AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959360 MtrunA17_Chr6g0477141 96.660 479 16 0 1 479 1 479 0.0 961
Msa0959360 MtrunA17_Chr6g0478531 46.011 376 183 6 114 473 13 384 1.09e-110 333
Msa0959360 MtrunA17_Chr7g0226311 44.444 306 163 4 137 439 6 307 1.42e-87 271
Msa0959360 MtrunA17_Chr1g0207391 44.079 304 168 1 120 423 68 369 4.37e-85 268
Msa0959360 MtrunA17_Chr1g0172731 41.104 326 187 3 101 423 27 350 6.04e-85 267
Msa0959360 MtrunA17_Chr1g0190171 40.491 326 189 3 101 423 27 350 3.99e-84 265
Msa0959360 MtrunA17_Chr8g0391981 38.974 390 210 8 101 475 38 414 4.86e-82 260
Msa0959360 MtrunA17_Chr1g0182341 38.028 355 178 6 104 446 24 348 5.39e-74 238
Msa0959360 MtrunA17_Chr2g0321401 39.485 233 134 3 101 327 26 257 7.62e-56 187
Msa0959360 MtrunA17_Chr8g0334561 36.910 233 140 3 101 327 27 258 1.07e-52 179
Msa0959360 MtrunA17_Chr2g0285471 42.105 190 103 3 144 327 1 189 1.80e-49 168
Msa0959360 MtrunA17_Chr7g0267201 41.875 160 83 2 147 296 1 160 5.31e-38 137
Msa0959360 MtrunA17_Chr1g0188491 70.930 86 20 2 1 83 1 84 1.09e-31 118
Msa0959360 MtrunA17_Chr4g0018411 47.368 95 46 2 324 416 9 101 4.10e-21 89.7
Msa0959360 MtrunA17_Chr1g0154421 36.508 126 78 2 103 227 9 133 3.23e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959360 AT5G41980.1 43.099 355 176 6 129 473 30 368 1.13e-93 289
Msa0959360 AT1G43722.1 32.692 312 194 7 87 387 13 319 2.47e-42 153
Msa0959360 AT5G28730.1 32.328 232 126 4 141 367 24 229 7.69e-32 124
Msa0959360 AT5G35695.1 45.926 135 61 1 289 423 25 147 3.51e-31 120
Msa0959360 AT5G28950.1 46.875 96 51 0 223 318 1 96 3.56e-24 98.6
Msa0959360 AT3G30525.1 33.750 160 99 3 251 405 1 158 2.08e-19 85.9

Find 119 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACGACTTCTTGAATAAA+TGG 0.143416 6_3:-75973266 Msa0959360:CDS
CTAGCACTGTTGAGAATTTC+TGG 0.157165 6_3:+75974369 None:intergenic
AACAACTCCTTTGCATTTCT+TGG 0.218146 6_3:+75973597 None:intergenic
CTTCTGTATTTAAGTATTCT+TGG 0.218368 6_3:+75973685 None:intergenic
ACCCAGGAGATGTGGATTTA+TGG 0.249166 6_3:-75974694 Msa0959360:CDS
GACTGGTTATTCAGTAGTTT+AGG 0.261552 6_3:-75973405 Msa0959360:CDS
CACCGACTCACGGGTGTTAA+AGG 0.267503 6_3:-75974047 Msa0959360:CDS
CCACCATTTGATTTGATGTT+AGG 0.275789 6_3:-75973132 Msa0959360:three_prime_UTR
ATCATTCGGACCTTGAAATA+TGG 0.298091 6_3:+75974339 None:intergenic
AACGAAAACGCAGCGTTGTT+AGG 0.303358 6_3:-75976732 None:intergenic
AATGAGAATGCAACCTGTTC+TGG 0.328101 6_3:+75973315 None:intergenic
TGAACGTAATAGAGTGATTC+AGG 0.333897 6_3:-75974502 Msa0959360:CDS
GATGATGAGGATGGTTCTTC+AGG 0.349700 6_3:-75975462 Msa0959360:CDS
TCCAACAGCATTGTGCGATT+TGG 0.349755 6_3:-75976614 Msa0959360:intron
ATTATTAAAATGTCGGCTAA+TGG 0.350727 6_3:+75974455 None:intergenic
CTATTATTTCAGGATTGTAT+AGG 0.362544 6_3:-75974223 Msa0959360:intron
ACTGGTTATTCAGTAGTTTA+GGG 0.364419 6_3:-75973404 Msa0959360:CDS
TGTATAGGCTCTGCATATAA+TGG 0.366344 6_3:-75973082 Msa0959360:three_prime_UTR
GCAAATTCCTGCACATGTTC+CGG 0.367277 6_3:-75974185 Msa0959360:CDS
AAGAGGGGCCGAAAAGCTTC+TGG 0.377408 6_3:-75975369 Msa0959360:CDS
CAAAGGAGTTGTTCAATCAT+AGG 0.383328 6_3:-75973587 Msa0959360:CDS
GAACTCGTTGCGGCTGCTGC+TGG 0.386586 6_3:-75974765 Msa0959360:CDS
ACGAAAACGCAGCGTTGTTA+GGG 0.390382 6_3:-75976731 None:intergenic
AGTGAGAATGTGAGGAATCT+TGG 0.393083 6_3:-75973041 Msa0959360:three_prime_UTR
TGCCATAAATCCACATCTCC+TGG 0.393862 6_3:+75974692 None:intergenic
CAGCTAGTGGTGGTCGGAAG+AGG 0.397609 6_3:-75975386 Msa0959360:CDS
GCGAAATCGAGATTGATCTT+TGG 0.398795 6_3:+75974162 None:intergenic
TGATTGGTTACTCAATTTGC+GGG 0.399694 6_3:-75973204 Msa0959360:three_prime_UTR
ACCAGTCATTTCTTTCTTCA+CGG 0.401217 6_3:+75973421 None:intergenic
ATTTGTGGGAAATTCTGATC+TGG 0.404418 6_3:+75974010 None:intergenic
CTGCATCATGGCATCCACTA+TGG 0.407457 6_3:+75975341 None:intergenic
TATTTCTTCAATACCAGAAC+AGG 0.414037 6_3:-75973328 Msa0959360:CDS
TATCACGTAACATGGCTCTT+TGG 0.418711 6_3:+75974583 None:intergenic
TACCAACCTTATGAGTTTAG+AGG 0.421610 6_3:-75973633 Msa0959360:CDS
GATATGTCATTGTCATTGAT+TGG 0.432072 6_3:-75973220 Msa0959360:three_prime_UTR
TGACGACTTCTTGAATAAAT+GGG 0.432370 6_3:-75973265 Msa0959360:CDS
TGAGGAGCAAGTTTCATGAT+TGG 0.432849 6_3:+75973507 None:intergenic
TTGATTGGTTACTCAATTTG+CGG 0.437069 6_3:-75973205 Msa0959360:three_prime_UTR
