Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336530 | XP_024633981.1 | 92.712 | 590 | 43 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336530 | sp|F4I8I0|SUN4_ARATH | 44.754 | 610 | 272 | 13 | 15 | 589 | 16 | 595 | 2.43e-158 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336530 | A0A396IKV0 | 92.712 | 590 | 43 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1121 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093850 | Msa1336530 | 0.810061 | 1.390108e-50 | -8.615850e-47 |
| Msa0108390 | Msa1336530 | 0.809642 | 1.710383e-50 | -8.615850e-47 |
| Msa0751260 | Msa1336530 | 0.810304 | 1.231806e-50 | -8.615850e-47 |
| Msa0795070 | Msa1336530 | 0.809601 | 1.745424e-50 | -8.615850e-47 |
| Msa0154440 | Msa1336530 | 0.806696 | 7.256285e-50 | -8.615850e-47 |
| Msa0187030 | Msa1336530 | 0.815506 | 8.927178e-52 | -8.615850e-47 |
| Msa0207350 | Msa1336530 | 0.800453 | 1.431173e-48 | -8.615850e-47 |
| Msa1329050 | Msa1336530 | -0.810315 | 1.225505e-50 | -8.615850e-47 |
| Msa1336530 | Msa1418240 | 0.813839 | 2.088510e-51 | -8.615850e-47 |
| Msa1336530 | Msa1461540 | 0.809365 | 1.961188e-50 | -8.615850e-47 |
| Msa0378720 | Msa1336530 | 0.801645 | 8.166165e-49 | -8.615850e-47 |
| Msa1034500 | Msa1336530 | 0.817599 | 3.033667e-52 | -8.615850e-47 |
| Msa0261170 | Msa1336530 | 0.806755 | 7.051552e-50 | -8.615850e-47 |
| Msa0317970 | Msa1336530 | 0.800652 | 1.303279e-48 | -8.615850e-47 |
| Msa0341690 | Msa1336530 | 0.809117 | 2.216796e-50 | -8.615850e-47 |
| Msa0342010 | Msa1336530 | 0.807638 | 4.584858e-50 | -8.615850e-47 |
| Msa1145810 | Msa1336530 | 0.800424 | 1.450545e-48 | -8.615850e-47 |
| Msa1204100 | Msa1336530 | -0.809232 | 2.095147e-50 | -8.615850e-47 |
| Msa1219000 | Msa1336530 | 0.807397 | 5.156194e-50 | -8.615850e-47 |
| Msa0485240 | Msa1336530 | 0.819651 | 1.038414e-52 | -8.615850e-47 |
| Msa0488260 | Msa1336530 | 0.801005 | 1.104232e-48 | -8.615850e-47 |
| Msa0518030 | Msa1336530 | 0.812507 | 4.094611e-51 | -8.615850e-47 |
| Msa0556010 | Msa1336530 | 0.801226 | 9.949326e-49 | -8.615850e-47 |
| Msa0579660 | Msa1336530 | 0.806036 | 9.994209e-50 | -8.615850e-47 |
| Msa0601950 | Msa1336530 | 0.803040 | 4.214706e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336530 | MtrunA17_Chr3g0078011 | 92.712 | 590 | 43 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1121 |
| Msa1336530 | MtrunA17_Chr1g0183121 | 59.022 | 593 | 215 | 10 | 1 | 575 | 1 | 583 | 0.0 | 650 |
| Msa1336530 | MtrunA17_Chr4g0013761 | 59.160 | 595 | 206 | 12 | 1 | 568 | 1 | 585 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1336530 | AT1G71360.1 | 44.754 | 610 | 272 | 13 | 15 | 589 | 16 | 595 | 2.47e-159 | 469 |
| Msa1336530 | AT1G71360.2 | 44.754 | 610 | 272 | 13 | 15 | 589 | 42 | 621 | 2.80e-158 | 467 |
