AlfalfaGEDB | Msa1336530

M. sativa cultivar zhongmu-4 / Msa1336530

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0071840
PFAM: PF07738.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336530	XP_024633981.1	92.712	590	43	0	1	590	1	590	0.0	1121

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336530	sp\|F4I8I0\|SUN4_ARATH	44.754	610	272	13	15	589	16	595	2.43e-158	469

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336530	A0A396IKV0	92.712	590	43	0	1	590	1	590	0.0	1121

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0093850	Msa1336530	0.810061	1.390108e-50	-8.615850e-47
Msa0108390	Msa1336530	0.809642	1.710383e-50	-8.615850e-47
Msa0154440	Msa1336530	0.806696	7.256285e-50	-8.615850e-47
Msa0187030	Msa1336530	0.815506	8.927178e-52	-8.615850e-47
Msa0207350	Msa1336530	0.800453	1.431173e-48	-8.615850e-47
Msa0261170	Msa1336530	0.806755	7.051552e-50	-8.615850e-47
Msa0317970	Msa1336530	0.800652	1.303279e-48	-8.615850e-47
Msa0341690	Msa1336530	0.809117	2.216796e-50	-8.615850e-47
Msa0342010	Msa1336530	0.807638	4.584858e-50	-8.615850e-47
Msa0378720	Msa1336530	0.801645	8.166165e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1336530	MtrunA17_Chr3g0078011	92.712	590	43	0	1	590	1	590	1121
Msa1336530	MtrunA17_Chr1g0183121	59.022	593	215	10	1	575	1	583	650
Msa1336530	MtrunA17_Chr4g0013761	59.160	595	206	12	1	568	1	585	636

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1336530	AT1G71360.1	44.754	610	272	13	15	589	16	595	2.47e-159	469
Msa1336530	AT1G71360.2	44.754	610	272	13	15	589	42	621	2.80e-158	467
Msa1336530	AT1G22882.1	47.358	492	212	9	122	589	191	659	6.28e-139	419
Msa1336530	AT4G23950.1	42.079	404	211	6	191	587	170	557	9.02e-100	314
Msa1336530	AT4G23950.2	41.975	405	211	7	191	587	170	558	3.36e-98	310

