.756353 8_2:+18346085 Msa1238320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTTACTTCAATTT+AGG - chr8_2:18343478-18343497 None:intergenic 10.0%
!!! CTAAAGTTTTATAAAATATA+AGG + chr8_2:18344640-18344659 Msa1238320:intron 10.0%
!!! AAATTTGCTAAAAAAAATAT+TGG + chr8_2:18345749-18345768 Msa1238320:intron 10.0%
!!! ATGTATTATTATTTTGAAAT+GGG - chr8_2:18347714-18347733 None:intergenic 10.0%
!!! AATGTATTATTATTTTGAAA+TGG - chr8_2:18347715-18347734 None:intergenic 10.0%
!! AAAAATTGAAAATTGGTTAA+TGG - chr8_2:18343452-18343471 None:intergenic 15.0%
!! TAGGATTAAAAATTGAAAAT+TGG - chr8_2:18343459-18343478 None:intergenic 15.0%
!!! TAAATTTTAGTGTAAAAATC+AGG + chr8_2:18343853-18343872 Msa1238320:intron 15.0%
!!! AATTTTGACAATAAATTAGA+CGG + chr8_2:18344115-18344134 Msa1238320:intron 15.0%
!! TATGGTTAATGAATATAATA+AGG + chr8_2:18344176-18344195 Msa1238320:intron 15.0%
!! AATCATAGTTAAATTATGTA+CGG - chr8_2:18344225-18344244 None:intergenic 15.0%
!! ATATATACTTGAACATAATT+TGG - chr8_2:18344298-18344317 None:intergenic 15.0%
!!! AAATGTAAAAGTATGTATTA+AGG - chr8_2:18344613-18344632 None:intergenic 15.0%
!!! AAGTTTTATAAAATATAAGG+TGG + chr8_2:18344643-18344662 Msa1238320:intron 15.0%
!! GAAATATTAATAGAATTTGA+AGG + chr8_2:18345396-18345415 Msa1238320:intron 15.0%
!!! TAAAAGTAACAGTTTTAATT+CGG + chr8_2:18346216-18346235 Msa1238320:intron 15.0%
!! TGAAAAAATACATAAAAATC+AGG - chr8_2:18346800-18346819 None:intergenic 15.0%
!!! TGTATTATTATTTTGAAATG+GGG - chr8_2:18347713-18347732 None:intergenic 15.0%
!! AAGAGGATTATTAATTTATT+TGG - chr8_2:18348166-18348185 None:intergenic 15.0%
!!! ATTTGAAATATTTGAAGAAT+GGG - chr8_2:18348356-18348375 None:intergenic 15.0%
!! TAATCAATGAATAATTTAGA+AGG - chr8_2:18348548-18348567 None:intergenic 15.0%
!!! CTTATTTATAGAAGTGTTTA+TGG - chr8_2:18343049-18343068 None:intergenic 20.0%
!! AATTCTTCGTATAATCAATT+TGG + chr8_2:18343691-18343710 Msa1238320:intron 20.0%
!! TTCAAAATCAATATCTATGA+CGG - chr8_2:18343748-18343767 None:intergenic 20.0%
!!! TCATAGATATTGATTTTGAA+TGG + chr8_2:18343748-18343767 Msa1238320:intron 20.0%
!!! AATGCAAATTGATTTATGTT+TGG + chr8_2:18343800-18343819 Msa1238320:intron 20.0%
!!! AAAATTGATTTTGACATGTT+TGG - chr8_2:18343957-18343976 None:intergenic 20.0%
!!! TTCAAGTATATATGATTTTC+AGG + chr8_2:18344305-18344324 Msa1238320:intron 20.0%
!!! GTATACATTTTTCTGTATTT+TGG - chr8_2:18344443-18344462 None:intergenic 20.0%
!!! TAAAAAAGGTTTTTCAATTG+TGG - chr8_2:18344819-18344838 None:intergenic 20.0%
!!! AATAAGCATGGTTTTAAAAA+AGG - chr8_2:18344833-18344852 None:intergenic 20.0%
!! GTTAAATTAATCAATAAGCA+TGG - chr8_2:18344845-18344864 None:intergenic 20.0%
!!! TTTTTTTTTCTATTTACACC+AGG + chr8_2:18344895-18344914 Msa1238320:intron 20.0%
!!! TTTTTTGTGTTTCATTTTGT+AGG + chr8_2:18345206-18345225 Msa1238320:intron 20.0%
!!! AGAATTTGAAGGATTTTTTA+AGG + chr8_2:18345407-18345426 Msa1238320:intron 20.0%
!!! TTTTTTAAGGATGTAAGAAT+AGG + chr8_2:18345420-18345439 Msa1238320:intron 20.0%
!!! TTTTTAAGGATGTAAGAATA+GGG + chr8_2:18345421-18345440 Msa1238320:intron 20.0%
!! TATACATTAGATATCATAGA+GGG + chr8_2:18345783-18345802 Msa1238320:intron 20.0%
!! TTTATGCTAACAATTAAACA+GGG - chr8_2:18347128-18347147 None:intergenic 20.0%
!! ATTTATGCTAACAATTAAAC+AGG - chr8_2:18347129-18347148 None:intergenic 20.0%
!!! GTTTGACTTTATTTTATGTT+TGG - chr8_2:18347204-18347223 None:intergenic 20.0%
!!! TCTCATTTGAGTTTATTTAT+TGG - chr8_2:18347339-18347358 None:intergenic 20.0%
!! GATTATTAATTTATTTGGAC+CGG - chr8_2:18348161-18348180 None:intergenic 20.0%
!!! TTTGAAATATTTGAAGAATG+GGG - chr8_2:18348355-18348374 None:intergenic 20.0%
!!! CATTTGAAATATTTGAAGAA+TGG - chr8_2:18348357-18348376 None:intergenic 20.0%
!!! TATGTTTTATATCTATCTGT+AGG + chr8_2:18348494-18348513 Msa1238320:three_prime_UTR 20.0%
!! TGAATAATTTAGAAGGAAAA+TGG - chr8_2:18348541-18348560 None:intergenic 20.0%
!!! TTAAGAATTTTGATTTGTAC+CGG + chr8_2:18348565-18348584 Msa1238320:three_prime_UTR 20.0%
! TTAATATCAGATAATTGTCG+CGG - chr8_2:18343099-18343118 None:intergenic 25.0%