| Msa1336530 | AT1G22882.1 | 47.358 | 492 | 212 | 9 | 122 | 589 | 191 | 659 | 6.28e-139 | 419 |
| Msa1336530 | AT4G23950.1 | 42.079 | 404 | 211 | 6 | 191 | 587 | 170 | 557 | 9.02e-100 | 314 |
| Msa1336530 | AT4G23950.2 | 41.975 | 405 | 211 | 7 | 191 | 587 | 170 | 558 | 3.36e-98 | 310 |
Find 109 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCTAAGCAAATCTTTA+AGG | 0.113024 | tig0001283:+13568 | Msa1336530:intergenic |
| AAGATATTTGTCTTTGTTTC+TGG | 0.123881 | tig0001283:+11221 | Msa1336530:intergenic |
| ACTATTACTCCAATTGATTT+TGG | 0.151170 | tig0001283:+11368 | Msa1336530:intergenic |
| TATTTATATGTAGATGTTTC+TGG | 0.164077 | tig0001283:-11750 | Msa1336530:intron |
| TGACTTGAATTTATCGGTTT+TGG | 0.187353 | tig0001283:-10617 | Msa1336530:CDS |
| AGAATAACCTTTATAGAAAA+TGG | 0.220827 | tig0001283:+13628 | Msa1336530:intergenic |
| TTATAAAGTTTCTTTGTCTT+TGG | 0.237986 | tig0001283:-13109 | Msa1336530:CDS |
| GACAAAACCAATGATCTTAT+TGG | 0.249939 | tig0001283:-11594 | Msa1336530:CDS |
| TTCTCTTTCATTGGTGGAAA+TGG | 0.268861 | tig0001283:-13539 | Msa1336530:five_prime_UTR |
| ACCGACGATTGGATCTTTCT+TGG | 0.277128 | tig0001283:-11054 | Msa1336530:CDS |
| CAAATATTCCTCATCAGATT+TGG | 0.295282 | tig0001283:+11668 | Msa1336530:intergenic |
| GGCTCAAAGATTTGTTCTTC+AGG | 0.304534 | tig0001283:-11004 | Msa1336530:CDS |
| CTGATATATGCTCAGGAAAA+TGG | 0.305632 | tig0001283:-10859 | Msa1336530:CDS |
| AATATGATTATGAGCATATA+TGG | 0.317247 | tig0001283:-8726 | Msa1336530:CDS |
| TTATCTTGACTTGAATTTAT+CGG | 0.318188 | tig0001283:-10623 | Msa1336530:CDS |
| TTGAGCATGGTTGAAGTTTA+CGG | 0.319953 | tig0001283:-10913 | Msa1336530:CDS |
| ACTACATTGGCAAAATTTCC+TGG | 0.328966 | tig0001283:+8674 | Msa1336530:intergenic |
| ATTGGATTGAGTTTGTTTAT+TGG | 0.331662 | tig0001283:-13705 | Msa1336530:five_prime_UTR |
| TTGGATTGAGTTTGTTTATT+GGG | 0.339337 | tig0001283:-13704 | Msa1336530:five_prime_UTR |
| AGGTATCCTTAGCGCACAAC+TGG | 0.346004 | tig0001283:-13454 | Msa1336530:five_prime_UTR |
| CGAGTTACCAATAAGATCAT+TGG | 0.346327 | tig0001283:+11587 | Msa1336530:intergenic |
| TTTAGATATCGAACCCATTT+CGG | 0.354077 | tig0001283:+10979 | Msa1336530:intergenic |
| AAATCTAAGCAAATCTTTAA+GGG | 0.359615 | tig0001283:+13569 | Msa1336530:intergenic |
| TACTCTATGTATTACACTTC+CGG | 0.360472 | tig0001283:+11341 | Msa1336530:intergenic |
| ATGTTAGTGATCTTGATTCT+TGG | 0.364251 | tig0001283:-10334 | Msa1336530:CDS |
| TTTGCCAATGTAGTTCTTCC+TGG | 0.367845 | tig0001283:-8665 | Msa1336530:CDS |
| GAGTTTGTTTATTGGGAAGT+TGG | 0.378407 | tig0001283:-13697 | Msa1336530:five_prime_UTR |
| CAACAAGTTGGCAGGATGCC+GGG | 0.384773 | tig0001283:-10682 | Msa1336530:CDS |