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Find 109 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTATAGCAAAGATAT+AGG	0.394814	tig0001283:-10550	Msa1336530:CDS
AAATCTAAGCAAATCTTTAA+GGG	0.359615	tig0001283:+13569	Msa1336530:intergenic
AACAAGTTGGCAGGATGCCG+GGG	0.522411	tig0001283:-10681	Msa1336530:CDS
AACTTATCCATAAGCTGAAG+AGG	0.543987	tig0001283:+13061	Msa1336530:intergenic
AAGATATTTGTCTTTGTTTC+TGG	0.123881	tig0001283:+11221	Msa1336530:intergenic
AAGCACGGCAACAAGTTGGC+AGG	0.551588	tig0001283:-10690	Msa1336530:CDS
AATATGATTATGAGCATATA+TGG	0.317247	tig0001283:-8726	Msa1336530:CDS
AATGGTAAATAGAAATGTTC+CGG	0.409342	tig0001283:-10725	Msa1336530:CDS
AATTACGCTTCATCATCAAA+AGG	0.550801	tig0001283:-11297	Msa1336530:CDS
AATTGGAGTAATAGTCCATC+CGG	0.497240	tig0001283:-11360	Msa1336530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGCTTATGAATCTAAAG+AGG	+	tig0001283:8793-8812	Msa1336530:intergenic	30.0%
CAACTTCGTTGTATAAACTA+AGG	-	tig0001283:8808-8827	Msa1336530:CDS	30.0%
AAGTGTCACAGATATAACAA+AGG	+	tig0001283:8956-8975	Msa1336530:intergenic	30.0%
ATAAATAACATGGATAACCG+AGG	+	tig0001283:9451-9470	Msa1336530:intergenic	30.0%
AGTATTGTGAAAGAGATTCA+GGG	+	tig0001283:9632-9651	Msa1336530:intergenic	30.0%
TCAACAACATAAAATCCACA+AGG	+	tig0001283:9762-9781	Msa1336530:intergenic	30.0%
TACGGAATATAGAATGAGTT+TGG	-	tig0001283:9790-9809	Msa1336530:intron	30.0%
TTAACAACATAAACTAGCAG+AGG	-	tig0001283:9998-10017	Msa1336530:intron	30.0%
TCAATTATGTAGCACTTGTT+TGG	-	tig0001283:10192-10211	Msa1336530:intron	30.0%
TATAAACTCCAAATCTGATG+AGG	-	tig0001283:10606-10625	Msa1336530:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0001283	gene	8558	13746	8558	ID=Msa1336530;Name=Msa1336530
tig0001283	mRNA	8558	13746	8558	ID=Msa1336530-mRNA-1;Parent=Msa1336530;Name=Msa1336530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=363\|1\|1\|1\|0.75\|0.6\|5\|56\|590
tig0001283	exon	8558	8860	8558	ID=Msa1336530-mRNA-1:exon:763;Parent=Msa1336530-mRNA-1
tig0001283	exon	10278	10363	10278	ID=Msa1336530-mRNA-1:exon:762;Parent=Msa1336530-mRNA-1
tig0001283	exon	10480	11759	10480	ID=Msa1336530-mRNA-1:exon:761;Parent=Msa1336530-mRNA-1
tig0001283	exon	13043	13232	13043	ID=Msa1336530-mRNA-1:exon:760;Parent=Msa1336530-mRNA-1
tig0001283	exon	13414	13746	13414	ID=Msa1336530-mRNA-1:exon:759;Parent=Msa1336530-mRNA-1
tig0001283	five_prime_UTR	13414	13746	13414	ID=Msa1336530-mRNA-1:five_prime_utr;Parent=Msa1336530-mRNA-1
tig0001283	five_prime_UTR	13203	13232	13203	ID=Msa1336530-mRNA-1:five_prime_utr;Parent=Msa1336530-mRNA-1
tig0001283	CDS	13043	13202	13043	ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1
tig0001283	CDS	10480	11759	10480	ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1
tig0001283	CDS	10278	10363	10278	ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1
tig0001283	CDS	8614	8860	8614	ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1
tig0001283	three_prime_UTR	8558	8613	8558	ID=Msa1336530-mRNA-1:three_prime_utr;Parent=Msa1336530-mRNA-1

