AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300120 MtrunA17_Chr4g0061561 95.765 307 10 3 10 314 1 306 0.0 583
Msa1300120 MtrunA17_Chr3g0086961 44.022 368 126 16 14 307 3 364 6.84e-59 193
Msa1300120 MtrunA17_Chr7g0219461 61.017 118 45 1 11 127 1 118 2.31e-43 152
Msa1300120 MtrunA17_Chr6g0454781 71.429 84 24 0 48 131 31 114 1.97e-37 136
Msa1300120 MtrunA17_Chr8g0376571 69.863 73 22 0 56 128 51 123 3.97e-28 113
Msa1300120 MtrunA17_Chr8g0360441 52.809 89 42 0 39 127 27 115 3.43e-22 96.3
Msa1300120 MtrunA17_Chr4g0040921 54.321 81 37 0 59 139 15 95 4.93e-22 94.7
Msa1300120 MtrunA17_Chr2g0325171 61.765 68 26 0 60 127 18 85 2.86e-21 92.4
Msa1300120 MtrunA17_Chr2g0316391 58.824 68 28 0 60 127 14 81 3.46e-20 89.0
Msa1300120 MtrunA17_Chr1g0205131 50.000 60 30 0 65 124 108 167 1.66e-12 67.8
Msa1300120 MtrunA17_Chr7g0220931 49.123 57 29 0 68 124 122 178 3.35e-12 66.6
Msa1300120 MtrunA17_Chr6g0456881 48.276 58 30 0 67 124 127 184 4.76e-12 66.2
Msa1300120 MtrunA17_Chr4g0062691 48.276 58 30 0 67 124 133 190 8.65e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300120 AT5G60970.1 80.682 88 16 1 49 135 45 132 6.31e-46 159
Msa1300120 AT3G02150.1 43.062 209 101 7 20 210 28 236 4.80e-42 147
Msa1300120 AT3G02150.2 43.062 209 101 7 20 210 28 236 1.94e-41 147
Msa1300120 AT5G08070.2 50.676 148 64 4 31 178 2 140 2.97e-40 141
Msa1300120 AT5G08070.1 50.676 148 64 4 31 178 2 140 2.97e-40 141
Msa1300120 AT1G30210.2 55.752 113 44 3 18 128 4 112 4.24e-30 117
Msa1300120 AT1G30210.1 55.752 113 44 3 18 128 4 112 4.24e-30 117
Msa1300120 AT4G18390.1 68.493 73 23 0 56 128 32 104 4.09e-28 112
Msa1300120 AT4G18390.2 68.493 73 23 0 56 128 32 104 4.09e-28 112
Msa1300120 AT1G53230.1 57.500 80 31 1 60 136 43 122 3.01e-23 99.4
Msa1300120 AT1G53230.2 57.500 80 31 1 60 136 43 122 3.01e-23 99.4
Msa1300120 AT3G15030.2 61.765 68 26 0 60 127 39 106 5.14e-22 95.9
Msa1300120 AT3G15030.4 61.765 68 26 0 60 127 39 106 5.14e-22 95.9
Msa1300120 AT3G15030.3 61.765 68 26 0 60 127 39 106 5.14e-22 95.9
Msa1300120 AT3G15030.1 61.765 68 26 0 60 127 39 106 5.14e-22 95.9
Msa1300120 AT2G31070.1 60.606 66 26 0 59 124 22 87 2.48e-20 90.5
Msa1300120 AT1G68800.2 46.269 67 36 0 58 124 104 170 1.37e-14 73.9
Msa1300120 AT1G68800.1 46.269 67 36 0 58 124 104 170 1.40e-14 73.9
Msa1300120 AT1G67260.2 41.429 70 41 0 55 124 76 145 8.07e-14 71.6
Msa1300120 AT1G67260.3 41.429 70 41 0 55 124 76 145 8.07e-14 71.6
Msa1300120 AT1G67260.1 41.429 70 41 0 55 124 76 145 9.27e-14 71.6
Msa1300120 AT3G18550.2 39.024 82 49 1 43 124 126 206 2.71e-12 67.4
Msa1300120 AT3G18550.1 39.024 82 49 1 43 124 126 206 2.76e-12 67.4
Msa1300120 AT3G18550.4 39.024 82 49 1 43 124 126 206 2.76e-12 67.4
Msa1300120 AT3G18550.3 39.024 82 49 1 43 124 126 206 3.67e-12 67.0

Find 57 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTAAACGGCGAATTTAT+TGG 0.202116 8_3:-61550894 None:intergenic