TCAGGAGCGGTTTCAGCACT+CGG 0.439358 6_3:-75974484 Msa0959360:CDS
AACGAACCTTGAGGAATTTG+TGG 0.440004 6_3:+75973995 None:intergenic
TCAATACATTATTAAAATGT+CGG 0.443527 6_3:+75974448 None:intergenic
GAAGAAATAAATTGAACATC+GGG 0.447295 6_3:+75973342 None:intergenic
AGCTAGTGGTGGTCGGAAGA+GGG 0.455554 6_3:-75975385 Msa0959360:CDS
ATTTGCGGGTTTGTTGCAAA+TGG 0.459079 6_3:-75973190 Msa0959360:three_prime_UTR
GCCATGTTACGTGATACTTC+TGG 0.460394 6_3:-75974576 Msa0959360:CDS
TCACTCTATTACGTTCACTA+TGG 0.463287 6_3:+75974508 None:intergenic
GGGTGATATTGACATGGAAT+TGG 0.463892 6_3:-75974796 Msa0959360:CDS
TCTGGTGATGTTGTATCCTC+AGG 0.466979 6_3:+75974387 None:intergenic
GAGGAGCAAGTTTCATGATT+GGG 0.469428 6_3:+75973508 None:intergenic
TGAACATCGGGAAGTTCGTC+AGG 0.474711 6_3:+75973354 None:intergenic
TGACCTAACATCAAATCAAA+TGG 0.482391 6_3:+75973129 None:intergenic
CTCTTCCGACCACCACTAGC+TGG 0.483214 6_3:+75975387 None:intergenic
TCTTTGGCCGGAACATGTGC+AGG 0.489674 6_3:+75974178 None:intergenic
ATCTGAGAAATACTATCTTA+AGG 0.491213 6_3:-75973557 Msa0959360:CDS
GAGGATGGTTCTTCAGGCTC+AGG 0.500473 6_3:-75975456 Msa0959360:CDS
ACGAACCTTGAGGAATTTGT+GGG 0.504423 6_3:+75973996 None:intergenic
TGACATGGAATTGGATGAGA+TGG 0.507251 6_3:-75974787 Msa0959360:CDS
TTTGTGGGAAATTCTGATCT+GGG 0.513968 6_3:+75974011 None:intergenic
GTGAGAATGTGAGGAATCTT+GGG 0.516289 6_3:-75973040 Msa0959360:three_prime_UTR
TTAGCACCTCTAAACTCATA+AGG 0.519230 6_3:+75973627 None:intergenic
TGGTACCGAACCCCTTGAAA+AGG 0.519547 6_3:+75973651 None:intergenic
ACCAAATCGCACAATGCTGT+TGG 0.523021 6_3:+75976613 None:intergenic
TCTCGATTTCGCAATAAGAA+AGG 0.526197 6_3:-75974151 Msa0959360:CDS
CACGTAACATGGCTCTTTGG+CGG 0.527673 6_3:+75974586 None:intergenic
ACTCCTTTGCATTTCTTGGT+AGG 0.527692 6_3:+75973601 None:intergenic
TACAGATACACCAATCAGCA+TGG 0.529586 6_3:-75974817 Msa0959360:intron
AATTCTGATCTGGGTCATCA+AGG 0.542424 6_3:+75974020 None:intergenic
AAGGTTCTGTCACCGACTCA+CGG 0.543196 6_3:-75974057 Msa0959360:CDS
AATGGGACGAGTGGTGATGC+TGG 0.543414 6_3:-75973248 Msa0959360:exon
AATCGAGATTGATCTTTGGC+CGG 0.545496 6_3:+75974166 None:intergenic
GATTGTATAGGAGTAATTGA+TGG 0.547687 6_3:-75974211 Msa0959360:CDS
TCAATATCACCCATGCTGAT+TGG 0.548167 6_3:+75974807 None:intergenic
AGGTTCTGTCACCGACTCAC+GGG 0.562802 6_3:-75974056 Msa0959360:CDS
CAAGCTAGTGTTCCAGCTAG+TGG 0.563625 6_3:-75975399 Msa0959360:CDS
GGTTTATCACCCAGGAGATG+TGG 0.563874 6_3:-75974702 Msa0959360:CDS
GCCATAAATCCACATCTCCT+GGG 0.566505 6_3:+75974693 None:intergenic
AGCAGCTGCTATCTGCATCA+TGG 0.570810 6_3:+75975329 None:intergenic
AGCTTCTGGTGATGCCATAG+TGG 0.573165 6_3:-75975355 Msa0959360:CDS
CAAGAATACTTAAATACAGA+AGG 0.573953 6_3:-75973684 Msa0959360:CDS
TGAAGAAATAAATTGAACAT+CGG 0.577543 6_3:+75973341 None:intergenic
AAGCAAGTGCATCAATGTGT+TGG 0.578048 6_3:-75975256 Msa0959360:CDS
CAGGAGCGGTTTCAGCACTC+GGG 0.579751 6_3:-75974483 Msa0959360:CDS
GTGACAGAACCTTCCCAACC+AGG 0.582402 6_3:+75974067 None:intergenic
AAATGCAATTATGAAGAATG+AGG 0.583203 6_3:-75975292 Msa0959360:CDS
CTTCCCGTGGTTTATCACCC+AGG 0.584887 6_3:-75974710 Msa0959360:CDS
GCTAGTGGTGGTCGGAAGAG+GGG 0.585645 6_3:-75975384 Msa0959360:CDS
ATGGCTTTCGATGATGAGGA+TGG 0.589950 6_3:-75975471 Msa0959360:CDS
CAGCATGGGTGATATTGACA+TGG 0.591176 6_3:-75974802 Msa0959360:CDS
CTGGTTATTCAGTAGTTTAG+GGG 0.592004 6_3:-75973403 Msa0959360:CDS
CACCTCTAAACTCATAAGGT+TGG 0.594202 6_3:+75973631 None:intergenic
TTTATGGCAGAAGTGCTGAA+TGG 0.597101 6_3:-75974678 Msa0959360:CDS
TGGTTATTCAGTAGTTTAGG+GGG 0.599818 6_3:-75973402 Msa0959360:CDS
AATTTCCCACAAATTCCTCA+AGG 0.601774 6_3:-75974001 Msa0959360:intron
ACAGATACACCAATCAGCAT+GGG 0.605365 6_3:-75974816 Msa0959360:intron
TGCCTTTAACACCCGTGAGT+CGG 0.605648 6_3:+75974045 None:intergenic
TTAAGTATTCTTGGTCAACA+AGG 0.607070 6_3:+75973694 None:intergenic
TTGTCGTGAAATGTTGCGGA+TGG 0.607611 6_3:-75974643 Msa0959360:CDS
TCACCTACCAAGAAATGCAA+AGG 0.607831 6_3:-75973604 Msa0959360:CDS
GTGTTCCAGCTAGTGGTGGT+CGG 0.615184 6_3:-75975392 Msa0959360:CDS
ATCTCCTGGGTGATAAACCA+CGG 0.624115 6_3:+75974706 None:intergenic
TGCAAATGATTGAATCACAC+AGG 0.624451 6_3:+75973167 None:intergenic
ACCAGAAGTATCACGTAACA+TGG 0.625814 6_3:+75974575 None:intergenic
CCTAACATCAAATCAAATGG+TGG 0.627956 6_3:+75973132 None:intergenic
GATGATGCGAACATGTTAGA+CGG 0.630185 6_3:-75975432 Msa0959360:CDS