Gene Sequence

>Msa1336530

ATGCAGAGATCGCGTAAAGCTCTTCAACAAAGAAGATCTTTAGAGAAGGCTGCTAGTGGGAGAAACTGTCTTTATAAAGTTTCTTTGTCTTTGGTTTTTATTTTGTGGGGATTGGTTTTCCTCTTCAGCTTATGGATAAGTTGTGGCAATGGATATGGAGATGTTTCTGGAGAAGTTCCGGCTGCGGTATCAAACTGGAACAAAGATGAGCAAAGGAAGTGTATAAACTCCAAATCTGATGAGGAATATTTGACTAAAGGGCTTGAAGCTTGCGTTCCTTCTGAGACTTTCTACTCTGATCGTGACAAAACCAATGATCTTATTGGTAACTCGCTTGTCGGTGAAGAAAATATAGACGGTTTTGAACACAGTGATAGAGAAAAGTACATTCCACAGAATAGAAAGGAACACGAAGTTGTTGAAAGATTTGAATCTTCTGCGAAAAATGAAAATGATGTGCAGAAATTTGATCGCTTGTCTGCAGCCGTGCCGCTCGGTCTCGACGAATTCAAGAGCAGGGCAGTTAGTTCCAAAATCAATTGGAGTAATAGTCCATCCGGAAGTGTAATACATAGAGTAGAGCCAGGTGGTGATGAATACAATTACGCTTCATCATCAAAAGGTGCAAAAGTGTTAGCTTCTAACAAAGAAGCTAAAGGAGCTTCTAATATCTTAACCAGAAACAAAGACAAATATCTTCGGAATCCGTGTTCTTCGGAAGAGAAATTCGTCGTTATAGAACTTTCAGAAGAGACTTTAGTAGATACAATAGAAATAGCTAACTTTGAGCATTATTCTTCTAATTTAAAAGATTTTGATTTGCATGGTAGTTTGGTTTATCCGACCGACGATTGGATCTTTCTTGGAAATTTTACTGCCTCAAATGTGAAGCAGGCTCAAAGATTTGTTCTTCAGGAACCGAAATGGGTTCGATATCTAAAAGTGAATCTTCAAAGTCACTATGGATCAGAATTTTACTGCACATTGAGCATGGTTGAAGTTTACGGTGTTGATGCTGTTGAGAAAATGCTCGAGGATCTGATATATGCTCAGGAAAATGGTGAAAATAAAGTAGCAATAGCTCCGTCCGATCGTAACTCGTTCGAGAACAGTGATGATGATGTTTGGAAAATCAATTCTGACACTATAGAAAATTCTTCTGAGAACGTTGAAATGGTAAATAGAAATGTTCCGGATCCGATCGATGAAGCACGGCAACAAGTTGGCAGGATGCCGGGGGATACTGTTCTCAAGATTTTGATGCAGAAAGTTCGTTATCTTGACTTGAATTTATCGGTTTTGGAGCAGTATTTGGAGGATTTAAATTCTAGATATGTTAACATTTTCAAAGAGTATAGCAAAGATATAGGAGACAAAGATATAGTTCTACAGATGATCAAAGAAGACATTAGAAGCTTCATTGACAGACAAGATAATATAATGAAAGATGTTAGTGATCTTGATTCTTGGAAGTCTCATTTTTCTATGCAATTGGATCATATACTTAGGGACAATGCTGTTTTGAGGTATAAGGTTGAAAGAGTACTTGAAAATCAAGTATCATTGGAAAACAAGGGTGTATTAGTGTTTTGCGTATGTGTTATTTTTTCATTATTTGCTATATTAAAGCTATCTCTGAATATGATTATGAGCATATATGGAGTATTAAGTTATAATAGAGCAATTAAATCCAGGAAATTTTGCCAATGTAGTTCTTCCTGGTTTCTCTTATTATTGAGTTGTAACATTATTATTTTCATATTAACTACATAA

Protein sequence

>Msa1336530

MQRSRKALQQRRSLEKAASGRNCLYKVSLSLVFILWGLVFLFSLWISCGNGYGDVSGEVPAAVSNWNKDEQRKCINSKSDEEYLTKGLEACVPSETFYSDRDKTNDLIGNSLVGEENIDGFEHSDREKYIPQNRKEHEVVERFESSAKNENDVQKFDRLSAAVPLGLDEFKSRAVSSKINWSNSPSGSVIHRVEPGGDEYNYASSSKGAKVLASNKEAKGASNILTRNKDKYLRNPCSSEEKFVVIELSEETLVDTIEIANFEHYSSNLKDFDLHGSLVYPTDDWIFLGNFTASNVKQAQRFVLQEPKWVRYLKVNLQSHYGSEFYCTLSMVEVYGVDAVEKMLEDLIYAQENGENKVAIAPSDRNSFENSDDDVWKINSDTIENSSENVEMVNRNVPDPIDEARQQVGRMPGDTVLKILMQKVRYLDLNLSVLEQYLEDLNSRYVNIFKEYSKDIGDKDIVLQMIKEDIRSFIDRQDNIMKDVSDLDSWKSHFSMQLDHILRDNAVLRYKVERVLENQVSLENKGVLVFCVCVIFSLFAILKLSLNMIMSIYGVLSYNRAIKSRKFCQCSSSWFLLLLSCNIIIFILTT*