AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871910 MtrunA17_Chr6g0453231 90.728 302 17 5 33 331 35 328 5.79e-160 450
Msa0871910 MtrunA17_Chr7g0217231 53.474 331 119 9 25 336 27 341 7.77e-89 270
Msa0871910 MtrunA17_Chr3g0133181 45.098 204 89 6 92 283 78 270 2.10e-49 166
Msa0871910 MtrunA17_Chr1g0188441 42.308 208 92 5 90 290 5 191 2.41e-47 158
Msa0871910 MtrunA17_Chr5g0412501 44.231 208 87 5 94 286 78 271 4.49e-46 157
Msa0871910 MtrunA17_Chr5g0427051 40.909 220 97 7 92 286 56 267 7.80e-46 157
Msa0871910 MtrunA17_Chr5g0404271 40.654 214 93 7 92 286 97 295 1.92e-45 156
Msa0871910 MtrunA17_Chr4g0076821 36.948 249 112 5 94 299 113 359 5.07e-42 149
Msa0871910 MtrunA17_Chr2g0315941 38.400 250 127 7 50 286 32 267 2.31e-39 140
Msa0871910 MtrunA17_Chr8g0367691 38.645 251 124 8 50 286 33 267 1.01e-38 138
Msa0871910 MtrunA17_Chr6g0479901 35.233 193 70 5 94 282 19 160 1.55e-32 119
Msa0871910 MtrunA17_Chr8g0361671 73.770 61 16 0 90 150 60 120 3.10e-26 107
Msa0871910 MtrunA17_Chr8g0357741 59.375 64 25 1 223 286 34 96 1.99e-18 79.3
Msa0871910 MtrunA17_Chr3g0092371 47.500 80 38 2 79 158 5 80 2.60e-17 75.9
Msa0871910 MtrunA17_Chr6g0453221 61.111 54 15 1 91 144 18 65 7.32e-16 72.0
Msa0871910 MtrunA17_Chr4g0060731 55.738 61 22 2 85 145 16 71 8.91e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871910 AT5G15210.1 50.000 288 88 11 23 302 6 245 7.91e-74 229
Msa0871910 AT3G28920.1 46.203 316 96 7 33 311 12 290 1.18e-67 215
Msa0871910 AT1G69600.1 51.415 212 82 4 80 283 17 215 4.50e-62 198
Msa0871910 AT2G02540.2 45.701 221 101 6 78 286 71 284 6.86e-56 184
Msa0871910 AT2G02540.1 45.701 221 101 6 78 286 71 284 6.86e-56 184
Msa0871910 AT4G24660.1 47.692 195 80 6 92 286 47 219 1.53e-50 167
Msa0871910 AT5G60480.1 46.114 193 82 3 89 280 32 203 5.63e-50 166
Msa0871910 AT4G24660.2 47.396 192 79 6 92 283 47 216 4.60e-49 164
Msa0871910 AT1G14440.1 42.929 198 107 4 91 286 87 280 1.44e-44 155
Msa0871910 AT1G14440.2 42.929 198 107 4 91 286 87 280 1.44e-44 155
Msa0871910 AT5G65410.1 43.814 194 91 4 94 285 75 252 4.96e-42 147
Msa0871910 AT1G75240.1 37.826 230 97 4 92 281 74 297 4.92e-41 145
Msa0871910 AT2G18350.1 40.000 200 92 3 94 286 82 260 1.24e-40 143
Msa0871910 AT3G50890.1 39.512 205 89 7 94 285 60 242 4.69e-36 131
Msa0871910 AT5G39760.1 76.562 64 15 0 223 286 199 262 2.25e-29 115
Msa0871910 AT1G14687.1 29.843 191 101 6 93 281 6 165 1.56e-20 87.4
Msa0871910 AT5G42780.1 29.949 197 109 7 94 283 64 238 8.60e-17 79.0
Msa0871910 AT1G74660.2 57.407 54 21 1 92 145 37 88 1.03e-16 75.1
Msa0871910 AT1G74660.1 52.239 67 28 2 92 158 37 99 1.55e-16 74.7
Msa0871910 AT1G18835.1 56.716 67 22 3 92 158 24 83 1.44e-15 71.6
Msa0871910 AT3G28917.1 55.932 59 25 1 92 150 31 88 5.14e-15 70.5

Find 91 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTCAGATCATGTTAA+TGG 0.215089 6_1:-7181638 Msa0871910:CDS
TGGTGGTTGTTATGGTGGTT+TGG 0.275152 6_1:+7182295 None:intergenic
TGGAAAAGTGGTGGTGGTGG+TGG 0.279885 6_1:+7182010 None:intergenic
AGATAATGGGTTGTTGGATT+CGG 0.283601 6_1:+7182371 None:intergenic
GCTGCTTGTGCTACTACTAA+TGG 0.296309 6_1:-7181530 Msa0871910:CDS
ATAGAAGTGTTCTCAAAGTT+TGG 0.303184 6_1:-7181697 Msa0871910:CDS
GGTGGTTGTTATGGTGGTTT+GGG 0.305679 6_1:+7182296 None:intergenic
ACGGTGGAAATTGGTTCTTC+TGG 0.326802 6_1:+7182064 None:intergenic
CAACGTTGTTGTGGCTGTTA+AGG 0.341042 6_1:+7182251 None:intergenic