GAAATAAATTACCATGATTA+TGG 0.231308 8_3:-61550626 None:intergenic
ACTCTATCTTTATCACAATT+TGG 0.233467 8_3:+61550600 Msa1300120:CDS
CGTGACACTCTCACTATTCT+TGG 0.252002 8_3:-61550183 None:intergenic
CTTGAAGGATCCAATTTATA+TGG 0.254937 8_3:-61550576 None:intergenic
TACTACCTGGTTGCTGAAAT+AGG 0.258592 8_3:-61550434 None:intergenic
CTACCATAACTACCCATTTC+TGG 0.267833 8_3:-61550967 None:intergenic
AGCAAAGTTTGCACAATTAG+AGG 0.305586 8_3:+61550231 Msa1300120:CDS
TGATGTAGCTATTGCTTTGT+TGG 0.307657 8_3:-61550136 None:intergenic
GTGAGAGTGTCACGTTCTTT+AGG 0.317533 8_3:+61550192 Msa1300120:CDS
GATGATAATAACACCAGAAA+TGG 0.330153 8_3:+61550954 Msa1300120:CDS
AATTCACTACTTTCCATTGA+TGG 0.341892 8_3:-61550798 None:intergenic
GATTAAGAGACCGTAGGATT+AGG 0.348209 8_3:+61550253 Msa1300120:CDS
TGTGAATTACCAGATGAATT+AGG 0.362279 8_3:-61550714 None:intergenic
ACTACCTGGTTGCTGAAATA+GGG 0.363637 8_3:-61550433 None:intergenic
AATACTAATTATTCATCAAA+TGG 0.403938 8_3:+61550543 Msa1300120:CDS
CTAGTACTTATTTGATAAGA+AGG 0.404054 8_3:-61550648 None:intergenic
TTTATTGGAAGATGAATAGT+TGG 0.406511 8_3:-61550879 None:intergenic
AGAAGCTGAAAGTTCAGAAA+AGG 0.433467 8_3:+61550509 Msa1300120:CDS
TACTCTGAATGCTCCATCAA+TGG 0.441615 8_3:+61550785 Msa1300120:CDS
GTTCAAGATTTGAACATGGT+TGG 0.449373 8_3:-61550832 None:intergenic
TATGGTATGAATCAAACTAA+AGG 0.451228 8_3:+61550483 Msa1300120:CDS
TTGACAGTACCTAATTCATC+TGG 0.458238 8_3:+61550705 Msa1300120:CDS
AACCTAGCAAAGTTGTTGAA+TGG 0.462940 8_3:+61550334 Msa1300120:CDS
AGTGTTGGATGGCGTCTAAA+CGG 0.463809 8_3:-61550906 None:intergenic
ATCATCTGAATCAAGAAGCT+TGG 0.472188 8_3:-61550937 None:intergenic
TGAACATGGTTGGATTGTCT+TGG 0.473682 8_3:-61550822 None:intergenic
GGATCCAATTTATATGGAAA+AGG 0.478861 8_3:-61550570 None:intergenic
ATGATAATAACACCAGAAAT+GGG 0.506853 8_3:+61550955 Msa1300120:CDS
ATGAAAGAACCATTACTTGA+GGG 0.508573 8_3:-61550855 None:intergenic
AGAAGGTGAACATGGAAGAA+TGG 0.508923 8_3:+61550098 Msa1300120:CDS
TGTTGTTGAGTGAAACTTTG+AGG 0.510713 8_3:-61550408 None:intergenic
GATAAAGATAGAGTACTTGA+AGG 0.512410 8_3:-61550591 None:intergenic
AACCATTCAACAACTTTGCT+AGG 0.525009 8_3:-61550336 None:intergenic
GAAGCTGAAAGTTCAGAAAA+GGG 0.530447 8_3:+61550510 Msa1300120:CDS
GCATGCAGGAGAAAACAGTT+AGG 0.537584 8_3:+61550022 Msa1300120:intron
AGCTTGGAACTAAACAGTGT+TGG 0.544286 8_3:-61550921 None:intergenic
TATGATCTTCAAGACAGACT+TGG 0.562288 8_3:+61550303 Msa1300120:CDS
ATCTTGAACCCCTCAAGTAA+TGG 0.568276 8_3:+61550846 Msa1300120:CDS
AGAGTGTCACGTTCTTTAGG+AGG 0.573587 8_3:+61550195 Msa1300120:CDS
CAATTTGGAAGCCATAATCA+TGG 0.577888 8_3:+61550615 Msa1300120:CDS
TCATATAGCTGAATTGCTGT+TGG 0.578184 8_3:-61550285 None:intergenic
AATGAAAGAACCATTACTTG+AGG 0.584582 8_3:-61550856 None:intergenic
TTATTACATACATACATGCA+TGG 0.585975 8_3:+61549260 None:intergenic
ACAAAACAAGAAGGTGAACA+TGG 0.590894 8_3:+61550090 Msa1300120:CDS
AAAGAAGCAACAAAACAAGA+AGG 0.599775 8_3:+61550081 Msa1300120:CDS