| ATAAGTTGTGGCAATGGATA+TGG | 0.386092 | tig0001283:-13045 | Msa1336530:CDS |
| ATGAGGAATATTTGACTAAA+GGG | 0.392267 | tig0001283:-11659 | Msa1336530:CDS |
| AAAGAGTATAGCAAAGATAT+AGG | 0.394814 | tig0001283:-10550 | Msa1336530:CDS |
| GGTATCTGAGATTCATTTAA+CGG | 0.401646 | tig0001283:-13414 | Msa1336530:five_prime_UTR |
| AGTTTGTTTATTGGGAAGTT+GGG | 0.404582 | tig0001283:-13696 | Msa1336530:five_prime_UTR |
| TCTTCGGAATCCGTGTTCTT+CGG | 0.404866 | tig0001283:-11202 | Msa1336530:CDS |
| AGATGTTTCTGGAGAAGTTC+CGG | 0.406934 | tig0001283:-11739 | Msa1336530:CDS |
| TTGTCTGCAGCCGTGCCGCT+CGG | 0.408230 | tig0001283:-11423 | Msa1336530:CDS |
| AATGGTAAATAGAAATGTTC+CGG | 0.409342 | tig0001283:-10725 | Msa1336530:CDS |
| GTGAATCTTCAAAGTCACTA+TGG | 0.412172 | tig0001283:-10955 | Msa1336530:CDS |
| TTGAGCCTGCTTCACATTTG+AGG | 0.413911 | tig0001283:+11020 | Msa1336530:intergenic |
| TTCCGGCTGCGGTATCAAAC+TGG | 0.417289 | tig0001283:-11722 | Msa1336530:CDS |
| AGAACAGTGATGATGATGTT+TGG | 0.430324 | tig0001283:-10792 | Msa1336530:CDS |
| ACTTGAAAATCAAGTATCAT+TGG | 0.430507 | tig0001283:-8820 | Msa1336530:CDS |
| GCAACAAGTTGGCAGGATGC+CGG | 0.433804 | tig0001283:-10683 | Msa1336530:CDS |
| TGTTCTTCAGGAACCGAAAT+GGG | 0.436891 | tig0001283:-10992 | Msa1336530:CDS |
| TTCTTCTGAGAACGTTGAAA+TGG | 0.441280 | tig0001283:-10743 | Msa1336530:CDS |
| TTGTTCTTCAGGAACCGAAA+TGG | 0.444428 | tig0001283:-10993 | Msa1336530:CDS |
| CAGTTAGTTCCAAAATCAAT+TGG | 0.451584 | tig0001283:-11377 | Msa1336530:CDS |
| TGCAATTGGATCATATACTT+AGG | 0.461963 | tig0001283:-10295 | Msa1336530:CDS |
| TACTGCCTCAAATGTGAAGC+AGG | 0.465363 | tig0001283:-11025 | Msa1336530:CDS |
| TCGTGTTCCTTTCTATTCTG+TGG | 0.466297 | tig0001283:+11507 | Msa1336530:intergenic |
| CTTATTGGTAACTCGCTTGT+CGG | 0.472931 | tig0001283:-11579 | Msa1336530:CDS |
| GATGAGGAATATTTGACTAA+AGG | 0.473117 | tig0001283:-11660 | Msa1336530:CDS |
| GTATCTGAGATTCATTTAAC+GGG | 0.477271 | tig0001283:-13413 | Msa1336530:intron |
| TGGTTTATCCGACCGACGAT+TGG | 0.481196 | tig0001283:-11065 | Msa1336530:CDS |
| CGTGCTTCATCGATCGGATC+CGG | 0.483570 | tig0001283:+10706 | Msa1336530:intergenic |
| TTCCAGTTTGATACCGCAGC+CGG | 0.484813 | tig0001283:+11720 | Msa1336530:intergenic |
| GCAATTGGATCATATACTTA+GGG | 0.488218 | tig0001283:-10294 | Msa1336530:CDS |
| CAACTTCGTTGTATAAACTA+AGG | 0.491880 | tig0001283:-13474 | Msa1336530:five_prime_UTR |
| TTGATGAGATTGGATTGGAT+TGG | 0.495097 | tig0001283:-13723 | Msa1336530:five_prime_UTR |
| AATTGGAGTAATAGTCCATC+CGG | 0.497240 | tig0001283:-11360 | Msa1336530:CDS |
| TGTTGCCGTGCTTCATCGAT+CGG | 0.498822 | tig0001283:+10700 | Msa1336530:intergenic |
| GTCTCGACGAATTCAAGAGC+AGG | 0.503431 | tig0001283:-11401 | Msa1336530:CDS |
| TTCTGGAGAAGTTCCGGCTG+CGG | 0.508381 | tig0001283:-11733 | Msa1336530:CDS |