GATAATGGGTTGTTGGATTC+GGG 0.351015 6_1:+7182372 None:intergenic
TGTTATGGTGGTTTGGGTGG+TGG 0.354967 6_1:+7182302 None:intergenic
TGTTGTTGTGGTGGTTGTTA+TGG 0.356036 6_1:+7182287 None:intergenic
GCAGAAGAGAGATGAAGAAA+TGG 0.377517 6_1:-7181750 Msa0871910:CDS
TTTGTTATGTTTGAGATAAT+GGG 0.378182 6_1:+7182358 None:intergenic
GCCGCCGTGGATGGTGGCTC+CGG 0.384816 6_1:-7181596 Msa0871910:CDS
GTGGTGGTGGTGGGTGGTGA+CGG 0.390566 6_1:+7182020 None:intergenic
GAGAATGAGAATGAGAATAA+TGG 0.393072 6_1:-7181563 Msa0871910:CDS
CATAATAATAAGAACACTTT+GGG 0.393395 6_1:-7181671 Msa0871910:CDS
GGAAAAGTGGTGGTGGTGGT+GGG 0.399754 6_1:+7182011 None:intergenic
TGGGTTGTTGGATTCGGGTC+GGG 0.404618 6_1:+7182377 None:intergenic
GTTCACGGCGGTGAAAATTC+CGG 0.416370 6_1:+7182086 None:intergenic
CTGCTTGTGCTACTACTAAT+GGG 0.418784 6_1:-7181529 Msa0871910:CDS
AGTAGTGTTTGTGGAGTTTG+AGG 0.419884 6_1:+7182450 None:intergenic
TGTGTTTGTGTTTGTGTTTG+TGG 0.422854 6_1:+7182474 None:intergenic
GCACTCTCCGGCGGCGGAGT+TGG 0.428986 6_1:-7181917 Msa0871910:CDS
TAAAGATGTAGTAGTGTTTG+TGG 0.433691 6_1:+7182441 None:intergenic
ACCATCCACGGCGGCGTTCA+CGG 0.436275 6_1:+7181604 None:intergenic
CATGAATTTGCTGATAAAGT+TGG 0.436563 6_1:-7181782 Msa0871910:CDS
GTTAAACCTAAGTTCACCTA+TGG 0.442479 6_1:-7181861 Msa0871910:CDS
TTGTTCCCATAGGTGAACTT+AGG 0.444104 6_1:+7181855 None:intergenic
GGAGGCAGGGTCATCGGAGG+TGG 0.445990 6_1:+7182135 None:intergenic
AAATTGGTTCTTCTGGTTCA+CGG 0.448974 6_1:+7182071 None:intergenic
GCCGTGAACGCCGCCGTGGA+TGG 0.449107 6_1:-7181605 Msa0871910:CDS
CTCCGCCGCCGGAGAGTGCT+AGG 0.449288 6_1:+7181921 None:intergenic
GCATAATAATAAGAACACTT+TGG 0.453675 6_1:-7181672 Msa0871910:CDS
ATAGGTGAACTTAGGTTTAA+CGG 0.456911 6_1:+7181863 None:intergenic
TCGGAGGTGGCGGTTGGTGA+TGG 0.461744 6_1:+7182148 None:intergenic
TGTTTGAGATAATGGGTTGT+TGG 0.465522 6_1:+7182365 None:intergenic
GATGAGATCGGTGGTGGTGA+TGG 0.466679 6_1:+7181968 None:intergenic
GGCAGGGTCATCGGAGGTGG+CGG 0.467994 6_1:+7182138 None:intergenic
AGAATGAGAATGAGAATAAT+GGG 0.469330 6_1:-7181562 Msa0871910:CDS
GTGGATGGTGGCTCCGGTGG+TGG 0.475321 6_1:-7181590 Msa0871910:CDS
TGTTGTGGTGGTTGTTATGG+TGG 0.485309 6_1:+7182290 None:intergenic
CTCCTAGCACTCTCCGGCGG+CGG 0.489973 6_1:-7181923 Msa0871910:CDS
TGAATTCACAACAACCGTCT+AGG 0.501575 6_1:+7182173 None:intergenic
GAGAGCTTGGTGAACGTGAC+TGG 0.503561 6_1:+7181990 None:intergenic
GGTTGTTATGGTGGTTTGGG+TGG 0.511067 6_1:+7182299 None:intergenic
ATGGGTTGTTGGATTCGGGT+CGG 0.520221 6_1:+7182376 None:intergenic
GGTGGGTGGTGACGGTGATG+AGG 0.524327 6_1:+7182028 None:intergenic
GGGTCATCGGAGGTGGCGGT+TGG 0.524984 6_1:+7182142 None:intergenic
GACTGGAAAAGTGGTGGTGG+TGG 0.528628 6_1:+7182007 None:intergenic
CTCATTCTCACAACCACCAC+CGG 0.531538 6_1:+7181577 None:intergenic
ATGAATTTGCTGATAAAGTT+GGG 0.532314 6_1:-7181781 Msa0871910:CDS
GTGAACGCCGCCGTGGATGG+TGG 0.534786 6_1:-7181602 Msa0871910:CDS
CGGCGCCGTGAACGCCGCCG+TGG 0.539639 6_1:-7181609 Msa0871910:CDS
ACCACCGGAGCCACCATCCA+CGG 0.540943 6_1:+7181592 None:intergenic
TACTAACAACGTTGTTGTTG+TGG 0.545220 6_1:+7182275 None:intergenic
GAATTCACAACAACCGTCTA+GGG 0.549245 6_1:+7182174 None:intergenic
GAGAGTGCTAGGAGCATATG+TGG 0.550446 6_1:+7181932 None:intergenic
AGAGATGAAGAAATGGTGAA+TGG 0.553318 6_1:-7181743 Msa0871910:CDS
GGGTATGATGAGATCGGTGG+TGG 0.562285 6_1:+7181962 None:intergenic
AAAATTCACACAAGAACAGA+AGG 0.564253 6_1:-7181813 Msa0871910:CDS