GGTGATGTTGTATCCTCAGG+AGG 0.631551 6_3:+75974390 None:intergenic
CTAACAAAACAGCCTTCCCG+TGG 0.634429 6_3:-75974723 Msa0959360:CDS
GTTAATGGCTTTCGATGATG+AGG 0.645112 6_3:-75975475 Msa0959360:exon
TCTCCTGGGTGATAAACCAC+GGG 0.646361 6_3:+75974707 None:intergenic
GCTAGTGTTCCAGCTAGTGG+TGG 0.652322 6_3:-75975396 Msa0959360:CDS
CTGGGTGATAAACCACGGGA+AGG 0.661556 6_3:+75974711 None:intergenic
GGTTATTCAGTAGTTTAGGG+GGG 0.667813 6_3:-75973401 Msa0959360:CDS
GGATGAGATGGAACTCGTTG+CGG 0.671380 6_3:-75974775 Msa0959360:CDS
GTAATAGAGTGATTCAGGAG+CGG 0.681046 6_3:-75974497 Msa0959360:CDS
TCTTGAATAAATGGGACGAG+TGG 0.681165 6_3:-75973257 Msa0959360:CDS
CATGTATTTCAGAAGCTGTG+TGG 0.686088 6_3:-75974615 Msa0959360:CDS
GCCGTGAAGAAAGAAATGAC+TGG 0.693527 6_3:-75973422 Msa0959360:CDS
TGAGTCTGAAAAGAATACTG+AGG 0.711551 6_3:+75973489 None:intergenic
AGTCATTTCTTTCTTCACGG+CGG 0.739854 6_3:+75973424 None:intergenic
AATGTGTTGGATGAGATGCA+AGG 0.778166 6_3:-75975243 Msa0959360:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTACTAATTTTGATTAT+TGG - chr6_3:75973643-75973662 Msa0959360:CDS 10.0%
!! AAATATAAATTGATTAACAT+GGG + chr6_3:75974737-75974756 None:intergenic 10.0%
!! AAAATATAAATTGATTAACA+TGG + chr6_3:75974738-75974757 None:intergenic 10.0%
!!! CTTTATTTTGATTTTTAACA+TGG + chr6_3:75973153-75973172 None:intergenic 15.0%
!!! TTTTTTTGTTATTGCATTTT+TGG - chr6_3:75973205-75973224 Msa0959360:three_prime_UTR 15.0%
!!! AATTTCTGTGTTTTATATAT+TGG - chr6_3:75973430-75973449 Msa0959360:CDS 15.0%
!! TCAATACATTATTAAAATGT+CGG + chr6_3:75975248-75975267 None:intergenic 15.0%
!! AACTATTAATTTATTTCCTT+TGG - chr6_3:75975953-75975972 Msa0959360:intron 15.0%
!! AAAATTATGAGAAATGGAAA+AGG + chr6_3:75973120-75973139 None:intergenic 20.0%
!!! TTTGATTTTTAACATGGAAT+TGG + chr6_3:75973147-75973166 None:intergenic 20.0%
!!! ATTTGAAGTTATTTGTGTTT+TGG - chr6_3:75973382-75973401 Msa0959360:CDS 20.0%
!!! TTTGAAGTTATTTGTGTTTT+GGG - chr6_3:75973383-75973402 Msa0959360:CDS 20.0%
!!! TTGAGAATTTGATTCTTTTT+AGG - chr6_3:75973523-75973542 Msa0959360:CDS 20.0%
!!! TGAGAATTTGATTCTTTTTA+GGG - chr6_3:75973524-75973543 Msa0959360:CDS 20.0%
!!! TTGCCAATTTGATTTTTTTT+TGG - chr6_3:75973705-75973724 Msa0959360:CDS 20.0%
!!! TGCCAATTTGATTTTTTTTT+GGG - chr6_3:75973706-75973725 Msa0959360:CDS 20.0%
!! ATTACCAAAATACAAATAAC+CGG + chr6_3:75973746-75973765 None:intergenic 20.0%
!!! TGTTACATATATAGGTTTTA+GGG - chr6_3:75973936-75973955 Msa0959360:intron 20.0%
!!! CATTGAAAATTTGAAGTTTT+GGG - chr6_3:75974038-75974057 Msa0959360:CDS 20.0%
!!! ATTGAAAATTTGAAGTTTTG+GGG - chr6_3:75974039-75974058 Msa0959360:CDS 20.0%
!!! ATTTTCTCAAACAATTCAAA+TGG + chr6_3:75974604-75974623 None:intergenic 20.0%
!!! TAGATTTTATCCATATTTCA+AGG - chr6_3:75975344-75975363 Msa0959360:CDS 20.0%
!! CTTAAAAGATCATACTAATA+TGG + chr6_3:75975396-75975415 None:intergenic 20.0%
!! GAAAAATGAATATAAACTGA+AGG + chr6_3:75975607-75975626 None:intergenic 20.0%
!! TGAAGAAATAAATTGAACAT+CGG + chr6_3:75976355-75976374 None:intergenic 20.0%
!!! GTTAACATGAAATTTTGTAT+AGG - chr6_3:75976596-75976615 Msa0959360:intron 20.0%
!! AATCTAAAATGGGTCAAAAA+AGG + chr6_3:75973178-75973197 None:intergenic 25.0%
!! TTTTGACCCATTTTAGATTT+TGG - chr6_3:75973179-75973198 Msa0959360:three_prime_UTR 25.0%
!! TTTGACCCATTTTAGATTTT+GGG - chr6_3:75973180-75973199 Msa0959360:three_prime_UTR 25.0%
!! AAAACCCCAAAATCTAAAAT+GGG + chr6_3:75973188-75973207 None:intergenic 25.0%
! AAAAACCCCAAAATCTAAAA+TGG + chr6_3:75973189-75973208 None:intergenic 25.0%
!! TGTTGAGAATTTGAAGTTAT+TGG - chr6_3:75973255-75973274 Msa0959360:CDS 25.0%
!! GTTGAGAATTTGAAGTTATT+GGG - chr6_3:75973256-75973275 Msa0959360:CDS 25.0%
!! AATTTGAAGTTATTGGGATA+TGG - chr6_3:75973262-75973281 Msa0959360:CDS 25.0%
!! ATTTGAAGTTATTGGGATAT+GGG - chr6_3:75973263-75973282 Msa0959360:CDS 25.0%
!! GGTATGATTATTTGTGTTTT+GGG - chr6_3:75973284-75973303 Msa0959360:CDS 25.0%
!! TTTGGGAATTTAACTTTAAC+TGG - chr6_3:75973301-75973320 Msa0959360:CDS 25.0%
!! TTGGGAATTTAACTTTAACT+GGG - chr6_3:75973302-75973321 Msa0959360:CDS 25.0%
!! TTTGGGAATTTAACTTTCAA+TGG - chr6_3:75973400-75973419 Msa0959360:CDS 25.0%
!! TTGGGAATTTAACTTTCAAT+GGG - chr6_3:75973401-75973420 Msa0959360:CDS 25.0%
!! TCTGTGTTTTATATATTGGT+TGG - chr6_3:75973434-75973453 Msa0959360:CDS 25.0%