! ATCTGATATTAAGGATGTAA+TGG + chr8_2:18343107-18343126 Msa1238320:five_prime_UTR 25.0%
! TTGAAAATTGAGAAGAGAAA+GGG - chr8_2:18343426-18343445 None:intergenic 25.0%
! ATTGAAAATTGAGAAGAGAA+AGG - chr8_2:18343427-18343446 None:intergenic 25.0%
!! TTTTGGATGTTAAGAATTGA+AGG + chr8_2:18343506-18343525 Msa1238320:intron 25.0%
!!! CTTTAAGGTAGAATCTATAA+TGG + chr8_2:18343903-18343922 Msa1238320:intron 25.0%
! CTCATTAAGGAATACAAATA+TGG - chr8_2:18344063-18344082 None:intergenic 25.0%
! GCTTGATTATGTTAAATCTA+TGG + chr8_2:18344158-18344177 Msa1238320:intron 25.0%
!!! TTTTCTGTATTTTGGAATCA+TGG - chr8_2:18344435-18344454 None:intergenic 25.0%
! AATGTATACTATGTGTTTGA+TGG + chr8_2:18344454-18344473 Msa1238320:intron 25.0%
! GTTAATGCAATTCAAATATG+TGG - chr8_2:18344539-18344558 None:intergenic 25.0%
!!! AGAAAGCTTATAATGGATTT+AGG + chr8_2:18345347-18345366 Msa1238320:intron 25.0%
! CTATACATTAGATATCATAG+AGG + chr8_2:18345782-18345801 Msa1238320:intron 25.0%
!!! ACTTAAAAAGCATTTGTTGA+AGG - chr8_2:18345860-18345879 None:intergenic 25.0%
! GGACTATTAACTGAAATAAA+AGG - chr8_2:18346003-18346022 None:intergenic 25.0%
! GTTAATAGTCCAAAACAAAT+AGG + chr8_2:18346012-18346031 Msa1238320:intron 25.0%
!!! GTTATTTTTGCAAAAGTTCT+TGG + chr8_2:18346191-18346210 Msa1238320:intron 25.0%
! TTCGATTAAATGTAGTAACT+TGG + chr8_2:18346534-18346553 Msa1238320:intron 25.0%
!!! GAATTGAAAATTTTCAGGAA+TGG - chr8_2:18346641-18346660 None:intergenic 25.0%
! TGACTTAAAGAATGAATTGT+AGG + chr8_2:18346771-18346790 Msa1238320:intron 25.0%
!!! TTTTCAGGTATTCTATATGT+TGG + chr8_2:18346969-18346988 Msa1238320:intron 25.0%
! CTTATAACTTATAGGAAAAC+GGG - chr8_2:18347226-18347245 None:intergenic 25.0%
! GCTTATAACTTATAGGAAAA+CGG - chr8_2:18347227-18347246 None:intergenic 25.0%
! GAAATCAGCTTATAACTTAT+AGG - chr8_2:18347234-18347253 None:intergenic 25.0%
! TAACAAGAAAAATATCTGCT+AGG - chr8_2:18347375-18347394 None:intergenic 25.0%
!! TAAAATTGTTTTCCAGAAAG+AGG + chr8_2:18347406-18347425 Msa1238320:intron 25.0%
!! TGATATTGATAATATCTCCT+CGG + chr8_2:18347789-18347808 Msa1238320:three_prime_UTR 25.0%
! CATTCTCATATAACTAAAGT+TGG - chr8_2:18348048-18348067 None:intergenic 25.0%
! TTCATAATCTTGAATAGAAC+TGG - chr8_2:18348085-18348104 None:intergenic 25.0%
! CTATTCAAGATTATGAAATC+TGG + chr8_2:18348088-18348107 Msa1238320:three_prime_UTR 25.0%
!!! TTGTCATTTTTTAAGCAATG+TGG + chr8_2:18348241-18348260 Msa1238320:three_prime_UTR 25.0%
! TTCAAAATGCAAGTCAATAT+TGG + chr8_2:18348298-18348317 Msa1238320:three_prime_UTR 25.0%
ATAAATAAGCCAGAACACAA+CGG + chr8_2:18343060-18343079 Msa1238320:five_prime_UTR 30.0%
GCGACAATTATCTGATATTA+AGG + chr8_2:18343098-18343117 Msa1238320:five_prime_UTR 30.0%
! TAAGGATGTAATGGTCATTT+TGG + chr8_2:18343116-18343135 Msa1238320:five_prime_UTR 30.0%
!! AAGGATGTAATGGTCATTTT+GGG + chr8_2:18343117-18343136 Msa1238320:five_prime_UTR 30.0%
TACAATTCACTTCCAAAGAA+AGG + chr8_2:18343320-18343339 Msa1238320:CDS 30.0%
AAGATGAGAAAGAATACCAT+TGG - chr8_2:18343402-18343421 None:intergenic 30.0%
ATAGATTCTACCTTAAAGCT+AGG - chr8_2:18343901-18343920 None:intergenic 30.0%
TAAGGTAGAATCTATAATGG+AGG + chr8_2:18343906-18343925 Msa1238320:intron 30.0%
GCAAATTCAATCCTATTCAA+AGG + chr8_2:18343928-18343947 Msa1238320:intron 30.0%
CAAAATCACACAACTCATTA+AGG - chr8_2:18344076-18344095 None:intergenic 30.0%
TTCAACAAAGTTTCCAATCA+CGG + chr8_2:18344681-18344700 Msa1238320:intron 30.0%
! TTGTAGTTCTTCATTTTGCA+AGG + chr8_2:18344717-18344736 Msa1238320:intron 30.0%
AATATACCTTAAGAAGTGGT+TGG + chr8_2:18345051-18345070 Msa1238320:CDS 30.0%
TAATTTCCAACCACTTCTTA+AGG - chr8_2:18345060-18345079 None:intergenic 30.0%
AAAGGAGGAATTAGATTACA+TGG - chr8_2:18345104-18345123 None:intergenic 30.0%
!! TTTTGAAGACAAGTTCACTA+TGG - chr8_2:18345143-18345162 None:intergenic 30.0%
! TTTGTGTTTCATTTTGTAGG+TGG + chr8_2:18345209-18345228 Msa1238320:intron 30.0%
AATGGTTCACATTCATCATT+AGG + chr8_2:18345287-18345306 Msa1238320:CDS 30.0%
! TTTTACGTATAACATGACTG+AGG + chr8_2:18345319-18345338 Msa1238320:intron 30.0%
ATCCATTATAAGCTTTCTCT+TGG - chr8_2:18345345-18345364 None:intergenic 30.0%