| GAAACAAAGACAAATATCTT+CGG | 0.521533 | tig0001283:-11218 | Msa1336530:CDS |
| AACAAGTTGGCAGGATGCCG+GGG | 0.522411 | tig0001283:-10681 | Msa1336530:CDS |
| GTCTCCCCAGTTGTGCGCTA+AGG | 0.527976 | tig0001283:+13448 | Msa1336530:intergenic |
| GCTTCTAACAAAGAAGCTAA+AGG | 0.533192 | tig0001283:-11261 | Msa1336530:CDS |
| TCAAGTATCATTGGAAAACA+AGG | 0.535419 | tig0001283:-8811 | Msa1336530:CDS |
| ATAATAGAGCAATTAAATCC+AGG | 0.537461 | tig0001283:-8692 | Msa1336530:CDS |
| CGAGGATCTGATATATGCTC+AGG | 0.542429 | tig0001283:-10866 | Msa1336530:CDS |
| AACTTATCCATAAGCTGAAG+AGG | 0.543987 | tig0001283:+13061 | Msa1336530:intergenic |
| AATTACGCTTCATCATCAAA+AGG | 0.550801 | tig0001283:-11297 | Msa1336530:CDS |
| AAGCACGGCAACAAGTTGGC+AGG | 0.551588 | tig0001283:-10690 | Msa1336530:CDS |
| CTGGGGAGACTAATCCTTCG+AGG | 0.555464 | tig0001283:-13435 | Msa1336530:five_prime_UTR |
| AGTTGCTTATGAATCTAAAG+AGG | 0.558049 | tig0001283:+13492 | Msa1336530:intergenic |
| GTACATTCCACAGAATAGAA+AGG | 0.564916 | tig0001283:-11514 | Msa1336530:CDS |
| GTAATACATAGAGTAGAGCC+AGG | 0.571111 | tig0001283:-11333 | Msa1336530:CDS |
| TCTTTAGAGAAGGCTGCTAG+TGG | 0.572809 | tig0001283:-13144 | Msa1336530:CDS |
| TTCAGCTTATGGATAAGTTG+TGG | 0.578642 | tig0001283:-13057 | Msa1336530:CDS |
| ACAAAGAAGATCTTTAGAGA+AGG | 0.579527 | tig0001283:-13154 | Msa1336530:CDS |
| GTCGGTGAAGAAAATATAGA+CGG | 0.592560 | tig0001283:-11561 | Msa1336530:CDS |
| CTATGTATTACACTTCCGGA+TGG | 0.592663 | tig0001283:+11345 | Msa1336530:intergenic |
| AGTTGTGGCAATGGATATGG+AGG | 0.595571 | tig0001283:-13042 | Msa1336530:intron |
| GATGAAGCACGGCAACAAGT+TGG | 0.597273 | tig0001283:-10694 | Msa1336530:CDS |
| CTTTAGAGAAGGCTGCTAGT+GGG | 0.597719 | tig0001283:-13143 | Msa1336530:CDS |
| AGAAAGATCCAATCGTCGGT+CGG | 0.598915 | tig0001283:+11057 | Msa1336530:intergenic |
| ATCTTGAGAACAGTATCCCC+CGG | 0.601238 | tig0001283:+10664 | Msa1336530:intergenic |
| GGTATCCTTAGCGCACAACT+GGG | 0.602307 | tig0001283:-13453 | Msa1336530:five_prime_UTR |
| TATAAACTCCAAATCTGATG+AGG | 0.605409 | tig0001283:-11676 | Msa1336530:CDS |
| TCAGAGTAGAAAGTCTCAGA+AGG | 0.610282 | tig0001283:+11621 | Msa1336530:intergenic |
| ACTGGAACAAAGATGAGCAA+AGG | 0.611162 | tig0001283:-11704 | Msa1336530:CDS |
| ACAAGTTGGCAGGATGCCGG+GGG | 0.614040 | tig0001283:-10680 | Msa1336530:CDS |
| TTATGGATAAGTTGTGGCAA+TGG | 0.614532 | tig0001283:-13051 | Msa1336530:CDS |
| GAAACCAGGAAGAACTACAT+TGG | 0.615258 | tig0001283:+8661 | Msa1336530:intergenic |
| TTCGTCGAGACCGAGCGGCA+CGG | 0.626595 | tig0001283:+11413 | Msa1336530:intergenic |
| TCCAAGAAAGATCCAATCGT+CGG | 0.633621 | tig0001283:+11053 | Msa1336530:intergenic |