!!! TTTGATTCTTTTTAGGGTTT+AGG - chr6_3:75973530-75973549 Msa0959360:CDS 25.0%
!!! TTGATTCTTTTTAGGGTTTA+GGG - chr6_3:75973531-75973550 Msa0959360:CDS 25.0%
!!! CTATAGTTTGTTTTGGTTTA+GGG - chr6_3:75973603-75973622 Msa0959360:CDS 25.0%
! CACCCAAAAAAAAATCAAAT+TGG + chr6_3:75973711-75973730 None:intergenic 25.0%
!!! CAATTTGATTTTTTTTTGGG+TGG - chr6_3:75973709-75973728 Msa0959360:intron 25.0%
!!! TTTTTTTGGGTGGTTTTTTT+CGG - chr6_3:75973719-75973738 Msa0959360:intron 25.0%
!! GTGTTACATATATAGGTTTT+AGG - chr6_3:75973935-75973954 Msa0959360:intron 25.0%
!!! GCATTGAAAATTTGAAGTTT+TGG - chr6_3:75974037-75974056 Msa0959360:CDS 25.0%
!!! TTGAAAATTTGAAGTTTTGG+GGG - chr6_3:75974040-75974059 Msa0959360:CDS 25.0%
!!! TTTATGTGTGTTTTGATTCT+TGG - chr6_3:75974120-75974139 Msa0959360:CDS 25.0%
!! TTAAGAATTTGAAACCTGAA+TGG - chr6_3:75974176-75974195 Msa0959360:CDS 25.0%
! AAATGCAATTATGAAGAATG+AGG - chr6_3:75974401-75974420 Msa0959360:CDS 25.0%
!!! AAATCGTCCTTTTTTGTTTT+TGG - chr6_3:75974620-75974639 Msa0959360:CDS 25.0%
! TTCGTAACCAAAAACAAAAA+AGG + chr6_3:75974630-75974649 None:intergenic 25.0%
!!! TTTTTGTTTTTGGTTACGAA+TGG - chr6_3:75974630-75974649 Msa0959360:CDS 25.0%
!!! AGATTTGTTTTATGCATGAT+TGG - chr6_3:75974796-75974815 Msa0959360:CDS 25.0%
!! ATTATTAAAATGTCGGCTAA+TGG + chr6_3:75975241-75975260 None:intergenic 25.0%
! ACAATCCTGAAATAATAGTA+GGG + chr6_3:75975468-75975487 None:intergenic 25.0%
! TACAATCCTGAAATAATAGT+AGG + chr6_3:75975469-75975488 None:intergenic 25.0%
! CTATTATTTCAGGATTGTAT+AGG - chr6_3:75975470-75975489 Msa0959360:CDS 25.0%
!!! CAGTTTATATTCATTTTTCC+TGG - chr6_3:75975608-75975627 Msa0959360:intron 25.0%
!!! TTATATTCATTTTTCCTGGT+TGG - chr6_3:75975612-75975631 Msa0959360:intron 25.0%
!!! TATATTCATTTTTCCTGGTT+GGG - chr6_3:75975613-75975632 Msa0959360:intron 25.0%
! CTTCTGTATTTAAGTATTCT+TGG + chr6_3:75976011-75976030 None:intergenic 25.0%
! CAAGAATACTTAAATACAGA+AGG - chr6_3:75976009-75976028 Msa0959360:intron 25.0%
! ATCTGAGAAATACTATCTTA+AGG - chr6_3:75976136-75976155 Msa0959360:intron 25.0%
! GAAGAAATAAATTGAACATC+GGG + chr6_3:75976354-75976373 None:intergenic 25.0%
!! TTTTGCATAGTAATGCAATT+AGG + chr6_3:75976725-75976744 None:intergenic 25.0%
!!! TGTTTTTGAGTGAAGTAAAG+TGG + chr6_3:75973012-75973031 None:intergenic 30.0%
GAAATGGAAAAGGAAGAAAA+GGG + chr6_3:75973110-75973129 None:intergenic 30.0%
AGAAATGGAAAAGGAAGAAA+AGG + chr6_3:75973111-75973130 None:intergenic 30.0%
GGAACGAAAATTATGAGAAA+TGG + chr6_3:75973126-75973145 None:intergenic 30.0%
! TTGACCCATTTTAGATTTTG+GGG - chr6_3:75973181-75973200 Msa0959360:three_prime_UTR 30.0%
! GGGTATGATTATTTGTGTTT+TGG - chr6_3:75973283-75973302 Msa0959360:CDS 30.0%
! TGGGAATTTAACTTTAACTG+GGG - chr6_3:75973303-75973322 Msa0959360:CDS 30.0%
! TTGAATTTCTGTGTGCTTTT+AGG - chr6_3:75973328-75973347 Msa0959360:CDS 30.0%
! TGAATTTCTGTGTGCTTTTA+GGG - chr6_3:75973329-75973348 Msa0959360:CDS 30.0%
! TGGGAATTTAACTTTCAATG+GGG - chr6_3:75973402-75973421 Msa0959360:CDS 30.0%
!!! GTTATTTGTGTTTTGGTTCT+TGG - chr6_3:75973557-75973576 Msa0959360:CDS 30.0%
!!! CATTGTGCTATAGTTTGTTT+TGG - chr6_3:75973596-75973615 Msa0959360:CDS 30.0%
!!! GCTATAGTTTGTTTTGGTTT+AGG - chr6_3:75973602-75973621 Msa0959360:CDS 30.0%
!!! TTTTTTGGGTGGTTTTTTTC+GGG - chr6_3:75973720-75973739 Msa0959360:intron 30.0%
!! TTTGGTAATTTTCCTCTAAC+TGG - chr6_3:75973757-75973776 Msa0959360:intron 30.0%
!! TTGGTAATTTTCCTCTAACT+GGG - chr6_3:75973758-75973777 Msa0959360:intron 30.0%
! AGTGTAGGTGTTACATATAT+AGG - chr6_3:75973928-75973947 Msa0959360:intron 30.0%
CGTCTTAAATTTCTGTGTAT+TGG - chr6_3:75973978-75973997 Msa0959360:intron 30.0%
!!! AAGGGTTTACTTTTTTGCTT+TGG - chr6_3:75974482-75974501 Msa0959360:CDS 30.0%
TTCTCAAACAATTCAAATGG+AGG + chr6_3:75974601-75974620 None:intergenic 30.0%
CAGTCTAGTTAACTATACAA+AGG + chr6_3:75974663-75974682 None:intergenic 30.0%
TATAGTTAACTAGACTGCAA+AGG - chr6_3:75974666-75974685 Msa0959360:CDS 30.0%
! AATCTAGTTTGAAAACAGAG+AGG + chr6_3:75974781-75974800 None:intergenic 30.0%
! GTTTTATGCATGATTGGAAT+TGG - chr6_3:75974802-75974821 Msa0959360:CDS 30.0%
!! GCGATATTTTTAAACGTCAT+TGG - chr6_3:75975162-75975181 Msa0959360:intron 30.0%
GAAGTAGCTAAATGATCATT+CGG + chr6_3:75975371-75975390 None:intergenic 30.0%
TGAAATAATAGTAGGGAGAT+GGG + chr6_3:75975461-75975480 None:intergenic 30.0%