GTACAGACAACCTAATCCTA+CGG 0.604529 8_3:-61550263 None:intergenic
TCTTATCAAATAAGTACTAG+TGG 0.608228 8_3:+61550651 Msa1300120:CDS
TGAAAGAACCATTACTTGAG+GGG 0.615132 8_3:-61550854 None:intergenic
GATGGCAATGGCATAACAGA+AGG 0.624451 8_3:-61550750 None:intergenic
TGGAACTAAACAGTGTTGGA+TGG 0.631286 8_3:-61550917 None:intergenic
AAACTTTGAGGAATATCAAG+TGG 0.636206 8_3:-61550396 None:intergenic
CAATAGCTACATCAAGACAA+TGG 0.639730 8_3:+61550145 Msa1300120:CDS
CTTTGAGGAATATCAAGTGG+TGG 0.640320 8_3:-61550393 None:intergenic
CAAACCCTATTTCAGCAACC+AGG 0.642234 8_3:+61550429 Msa1300120:CDS
TTAGAGGATTAAGAGACCGT+AGG 0.643012 8_3:+61550247 Msa1300120:CDS
AGGGGTTCAAGATTTGAACA+TGG 0.658690 8_3:-61550836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATAAATAAATAAA+AGG - chr8_3:61549321-61549340 None:intergenic 0.0%
!! AATATAAATAAATAAATAAA+AGG - chr8_3:61549321-61549340 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTTCAGT+TGG - chr8_3:61549778-61549797 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTCAGT+TGG - chr8_3:61549778-61549797 None:intergenic 10.0%
!!! TAATTTTTTTTTTGTTGTTG+AGG + chr8_3:61549292-61549311 Msa1300120:intron 15.0%
!!! AATTTTTTTTTTGTTGTTGA+GGG + chr8_3:61549293-61549312 Msa1300120:intron 15.0%
!! TGAACAATTTAATGTTAATT+AGG - chr8_3:61549407-61549426 None:intergenic 15.0%
!!! TAACATTAAATTGTTCATTT+TGG + chr8_3:61549410-61549429 Msa1300120:intron 15.0%
!! AATACTAATTATTCATCAAA+TGG + chr8_3:61550543-61550562 Msa1300120:CDS 15.0%
!!! TAATTTTTTTTTTGTTGTTG+AGG + chr8_3:61549292-61549311 Msa1300120:intron 15.0%
!!! AATTTTTTTTTTGTTGTTGA+GGG + chr8_3:61549293-61549312 Msa1300120:intron 15.0%
!! TGAACAATTTAATGTTAATT+AGG - chr8_3:61549407-61549426 None:intergenic 15.0%
!!! TAACATTAAATTGTTCATTT+TGG + chr8_3:61549410-61549429 Msa1300120:intron 15.0%
!! AATACTAATTATTCATCAAA+TGG + chr8_3:61550543-61550562 Msa1300120:CDS 15.0%
!!! AAAATATTTGAAGCATGATA+TGG - chr8_3:61549610-61549629 None:intergenic 20.0%
!! AATCAAATCTAAACCAAATA+GGG - chr8_3:61549641-61549660 None:intergenic 20.0%
!! AAATCAAATCTAAACCAAAT+AGG - chr8_3:61549642-61549661 None:intergenic 20.0%
!!! ATTTTGCTTATATTTGACAA+AGG - chr8_3:61549801-61549820 None:intergenic 20.0%
!!! TTGGCTATTTTATGAATTTT+TGG + chr8_3:61549917-61549936 Msa1300120:intron 20.0%
!!! TATTACTTTTGAGAATAAGA+AGG - chr8_3:61549955-61549974 None:intergenic 20.0%
!! TCTTATTCTCAAAAGTAATA+TGG + chr8_3:61549955-61549974 Msa1300120:intron 20.0%
!!! TTTTCCTTTTCCATATAAAT+TGG + chr8_3:61550566-61550585 Msa1300120:CDS 20.0%
!! GAAATAAATTACCATGATTA+TGG - chr8_3:61550629-61550648 None:intergenic 20.0%
!!! AAAATATTTGAAGCATGATA+TGG - chr8_3:61549610-61549629 None:intergenic 20.0%
!! AATCAAATCTAAACCAAATA+GGG - chr8_3:61549641-61549660 None:intergenic 20.0%
!! AAATCAAATCTAAACCAAAT+AGG - chr8_3:61549642-61549661 None:intergenic 20.0%
!!! ATTTTGCTTATATTTGACAA+AGG - chr8_3:61549801-61549820 None:intergenic 20.0%