!!! TGTAAGAATAGGGTTTTAAG+AGG + chr8_2:18345431-18345450 Msa1238320:intron 30.0%
!!! GGTTTTAAGAGGAGTAAATT+TGG + chr8_2:18345442-18345461 Msa1238320:intron 30.0%
!!! TTTGGCACATTTTGATTTAG+AGG + chr8_2:18345460-18345479 Msa1238320:intron 30.0%
!!! TTGGCACATTTTGATTTAGA+GGG + chr8_2:18345461-18345480 Msa1238320:intron 30.0%
GGGAAATATTATGCTTTGAT+TGG + chr8_2:18345481-18345500 Msa1238320:intron 30.0%
TTTGAATCGATCAGATAGTT+TGG - chr8_2:18345530-18345549 None:intergenic 30.0%
! ATCGATTCAAAGTAGAAAGT+GGG + chr8_2:18345539-18345558 Msa1238320:intron 30.0%
!! ATTGGCTTTAATTGAACTTG+TGG - chr8_2:18345810-18345829 None:intergenic 30.0%
AAAGAGTTACAGCAAAGTAT+TGG - chr8_2:18345828-18345847 None:intergenic 30.0%
GATCAGAAAAACAACAGTTA+AGG - chr8_2:18345962-18345981 None:intergenic 30.0%
TAGTCCAAAACAAATAGGAA+TGG + chr8_2:18346017-18346036 Msa1238320:CDS 30.0%
ATCAAACAAAATTGACCTTG+AGG + chr8_2:18346242-18346261 Msa1238320:intron 30.0%
AAGCATAGATATGAAGTTTG+AGG + chr8_2:18346382-18346401 Msa1238320:intron 30.0%
! TATGAAGTTTGAGGTATTTC+TGG + chr8_2:18346391-18346410 Msa1238320:intron 30.0%
! ACTCTGTGTTGATCTATTAT+TGG + chr8_2:18346460-18346479 Msa1238320:intron 30.0%
! ATCTATTATTGGTCTGTATG+TGG + chr8_2:18346471-18346490 Msa1238320:intron 30.0%
GTAATTGACGAAAGATATAC+AGG - chr8_2:18346601-18346620 None:intergenic 30.0%
!! AAATTTTCAGGAATGGTATG+TGG - chr8_2:18346634-18346653 None:intergenic 30.0%
! TCCTGAAAATTTTCAATTCG+AGG + chr8_2:18346642-18346661 Msa1238320:CDS 30.0%
! TCCTCGAATTGAAAATTTTC+AGG - chr8_2:18346646-18346665 None:intergenic 30.0%
CAGATATACTTTATGTTCCA+CGG - chr8_2:18346747-18346766 None:intergenic 30.0%
AAGAAGTTCATCTTACTGTA+TGG + chr8_2:18346916-18346935 Msa1238320:intron 30.0%
! AGCTGAATGCTTAAATTTTC+AGG + chr8_2:18346954-18346973 Msa1238320:intron 30.0%
TCTATATGTTGGAATGAATG+TGG + chr8_2:18346980-18346999 Msa1238320:CDS 30.0%
!! GCTGATTTCATAAGCTATTT+TGG + chr8_2:18347245-18347264 Msa1238320:intron 30.0%
TATGTTGTCCTTAGATATAG+CGG + chr8_2:18347533-18347552 Msa1238320:intron 30.0%
ATCATGCAAAACAAGTGAAA+AGG - chr8_2:18347582-18347601 None:intergenic 30.0%
! GATATTGATAATATCTCCTC+GGG + chr8_2:18347790-18347809 Msa1238320:three_prime_UTR 30.0%
! TTTATCCTTCCTTTTAGACA+AGG + chr8_2:18347911-18347930 Msa1238320:three_prime_UTR 30.0%
TAGATAGGTAGTCTATGTTT+GGG - chr8_2:18347983-18348002 None:intergenic 30.0%
TTAGATAGGTAGTCTATGTT+TGG - chr8_2:18347984-18348003 None:intergenic 30.0%
ATATGAGAATGTAGCTCATT+TGG + chr8_2:18348057-18348076 Msa1238320:three_prime_UTR 30.0%
AGGCTATGAACAAATTAGTT+AGG - chr8_2:18348383-18348402 None:intergenic 30.0%
AAAACGAACTAGGATCTAAT+GGG - chr8_2:18348447-18348466 None:intergenic 30.0%
TAAAACGAACTAGGATCTAA+TGG - chr8_2:18348448-18348467 None:intergenic 30.0%
TATCACACATAAAACGAACT+AGG - chr8_2:18348457-18348476 None:intergenic 30.0%
! TTCGTTTTATGTGTGATATG+TGG + chr8_2:18348459-18348478 Msa1238320:three_prime_UTR 30.0%
! AATTTTACACCTATGATAGC+CGG - chr8_2:18348587-18348606 None:intergenic 30.0%
!! AGGATGTAATGGTCATTTTG+GGG + chr8_2:18343118-18343137 Msa1238320:five_prime_UTR 35.0%
! TTCTGAAGAAGCCATAGATA+TGG - chr8_2:18343255-18343274 None:intergenic 35.0%
ATATCTATGGCTTCTTCAGA+AGG + chr8_2:18343254-18343273 Msa1238320:exon 35.0%
TTCTTCAGAAGGAACAAGTT+TGG + chr8_2:18343265-18343284 Msa1238320:CDS 35.0%
TCTTCAGAAGGAACAAGTTT+GGG + chr8_2:18343266-18343285 Msa1238320:CDS 35.0%
TGAGAAAGAATACCATTGGA+AGG - chr8_2:18343398-18343417 None:intergenic 35.0%
TGGATGTTAAGAATTGAAGG+TGG + chr8_2:18343509-18343528 Msa1238320:intron 35.0%
TCATGAACAACATCACCATA+AGG - chr8_2:18343582-18343601 None:intergenic 35.0%
! TCGAAGTGTTAGTGTATGTT+TGG + chr8_2:18343717-18343736 Msa1238320:intron 35.0%
!! AGCTACAAATCCTAGCTTTA+AGG + chr8_2:18343888-18343907 Msa1238320:intron 35.0%
ATGTTTGGTTGCCTTTGAAT+AGG - chr8_2:18343942-18343961 None:intergenic 35.0%
AAGTTAATGCAGCCTAGAAA+GGG - chr8_2:18344392-18344411 None:intergenic 35.0%
AAAGTTAATGCAGCCTAGAA+AGG - chr8_2:18344393-18344412 None:intergenic 35.0%