CATATGCTCCTAGCACTCTC+CGG 0.577763 6_1:-7181929 Msa0871910:CDS
GCCGTGGATGGTGGCTCCGG+TGG 0.577896 6_1:-7181593 Msa0871910:CDS
GTGCCGCATGTGGTTGTCAC+CGG 0.583080 6_1:-7182105 Msa0871910:CDS
CGTCTAGGGCATGACCACCT+AGG 0.585677 6_1:+7182188 None:intergenic
GTCTAGGGCATGACCACCTA+GGG 0.587406 6_1:+7182189 None:intergenic
AGAGAGACCAACTCCGCCGC+CGG 0.587710 6_1:+7181910 None:intergenic
GGTGGTGGTGATGGAGAGCT+TGG 0.592318 6_1:+7181977 None:intergenic
TAACAACGTTGTTGTTGTGG+TGG 0.598435 6_1:+7182278 None:intergenic
GGAGCATATGTGGAGCTGAT+GGG 0.599078 6_1:+7181942 None:intergenic
GTTTGTGTTTGTGTTTGTGG+TGG 0.601120 6_1:+7182477 None:intergenic
GGTGAACGTGACTGGAAAAG+TGG 0.613133 6_1:+7181998 None:intergenic
AGTTGGTCTCTCTATCCCAC+CGG 0.613344 6_1:-7181900 Msa0871910:CDS
TTAAACCTAAGTTCACCTAT+GGG 0.614933 6_1:-7181860 Msa0871910:CDS
AGGAGCATATGTGGAGCTGA+TGG 0.615206 6_1:+7181941 None:intergenic
CTAGGTGGTCATGCCCTAGA+CGG 0.615275 6_1:-7182187 Msa0871910:CDS
TCCATAAAATGTGCCGCATG+TGG 0.626127 6_1:-7182115 Msa0871910:CDS
CGTGACTGGAAAAGTGGTGG+TGG 0.630559 6_1:+7182004 None:intergenic
TATGGAGGCAGGGTCATCGG+AGG 0.631784 6_1:+7182132 None:intergenic
ATTCCGGTGACAACCACATG+CGG 0.634291 6_1:+7182102 None:intergenic
AAGTAACAACAACGTTGTTG+TGG 0.645069 6_1:+7182242 None:intergenic
GCTGATGGGTATGATGAGAT+CGG 0.658606 6_1:+7181956 None:intergenic
AATCACGTGGCAACCCTAGG+TGG 0.662603 6_1:-7182202 Msa0871910:CDS
AATTTGCTGATAAAGTTGGG+TGG 0.672155 6_1:-7181778 Msa0871910:CDS
GATCATGTTAATGGTGACAG+CGG 0.697033 6_1:-7181629 Msa0871910:CDS
ATGCTCCTAGCACTCTCCGG+CGG 0.721377 6_1:-7181926 Msa0871910:CDS
GAACGTGACTGGAAAAGTGG+TGG 0.728886 6_1:+7182001 None:intergenic
GATGGGTATGATGAGATCGG+TGG 0.748971 6_1:+7181959 None:intergenic
ACCGGAGCCACCATCCACGG+CGG 0.754774 6_1:+7181595 None:intergenic
TTGGTTCTTCTGGTTCACGG+CGG 0.755592 6_1:+7182074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTATGTTTGAGATAAT+GGG + chr6_1:7181655-7181674 None:intergenic 20.0%
!!! TTTTGTTATGTTTGAGATAA+TGG + chr6_1:7181656-7181675 None:intergenic 20.0%
!! CATAATAATAAGAACACTTT+GGG - chr6_1:7182339-7182358 Msa0871910:CDS 20.0%
!!! TTTGTTATGTTTGAGATAAT+GGG + chr6_1:7181655-7181674 None:intergenic 20.0%
!!! TTTTGTTATGTTTGAGATAA+TGG + chr6_1:7181656-7181675 None:intergenic 20.0%
!! CATAATAATAAGAACACTTT+GGG - chr6_1:7182339-7182358 Msa0871910:CDS 20.0%
!!! AAACCTTTGTCTTTTTCAAA+TGG - chr6_1:7181673-7181692 Msa0871910:CDS 25.0%
!!! ATGAGGTTGATATTCAAAAA+CGG + chr6_1:7181968-7181987 None:intergenic 25.0%
!!! ATGAATTTGCTGATAAAGTT+GGG - chr6_1:7182229-7182248 Msa0871910:CDS 25.0%
! GCATAATAATAAGAACACTT+TGG - chr6_1:7182338-7182357 Msa0871910:CDS 25.0%
! AGAATGAGAATGAGAATAAT+GGG - chr6_1:7182448-7182467 Msa0871910:CDS 25.0%
!!! AAACCTTTGTCTTTTTCAAA+TGG - chr6_1:7181673-7181692 Msa0871910:CDS 25.0%
!!! ATGAGGTTGATATTCAAAAA+CGG + chr6_1:7181968-7181987 None:intergenic 25.0%
!!! ATGAATTTGCTGATAAAGTT+GGG - chr6_1:7182229-7182248 Msa0871910:CDS 25.0%
! GCATAATAATAAGAACACTT+TGG - chr6_1:7182338-7182357 Msa0871910:CDS 25.0%
! AGAATGAGAATGAGAATAAT+GGG - chr6_1:7182448-7182467 Msa0871910:CDS 25.0%
TAAAGATGTAGTAGTGTTTG+TGG + chr6_1:7181572-7181591 None:intergenic 30.0%
ACACCATTTGAAAAAGACAA+AGG + chr6_1:7181679-7181698 None:intergenic 30.0%
TATTCAAAAACGGTGGAAAT+TGG + chr6_1:7181958-7181977 None:intergenic 30.0%
ATAGGTGAACTTAGGTTTAA+CGG + chr6_1:7182150-7182169 None:intergenic 30.0%