!!! TTGGCTATTTTATGAATTTT+TGG + chr8_3:61549917-61549936 Msa1300120:intron 20.0%
!!! TATTACTTTTGAGAATAAGA+AGG - chr8_3:61549955-61549974 None:intergenic 20.0%
!! TCTTATTCTCAAAAGTAATA+TGG + chr8_3:61549955-61549974 Msa1300120:intron 20.0%
!!! TTTTCCTTTTCCATATAAAT+TGG + chr8_3:61550566-61550585 Msa1300120:CDS 20.0%
!! GAAATAAATTACCATGATTA+TGG - chr8_3:61550629-61550648 None:intergenic 20.0%
! AATTATTCCTTTGCAGAAAA+AGG + chr8_3:61549361-61549380 Msa1300120:intron 25.0%
! AAAATCTGGATGCTATATAT+TGG - chr8_3:61549553-61549572 None:intergenic 25.0%
! TACATGTTGCTACAAAATTA+TGG - chr8_3:61549703-61549722 None:intergenic 25.0%
!!! TTTTTTCTAGCACATGTTTT+TGG + chr8_3:61549898-61549917 Msa1300120:intron 25.0%
!!! TTTTGAGAATAAGAAGGTTA+AGG - chr8_3:61549949-61549968 None:intergenic 25.0%
! TATGGTATGAATCAAACTAA+AGG + chr8_3:61550483-61550502 Msa1300120:CDS 25.0%
! ACTCTATCTTTATCACAATT+TGG + chr8_3:61550600-61550619 Msa1300120:CDS 25.0%
! CTAGTACTTATTTGATAAGA+AGG - chr8_3:61550651-61550670 None:intergenic 25.0%
! TCTTATCAAATAAGTACTAG+TGG + chr8_3:61550651-61550670 Msa1300120:CDS 25.0%
! TTTATTGGAAGATGAATAGT+TGG - chr8_3:61550882-61550901 None:intergenic 25.0%
! ATGATAATAACACCAGAAAT+GGG + chr8_3:61550955-61550974 Msa1300120:CDS 25.0%
! AATTATTCCTTTGCAGAAAA+AGG + chr8_3:61549361-61549380 Msa1300120:intron 25.0%
! AAAATCTGGATGCTATATAT+TGG - chr8_3:61549553-61549572 None:intergenic 25.0%
! TACATGTTGCTACAAAATTA+TGG - chr8_3:61549703-61549722 None:intergenic 25.0%
!!! TTTTTTCTAGCACATGTTTT+TGG + chr8_3:61549898-61549917 Msa1300120:intron 25.0%
!!! TTTTGAGAATAAGAAGGTTA+AGG - chr8_3:61549949-61549968 None:intergenic 25.0%
! TATGGTATGAATCAAACTAA+AGG + chr8_3:61550483-61550502 Msa1300120:CDS 25.0%
! ACTCTATCTTTATCACAATT+TGG + chr8_3:61550600-61550619 Msa1300120:CDS 25.0%
! CTAGTACTTATTTGATAAGA+AGG - chr8_3:61550651-61550670 None:intergenic 25.0%
! TCTTATCAAATAAGTACTAG+TGG + chr8_3:61550651-61550670 Msa1300120:CDS 25.0%
! TTTATTGGAAGATGAATAGT+TGG - chr8_3:61550882-61550901 None:intergenic 25.0%
! ATGATAATAACACCAGAAAT+GGG + chr8_3:61550955-61550974 Msa1300120:CDS 25.0%
! TCTTCCATTTCTTCTCTTTT+TGG + chr8_3:61549473-61549492 Msa1300120:intron 30.0%
ATAGCCAAAAAGAGAAGAAA+TGG - chr8_3:61549480-61549499 None:intergenic 30.0%
!!! ATTTCTTCTCTTTTTGGCTA+TGG + chr8_3:61549479-61549498 Msa1300120:intron 30.0%
TTACTTGAGAGAGTAAAATC+TGG - chr8_3:61549567-61549586 None:intergenic 30.0%
! TTGAAGCATGATATGGATTA+TGG - chr8_3:61549603-61549622 None:intergenic 30.0%
! CAAAAATGGTGCTAAAGAAA+TGG - chr8_3:61549748-61549767 None:intergenic 30.0%
CTCAAAAGTAATATGGATCT+TGG + chr8_3:61549962-61549981 Msa1300120:intron 30.0%
AAAGAAGCAACAAAACAAGA+AGG + chr8_3:61550081-61550100 Msa1300120:CDS 30.0%
! AAACTTTGAGGAATATCAAG+TGG - chr8_3:61550399-61550418 None:intergenic 30.0%
GGATCCAATTTATATGGAAA+AGG - chr8_3:61550573-61550592 None:intergenic 30.0%