! CTTCATTTTGCAAGGAATAG+TGG + chr8_2:18344725-18344744 Msa1238320:intron 35.0%
!! AGGTTTTTCAATTGTGGTCT+CGG - chr8_2:18344813-18344832 None:intergenic 35.0%
AATCTGTGTATAGAAGAACC+TGG - chr8_2:18344916-18344935 None:intergenic 35.0%
CGGAAATATACCTTAAGAAG+TGG + chr8_2:18345047-18345066 Msa1238320:CDS 35.0%
AAGTTCACTATGGAGAGAAA+AGG - chr8_2:18345133-18345152 None:intergenic 35.0%
AATTACTGTTGAACCTACCT+CGG - chr8_2:18345184-18345203 None:intergenic 35.0%
! TGTGAACCATTTTCCTCTAA+AGG - chr8_2:18345278-18345297 None:intergenic 35.0%
! GATCGATTCAAAGTAGAAAG+TGG + chr8_2:18345538-18345557 Msa1238320:intron 35.0%
! GCATTTGTTGAAGGATAACA+GGG - chr8_2:18345851-18345870 None:intergenic 35.0%
! AGCATTTGTTGAAGGATAAC+AGG - chr8_2:18345852-18345871 None:intergenic 35.0%
!!! ACTGTTGTTTTTCTGATCTG+AGG + chr8_2:18345964-18345983 Msa1238320:intron 35.0%
! TGGACCATTCCTATTTGTTT+TGG - chr8_2:18346024-18346043 None:intergenic 35.0%
ATATTGCTCTGTGTGAATGT+AGG + chr8_2:18346268-18346287 Msa1238320:intron 35.0%
!! TATATCATTCTGAGACATGC+TGG + chr8_2:18346309-18346328 Msa1238320:intron 35.0%
AACTTGGTTCATCTTATACC+AGG + chr8_2:18346550-18346569 Msa1238320:intron 35.0%
TTGACGAAAGATATACAGGT+TGG - chr8_2:18346597-18346616 None:intergenic 35.0%
TATCTTTCGTCAATTACCGT+TGG + chr8_2:18346604-18346623 Msa1238320:CDS 35.0%
TGTGATCGTATTGTACACTT+GGG + chr8_2:18346685-18346704 Msa1238320:CDS 35.0%
TCAGATTGCAGAAAATCCTT+TGG - chr8_2:18346858-18346877 None:intergenic 35.0%
TCTGCTAACAATTTGACATG+CGG + chr8_2:18346882-18346901 Msa1238320:CDS 35.0%
AATTAAACAGGGTTAGGTCT+AGG - chr8_2:18347117-18347136 None:intergenic 35.0%
GCTAACAATTAAACAGGGTT+AGG - chr8_2:18347123-18347142 None:intergenic 35.0%
!! AAGCTATTTTGGAGAGCTTA+TGG + chr8_2:18347256-18347275 Msa1238320:intron 35.0%
TATGGACATAAGCTGAAAAC+AGG + chr8_2:18347274-18347293 Msa1238320:intron 35.0%
AAATATCTGCTAGGTCTGTT+TGG - chr8_2:18347366-18347385 None:intergenic 35.0%
! GCCATTGAGAAAAGAGTTTT+TGG + chr8_2:18347446-18347465 Msa1238320:intron 35.0%
! GCCAAAAACTCTTTTCTCAA+TGG - chr8_2:18347450-18347469 None:intergenic 35.0%
CATGAAATACCTTCAGTTCT+CGG - chr8_2:18347500-18347519 None:intergenic 35.0%
!! ACTGAAGGTATTTCATGTGA+TGG + chr8_2:18347503-18347522 Msa1238320:intron 35.0%
ATGTTGTCCTTAGATATAGC+GGG + chr8_2:18347534-18347553 Msa1238320:intron 35.0%
!! TGGCTTCGCTTTAAAAATCT+TGG - chr8_2:18347646-18347665 None:intergenic 35.0%
!! TTAAGCTTTGTTTGAGAGCA+TGG + chr8_2:18347734-18347753 Msa1238320:three_prime_UTR 35.0%
!! TTTGTTTGAGAGCATGGTTT+TGG + chr8_2:18347740-18347759 Msa1238320:three_prime_UTR 35.0%
!! TTCTCCAAAGTGCTCTTTTT+CGG + chr8_2:18347855-18347874 Msa1238320:three_prime_UTR 35.0%
! TTTTTCCTGTTTCCTCAAAC+TGG + chr8_2:18347884-18347903 Msa1238320:three_prime_UTR 35.0%
AGGATAAACTATCCAGTTTG+AGG - chr8_2:18347899-18347918 None:intergenic 35.0%
CATAGACTACCTATCTAAAG+CGG + chr8_2:18347986-18348005 Msa1238320:three_prime_UTR 35.0%
! ATATGCTTTCCGCTTTAGAT+AGG - chr8_2:18347998-18348017 None:intergenic 35.0%
!!! GAACTGGTTTTTATGCAAAG+AGG - chr8_2:18348183-18348202 None:intergenic 35.0%
CAGTTCAGAAACAATTTCAC+CGG + chr8_2:18348197-18348216 Msa1238320:three_prime_UTR 35.0%
TTGAGTAGCAAGTGATCTTA+GGG + chr8_2:18348621-18348640 Msa1238320:three_prime_UTR 35.0%
ATATCAGATAATTGTCGCGG+CGG - chr8_2:18343096-18343115 None:intergenic 40.0%
!! GGATGTAATGGTCATTTTGG+GGG + chr8_2:18343119-18343138 Msa1238320:five_prime_UTR 40.0%
!! GATGTAATGGTCATTTTGGG+GGG + chr8_2:18343120-18343139 Msa1238320:five_prime_UTR 40.0%
CACTTGCAAAGCCATATCTA+TGG + chr8_2:18343241-18343260 Msa1238320:exon 40.0%
AAGGAACAAGTTTGGGTCAA+AGG + chr8_2:18343273-18343292 Msa1238320:CDS 40.0%
AGGAACAAGTTTGGGTCAAA+GGG + chr8_2:18343274-18343293 Msa1238320:CDS 40.0%
AGGAGAAGAGAGAAGAAAAG+CGG - chr8_2:18343378-18343397 None:intergenic 40.0%
GGAACTGGAACAAAGTGTAT+TGG + chr8_2:18343540-18343559 Msa1238320:CDS 40.0%
! TTGCTAGAAGAGCTTTGATC+AGG + chr8_2:18343619-18343638 Msa1238320:CDS 40.0%
ATGCGTGCACTTGAAAATTG+TGG - chr8_2:18344262-18344281 None:intergenic 40.0%