| AATTTCTCTTCCGAAGAACA+CGG | 0.634829 | tig0001283:+11192 | Msa1336530:intergenic |
| CGGATCCGATCGATGAAGCA+CGG | 0.639939 | tig0001283:-10705 | Msa1336530:CDS |
| CAAGTATCATTGGAAAACAA+GGG | 0.641799 | tig0001283:-8810 | Msa1336530:CDS |
| TCTCGACGAATTCAAGAGCA+GGG | 0.643708 | tig0001283:-11400 | Msa1336530:CDS |
| ATGAATCTCAGATACCTCGA+AGG | 0.662179 | tig0001283:+13421 | Msa1336530:intergenic |
| TAATTGTATTCATCACCACC+TGG | 0.670479 | tig0001283:+11315 | Msa1336530:intergenic |
| GTTCTCGAACGAGTTACGAT+CGG | 0.679894 | tig0001283:+10810 | Msa1336530:intergenic |
| TCGAACGAGTTACGATCGGA+CGG | 0.680791 | tig0001283:+10814 | Msa1336530:intergenic |
| GTATCCTTAGCGCACAACTG+GGG | 0.702379 | tig0001283:-13452 | Msa1336530:five_prime_UTR |
| TTGAATTCGTCGAGACCGAG+CGG | 0.704535 | tig0001283:+11408 | Msa1336530:intergenic |
| ACTCAATAATAAGAGAAACC+AGG | 0.707896 | tig0001283:+8647 | Msa1336530:intergenic |
| TGCTGTTGAGAAAATGCTCG+AGG | 0.711275 | tig0001283:-10884 | Msa1336530:CDS |
| ATACATAGAGTAGAGCCAGG+TGG | 0.769561 | tig0001283:-11330 | Msa1336530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTGTTTTTTTTTTTTTTTT+TGG | - | tig0001283:9824-9843 | Msa1336530:intron | 10.0% |
| !!! | CTGTTTTTTTTTTTTTTTTT+GGG | - | tig0001283:9825-9844 | Msa1336530:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTTG+GGG | - | tig0001283:9826-9845 | Msa1336530:intron | 10.0% |
| !! | AATAAATAAATGTATATTAG+TGG | - | tig0001283:13025-13044 | Msa1336530:intron | 10.0% |
| !!! | TTTTAAATTTAGAAAAACTT+TGG | + | tig0001283:13197-13216 | Msa1336530:intergenic | 10.0% |
| !!! | ATTTTTTTAAGATACATAAA+TGG | + | tig0001283:13328-13347 | Msa1336530:intergenic | 10.0% |
| !! | TTGTTAAATATATTGAAGAA+TGG | - | tig0001283:9293-9312 | Msa1336530:intron | 15.0% |
| !!! | TCCATGTTATTTATTTTTAT+AGG | - | tig0001283:9457-9476 | Msa1336530:intron | 15.0% |
| !! | ATGTTGTTGAATATTTATTA+CGG | - | tig0001283:9772-9791 | Msa1336530:intron | 15.0% |
| !! | TTCAAAAATATCAAAATTCT+TGG | - | tig0001283:10149-10168 | Msa1336530:intron | 15.0% |
| !! | TAATATTGTTTATGCTATAA+AGG | + | tig0001283:12124-12143 | Msa1336530:intergenic | 15.0% |
| !! | TTTATAGCATAAACAATATT+AGG | - | tig0001283:12123-12142 | Msa1336530:intron | 15.0% |
| !! | TTATAGCATAAACAATATTA+GGG | - | tig0001283:12124-12143 | Msa1336530:intron | 15.0% |
| !! | TTCTGTTATAGAAATATAAT+AGG | - | tig0001283:12722-12741 | Msa1336530:intron | 15.0% |
| !! | AAACTATTATTAAAATGAGA+CGG | + | tig0001283:12877-12896 | Msa1336530:intergenic | 15.0% |
| !!! | AAGTTACTTTAATTTTATCA+TGG | + | tig0001283:12946-12965 | Msa1336530:intergenic | 15.0% |
| !!! | AAATATTAAATTTTAGCACA+AGG | - | tig0001283:13216-13235 | Msa1336530:intron | 15.0% |
| !!! | TTTTTTATAATTCAGGTATA+AGG | - | tig0001283:13429-13448 | Msa1336530:five_prime_UTR | 15.0% |