CTTGAAGGATCCAATTTATA+TGG - chr8_3:61550579-61550598 None:intergenic 30.0%
! GATAAAGATAGAGTACTTGA+AGG - chr8_3:61550594-61550613 None:intergenic 30.0%
TGTGAATTACCAGATGAATT+AGG - chr8_3:61550717-61550736 None:intergenic 30.0%
! AGAGTACTAGTAAAAAGTGA+TGG - chr8_3:61550771-61550790 None:intergenic 30.0%
AATTCACTACTTTCCATTGA+TGG - chr8_3:61550801-61550820 None:intergenic 30.0%
ATGAAAGAACCATTACTTGA+GGG - chr8_3:61550858-61550877 None:intergenic 30.0%
AATGAAAGAACCATTACTTG+AGG - chr8_3:61550859-61550878 None:intergenic 30.0%
GATGATAATAACACCAGAAA+TGG + chr8_3:61550954-61550973 Msa1300120:CDS 30.0%
! TCTTCCATTTCTTCTCTTTT+TGG + chr8_3:61549473-61549492 Msa1300120:intron 30.0%
ATAGCCAAAAAGAGAAGAAA+TGG - chr8_3:61549480-61549499 None:intergenic 30.0%
!!! ATTTCTTCTCTTTTTGGCTA+TGG + chr8_3:61549479-61549498 Msa1300120:intron 30.0%
TTACTTGAGAGAGTAAAATC+TGG - chr8_3:61549567-61549586 None:intergenic 30.0%
! TTGAAGCATGATATGGATTA+TGG - chr8_3:61549603-61549622 None:intergenic 30.0%
! CAAAAATGGTGCTAAAGAAA+TGG - chr8_3:61549748-61549767 None:intergenic 30.0%
CTCAAAAGTAATATGGATCT+TGG + chr8_3:61549962-61549981 Msa1300120:intron 30.0%
AAAGAAGCAACAAAACAAGA+AGG + chr8_3:61550081-61550100 Msa1300120:CDS 30.0%
! AAACTTTGAGGAATATCAAG+TGG - chr8_3:61550399-61550418 None:intergenic 30.0%
GGATCCAATTTATATGGAAA+AGG - chr8_3:61550573-61550592 None:intergenic 30.0%
CTTGAAGGATCCAATTTATA+TGG - chr8_3:61550579-61550598 None:intergenic 30.0%
! GATAAAGATAGAGTACTTGA+AGG - chr8_3:61550594-61550613 None:intergenic 30.0%
TGTGAATTACCAGATGAATT+AGG - chr8_3:61550717-61550736 None:intergenic 30.0%
! AGAGTACTAGTAAAAAGTGA+TGG - chr8_3:61550771-61550790 None:intergenic 30.0%
AATTCACTACTTTCCATTGA+TGG - chr8_3:61550801-61550820 None:intergenic 30.0%
ATGAAAGAACCATTACTTGA+GGG - chr8_3:61550858-61550877 None:intergenic 30.0%
AATGAAAGAACCATTACTTG+AGG - chr8_3:61550859-61550878 None:intergenic 30.0%
GATGATAATAACACCAGAAA+TGG + chr8_3:61550954-61550973 Msa1300120:CDS 30.0%
TTTGGAAAGAGTTGTTCGTA+CGG + chr8_3:61549428-61549447 Msa1300120:intron 35.0%
! AAGCATGATATGGATTATGG+AGG - chr8_3:61549600-61549619 None:intergenic 35.0%
! ATTTTCTGTCAAGCCCTATT+TGG + chr8_3:61549625-61549644 Msa1300120:intron 35.0%
! CAGTTGGTATGTGTCAAAAA+TGG - chr8_3:61549762-61549781 None:intergenic 35.0%
ACAAAACAAGAAGGTGAACA+TGG + chr8_3:61550090-61550109 Msa1300120:CDS 35.0%
TGATGTAGCTATTGCTTTGT+TGG - chr8_3:61550139-61550158 None:intergenic 35.0%
CAATAGCTACATCAAGACAA+TGG + chr8_3:61550145-61550164 Msa1300120:CDS 35.0%
AGCAAAGTTTGCACAATTAG+AGG + chr8_3:61550231-61550250 Msa1300120:CDS 35.0%
TCATATAGCTGAATTGCTGT+TGG - chr8_3:61550288-61550307 None:intergenic 35.0%
TATGATCTTCAAGACAGACT+TGG + chr8_3:61550303-61550322 Msa1300120:CDS 35.0%
AACCTAGCAAAGTTGTTGAA+TGG + chr8_3:61550334-61550353 Msa1300120:CDS 35.0%
AACCATTCAACAACTTTGCT+AGG - chr8_3:61550339-61550358 None:intergenic 35.0%