TTAAACCTAAGTTCACCTAT+GGG - chr6_1:7182150-7182169 Msa0871910:CDS 30.0%
AAAATTCACACAAGAACAGA+AGG - chr6_1:7182197-7182216 Msa0871910:CDS 30.0%
!! CATGAATTTGCTGATAAAGT+TGG - chr6_1:7182228-7182247 Msa0871910:CDS 30.0%
! AATGGTTTTTGCAATGAAGT+TGG - chr6_1:7182285-7182304 Msa0871910:CDS 30.0%
!! ATAGAAGTGTTCTCAAAGTT+TGG - chr6_1:7182313-7182332 Msa0871910:CDS 30.0%
TCATCTTCAGATCATGTTAA+TGG - chr6_1:7182372-7182391 Msa0871910:CDS 30.0%
GAGAATGAGAATGAGAATAA+TGG - chr6_1:7182447-7182466 Msa0871910:CDS 30.0%
TAAAGATGTAGTAGTGTTTG+TGG + chr6_1:7181572-7181591 None:intergenic 30.0%
ACACCATTTGAAAAAGACAA+AGG + chr6_1:7181679-7181698 None:intergenic 30.0%
TATTCAAAAACGGTGGAAAT+TGG + chr6_1:7181958-7181977 None:intergenic 30.0%
ATAGGTGAACTTAGGTTTAA+CGG + chr6_1:7182150-7182169 None:intergenic 30.0%
TTAAACCTAAGTTCACCTAT+GGG - chr6_1:7182150-7182169 Msa0871910:CDS 30.0%
AAAATTCACACAAGAACAGA+AGG - chr6_1:7182197-7182216 Msa0871910:CDS 30.0%
!! CATGAATTTGCTGATAAAGT+TGG - chr6_1:7182228-7182247 Msa0871910:CDS 30.0%
! AATGGTTTTTGCAATGAAGT+TGG - chr6_1:7182285-7182304 Msa0871910:CDS 30.0%
!! ATAGAAGTGTTCTCAAAGTT+TGG - chr6_1:7182313-7182332 Msa0871910:CDS 30.0%
TCATCTTCAGATCATGTTAA+TGG - chr6_1:7182372-7182391 Msa0871910:CDS 30.0%
GAGAATGAGAATGAGAATAA+TGG - chr6_1:7182447-7182466 Msa0871910:CDS 30.0%
TGTGTTTGTGTTTGTGTTTG+TGG + chr6_1:7181539-7181558 None:intergenic 35.0%
!! AGATAATGGGTTGTTGGATT+CGG + chr6_1:7181642-7181661 None:intergenic 35.0%
!! TGTTTGAGATAATGGGTTGT+TGG + chr6_1:7181648-7181667 None:intergenic 35.0%
! TACTAACAACGTTGTTGTTG+TGG + chr6_1:7181738-7181757 None:intergenic 35.0%
AAGTAACAACAACGTTGTTG+TGG + chr6_1:7181771-7181790 None:intergenic 35.0%
AGAATGTCTCAAAAATCACG+TGG - chr6_1:7181795-7181814 Msa0871910:CDS 35.0%
!! AAATTGGTTCTTCTGGTTCA+CGG + chr6_1:7181942-7181961 None:intergenic 35.0%
!! AGGTTGATATTCAAAAACGG+TGG + chr6_1:7181965-7181984 None:intergenic 35.0%
GTTAAACCTAAGTTCACCTA+TGG - chr6_1:7182149-7182168 Msa0871910:CDS 35.0%
! CTTTTTCTACTTGTTCCCAT+AGG + chr6_1:7182168-7182187 None:intergenic 35.0%
!! AATTTGCTGATAAAGTTGGG+TGG - chr6_1:7182232-7182251 Msa0871910:CDS 35.0%
AGAGATGAAGAAATGGTGAA+TGG - chr6_1:7182267-7182286 Msa0871910:CDS 35.0%
TGTGTTTGTGTTTGTGTTTG+TGG + chr6_1:7181539-7181558 None:intergenic 35.0%
!! AGATAATGGGTTGTTGGATT+CGG + chr6_1:7181642-7181661 None:intergenic 35.0%
!! TGTTTGAGATAATGGGTTGT+TGG + chr6_1:7181648-7181667 None:intergenic 35.0%
! TACTAACAACGTTGTTGTTG+TGG + chr6_1:7181738-7181757 None:intergenic 35.0%
AAGTAACAACAACGTTGTTG+TGG + chr6_1:7181771-7181790 None:intergenic 35.0%
AGAATGTCTCAAAAATCACG+TGG - chr6_1:7181795-7181814 Msa0871910:CDS 35.0%
!! AAATTGGTTCTTCTGGTTCA+CGG + chr6_1:7181942-7181961 None:intergenic 35.0%
!! AGGTTGATATTCAAAAACGG+TGG + chr6_1:7181965-7181984 None:intergenic 35.0%
GTTAAACCTAAGTTCACCTA+TGG - chr6_1:7182149-7182168 Msa0871910:CDS 35.0%
! CTTTTTCTACTTGTTCCCAT+AGG + chr6_1:7182168-7182187 None:intergenic 35.0%
!! AATTTGCTGATAAAGTTGGG+TGG - chr6_1:7182232-7182251 Msa0871910:CDS 35.0%
AGAGATGAAGAAATGGTGAA+TGG - chr6_1:7182267-7182286 Msa0871910:CDS 35.0%
GTTTGTGTTTGTGTTTGTGG+TGG + chr6_1:7181536-7181555 None:intergenic 40.0%
AGTAGTGTTTGTGGAGTTTG+AGG + chr6_1:7181563-7181582 None:intergenic 40.0%
!! GATAATGGGTTGTTGGATTC+GGG + chr6_1:7181641-7181660 None:intergenic 40.0%
TGTTGTTGTGGTGGTTGTTA+TGG + chr6_1:7181726-7181745 None:intergenic 40.0%