GATTGTATAGGAGTAATTGA+TGG - chr6_3:75975482-75975501 Msa0959360:intron 30.0%
! TTCCTTTGGATTTGTTTCAT+AGG - chr6_3:75975967-75975986 Msa0959360:intron 30.0%
TTCCTATGAAACAAATCCAA+AGG + chr6_3:75975972-75975991 None:intergenic 30.0%
TTAAGTATTCTTGGTCAACA+AGG + chr6_3:75976002-75976021 None:intergenic 30.0%
ACTGGTTATTCAGTAGTTTA+GGG - chr6_3:75976289-75976308 Msa0959360:intron 30.0%
TATTTCTTCAATACCAGAAC+AGG - chr6_3:75976365-75976384 Msa0959360:intron 30.0%
TTGACGACTTCTTGAATAAA+TGG - chr6_3:75976427-75976446 Msa0959360:intron 30.0%
TGACGACTTCTTGAATAAAT+GGG - chr6_3:75976428-75976447 Msa0959360:intron 30.0%
GATATGTCATTGTCATTGAT+TGG - chr6_3:75976473-75976492 Msa0959360:intron 30.0%
! TTGATTGGTTACTCAATTTG+CGG - chr6_3:75976488-75976507 Msa0959360:intron 30.0%
TGACCTAACATCAAATCAAA+TGG + chr6_3:75976567-75976586 None:intergenic 30.0%
! TTTTATTGAGTGAGAATGTG+AGG - chr6_3:75976644-75976663 Msa0959360:five_prime_UTR 30.0%
!!! TTCTTTTTAGGGTTTAGGGT+TGG - chr6_3:75973535-75973554 Msa0959360:CDS 35.0%
!!! AGGGTTGGTTATTTGTGTTT+TGG - chr6_3:75973550-75973569 Msa0959360:CDS 35.0%
! TGGTAATTTTCCTCTAACTG+GGG - chr6_3:75973759-75973778 Msa0959360:intron 35.0%
AAATTCAAAACCCCAGTTAG+AGG + chr6_3:75973772-75973791 None:intergenic 35.0%
! ACATGTTCAATCTGAAGTGT+AGG - chr6_3:75973913-75973932 Msa0959360:intron 35.0%
!!! AGGTTTTAGGGTTTTAGTGT+TGG - chr6_3:75973948-75973967 Msa0959360:intron 35.0%
! TACACAGAAATTTAAGACGC+CGG + chr6_3:75973977-75973996 None:intergenic 35.0%
!!! TTTGAAGTTTTGGGGGTTTT+AGG - chr6_3:75974047-75974066 Msa0959360:CDS 35.0%
!!! TTGAAGTTTTGGGGGTTTTA+GGG - chr6_3:75974048-75974067 Msa0959360:CDS 35.0%
GCTGGTTATTTGTGTTCTTT+CGG - chr6_3:75974070-75974089 Msa0959360:CDS 35.0%
! TCGGTAATTTTCCTAGAAAC+AGG - chr6_3:75974089-75974108 Msa0959360:CDS 35.0%
! CGGTAATTTTCCTAGAAACA+GGG - chr6_3:75974090-75974109 Msa0959360:CDS 35.0%
! AAATTGAAAGCCCTGTTTCT+AGG + chr6_3:75974103-75974122 None:intergenic 35.0%
AAAAACACAGCAAACCATTC+AGG + chr6_3:75974193-75974212 None:intergenic 35.0%
!! CTGTGTTTTTGCAGTGTTAA+TGG - chr6_3:75974203-75974222 Msa0959360:CDS 35.0%
TAATAGAGATGAAAACCTCC+CGG + chr6_3:75974533-75974552 None:intergenic 35.0%
AGAGTGAAAAAAGAATGCCA+TGG - chr6_3:75974553-75974572 Msa0959360:CDS 35.0%
! TTGAAAACAGAGAGGTATGT+TGG + chr6_3:75974773-75974792 None:intergenic 35.0%
! ACTTTTGTCGTGAAATGTTG+CGG - chr6_3:75975046-75975065 Msa0959360:intron 35.0%
TCACTCTATTACGTTCACTA+TGG + chr6_3:75975188-75975207 None:intergenic 35.0%
TGAACGTAATAGAGTGATTC+AGG - chr6_3:75975191-75975210 Msa0959360:intron 35.0%
ATCATTCGGACCTTGAAATA+TGG + chr6_3:75975357-75975376 None:intergenic 35.0%
AGCACATAGAGTGATAAACA+GGG + chr6_3:75975423-75975442 None:intergenic 35.0%
TAGCACATAGAGTGATAAAC+AGG + chr6_3:75975424-75975443 None:intergenic 35.0%
CTGAAATAATAGTAGGGAGA+TGG + chr6_3:75975462-75975481 None:intergenic 35.0%
CATCTCCCTACTATTATTTC+AGG - chr6_3:75975460-75975479 Msa0959360:CDS 35.0%
TCTCGATTTCGCAATAAGAA+AGG - chr6_3:75975542-75975561 Msa0959360:intron 35.0%
TTTGTGGGAAATTCTGATCT+GGG + chr6_3:75975685-75975704 None:intergenic 35.0%
ATTTGTGGGAAATTCTGATC+TGG + chr6_3:75975686-75975705 None:intergenic 35.0%
AATTTCCCACAAATTCCTCA+AGG - chr6_3:75975692-75975711 Msa0959360:intron 35.0%
ATAAATGCTAACGAACCTTG+AGG + chr6_3:75975710-75975729 None:intergenic 35.0%
TACTACACAGATAACTGACA+AGG + chr6_3:75975760-75975779 None:intergenic 35.0%
CTATGAAACACAAACTCACA+TGG + chr6_3:75975909-75975928 None:intergenic 35.0%
CATGTGAGTTTGTGTTTCAT+AGG - chr6_3:75975907-75975926 Msa0959360:intron 35.0%
! GATTTCTTGCTCCTTTTCAA+GGG - chr6_3:75976031-75976050 Msa0959360:intron 35.0%
!! ATTTCTTGCTCCTTTTCAAG+GGG - chr6_3:75976032-75976051 Msa0959360:intron 35.0%
TACCAACCTTATGAGTTTAG+AGG - chr6_3:75976060-75976079 Msa0959360:intron 35.0%
TTAGCACCTCTAAACTCATA+AGG + chr6_3:75976069-75976088 None:intergenic 35.0%
AACAACTCCTTTGCATTTCT+TGG + chr6_3:75976099-75976118 None:intergenic 35.0%
CAAAGGAGTTGTTCAATCAT+AGG - chr6_3:75976106-75976125 Msa0959360:intron 35.0%
TGAGTCTGAAAAGAATACTG+AGG + chr6_3:75976207-75976226 None:intergenic 35.0%
! AGTATTCTTTTCAGACTCAG+CGG - chr6_3:75976208-75976227 Msa0959360:intron 35.0%
ACCAGTCATTTCTTTCTTCA+CGG + chr6_3:75976275-75976294 None:intergenic 35.0%
! GACTGGTTATTCAGTAGTTT+AGG - chr6_3:75976288-75976307 Msa0959360:intron 35.0%