TGTTGTTGAGTGAAACTTTG+AGG - chr8_3:61550411-61550430 None:intergenic 35.0%
AGAGAAAAACAAGTACTACC+TGG - chr8_3:61550450-61550469 None:intergenic 35.0%
!! GGTAGTACTTGTTTTTCTCT+TGG + chr8_3:61550450-61550469 Msa1300120:CDS 35.0%
!! AGTACTTGTTTTTCTCTTGG+AGG + chr8_3:61550453-61550472 Msa1300120:CDS 35.0%
AGAAGCTGAAAGTTCAGAAA+AGG + chr8_3:61550509-61550528 Msa1300120:CDS 35.0%
GAAGCTGAAAGTTCAGAAAA+GGG + chr8_3:61550510-61550529 Msa1300120:CDS 35.0%
CAATTTGGAAGCCATAATCA+TGG + chr8_3:61550615-61550634 Msa1300120:CDS 35.0%
TTGACAGTACCTAATTCATC+TGG + chr8_3:61550705-61550724 Msa1300120:CDS 35.0%
CTAGTAAAAAGTGATGGCAA+TGG - chr8_3:61550765-61550784 None:intergenic 35.0%
GTTCAAGATTTGAACATGGT+TGG - chr8_3:61550835-61550854 None:intergenic 35.0%
TGAAAGAACCATTACTTGAG+GGG - chr8_3:61550857-61550876 None:intergenic 35.0%
ATCATCTGAATCAAGAAGCT+TGG - chr8_3:61550940-61550959 None:intergenic 35.0%
TTTGGAAAGAGTTGTTCGTA+CGG + chr8_3:61549428-61549447 Msa1300120:intron 35.0%
! AAGCATGATATGGATTATGG+AGG - chr8_3:61549600-61549619 None:intergenic 35.0%
! ATTTTCTGTCAAGCCCTATT+TGG + chr8_3:61549625-61549644 Msa1300120:intron 35.0%
! CAGTTGGTATGTGTCAAAAA+TGG - chr8_3:61549762-61549781 None:intergenic 35.0%
ACAAAACAAGAAGGTGAACA+TGG + chr8_3:61550090-61550109 Msa1300120:CDS 35.0%
TGATGTAGCTATTGCTTTGT+TGG - chr8_3:61550139-61550158 None:intergenic 35.0%
CAATAGCTACATCAAGACAA+TGG + chr8_3:61550145-61550164 Msa1300120:CDS 35.0%
AGCAAAGTTTGCACAATTAG+AGG + chr8_3:61550231-61550250 Msa1300120:CDS 35.0%
TCATATAGCTGAATTGCTGT+TGG - chr8_3:61550288-61550307 None:intergenic 35.0%
TATGATCTTCAAGACAGACT+TGG + chr8_3:61550303-61550322 Msa1300120:CDS 35.0%
AACCTAGCAAAGTTGTTGAA+TGG + chr8_3:61550334-61550353 Msa1300120:CDS 35.0%
AACCATTCAACAACTTTGCT+AGG - chr8_3:61550339-61550358 None:intergenic 35.0%
TGTTGTTGAGTGAAACTTTG+AGG - chr8_3:61550411-61550430 None:intergenic 35.0%
AGAGAAAAACAAGTACTACC+TGG - chr8_3:61550450-61550469 None:intergenic 35.0%
!! GGTAGTACTTGTTTTTCTCT+TGG + chr8_3:61550450-61550469 Msa1300120:CDS 35.0%
!! AGTACTTGTTTTTCTCTTGG+AGG + chr8_3:61550453-61550472 Msa1300120:CDS 35.0%
AGAAGCTGAAAGTTCAGAAA+AGG + chr8_3:61550509-61550528 Msa1300120:CDS 35.0%
GAAGCTGAAAGTTCAGAAAA+GGG + chr8_3:61550510-61550529 Msa1300120:CDS 35.0%
CAATTTGGAAGCCATAATCA+TGG + chr8_3:61550615-61550634 Msa1300120:CDS 35.0%
TTGACAGTACCTAATTCATC+TGG + chr8_3:61550705-61550724 Msa1300120:CDS 35.0%
CTAGTAAAAAGTGATGGCAA+TGG - chr8_3:61550765-61550784 None:intergenic 35.0%
GTTCAAGATTTGAACATGGT+TGG - chr8_3:61550835-61550854 None:intergenic 35.0%
TGAAAGAACCATTACTTGAG+GGG - chr8_3:61550857-61550876 None:intergenic 35.0%
ATCATCTGAATCAAGAAGCT+TGG - chr8_3:61550940-61550959 None:intergenic 35.0%
AGTTTGTAAGTTGTGCATGC+AGG + chr8_3:61550008-61550027 Msa1300120:intron 40.0%
AGAAGGTGAACATGGAAGAA+TGG + chr8_3:61550098-61550117 Msa1300120:CDS 40.0%