! TAACAACGTTGTTGTTGTGG+TGG + chr6_1:7181735-7181754 None:intergenic 40.0%
GAATTCACAACAACCGTCTA+GGG + chr6_1:7181839-7181858 None:intergenic 40.0%
TGAATTCACAACAACCGTCT+AGG + chr6_1:7181840-7181859 None:intergenic 40.0%
TTGTTCCCATAGGTGAACTT+AGG + chr6_1:7182158-7182177 None:intergenic 40.0%
GCAGAAGAGAGATGAAGAAA+TGG - chr6_1:7182260-7182279 Msa0871910:CDS 40.0%
GATCATGTTAATGGTGACAG+CGG - chr6_1:7182381-7182400 Msa0871910:CDS 40.0%
! CTGCTTGTGCTACTACTAAT+GGG - chr6_1:7182481-7182500 Msa0871910:CDS 40.0%
GTTTGTGTTTGTGTTTGTGG+TGG + chr6_1:7181536-7181555 None:intergenic 40.0%
AGTAGTGTTTGTGGAGTTTG+AGG + chr6_1:7181563-7181582 None:intergenic 40.0%
!! GATAATGGGTTGTTGGATTC+GGG + chr6_1:7181641-7181660 None:intergenic 40.0%
TGTTGTTGTGGTGGTTGTTA+TGG + chr6_1:7181726-7181745 None:intergenic 40.0%
! TAACAACGTTGTTGTTGTGG+TGG + chr6_1:7181735-7181754 None:intergenic 40.0%
GAATTCACAACAACCGTCTA+GGG + chr6_1:7181839-7181858 None:intergenic 40.0%
TGAATTCACAACAACCGTCT+AGG + chr6_1:7181840-7181859 None:intergenic 40.0%
TTGTTCCCATAGGTGAACTT+AGG + chr6_1:7182158-7182177 None:intergenic 40.0%
GCAGAAGAGAGATGAAGAAA+TGG - chr6_1:7182260-7182279 Msa0871910:CDS 40.0%
GATCATGTTAATGGTGACAG+CGG - chr6_1:7182381-7182400 Msa0871910:CDS 40.0%
! CTGCTTGTGCTACTACTAAT+GGG - chr6_1:7182481-7182500 Msa0871910:CDS 40.0%
GGTGGTTGTTATGGTGGTTT+GGG + chr6_1:7181717-7181736 None:intergenic 45.0%
TGGTGGTTGTTATGGTGGTT+TGG + chr6_1:7181718-7181737 None:intergenic 45.0%
TGTTGTGGTGGTTGTTATGG+TGG + chr6_1:7181723-7181742 None:intergenic 45.0%
CAACGTTGTTGTGGCTGTTA+AGG + chr6_1:7181762-7181781 None:intergenic 45.0%
AAAAATCACGTGGCAACCCT+AGG - chr6_1:7181805-7181824 Msa0871910:CDS 45.0%
! TTTTATGGAGGCAGGGTCAT+CGG + chr6_1:7181884-7181903 None:intergenic 45.0%
! ACATGCGGCACATTTTATGG+AGG + chr6_1:7181896-7181915 None:intergenic 45.0%
TCCATAAAATGTGCCGCATG+TGG - chr6_1:7181895-7181914 Msa0871910:CDS 45.0%
! ACCACATGCGGCACATTTTA+TGG + chr6_1:7181899-7181918 None:intergenic 45.0%
! ACGGTGGAAATTGGTTCTTC+TGG + chr6_1:7181949-7181968 None:intergenic 45.0%
! GCTGATGGGTATGATGAGAT+CGG + chr6_1:7182057-7182076 None:intergenic 45.0%
! GCTGCTTGTGCTACTACTAA+TGG - chr6_1:7182480-7182499 Msa0871910:CDS 45.0%
GGTGGTTGTTATGGTGGTTT+GGG + chr6_1:7181717-7181736 None:intergenic 45.0%
TGGTGGTTGTTATGGTGGTT+TGG + chr6_1:7181718-7181737 None:intergenic 45.0%
TGTTGTGGTGGTTGTTATGG+TGG + chr6_1:7181723-7181742 None:intergenic 45.0%
CAACGTTGTTGTGGCTGTTA+AGG + chr6_1:7181762-7181781 None:intergenic 45.0%
AAAAATCACGTGGCAACCCT+AGG - chr6_1:7181805-7181824 Msa0871910:CDS 45.0%
! TTTTATGGAGGCAGGGTCAT+CGG + chr6_1:7181884-7181903 None:intergenic 45.0%
! ACATGCGGCACATTTTATGG+AGG + chr6_1:7181896-7181915 None:intergenic 45.0%
TCCATAAAATGTGCCGCATG+TGG - chr6_1:7181895-7181914 Msa0871910:CDS 45.0%
! ACCACATGCGGCACATTTTA+TGG + chr6_1:7181899-7181918 None:intergenic 45.0%
! ACGGTGGAAATTGGTTCTTC+TGG + chr6_1:7181949-7181968 None:intergenic 45.0%
! GCTGATGGGTATGATGAGAT+CGG + chr6_1:7182057-7182076 None:intergenic 45.0%
! GCTGCTTGTGCTACTACTAA+TGG - chr6_1:7182480-7182499 Msa0871910:CDS 45.0%
! TCGGGTCGGGTTTTCTGATT+CGG + chr6_1:7181623-7181642 None:intergenic 50.0%
! ATGGGTTGTTGGATTCGGGT+CGG + chr6_1:7181637-7181656 None:intergenic 50.0%
! TGTTATGGTGGTTTGGGTGG+TGG + chr6_1:7181711-7181730 None:intergenic 50.0%
! GGTTGTTATGGTGGTTTGGG+TGG + chr6_1:7181714-7181733 None:intergenic 50.0%