CACTTACATAGACCCTTTCT+AGG + chr8_2:18344377-18344396 Msa1238320:intron 40.0%
GGTTAACGCAGTTCAGTTTA+TGG - chr8_2:18344518-18344537 None:intergenic 40.0%
TGATGACAACTTAGCATTCG+AGG + chr8_2:18345001-18345020 Msa1238320:CDS 40.0%
TTCACTATGGAGAGAAAAGG+AGG - chr8_2:18345130-18345149 None:intergenic 40.0%
! TCTAAAGGCACACTTTCCAT+AGG - chr8_2:18345263-18345282 None:intergenic 40.0%
! TATGGAAAGTGTGCCTTTAG+AGG + chr8_2:18345262-18345281 Msa1238320:CDS 40.0%
! AGTGTGCCTTTAGAGGAAAA+TGG + chr8_2:18345269-18345288 Msa1238320:CDS 40.0%
GGCCAAGAGAAAGCTTATAA+TGG + chr8_2:18345340-18345359 Msa1238320:intron 40.0%
AAGTAGAAAGTGGGAATTGC+AGG + chr8_2:18345548-18345567 Msa1238320:intron 40.0%
AGTAGAAAGTGGGAATTGCA+GGG + chr8_2:18345549-18345568 Msa1238320:intron 40.0%
ATAAACTAGCCCACCCAAAT+TGG + chr8_2:18345604-18345623 Msa1238320:intron 40.0%
! ATTCTTCACGGTGCCAATTT+GGG - chr8_2:18345620-18345639 None:intergenic 40.0%
GTCTTAGGTTCGATTCTTCA+CGG - chr8_2:18345632-18345651 None:intergenic 40.0%
CTACTCAAACCCACTTTAGT+TGG - chr8_2:18345704-18345723 None:intergenic 40.0%
AACAAATAGGAATGGTCCAG+AGG + chr8_2:18346025-18346044 Msa1238320:CDS 40.0%
GTCAGAACAACTAACTGACA+GGG - chr8_2:18346073-18346092 None:intergenic 40.0%
TGTCAGAACAACTAACTGAC+AGG - chr8_2:18346074-18346093 None:intergenic 40.0%
ACAGAGCAATATGATCCTCA+AGG - chr8_2:18346260-18346279 None:intergenic 40.0%
AATGGTATGTGGAAGACCAA+CGG - chr8_2:18346623-18346642 None:intergenic 40.0%
GTGTGATCGTATTGTACACT+TGG + chr8_2:18346684-18346703 Msa1238320:CDS 40.0%
GTGATCGTATTGTACACTTG+GGG + chr8_2:18346686-18346705 Msa1238320:CDS 40.0%
!! ATCTCCATTTCTAGTGAACC+AGG + chr8_2:18346720-18346739 Msa1238320:CDS 40.0%
CATTTCATAGCCGCTAATTC+AGG + chr8_2:18346818-18346837 Msa1238320:intron 40.0%
AAAATCCTTTGGCGTTACAG+GGG - chr8_2:18346847-18346866 None:intergenic 40.0%
GAAAATCCTTTGGCGTTACA+GGG - chr8_2:18346848-18346867 None:intergenic 40.0%
AGAAAATCCTTTGGCGTTAC+AGG - chr8_2:18346849-18346868 None:intergenic 40.0%
CTGCTAACAATTTGACATGC+GGG + chr8_2:18346883-18346902 Msa1238320:CDS 40.0%
GTAAGTAATCTCGTCATCCA+GGG - chr8_2:18347478-18347497 None:intergenic 40.0%
GATTACTTACCGAGAACTGA+AGG + chr8_2:18347488-18347507 Msa1238320:CDS 40.0%
TGTTGTCCTTAGATATAGCG+GGG + chr8_2:18347535-18347554 Msa1238320:intron 40.0%
TTGCATGATGAATCCTTTGC+AGG + chr8_2:18347593-18347612 Msa1238320:intron 40.0%
ATGATGAATCCTTTGCAGGA+TGG + chr8_2:18347597-18347616 Msa1238320:intron 40.0%
TTCACGAACCAGTTGCTAAA+AGG - chr8_2:18347669-18347688 None:intergenic 40.0%
!!! TTTGAGAGCATGGTTTTGGA+GGG + chr8_2:18347744-18347763 Msa1238320:three_prime_UTR 40.0%
!! TTTTTGAAAACTCACACCCG+AGG - chr8_2:18347809-18347828 None:intergenic 40.0%
!! AAAGCCGAAAAAGAGCACTT+TGG - chr8_2:18347862-18347881 None:intergenic 40.0%
ACTATCCAGTTTGAGGAAAC+AGG - chr8_2:18347892-18347911 None:intergenic 40.0%
GTCTATGTTTGGGAGTTAAG+AGG - chr8_2:18347973-18347992 None:intergenic 40.0%
AACCAGTCTGTTTGGGAATT+GGG + chr8_2:18348128-18348147 Msa1238320:three_prime_UTR 40.0%
!! CGGTGAAATTGTTTCTGAAC+TGG - chr8_2:18348199-18348218 None:intergenic 40.0%
!! ACCGGTTTTATGACAGTTCT+CGG + chr8_2:18348215-18348234 Msa1238320:three_prime_UTR 40.0%
ACCGAGAACTGTCATAAAAC+CGG - chr8_2:18348219-18348238 None:intergenic 40.0%
!! TGATTTGTACCGGCTATCAT+AGG + chr8_2:18348575-18348594 Msa1238320:three_prime_UTR 40.0%
GTTGAGTAGCAAGTGATCTT+AGG + chr8_2:18348620-18348639 Msa1238320:three_prime_UTR 40.0%
GTCTGTAGAGTGAACTCAAG+TGG - chr8_2:18343189-18343208 None:intergenic 45.0%
! CCTTGTGGTTTGCCTTTCTT+TGG - chr8_2:18343335-18343354 None:intergenic 45.0%
CCAAAGAAAGGCAAACCACA+AGG + chr8_2:18343332-18343351 Msa1238320:CDS 45.0%
CTTCTCTCTTCTCCTTCCAA+TGG + chr8_2:18343383-18343402 Msa1238320:CDS 45.0%
GAATTGAAGGTGGTTGCACT+TGG + chr8_2:18343519-18343538 Msa1238320:intron 45.0%
! CGTTCTCTTTTGCGTCCTTA+TGG + chr8_2:18343564-18343583 Msa1238320:CDS 45.0%
AGTTTCCAATCACGGACTCA+TGG + chr8_2:18344689-18344708 Msa1238320:intron 45.0%
AGTGGCTGATGTGTACTTTG+TGG + chr8_2:18344743-18344762 Msa1238320:intron 45.0%