CTGGTTATTCAGTAGTTTAG+GGG - chr6_3:75976290-75976309 Msa0959360:intron 35.0%
TGGTTATTCAGTAGTTTAGG+GGG - chr6_3:75976291-75976310 Msa0959360:intron 35.0%
! TGATTGGTTACTCAATTTGC+GGG - chr6_3:75976489-75976508 Msa0959360:intron 35.0%
TGCAAATGATTGAATCACAC+AGG + chr6_3:75976529-75976548 None:intergenic 35.0%
CCTAACATCAAATCAAATGG+TGG + chr6_3:75976564-75976583 None:intergenic 35.0%
!! CCACCATTTGATTTGATGTT+AGG - chr6_3:75976561-75976580 Msa0959360:intron 35.0%
TGTATAGGCTCTGCATATAA+TGG - chr6_3:75976611-75976630 Msa0959360:intron 35.0%
!!! AGGGTTTTAGTGTTGGTTAC+CGG - chr6_3:75973955-75973974 Msa0959360:intron 40.0%
GTTAATGGCTTTCGATGATG+AGG - chr6_3:75974218-75974237 Msa0959360:intron 40.0%
GATGATGCGAACATGTTAGA+CGG - chr6_3:75974261-75974280 Msa0959360:intron 40.0%
TAGCAGCTGCTTCAAAAATG+AGG - chr6_3:75974376-75974395 Msa0959360:CDS 40.0%
AGCAGCTGCTTCAAAAATGA+GGG - chr6_3:75974377-75974396 Msa0959360:CDS 40.0%
AAGCAAGTGCATCAATGTGT+TGG - chr6_3:75974437-75974456 Msa0959360:CDS 40.0%
AATGTGTTGGATGAGATGCA+AGG - chr6_3:75974450-75974469 Msa0959360:CDS 40.0%
AGATGCAAGGTCTTGATGAA+AGG - chr6_3:75974463-75974482 Msa0959360:CDS 40.0%
GATGCAAGGTCTTGATGAAA+GGG - chr6_3:75974464-75974483 Msa0959360:CDS 40.0%
AATAGAGATGAAAACCTCCC+GGG + chr6_3:75974532-75974551 None:intergenic 40.0%
AAAAAGAATGCCATGGTTGC+AGG - chr6_3:75974560-75974579 Msa0959360:CDS 40.0%
AAAAGAATGCCATGGTTGCA+GGG - chr6_3:75974561-75974580 Msa0959360:CDS 40.0%
! CAAAATTTTCCCTGCAACCA+TGG + chr6_3:75974573-75974592 None:intergenic 40.0%
TACAGATACACCAATCAGCA+TGG - chr6_3:75974876-75974895 Msa0959360:intron 40.0%
ACAGATACACCAATCAGCAT+GGG - chr6_3:75974877-75974896 Msa0959360:intron 40.0%
TCAATATCACCCATGCTGAT+TGG + chr6_3:75974889-75974908 None:intergenic 40.0%
GGGTGATATTGACATGGAAT+TGG - chr6_3:75974897-75974916 Msa0959360:intron 40.0%
TGACATGGAATTGGATGAGA+TGG - chr6_3:75974906-75974925 Msa0959360:intron 40.0%
!! TTTATGGCAGAAGTGCTGAA+TGG - chr6_3:75975015-75975034 Msa0959360:intron 40.0%
CATGTATTTCAGAAGCTGTG+TGG - chr6_3:75975078-75975097 Msa0959360:intron 40.0%
TATCACGTAACATGGCTCTT+TGG + chr6_3:75975113-75975132 None:intergenic 40.0%
!! ACCAGAAGTATCACGTAACA+TGG + chr6_3:75975121-75975140 None:intergenic 40.0%
GTAATAGAGTGATTCAGGAG+CGG - chr6_3:75975196-75975215 Msa0959360:intron 40.0%
! TGAATTTTTGCAACCTCCTG+AGG - chr6_3:75975290-75975309 Msa0959360:CDS 40.0%
CTAGCACTGTTGAGAATTTC+TGG + chr6_3:75975327-75975346 None:intergenic 40.0%
AATCGAGATTGATCTTTGGC+CGG + chr6_3:75975530-75975549 None:intergenic 40.0%
GCGAAATCGAGATTGATCTT+TGG + chr6_3:75975534-75975553 None:intergenic 40.0%
!!! CTGCAAGCACATTTTGAGAT+AGG + chr6_3:75975571-75975590 None:intergenic 40.0%
!! TTCATTTTTCCTGGTTGGGA+AGG - chr6_3:75975617-75975636 Msa0959360:intron 40.0%
AATTCTGATCTGGGTCATCA+AGG + chr6_3:75975676-75975695 None:intergenic 40.0%
ACGAACCTTGAGGAATTTGT+GGG + chr6_3:75975700-75975719 None:intergenic 40.0%
AACGAACCTTGAGGAATTTG+TGG + chr6_3:75975701-75975720 None:intergenic 40.0%
TCTGTGTAGTACAAACACGT+TGG - chr6_3:75975769-75975788 Msa0959360:intron 40.0%
GTACAAACACGTTGGATCAA+AGG - chr6_3:75975777-75975796 Msa0959360:intron 40.0%
! GGATTTCTTGCTCCTTTTCA+AGG - chr6_3:75976030-75976049 Msa0959360:intron 40.0%
CACCTCTAAACTCATAAGGT+TGG + chr6_3:75976065-75976084 None:intergenic 40.0%
TCACCTACCAAGAAATGCAA+AGG - chr6_3:75976089-75976108 Msa0959360:intron 40.0%
ACTCCTTTGCATTTCTTGGT+AGG + chr6_3:75976095-75976114 None:intergenic 40.0%
GAGGAGCAAGTTTCATGATT+GGG + chr6_3:75976188-75976207 None:intergenic 40.0%
TGAGGAGCAAGTTTCATGAT+TGG + chr6_3:75976189-75976208 None:intergenic 40.0%
! GTATTCTTTTCAGACTCAGC+GGG - chr6_3:75976209-75976228 Msa0959360:intron 40.0%
AGTCATTTCTTTCTTCACGG+CGG + chr6_3:75976272-75976291 None:intergenic 40.0%
GGTTATTCAGTAGTTTAGGG+GGG - chr6_3:75976292-75976311 Msa0959360:intron 40.0%
AATGAGAATGCAACCTGTTC+TGG + chr6_3:75976381-75976400 None:intergenic 40.0%
TCTTGAATAAATGGGACGAG+TGG - chr6_3:75976436-75976455 Msa0959360:intron 40.0%
!! ATTTGCGGGTTTGTTGCAAA+TGG - chr6_3:75976503-75976522 Msa0959360:intron 40.0%
AGTGAGAATGTGAGGAATCT+TGG - chr6_3:75976652-75976671 Msa0959360:five_prime_UTR 40.0%
GTGAGAATGTGAGGAATCTT+GGG - chr6_3:75976653-75976672 Msa0959360:five_prime_UTR 40.0%