! CGGCACATTTTATGGAGGCA+GGG + chr6_1:7181891-7181910 None:intergenic 50.0%
ATTCCGGTGACAACCACATG+CGG + chr6_1:7181911-7181930 None:intergenic 50.0%
GTTCACGGCGGTGAAAATTC+CGG + chr6_1:7181927-7181946 None:intergenic 50.0%
!! TTGGTTCTTCTGGTTCACGG+CGG + chr6_1:7181939-7181958 None:intergenic 50.0%
GAACGTGACTGGAAAAGTGG+TGG + chr6_1:7182012-7182031 None:intergenic 50.0%
GGTGAACGTGACTGGAAAAG+TGG + chr6_1:7182015-7182034 None:intergenic 50.0%
GATGGGTATGATGAGATCGG+TGG + chr6_1:7182054-7182073 None:intergenic 50.0%
GGAGCATATGTGGAGCTGAT+GGG + chr6_1:7182071-7182090 None:intergenic 50.0%
! AGGAGCATATGTGGAGCTGA+TGG + chr6_1:7182072-7182091 None:intergenic 50.0%
!! GAGAGTGCTAGGAGCATATG+TGG + chr6_1:7182081-7182100 None:intergenic 50.0%
CATATGCTCCTAGCACTCTC+CGG - chr6_1:7182081-7182100 Msa0871910:CDS 50.0%
! AGTTGGTCTCTCTATCCCAC+CGG - chr6_1:7182110-7182129 Msa0871910:CDS 50.0%
! AACGGTGCAGCAGTGTTTTC+CGG + chr6_1:7182132-7182151 None:intergenic 50.0%
CTCATTCTCACAACCACCAC+CGG + chr6_1:7182436-7182455 None:intergenic 50.0%
! TCGGGTCGGGTTTTCTGATT+CGG + chr6_1:7181623-7181642 None:intergenic 50.0%
! ATGGGTTGTTGGATTCGGGT+CGG + chr6_1:7181637-7181656 None:intergenic 50.0%
! TGTTATGGTGGTTTGGGTGG+TGG + chr6_1:7181711-7181730 None:intergenic 50.0%
! GGTTGTTATGGTGGTTTGGG+TGG + chr6_1:7181714-7181733 None:intergenic 50.0%
! CGGCACATTTTATGGAGGCA+GGG + chr6_1:7181891-7181910 None:intergenic 50.0%
ATTCCGGTGACAACCACATG+CGG + chr6_1:7181911-7181930 None:intergenic 50.0%
GTTCACGGCGGTGAAAATTC+CGG + chr6_1:7181927-7181946 None:intergenic 50.0%
!! TTGGTTCTTCTGGTTCACGG+CGG + chr6_1:7181939-7181958 None:intergenic 50.0%
GAACGTGACTGGAAAAGTGG+TGG + chr6_1:7182012-7182031 None:intergenic 50.0%
GGTGAACGTGACTGGAAAAG+TGG + chr6_1:7182015-7182034 None:intergenic 50.0%
GATGGGTATGATGAGATCGG+TGG + chr6_1:7182054-7182073 None:intergenic 50.0%
GGAGCATATGTGGAGCTGAT+GGG + chr6_1:7182071-7182090 None:intergenic 50.0%
! AGGAGCATATGTGGAGCTGA+TGG + chr6_1:7182072-7182091 None:intergenic 50.0%
!! GAGAGTGCTAGGAGCATATG+TGG + chr6_1:7182081-7182100 None:intergenic 50.0%
CATATGCTCCTAGCACTCTC+CGG - chr6_1:7182081-7182100 Msa0871910:CDS 50.0%
! AGTTGGTCTCTCTATCCCAC+CGG - chr6_1:7182110-7182129 Msa0871910:CDS 50.0%
! AACGGTGCAGCAGTGTTTTC+CGG + chr6_1:7182132-7182151 None:intergenic 50.0%
CTCATTCTCACAACCACCAC+CGG + chr6_1:7182436-7182455 None:intergenic 50.0%
! CGGGTCGGGTTTTCTGATTC+GGG + chr6_1:7181622-7181641 None:intergenic 55.0%
TGGGTTGTTGGATTCGGGTC+GGG + chr6_1:7181636-7181655 None:intergenic 55.0%
AATCACGTGGCAACCCTAGG+TGG - chr6_1:7181808-7181827 Msa0871910:CDS 55.0%
! GTCTAGGGCATGACCACCTA+GGG + chr6_1:7181824-7181843 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+CGG - chr6_1:7181823-7181842 Msa0871910:CDS 55.0%
! GCGGCACATTTTATGGAGGC+AGG + chr6_1:7181892-7181911 None:intergenic 55.0%
!! GGAAAAGTGGTGGTGGTGGT+GGG + chr6_1:7182002-7182021 None:intergenic 55.0%
!! TGGAAAAGTGGTGGTGGTGG+TGG + chr6_1:7182003-7182022 None:intergenic 55.0%
!! GACTGGAAAAGTGGTGGTGG+TGG + chr6_1:7182006-7182025 None:intergenic 55.0%
CGTGACTGGAAAAGTGGTGG+TGG + chr6_1:7182009-7182028 None:intergenic 55.0%
! GAGAGCTTGGTGAACGTGAC+TGG + chr6_1:7182023-7182042 None:intergenic 55.0%
! GATGAGATCGGTGGTGGTGA+TGG + chr6_1:7182045-7182064 None:intergenic 55.0%
GGGTATGATGAGATCGGTGG+TGG + chr6_1:7182051-7182070 None:intergenic 55.0%