GTACTTTGTGGCTACAACTG+CGG + chr8_2:18344755-18344774 Msa1238320:intron 45.0%
!! CTAGGTGCAGATTTGCTACT+TGG - chr8_2:18344954-18344973 None:intergenic 45.0%
AGCAAATCTGCACCTAGCAA+TGG + chr8_2:18344957-18344976 Msa1238320:CDS 45.0%
CACCTAGCAATGGAGCAAAA+CGG + chr8_2:18344967-18344986 Msa1238320:CDS 45.0%
! AACCGTTTTGCTCCATTGCT+AGG - chr8_2:18344972-18344991 None:intergenic 45.0%
TGACAACTTAGCATTCGAGG+TGG + chr8_2:18345004-18345023 Msa1238320:CDS 45.0%
CCTCGGATAGTAACAAAGGA+AGG - chr8_2:18345167-18345186 None:intergenic 45.0%
CCTTCCTTTGTTACTATCCG+AGG + chr8_2:18345164-18345183 Msa1238320:intron 45.0%
CCTACCTCGGATAGTAACAA+AGG - chr8_2:18345171-18345190 None:intergenic 45.0%
CCTTTGTTACTATCCGAGGT+AGG + chr8_2:18345168-18345187 Msa1238320:intron 45.0%
! GATTCTTCACGGTGCCAATT+TGG - chr8_2:18345621-18345640 None:intergenic 45.0%
GAATCGAACCTAAGACCTTG+AGG + chr8_2:18345636-18345655 Msa1238320:intron 45.0%
ACCACCAGACCAACTAAAGT+GGG + chr8_2:18345692-18345711 Msa1238320:intron 45.0%
CAAACCCACTTTAGTTGGTC+TGG - chr8_2:18345699-18345718 None:intergenic 45.0%
GTTCTGACAAGATAGCACGT+TGG + chr8_2:18346085-18346104 Msa1238320:CDS 45.0%
ATAGCACGTTGGAACGTTGT+TGG + chr8_2:18346096-18346115 Msa1238320:CDS 45.0%
TGGAACGTTGTTGGCATTCA+AGG + chr8_2:18346105-18346124 Msa1238320:CDS 45.0%
AAGTACGAAAGCAAAGCTCC+TGG - chr8_2:18346571-18346590 None:intergenic 45.0%
TACTTTATGTTCCACGGACC+TGG - chr8_2:18346741-18346760 None:intergenic 45.0%
GGCTTACATGAAGTCACTCT+TGG + chr8_2:18347001-18347020 Msa1238320:CDS 45.0%
GAAGTCACTCTTGGAACTAC+CGG + chr8_2:18347010-18347029 Msa1238320:CDS 45.0%
CATAAAGACGACTCCGTTGA+TGG - chr8_2:18347073-18347092 None:intergenic 45.0%
TTCCAGAAAGAGGCTGTTAG+AGG + chr8_2:18347416-18347435 Msa1238320:intron 45.0%
AACCTCTAACAGCCTCTTTC+TGG - chr8_2:18347421-18347440 None:intergenic 45.0%
GGTAAGTAATCTCGTCATCC+AGG - chr8_2:18347479-18347498 None:intergenic 45.0%
ATGCATCCCCGCTATATCTA+AGG - chr8_2:18347544-18347563 None:intergenic 45.0%
ACGAACCAGTTGCTAAAAGG+TGG - chr8_2:18347666-18347685 None:intergenic 45.0%
!! CAACTGGTTCGTGAAACCAT+TGG + chr8_2:18347674-18347693 Msa1238320:CDS 45.0%
!!! GTTTGAGAGCATGGTTTTGG+AGG + chr8_2:18347743-18347762 Msa1238320:three_prime_UTR 45.0%
CAATATCAAAAACCCTCCCC+TGG - chr8_2:18347777-18347796 None:intergenic 45.0%
! CTTCCTTTTAGACAAGGCGA+GGG + chr8_2:18347917-18347936 Msa1238320:three_prime_UTR 45.0%
AATCCCTCGCCTTGTCTAAA+AGG - chr8_2:18347923-18347942 None:intergenic 45.0%
GTTTGGGAGTTAAGAGGAGA+GGG - chr8_2:18347967-18347986 None:intergenic 45.0%
TGTTTGGGAGTTAAGAGGAG+AGG - chr8_2:18347968-18347987 None:intergenic 45.0%
CAACCAGTCTGTTTGGGAAT+TGG + chr8_2:18348127-18348146 Msa1238320:three_prime_UTR 45.0%
TTGGGAATTGGGCATATGTC+CGG + chr8_2:18348139-18348158 Msa1238320:three_prime_UTR 45.0%
!!! AAAATTTAAACTTTTTATTT+TGG + chr8_2:18343489-18343508 Msa1238320:intron 5.0%
!! GGTTTTGTGCCGTTGTGTTC+TGG - chr8_2:18343072-18343091 None:intergenic 50.0%
!!! TGGTCATTTTGGGGGGTGTT+AGG + chr8_2:18343127-18343146 Msa1238320:five_prime_UTR 50.0%
!!! GGTCATTTTGGGGGGTGTTA+GGG + chr8_2:18343128-18343147 Msa1238320:five_prime_UTR 50.0%
! AGGCCGTGAAGTCACTGTTT+TGG + chr8_2:18343352-18343371 Msa1238320:CDS 50.0%
CGGCCAAAACAGTGACTTCA+CGG - chr8_2:18343358-18343377 None:intergenic 50.0%
AAGGTGGTTGCACTTGGAAC+TGG + chr8_2:18343525-18343544 Msa1238320:CDS 50.0%
AGCAACCATGAGTCCGTGAT+TGG - chr8_2:18344697-18344716 None:intergenic 50.0%
TTAGCATTCGAGGTGGACGA+AGG + chr8_2:18345011-18345030 Msa1238320:CDS 50.0%
TAGCATTCGAGGTGGACGAA+GGG + chr8_2:18345012-18345031 Msa1238320:CDS 50.0%
!! ACGAAGGGTGTCTTGACAAG+CGG + chr8_2:18345027-18345046 Msa1238320:CDS 50.0%
GAGAAAAGGAGGCGAAAAGG+AGG - chr8_2:18345119-18345138 None:intergenic 50.0%
GGAGAGAAAAGGAGGCGAAA+AGG - chr8_2:18345122-18345141 None:intergenic 50.0%
! TTCACGGTGCCAATTTGGGT+GGG - chr8_2:18345616-18345635 None:intergenic 50.0%
TCGAACCTAAGACCTTGAGG+AGG + chr8_2:18345639-18345658 Msa1238320:intron 50.0%
CACCACCAGACCAACTAAAG+TGG + chr8_2:18345691-18345710 Msa1238320:intron 50.0%