TTAGAGGATTAAGAGACCGT+AGG + chr8_3:61550247-61550266 Msa1300120:CDS 40.0%
GATTAAGAGACCGTAGGATT+AGG + chr8_3:61550253-61550272 Msa1300120:CDS 40.0%
GTACAGACAACCTAATCCTA+CGG - chr8_3:61550266-61550285 None:intergenic 40.0%
! CTTTGAGGAATATCAAGTGG+TGG - chr8_3:61550396-61550415 None:intergenic 40.0%
ACTACCTGGTTGCTGAAATA+GGG - chr8_3:61550436-61550455 None:intergenic 40.0%
TACTACCTGGTTGCTGAAAT+AGG - chr8_3:61550437-61550456 None:intergenic 40.0%
!! ACTTGTTTTTCTCTTGGAGG+TGG + chr8_3:61550456-61550475 Msa1300120:CDS 40.0%
! TCTCTTGGAGGTGGTTTTTA+TGG + chr8_3:61550465-61550484 Msa1300120:CDS 40.0%
TACTCTGAATGCTCCATCAA+TGG + chr8_3:61550785-61550804 Msa1300120:CDS 40.0%
TGAACATGGTTGGATTGTCT+TGG - chr8_3:61550825-61550844 None:intergenic 40.0%
AGGGGTTCAAGATTTGAACA+TGG - chr8_3:61550839-61550858 None:intergenic 40.0%
ATCTTGAACCCCTCAAGTAA+TGG + chr8_3:61550846-61550865 Msa1300120:CDS 40.0%
CGTCTAAACGGCGAATTTAT+TGG - chr8_3:61550897-61550916 None:intergenic 40.0%
! TGGAACTAAACAGTGTTGGA+TGG - chr8_3:61550920-61550939 None:intergenic 40.0%
AGCTTGGAACTAAACAGTGT+TGG - chr8_3:61550924-61550943 None:intergenic 40.0%
AGTTTGTAAGTTGTGCATGC+AGG + chr8_3:61550008-61550027 Msa1300120:intron 40.0%
AGAAGGTGAACATGGAAGAA+TGG + chr8_3:61550098-61550117 Msa1300120:CDS 40.0%
TTAGAGGATTAAGAGACCGT+AGG + chr8_3:61550247-61550266 Msa1300120:CDS 40.0%
GATTAAGAGACCGTAGGATT+AGG + chr8_3:61550253-61550272 Msa1300120:CDS 40.0%
GTACAGACAACCTAATCCTA+CGG - chr8_3:61550266-61550285 None:intergenic 40.0%
! CTTTGAGGAATATCAAGTGG+TGG - chr8_3:61550396-61550415 None:intergenic 40.0%
ACTACCTGGTTGCTGAAATA+GGG - chr8_3:61550436-61550455 None:intergenic 40.0%
TACTACCTGGTTGCTGAAAT+AGG - chr8_3:61550437-61550456 None:intergenic 40.0%
!! ACTTGTTTTTCTCTTGGAGG+TGG + chr8_3:61550456-61550475 Msa1300120:CDS 40.0%
! TCTCTTGGAGGTGGTTTTTA+TGG + chr8_3:61550465-61550484 Msa1300120:CDS 40.0%
TACTCTGAATGCTCCATCAA+TGG + chr8_3:61550785-61550804 Msa1300120:CDS 40.0%
TGAACATGGTTGGATTGTCT+TGG - chr8_3:61550825-61550844 None:intergenic 40.0%
AGGGGTTCAAGATTTGAACA+TGG - chr8_3:61550839-61550858 None:intergenic 40.0%
ATCTTGAACCCCTCAAGTAA+TGG + chr8_3:61550846-61550865 Msa1300120:CDS 40.0%
CGTCTAAACGGCGAATTTAT+TGG - chr8_3:61550897-61550916 None:intergenic 40.0%
! TGGAACTAAACAGTGTTGGA+TGG - chr8_3:61550920-61550939 None:intergenic 40.0%
AGCTTGGAACTAAACAGTGT+TGG - chr8_3:61550924-61550943 None:intergenic 40.0%
! TCTGCAGCCTTTTTCTGCAA+AGG - chr8_3:61549371-61549390 None:intergenic 45.0%
TTTGCAGAAAAAGGCTGCAG+AGG + chr8_3:61549370-61549389 Msa1300120:intron 45.0%
GCATGCAGGAGAAAACAGTT+AGG + chr8_3:61550022-61550041 Msa1300120:intron 45.0%
CGTGACACTCTCACTATTCT+TGG - chr8_3:61550186-61550205 None:intergenic 45.0%
!! GTGAGAGTGTCACGTTCTTT+AGG + chr8_3:61550192-61550211 Msa1300120:CDS 45.0%
! AGAGTGTCACGTTCTTTAGG+AGG + chr8_3:61550195-61550214 Msa1300120:CDS 45.0%