TCCAACAGCATTGTGCGATT+TGG - chr6_3:75973079-75973098 Msa0959360:three_prime_UTR 45.0%
ACCAAATCGCACAATGCTGT+TGG + chr6_3:75973083-75973102 None:intergenic 45.0%
! CGGGCCGGTTATTTGTATTT+TGG - chr6_3:75973739-75973758 Msa0959360:intron 45.0%
TGATCGACGAAACTTGACAC+CGG - chr6_3:75973802-75973821 Msa0959360:intron 45.0%
ACGAAACTTGACACCGGATA+CGG - chr6_3:75973808-75973827 Msa0959360:intron 45.0%
CTACATGTCAATGCCGTATC+CGG + chr6_3:75973824-75973843 None:intergenic 45.0%
!! CGGCATTGACATGTAGATAG+CGG - chr6_3:75973828-75973847 Msa0959360:intron 45.0%
ATGGCTTTCGATGATGAGGA+TGG - chr6_3:75974222-75974241 Msa0959360:intron 45.0%
GATGATGAGGATGGTTCTTC+AGG - chr6_3:75974231-75974250 Msa0959360:intron 45.0%
! TGGCATCACCAGAAGCTTTT+CGG + chr6_3:75974335-75974354 None:intergenic 45.0%
TTGAGAATCACCCTAATGCC+CGG - chr6_3:75974511-75974530 Msa0959360:CDS 45.0%
CAGCATGGGTGATATTGACA+TGG - chr6_3:75974891-75974910 Msa0959360:intron 45.0%
ATCTCCTGGGTGATAAACCA+CGG + chr6_3:75974990-75975009 None:intergenic 45.0%
ACCCAGGAGATGTGGATTTA+TGG - chr6_3:75974999-75975018 Msa0959360:intron 45.0%
GCCATAAATCCACATCTCCT+GGG + chr6_3:75975003-75975022 None:intergenic 45.0%
TGCCATAAATCCACATCTCC+TGG + chr6_3:75975004-75975023 None:intergenic 45.0%
TTGTCGTGAAATGTTGCGGA+TGG - chr6_3:75975050-75975069 Msa0959360:intron 45.0%
GCCATGTTACGTGATACTTC+TGG - chr6_3:75975117-75975136 Msa0959360:intron 45.0%
! TCTGGTGATGTTGTATCCTC+AGG + chr6_3:75975309-75975328 None:intergenic 45.0%
GCAAATTCCTGCACATGTTC+CGG - chr6_3:75975508-75975527 Msa0959360:intron 45.0%
!! TTGCTCCTTTTCAAGGGGTT+CGG - chr6_3:75976037-75976056 Msa0959360:intron 45.0%
GCCGTGAAGAAAGAAATGAC+TGG - chr6_3:75976271-75976290 Msa0959360:intron 45.0%
!!! TTGGGTGGTTTTTTTCGGGC+CGG - chr6_3:75973724-75973743 Msa0959360:intron 50.0%
GACAACGACACATGTGGATG+TGG + chr6_3:75973888-75973907 None:intergenic 50.0%
TGCACAGACAACGACACATG+TGG + chr6_3:75973894-75973913 None:intergenic 50.0%
!!! AGTTTTGGGGGTTTTAGGGC+TGG - chr6_3:75974052-75974071 Msa0959360:CDS 50.0%
CAAGCTAGTGTTCCAGCTAG+TGG - chr6_3:75974294-75974313 Msa0959360:intron 50.0%
! AGCTTCTGGTGATGCCATAG+TGG - chr6_3:75974338-75974357 Msa0959360:intron 50.0%
CTGCATCATGGCATCCACTA+TGG + chr6_3:75974355-75974374 None:intergenic 50.0%
AGCAGCTGCTATCTGCATCA+TGG + chr6_3:75974367-75974386 None:intergenic 50.0%
TGAGAATCACCCTAATGCCC+GGG - chr6_3:75974512-75974531 Msa0959360:CDS 50.0%
TGAAAACCTCCCGGGCATTA+GGG + chr6_3:75974524-75974543 None:intergenic 50.0%
ATGAAAACCTCCCGGGCATT+AGG + chr6_3:75974525-75974544 None:intergenic 50.0%
GGATGAGATGGAACTCGTTG+CGG - chr6_3:75974918-75974937 Msa0959360:intron 50.0%
CTAACAAAACAGCCTTCCCG+TGG - chr6_3:75974970-75974989 Msa0959360:intron 50.0%
TCTCCTGGGTGATAAACCAC+GGG + chr6_3:75974989-75975008 None:intergenic 50.0%
GGTTTATCACCCAGGAGATG+TGG - chr6_3:75974991-75975010 Msa0959360:intron 50.0%
CACGTAACATGGCTCTTTGG+CGG + chr6_3:75975110-75975129 None:intergenic 50.0%
GGTGATGTTGTATCCTCAGG+AGG + chr6_3:75975306-75975325 None:intergenic 50.0%
!! AAGGTTCTGTCACCGACTCA+CGG - chr6_3:75975636-75975655 Msa0959360:intron 50.0%
TGCCTTTAACACCCGTGAGT+CGG + chr6_3:75975651-75975670 None:intergenic 50.0%
! TGGTACCGAACCCCTTGAAA+AGG + chr6_3:75976045-75976064 None:intergenic 50.0%
TAGTTTAGGGGGGACATTCG+TGG - chr6_3:75976302-75976321 Msa0959360:intron 50.0%
TGAACATCGGGAAGTTCGTC+AGG + chr6_3:75976342-75976361 None:intergenic 50.0%
GAGGATGGTTCTTCAGGCTC+AGG - chr6_3:75974237-75974256 Msa0959360:intron 55.0%
GCTAGTGTTCCAGCTAGTGG+TGG - chr6_3:75974297-75974316 Msa0959360:intron 55.0%
GTGTTCCAGCTAGTGGTGGT+CGG - chr6_3:75974301-75974320 Msa0959360:intron 55.0%
AGCTAGTGGTGGTCGGAAGA+GGG - chr6_3:75974308-75974327 Msa0959360:intron 55.0%
AAGAGGGGCCGAAAAGCTTC+TGG - chr6_3:75974324-75974343 Msa0959360:intron 55.0%
CTGGGTGATAAACCACGGGA+AGG + chr6_3:75974985-75975004 None:intergenic 55.0%
CTTCCCGTGGTTTATCACCC+AGG - chr6_3:75974983-75975002 Msa0959360:intron 55.0%
TCAGGAGCGGTTTCAGCACT+CGG - chr6_3:75975209-75975228 Msa0959360:intron 55.0%
TCTTTGGCCGGAACATGTGC+AGG + chr6_3:75975518-75975537 None:intergenic 55.0%
GTGACAGAACCTTCCCAACC+AGG + chr6_3:75975629-75975648 None:intergenic 55.0%
!! AGGTTCTGTCACCGACTCAC+GGG - chr6_3:75975637-75975656 Msa0959360:intron 55.0%
!! CACCGACTCACGGGTGTTAA+AGG - chr6_3:75975646-75975665 Msa0959360:intron 55.0%