! ACCCACTTTAGTTGGTCTGG+TGG - chr8_2:18345696-18345715 None:intergenic 50.0%
CGGACCTGGTTCACTAGAAA+TGG - chr8_2:18346727-18346746 None:intergenic 50.0%
! TTTCTAGTGAACCAGGTCCG+TGG + chr8_2:18346727-18346746 Msa1238320:intron 50.0%
GGAACTACCGGAAGAAAGCA+AGG + chr8_2:18347022-18347041 Msa1238320:CDS 50.0%
AGACGTGCCTTGCTTTCTTC+CGG - chr8_2:18347032-18347051 None:intergenic 50.0%
AAGCAAGGCACGTCTGCAAA+AGG + chr8_2:18347037-18347056 Msa1238320:CDS 50.0%
AGCAAGGCACGTCTGCAAAA+GGG + chr8_2:18347038-18347057 Msa1238320:CDS 50.0%
!! AGGGGCACTCTATCCATCAA+CGG + chr8_2:18347057-18347076 Msa1238320:CDS 50.0%
!!! AGAGTTTTTGGCCAAGTCCC+TGG + chr8_2:18347458-18347477 Msa1238320:CDS 50.0%
AATCTCGTCATCCAGGGACT+TGG - chr8_2:18347472-18347491 None:intergenic 50.0%
TCTTCAGCACCATCCTGCAA+AGG - chr8_2:18347609-18347628 None:intergenic 50.0%
! CGAAGCCACCTTTTAGCAAC+TGG + chr8_2:18347658-18347677 Msa1238320:CDS 50.0%
!!! AGAGCATGGTTTTGGAGGGA+AGG + chr8_2:18347748-18347767 Msa1238320:three_prime_UTR 50.0%
!! TTTTGGAGGGAAGGAGACCA+GGG + chr8_2:18347757-18347776 Msa1238320:three_prime_UTR 50.0%
CCTCGCCTTGTCTAAAAGGA+AGG - chr8_2:18347919-18347938 None:intergenic 50.0%
! CCTTCCTTTTAGACAAGGCG+AGG + chr8_2:18347916-18347935 Msa1238320:three_prime_UTR 50.0%
GGAGTTAAGAGGAGAGGGAA+GGG - chr8_2:18347962-18347981 None:intergenic 50.0%
GAAATCTGGATTGCACCGTC+CGG + chr8_2:18348102-18348121 Msa1238320:three_prime_UTR 50.0%
! AACAGACTGGTTGAACCGGA+CGG - chr8_2:18348120-18348139 None:intergenic 50.0%
TCCGGTTCAACCAGTCTGTT+TGG + chr8_2:18348120-18348139 Msa1238320:three_prime_UTR 50.0%
! CCCAAACAGACTGGTTGAAC+CGG - chr8_2:18348124-18348143 None:intergenic 50.0%
CCGGTTCAACCAGTCTGTTT+GGG + chr8_2:18348121-18348140 Msa1238320:three_prime_UTR 50.0%
TGCCCAATTCCCAAACAGAC+TGG - chr8_2:18348133-18348152 None:intergenic 50.0%
TTGTTCATAGCCTCGACGCA+TGG + chr8_2:18348390-18348409 Msa1238320:three_prime_UTR 50.0%
CATTCAACTACCATGCGTCG+AGG - chr8_2:18348403-18348422 None:intergenic 50.0%
!! CTAATGGGTTGCGCAACTTC+TGG - chr8_2:18348432-18348451 None:intergenic 50.0%
TCAGATAATTGTCGCGGCGG+CGG - chr8_2:18343093-18343112 None:intergenic 55.0%
ACAGTGACTTCACGGCCTTG+TGG - chr8_2:18343350-18343369 None:intergenic 55.0%
GAGCTCGCTTGTCACTCCTA+TGG + chr8_2:18345244-18345263 Msa1238320:CDS 55.0%
! CTTCACGGTGCCAATTTGGG+TGG - chr8_2:18345617-18345636 None:intergenic 55.0%
GTGCTCCTCCTCAAGGTCTT+AGG - chr8_2:18345647-18345666 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG - chr8_2:18345654-18345673 None:intergenic 55.0%
! TTGAGGAGGAGCACACTCCA+AGG + chr8_2:18345653-18345672 Msa1238320:intron 55.0%
TGTTCGCTTGGGACCTACCT+TGG - chr8_2:18345673-18345692 None:intergenic 55.0%
! TGGTCTGGTGGTGTTCGCTT+GGG - chr8_2:18345684-18345703 None:intergenic 55.0%
! TTGGTCTGGTGGTGTTCGCT+TGG - chr8_2:18345685-18345704 None:intergenic 55.0%
AGGGTTGTATCACCACGACC+TGG - chr8_2:18346054-18346073 None:intergenic 55.0%
ACAGGGGCAGCCTGAATTAG+CGG - chr8_2:18346831-18346850 None:intergenic 55.0%
GCAAGGCACGTCTGCAAAAG+GGG + chr8_2:18347039-18347058 Msa1238320:CDS 55.0%
CGTGAAACCATTGGACTGCG+AGG + chr8_2:18347683-18347702 Msa1238320:CDS 55.0%
!!! GTTTTGGAGGGAAGGAGACC+AGG + chr8_2:18347756-18347775 Msa1238320:three_prime_UTR 55.0%
TTTGGAGGGAAGGAGACCAG+GGG + chr8_2:18347758-18347777 Msa1238320:three_prime_UTR 55.0%
GGGAGTTAAGAGGAGAGGGA+AGG - chr8_2:18347963-18347982 None:intergenic 55.0%
TGGGTTGCGCAACTTCTGGA+TGG - chr8_2:18348428-18348447 None:intergenic 55.0%
! GGAGGAGCACACTCCAAGGT+AGG + chr8_2:18345657-18345676 Msa1238320:intron 60.0%
GGAATGGTCCAGAGGAAGCC+AGG + chr8_2:18346033-18346052 Msa1238320:CDS 60.0%
GGGAATGCCTCGCAGTCCAA+TGG - chr8_2:18347693-18347712 None:intergenic 60.0%
GTCCAGAGGAAGCCAGGTCG+TGG + chr8_2:18346039-18346058 Msa1238320:CDS 65.0%
CACCACGACCTGGCTTCCTC+TGG - chr8_2:18346044-18346063 None:intergenic 65.0%
GGCTGCCCCTGTAACGCCAA+AGG + chr8_2:18346839-18346858 Msa1238320:CDS 65.0%
GAGGGAAGGAGACCAGGGGA+GGG + chr8_2:18347762-18347781 Msa1238320:three_prime_UTR 65.0%