! GTGCAGCAGTGTTTTCCGGT+GGG + chr6_1:7182128-7182147 None:intergenic 55.0%
! CGGGTCGGGTTTTCTGATTC+GGG + chr6_1:7181622-7181641 None:intergenic 55.0%
TGGGTTGTTGGATTCGGGTC+GGG + chr6_1:7181636-7181655 None:intergenic 55.0%
AATCACGTGGCAACCCTAGG+TGG - chr6_1:7181808-7181827 Msa0871910:CDS 55.0%
! GTCTAGGGCATGACCACCTA+GGG + chr6_1:7181824-7181843 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+CGG - chr6_1:7181823-7181842 Msa0871910:CDS 55.0%
! GCGGCACATTTTATGGAGGC+AGG + chr6_1:7181892-7181911 None:intergenic 55.0%
!! GGAAAAGTGGTGGTGGTGGT+GGG + chr6_1:7182002-7182021 None:intergenic 55.0%
!! TGGAAAAGTGGTGGTGGTGG+TGG + chr6_1:7182003-7182022 None:intergenic 55.0%
!! GACTGGAAAAGTGGTGGTGG+TGG + chr6_1:7182006-7182025 None:intergenic 55.0%
CGTGACTGGAAAAGTGGTGG+TGG + chr6_1:7182009-7182028 None:intergenic 55.0%
! GAGAGCTTGGTGAACGTGAC+TGG + chr6_1:7182023-7182042 None:intergenic 55.0%
! GATGAGATCGGTGGTGGTGA+TGG + chr6_1:7182045-7182064 None:intergenic 55.0%
GGGTATGATGAGATCGGTGG+TGG + chr6_1:7182051-7182070 None:intergenic 55.0%
! GTGCAGCAGTGTTTTCCGGT+GGG + chr6_1:7182128-7182147 None:intergenic 55.0%
! CGTCTAGGGCATGACCACCT+AGG + chr6_1:7181825-7181844 None:intergenic 60.0%
TATGGAGGCAGGGTCATCGG+AGG + chr6_1:7181881-7181900 None:intergenic 60.0%
GTGCCGCATGTGGTTGTCAC+CGG - chr6_1:7181905-7181924 Msa0871910:CDS 60.0%
!! AAAGTGGTGGTGGTGGTGGG+TGG + chr6_1:7181999-7182018 None:intergenic 60.0%
!! GGTGGTGGTGATGGAGAGCT+TGG + chr6_1:7182036-7182055 None:intergenic 60.0%
ATGCTCCTAGCACTCTCCGG+CGG - chr6_1:7182084-7182103 Msa0871910:CDS 60.0%
! GGTGCAGCAGTGTTTTCCGG+TGG + chr6_1:7182129-7182148 None:intergenic 60.0%
! CGTCTAGGGCATGACCACCT+AGG + chr6_1:7181825-7181844 None:intergenic 60.0%
TATGGAGGCAGGGTCATCGG+AGG + chr6_1:7181881-7181900 None:intergenic 60.0%
GTGCCGCATGTGGTTGTCAC+CGG - chr6_1:7181905-7181924 Msa0871910:CDS 60.0%
!! AAAGTGGTGGTGGTGGTGGG+TGG + chr6_1:7181999-7182018 None:intergenic 60.0%
!! GGTGGTGGTGATGGAGAGCT+TGG + chr6_1:7182036-7182055 None:intergenic 60.0%
ATGCTCCTAGCACTCTCCGG+CGG - chr6_1:7182084-7182103 Msa0871910:CDS 60.0%
! GGTGCAGCAGTGTTTTCCGG+TGG + chr6_1:7182129-7182148 None:intergenic 60.0%
!! TCGGAGGTGGCGGTTGGTGA+TGG + chr6_1:7181865-7181884 None:intergenic 65.0%
!! GGTGGGTGGTGACGGTGATG+AGG + chr6_1:7181985-7182004 None:intergenic 65.0%
!! GTGGTGGTGGTGGGTGGTGA+CGG + chr6_1:7181993-7182012 None:intergenic 65.0%
AGAGAGACCAACTCCGCCGC+CGG + chr6_1:7182103-7182122 None:intergenic 65.0%
ACCATCCACGGCGGCGTTCA+CGG + chr6_1:7182409-7182428 None:intergenic 65.0%
ACCACCGGAGCCACCATCCA+CGG + chr6_1:7182421-7182440 None:intergenic 65.0%
!! TCGGAGGTGGCGGTTGGTGA+TGG + chr6_1:7181865-7181884 None:intergenic 65.0%
!! GGTGGGTGGTGACGGTGATG+AGG + chr6_1:7181985-7182004 None:intergenic 65.0%
!! GTGGTGGTGGTGGGTGGTGA+CGG + chr6_1:7181993-7182012 None:intergenic 65.0%
AGAGAGACCAACTCCGCCGC+CGG + chr6_1:7182103-7182122 None:intergenic 65.0%
ACCATCCACGGCGGCGTTCA+CGG + chr6_1:7182409-7182428 None:intergenic 65.0%
ACCACCGGAGCCACCATCCA+CGG + chr6_1:7182421-7182440 None:intergenic 65.0%
! GGGTCATCGGAGGTGGCGGT+TGG + chr6_1:7181871-7181890 None:intergenic 70.0%
GGCAGGGTCATCGGAGGTGG+CGG + chr6_1:7181875-7181894 None:intergenic 70.0%
GGAGGCAGGGTCATCGGAGG+TGG + chr6_1:7181878-7181897 None:intergenic 70.0%
CTCCTAGCACTCTCCGGCGG+CGG - chr6_1:7182087-7182106 Msa0871910:CDS 70.0%
GTGAACGCCGCCGTGGATGG+TGG - chr6_1:7182408-7182427 Msa0871910:CDS 70.0%