! CGTTGGATCAAAGGCGTGTC+TGG - chr6_3:75975786-75975805 Msa0959360:intron 55.0%
! AATGGGACGAGTGGTGATGC+TGG - chr6_3:75976445-75976464 Msa0959360:intron 55.0%
CTCTTCCGACCACCACTAGC+TGG + chr6_3:75974309-75974328 None:intergenic 60.0%
CAGCTAGTGGTGGTCGGAAG+AGG - chr6_3:75974307-75974326 Msa0959360:intron 60.0%
GCTAGTGGTGGTCGGAAGAG+GGG - chr6_3:75974309-75974328 Msa0959360:intron 60.0%
GAATCACCCTAATGCCCGGG+AGG - chr6_3:75974515-75974534 Msa0959360:CDS 60.0%
CAGGAGCGGTTTCAGCACTC+GGG - chr6_3:75975210-75975229 Msa0959360:intron 60.0%
!! CGTGTCAGTGTCGACCGTGT+CGG + chr6_3:75975815-75975834 None:intergenic 60.0%
GAACTCGTTGCGGCTGCTGC+TGG - chr6_3:75974928-75974947 Msa0959360:intron 65.0%
! GGCGTGTCTGGCTTCCGACA+CGG - chr6_3:75975798-75975817 Msa0959360:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 75972968 75976747 75972968 ID=Msa0959360;Name=Msa0959360
chr6_3 mRNA 75972968 75976747 75972968 ID=Msa0959360-mRNA-1;Parent=Msa0959360;Name=Msa0959360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|0.5|0.4|5|286|479
chr6_3 exon 75972968 75973726 75972968 ID=Msa0959360-mRNA-1:exon:13648;Parent=Msa0959360-mRNA-1
chr6_3 exon 75974002 75974233 75974002 ID=Msa0959360-mRNA-1:exon:13647;Parent=Msa0959360-mRNA-1
chr6_3 exon 75974350 75974834 75974350 ID=Msa0959360-mRNA-1:exon:13646;Parent=Msa0959360-mRNA-1
chr6_3 exon 75975244 75975498 75975244 ID=Msa0959360-mRNA-1:exon:13645;Parent=Msa0959360-mRNA-1
chr6_3 exon 75976615 75976747 75976615 ID=Msa0959360-mRNA-1:exon:13644;Parent=Msa0959360-mRNA-1
chr6_3 five_prime_UTR 75976615 75976747 75976615 ID=Msa0959360-mRNA-1:five_prime_utr;Parent=Msa0959360-mRNA-1
chr6_3 five_prime_UTR 75975494 75975498 75975494 ID=Msa0959360-mRNA-1:five_prime_utr;Parent=Msa0959360-mRNA-1
chr6_3 CDS 75975244 75975493 75975244 ID=Msa0959360-mRNA-1:cds;Parent=Msa0959360-mRNA-1
chr6_3 CDS 75974350 75974834 75974350 ID=Msa0959360-mRNA-1:cds;Parent=Msa0959360-mRNA-1
chr6_3 CDS 75974002 75974233 75974002 ID=Msa0959360-mRNA-1:cds;Parent=Msa0959360-mRNA-1
chr6_3 CDS 75973254 75973726 75973254 ID=Msa0959360-mRNA-1:cds;Parent=Msa0959360-mRNA-1
chr6_3 three_prime_UTR 75972968 75973253 75972968 ID=Msa0959360-mRNA-1:three_prime_utr;Parent=Msa0959360-mRNA-1
Gene Sequence

>Msa0959360

ATGGCTTTCGATGATGAGGATGGTTCTTCAGGCTCAGGAGATGATGCGAACATGTTAGACGGACACAAGCGTCAAGCTAGTGTTCCAGCTAGTGGTGGTCGGAAGAGGGGCCGAAAAGCTTCTGGTGATGCCATAGTGGATGCCATGATGCAGATAGCAGCTGCTTCAAAAATGAGGGCAAATGCAATTATGAAGAATGAGGACAAATTTTCAATAAGCAAGTGCATCAATGTGTTGGATGAGATGCAAGATACACCAATCAGCATGGGTGATATTGACATGGAATTGGATGAGATGGAACTCGTTGCGGCTGCTGCTGGATACTATTATTATAGCTCTCTAACAAAACAGCCTTCCCGTGGTTTATCACCCAGGAGATGTGGATTTATGGCAGAAGTGCTGAATGGACACGATGACTTTTGTCGTGAAATGTTGCGGATGGACAGACATGTATTTCAGAAGCTGTGTGGCATTTTCCGCCAAAGAGCCATGTTACGTGATACTTCTGGTGTAATGATAGAAGAGCAGTTAGCGATATTTTTAAACGTCATTGGCCATAGTGAACGTAATAGAGTGATTCAGGAGCGGTTTCAGCACTCGGGTGAAACCATTAGCCGACATTTTAATAATGTATTGAAAGCTATTAAATCACTTTCGCGTGAATTTTTGCAACCTCCTGAGGATACAACATCACCAGAAATTCTCAACAGTGCTAGATTTTATCCATATTTCAAGGATTGTATAGGAGTAATTGATGGTATGCAAATTCCTGCACATGTTCCGGCCAAAGATCAATCTCGATTTCGCAATAAGAAAGGCATCCTATCTCAAAATGTGCTTGCAGCATGCACATTTGACCTTCAGTTTATATTCATTTTTCCTGGTTGGGAAGGTTCTGTCACCGACTCACGGGTGTTAAAGGCAGTCCTTGATGACCCAGATCAGAATTTCCCACAAATTCCTCAAGGAAAGTATTACCTTGTTGACCAAGAATACTTAAATACAGAAGGATTTCTTGCTCCTTTTCAAGGGGTTCGGTACCAACCTTATGAGTTTAGAGGTGCTAATCACCTACCAAGAAATGCAAAGGAGTTGTTCAATCATAGGCATTGCTATCTGAGAAATACTATCTTAAGGTCATTTAATGTGTTGAAAACTAGATTCCCAATCATGAAACTTGCTCCTCAGTATTCTTTTCAGACTCAGCGGGATATAGTCATAGCTGCATGTGTTTTGCATAATTTCATCCGCCGTGAAGAAAGAAATGACTGGTTATTCAGTAGTTTAGGGGGGACATTCGTGGATGAACAATCAGATCCTGACGAACTTCCCGATGTTCAATTTATTTCTTCAATACCAGAACAGGTTGCATTCTCATTACGTGAATCAGTTTCTGCATCTATGTTTGACGACTTCTTGAATAAATGGGACGAGTGGTGA

Protein sequence

>Msa0959360

MAFDDEDGSSGSGDDANMLDGHKRQASVPASGGRKRGRKASGDAIVDAMMQIAAASKMRANAIMKNEDKFSISKCINVLDEMQDTPISMGDIDMELDEMELVAAAAGYYYYSSLTKQPSRGLSPRRCGFMAEVLNGHDDFCREMLRMDRHVFQKLCGIFRQRAMLRDTSGVMIEEQLAIFLNVIGHSERNRVIQERFQHSGETISRHFNNVLKAIKSLSREFLQPPEDTTSPEILNSARFYPYFKDCIGVIDGMQIPAHVPAKDQSRFRNKKGILSQNVLAACTFDLQFIFIFPGWEGSVTDSRVLKAVLDDPDQNFPQIPQGKYYLVDQEYLNTEGFLAPFQGVRYQPYEFRGANHLPRNAKELFNHRHCYLRNTILRSFNVLKTRFPIMKLAPQYSFQTQRDIVIAACVLHNFIRREERNDWLFSSLGGTFVDEQSDPDELPDVQFISSIPEQVAFSLRESVSASMFDDFLNKWDEW*