GGAGGGAAGGAGACCAGGGG+AGG + chr8_2:18347761-18347780 Msa1238320:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 18343039 18348648 18343039 ID=Msa1238320;Name=Msa1238320
chr8_2 mRNA 18343039 18348648 18343039 ID=Msa1238320-mRNA-1;Parent=Msa1238320;Name=Msa1238320-mRNA-1;_AED=0.15;_eAED=0.15;_QI=221|0.88|0.8|1|0.88|0.8|10|923|389
chr8_2 exon 18343039 18343404 18343039 ID=Msa1238320-mRNA-1:exon:6910;Parent=Msa1238320-mRNA-1
chr8_2 exon 18343520 18343640 18343520 ID=Msa1238320-mRNA-1:exon:6911;Parent=Msa1238320-mRNA-1
chr8_2 exon 18344917 18345104 18344917 ID=Msa1238320-mRNA-1:exon:6912;Parent=Msa1238320-mRNA-1
chr8_2 exon 18345228 18345308 18345228 ID=Msa1238320-mRNA-1:exon:6913;Parent=Msa1238320-mRNA-1
chr8_2 exon 18346013 18346126 18346013 ID=Msa1238320-mRNA-1:exon:6914;Parent=Msa1238320-mRNA-1
chr8_2 exon 18346572 18346741 18346572 ID=Msa1238320-mRNA-1:exon:6915;Parent=Msa1238320-mRNA-1
chr8_2 exon 18346828 18346904 18346828 ID=Msa1238320-mRNA-1:exon:6916;Parent=Msa1238320-mRNA-1
chr8_2 exon 18346976 18347083 18346976 ID=Msa1238320-mRNA-1:exon:6917;Parent=Msa1238320-mRNA-1
chr8_2 exon 18347455 18347509 18347455 ID=Msa1238320-mRNA-1:exon:6918;Parent=Msa1238320-mRNA-1
chr8_2 exon 18347615 18348648 18347615 ID=Msa1238320-mRNA-1:exon:6919;Parent=Msa1238320-mRNA-1
chr8_2 five_prime_UTR 18343039 18343259 18343039 ID=Msa1238320-mRNA-1:five_prime_utr;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18343260 18343404 18343260 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18343520 18343640 18343520 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18344917 18345104 18344917 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18345228 18345308 18345228 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18346013 18346126 18346013 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18346572 18346741 18346572 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18346828 18346904 18346828 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18346976 18347083 18346976 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18347455 18347509 18347455 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 CDS 18347615 18347725 18347615 ID=Msa1238320-mRNA-1:cds;Parent=Msa1238320-mRNA-1
chr8_2 three_prime_UTR 18347726 18348648 18347726 ID=Msa1238320-mRNA-1:three_prime_utr;Parent=Msa1238320-mRNA-1
Gene Sequence

>Msa1238320

ATGGCTTCTTCAGAAGGAACAAGTTTGGGTCAAAGGGTATCAGAAAAAGTTATCTCTTTATACAATTCACTTCCAAAGAAAGGCAAACCACAAGGCCGTGAAGTCACTGTTTTGGCCGCTTTTCTTCTCTCTTCTCCTTCCAATGAATTGAAGGTGGTTGCACTTGGAACTGGAACAAAGTGTATTGGACGTTCTCTTTTGCGTCCTTATGGTGATGTTGTTCATGATTCTCACGCTGAAGTTATTGCTAGAAGAGCTTTGATCAGGTTCTTCTATACACAGATTCAATTTCTATCTGAACCAAGTAGCAAATCTGCACCTAGCAATGGAGCAAAACGGTTCAAAGTTGATGATGACAACTTAGCATTCGAGGTGGACGAAGGGTGTCTTGACAAGCGGAAATATACCTTAAGAAGTGGTTGGAAATTACATATGTATATATCACAATTACCATGTGGAGATGCTTCACTGAGCTCGCTTGTCACTCCTATGGAAAGTGTGCCTTTAGAGGAAAATGGTTCACATTCATCATTAGTTAATAGTCCAAAACAAATAGGAATGGTCCAGAGGAAGCCAGGTCGTGGTGATACAACCCTGTCAGTTAGTTGTTCTGACAAGATAGCACGTTGGAACGTTGTTGGCATTCAAGGAGCTTTGCTTTCGTACTTTCTCCAACCTGTATATCTTTCGTCAATTACCGTTGGTCTTCCACATACCATTCCTGAAAATTTTCAATTCGAGGATAACTTGAAAAAAGCTTTGTGTGATCGTATTGTACACTTGGGGAATGAGCTAACATCTCCATTTCTAGTGAACCAGCCGCTAATTCAGGCTGCCCCTGTAACGCCAAAGGATTTTCTGCAATCTGAGAGTTCTGCTAACAATTTGACATGCGGGTATTCTATATGTTGGAATGAATGTGGCTTACATGAAGTCACTCTTGGAACTACCGGAAGAAAGCAAGGCACGTCTGCAAAAGGGGCACTCTATCCATCAACGGAGTCAAAAGAGTTTTTGGCCAAGTCCCTGGATGACGAGATTACTTACCGAGAACTGAAGGATGGTGCTGAAGAATATCATTTAGCTTCCAAGATTTTTAAAGCGAAGCCACCTTTTAGCAACTGGTTCGTGAAACCATTGGACTGCGAGGCATTCCCCATTTCAAAATAA
Protein sequence

>Msa1238320

MASSEGTSLGQRVSEKVISLYNSLPKKGKPQGREVTVLAAFLLSSPSNELKVVALGTGTKCIGRSLLRPYGDVVHDSHAEVIARRALIRFFYTQIQFLSEPSSKSAPSNGAKRFKVDDDNLAFEVDEGCLDKRKYTLRSGWKLHMYISQLPCGDASLSSLVTPMESVPLEENGSHSSLVNSPKQIGMVQRKPGRGDTTLSVSCSDKIARWNVVGIQGALLSYFLQPVYLSSITVGLPHTIPENFQFEDNLKKALCDRIVHLGNELTSPFLVNQPLIQAAPVTPKDFLQSESSANNLTCGYSICWNECGLHEVTLGTTGRKQGTSAKGALYPSTESKEFLAKSLDDEITYRELKDGAEEYHLASKIFKAKPPFSNWFVKPLDCEAFPISK*