CAAACCCTATTTCAGCAACC+AGG + chr8_3:61550429-61550448 Msa1300120:CDS 45.0%
GATGGCAATGGCATAACAGA+AGG - chr8_3:61550753-61550772 None:intergenic 45.0%
! AGTGTTGGATGGCGTCTAAA+CGG - chr8_3:61550909-61550928 None:intergenic 45.0%
! TCTGCAGCCTTTTTCTGCAA+AGG - chr8_3:61549371-61549390 None:intergenic 45.0%
TTTGCAGAAAAAGGCTGCAG+AGG + chr8_3:61549370-61549389 Msa1300120:intron 45.0%
GCATGCAGGAGAAAACAGTT+AGG + chr8_3:61550022-61550041 Msa1300120:intron 45.0%
CGTGACACTCTCACTATTCT+TGG - chr8_3:61550186-61550205 None:intergenic 45.0%
!! GTGAGAGTGTCACGTTCTTT+AGG + chr8_3:61550192-61550211 Msa1300120:CDS 45.0%
! AGAGTGTCACGTTCTTTAGG+AGG + chr8_3:61550195-61550214 Msa1300120:CDS 45.0%
CAAACCCTATTTCAGCAACC+AGG + chr8_3:61550429-61550448 Msa1300120:CDS 45.0%
GATGGCAATGGCATAACAGA+AGG - chr8_3:61550753-61550772 None:intergenic 45.0%
! AGTGTTGGATGGCGTCTAAA+CGG - chr8_3:61550909-61550928 None:intergenic 45.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61549275 61550980 61549275 ID=Msa1300120;Name=Msa1300120
chr8_3 mRNA 61549275 61550980 61549275 ID=Msa1300120-mRNA-1;Parent=Msa1300120;Name=Msa1300120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.5|0|1|2|0|319
chr8_3 exon 61549275 61549283 61549275 ID=Msa1300120-mRNA-1:exon:18146;Parent=Msa1300120-mRNA-1
chr8_3 exon 61550030 61550980 61550030 ID=Msa1300120-mRNA-1:exon:18147;Parent=Msa1300120-mRNA-1
chr8_3 CDS 61549275 61549283 61549275 ID=Msa1300120-mRNA-1:cds;Parent=Msa1300120-mRNA-1
chr8_3 CDS 61550030 61550980 61550030 ID=Msa1300120-mRNA-1:cds;Parent=Msa1300120-mRNA-1
Gene Sequence

>Msa1300120

ATGCATGGTGAGAAAACAGTTAGGTTGATGATGATAGAAAGTTCAAGTAAAGATTATAACAAAGAAGCAACAAAACAAGAAGGTGAACATGGAAGAATGGAATCAGAGAAATTCTCCAACAAAGCAATAGCTACATCAAGACAATGGACATCATTAAGAAATCCAAGAATAGTGAGAGTGTCACGTTCTTTAGGAGGAAAAGACAGACACAGCAAAGTTTGCACAATTAGAGGATTAAGAGACCGTAGGATTAGGTTGTCTGTACCAACAGCAATTCAGCTATATGATCTTCAAGACAGACTTGGTTTAAGTCAACCTAGCAAAGTTGTTGAATGGTTAATTGAAGCAACTCAATCTGATATTGATAAATTACCACCACTTGATATTCCTCAAAGTTTCACTCAACAACAAACCCTATTTCAGCAACCAGGTAGTACTTGTTTTTCTCTTGGAGGTGGTTTTTATGGTATGAATCAAACTAAAGGTAAAGAAGCTGAAAGTTCAGAAAAGGGTAATTATTATAATACTAATTATTCATCAAATGGTTTTCCTTTTCCATATAAATTGGATCCTTCAAGTACTCTATCTTTATCACAATTTGGAAGCCATAATCATGGTAATTTATTTCCTTCTTATCAAATAAGTACTAGTGGCAGTGATATGCAATTTTCATCATCTTCAAATTTGACAGTACCTAATTCATCTGGTAATTCACAGTTACTTTTGTGTCCTTCTGTTATGCCATTGCCATCACTTTTTACTAGTACTCTGAATGCTCCATCAATGGAAAGTAGTGAATTTCCAAGACAATCCAACCATGTTCAAATCTTGAACCCCTCAAGTAATGGTTCTTTCATTCCAACTATTCATCTTCCAATAAATTCGCCGTTTAGACGCCATCCAACACTGTTTAGTTCCAAGCTTCTTGATTCAGATGATAATAACACCAGAAATGGGTAG

Protein sequence

>Msa1300120

MHGEKTVRLMMIESSSKDYNKEATKQEGEHGRMESEKFSNKAIATSRQWTSLRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVEWLIEATQSDIDKLPPLDIPQSFTQQQTLFQQPGSTCFSLGGGFYGMNQTKGKEAESSEKGNYYNTNYSSNGFPFPYKLDPSSTLSLSQFGSHNHGNLFPSYQISTSGSDMQFSSSSNLTVPNSSGNSQLLLCPSVMPLPSLFTSTLNAPSMESSEFPRQSNHVQILNPSSNGSFIPTIHLPINSPFRRHPTLFSSKLLDSDDNNTRNG*