ACCGGAGCCACCATCCACGG+CGG + chr6_1:7182418-7182437 None:intergenic 70.0%
! GTGGATGGTGGCTCCGGTGG+TGG - chr6_1:7182420-7182439 Msa0871910:CDS 70.0%
! GGGTCATCGGAGGTGGCGGT+TGG + chr6_1:7181871-7181890 None:intergenic 70.0%
GGCAGGGTCATCGGAGGTGG+CGG + chr6_1:7181875-7181894 None:intergenic 70.0%
GGAGGCAGGGTCATCGGAGG+TGG + chr6_1:7181878-7181897 None:intergenic 70.0%
CTCCTAGCACTCTCCGGCGG+CGG - chr6_1:7182087-7182106 Msa0871910:CDS 70.0%
GTGAACGCCGCCGTGGATGG+TGG - chr6_1:7182408-7182427 Msa0871910:CDS 70.0%
ACCGGAGCCACCATCCACGG+CGG + chr6_1:7182418-7182437 None:intergenic 70.0%
! GTGGATGGTGGCTCCGGTGG+TGG - chr6_1:7182420-7182439 Msa0871910:CDS 70.0%
!! CTCCGCCGCCGGAGAGTGCT+AGG + chr6_1:7182092-7182111 None:intergenic 75.0%
GCACTCTCCGGCGGCGGAGT+TGG - chr6_1:7182093-7182112 Msa0871910:CDS 75.0%
GCCGTGAACGCCGCCGTGGA+TGG - chr6_1:7182405-7182424 Msa0871910:CDS 75.0%
! GCCGCCGTGGATGGTGGCTC+CGG - chr6_1:7182414-7182433 Msa0871910:CDS 75.0%
! GCCGTGGATGGTGGCTCCGG+TGG - chr6_1:7182417-7182436 Msa0871910:CDS 75.0%
!! CTCCGCCGCCGGAGAGTGCT+AGG + chr6_1:7182092-7182111 None:intergenic 75.0%
GCACTCTCCGGCGGCGGAGT+TGG - chr6_1:7182093-7182112 Msa0871910:CDS 75.0%
GCCGTGAACGCCGCCGTGGA+TGG - chr6_1:7182405-7182424 Msa0871910:CDS 75.0%
! GCCGCCGTGGATGGTGGCTC+CGG - chr6_1:7182414-7182433 Msa0871910:CDS 75.0%
! GCCGTGGATGGTGGCTCCGG+TGG - chr6_1:7182417-7182436 Msa0871910:CDS 75.0%
! CGGCGCCGTGAACGCCGCCG+TGG - chr6_1:7182401-7182420 Msa0871910:CDS 85.0%
! CGGCGCCGTGAACGCCGCCG+TGG - chr6_1:7182401-7182420 Msa0871910:CDS 85.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 7181511 7182521 7181511 ID=Msa0871910;Name=Msa0871910
chr6_1 mRNA 7181511 7182521 7181511 ID=Msa0871910-mRNA-1;Parent=Msa0871910;Name=Msa0871910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|336
chr6_1 exon 7181511 7182521 7181511 ID=Msa0871910-mRNA-1:exon:2163;Parent=Msa0871910-mRNA-1
chr6_1 CDS 7181511 7182521 7181511 ID=Msa0871910-mRNA-1:cds;Parent=Msa0871910-mRNA-1
Gene Sequence

>Msa0871910

ATGGAAGTTATAACAAAAACAACCACCACAAACACAAACACAAACACAACCTCAAACTCCACAAACACTACTACATCTTTAACAACAAATCTAACAAAAGAACAACAACCCGAATCAGAAAACCCGACCCGAATCCAACAACCCATTATCTCAAACATAACAAAACCTTTGTCTTTTTCAAATGGTGTTCTCAAACGCCACCACCCAAACCACCATAACAACCACCACAACAACAACGTTGTTAGTAACCTTAACAGCCACAACAACGTTGTTGTTACTTACAAAGAATGTCTCAAAAATCACGTGGCAACCCTAGGTGGTCATGCCCTAGACGGTTGTTGTGAATTCATGCCATCACCAACCGCCACCTCCGATGACCCTGCCTCCATAAAATGTGCCGCATGTGGTTGTCACCGGAATTTTCACCGCCGTGAACCAGAAGAACCAATTTCCACCGTTTTTGAATATCAACCTCATCACCGTCACCACCCACCACCACCACCACTTTTCCAGTCACGTTCACCAAGCTCTCCATCACCACCACCGATCTCATCATACCCATCAGCTCCACATATGCTCCTAGCACTCTCCGGCGGCGGAGTTGGTCTCTCTATCCCACCGGAAAACACTGCTGCACCGTTAAACCTAAGTTCACCTATGGGAACAAGTAGAAAAAGATTCAGAACAAAATTCACACAAGAACAGAAGGAAAAGATGCATGAATTTGCTGATAAAGTTGGGTGGAAGATGCAGAAGAGAGATGAAGAAATGGTGAATGGTTTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTCAAAGTTTGGATGCATAATAATAAGAACACTTTGGGAAGAAAATTATCATCTTCAGATCATGTTAATGGTGACAGCGGCGCCGTGAACGCCGCCGTGGATGGTGGCTCCGGTGGTGGTTGTGAGAATGAGAATGAGAATAATGGGAGTAATGTTGCTGCTTGTGCTACTACTAATGGGTCTTCTTCTTCTTCTTGA

Protein sequence

>Msa0871910

MEVITKTTTTNTNTNTTSNSTNTTTSLTTNLTKEQQPESENPTRIQQPIISNITKPLSFSNGVLKRHHPNHHNNHHNNNVVSNLNSHNNVVVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGGGVGLSIPPENTAAPLNLSSPMGTSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSSSDHVNGDSGAVNAAVDGGSGGGCENENENNGSNVAACATTNGSSSSS*