| !!! | TTTTTTGTCATTATCTTTCT+TGG | - | tig0001283:8619-8638 | Msa1336530:CDS | 20.0% |
| !! | AGAATAACCTTTATAGAAAA+TGG | + | tig0001283:8657-8676 | Msa1336530:intergenic | 20.0% |
| !! | AAATCTAAGCAAATCTTTAA+GGG | + | tig0001283:8716-8735 | Msa1336530:intergenic | 20.0% |
| !!! | TTCAAAATTTTCTCTTTCAT+TGG | - | tig0001283:8734-8753 | Msa1336530:CDS | 20.0% |
| !! | CAAATATAAAAACCATTTGA+GGG | + | tig0001283:8905-8924 | Msa1336530:intergenic | 20.0% |
| !! | ACAAATATAAAAACCATTTG+AGG | + | tig0001283:8906-8925 | Msa1336530:intergenic | 20.0% |
| !! | TTATAAAGTTTCTTTGTCTT+TGG | - | tig0001283:9173-9192 | Msa1336530:intron | 20.0% |
| !! | GCCTATAAAAATAAATAACA+TGG | + | tig0001283:9461-9480 | Msa1336530:intergenic | 20.0% |
| !! | TAAATACTAATAATACCTTG+TGG | - | tig0001283:9744-9763 | Msa1336530:intron | 20.0% |
| !! | ATCACAATAGAGAAATAATT+TGG | - | tig0001283:10078-10097 | Msa1336530:intron | 20.0% |
| !!! | ATAAGAATGAGTTTAATTTG+TGG | + | tig0001283:10499-10518 | Msa1336530:intergenic | 20.0% |
| !! | TATTTATATGTAGATGTTTC+TGG | - | tig0001283:10532-10551 | Msa1336530:CDS | 20.0% |
| !!! | TTAAAAGATTTTGATTTGCA+TGG | - | tig0001283:11189-11208 | Msa1336530:CDS | 20.0% |
| !!! | TTATCTTGACTTGAATTTAT+CGG | - | tig0001283:11659-11678 | Msa1336530:CDS | 20.0% |
| !! | TATTACCAAAATAATGATCA+AGG | + | tig0001283:11844-11863 | Msa1336530:intergenic | 20.0% |
| !!! | ACAAGCTTTTCTAATTAATT+TGG | - | tig0001283:12037-12056 | Msa1336530:intron | 20.0% |
| !!! | AATTTGGTTTTCTACTATAA+TGG | - | tig0001283:12053-12072 | Msa1336530:intron | 20.0% |
| !!! | ATTTGGTTTTCTACTATAAT+GGG | - | tig0001283:12054-12073 | Msa1336530:intron | 20.0% |
| !!! | TTGATGTTACTTATCTTTTA+AGG | + | tig0001283:12469-12488 | Msa1336530:intergenic | 20.0% |
| !! | TAGTTCAAAAATAGAACAAA+GGG | - | tig0001283:12526-12545 | Msa1336530:intron | 20.0% |
| !! | TAGTTAATAGAGTAATTAAG+TGG | - | tig0001283:12988-13007 | Msa1336530:intron | 20.0% |
| !! | TAAATTTAGAAAAACTTTGG+TGG | + | tig0001283:13194-13213 | Msa1336530:intergenic | 20.0% |
| !! | AATATGATTATGAGCATATA+TGG | - | tig0001283:13556-13575 | Msa1336530:five_prime_UTR | 20.0% |
| !! | ATTGGATTGAGTTTGTTTAT+TGG | - | tig0001283:8577-8596 | Msa1336530:three_prime_UTR | 25.0% |
| !! | TTGGATTGAGTTTGTTTATT+GGG | - | tig0001283:8578-8597 | Msa1336530:three_prime_UTR | 25.0% |
| ! | GAAATCTAAGCAAATCTTTA+AGG | + | tig0001283:8717-8736 | Msa1336530:intergenic | 25.0% |
| !! | AAAATTTTCTCTTTCATTGG+TGG | - | tig0001283:8737-8756 | Msa1336530:CDS | 25.0% |
| ! | TTTGTATTTGTGATCTTACA+TGG | - | tig0001283:8921-8940 | Msa1336530:intron | 25.0% |
| !!! | GATATGTGACTTTTTTTTGT+AGG | - | tig0001283:9050-9069 | Msa1336530:intron | 25.0% |
| !!! | TGTCTTTGGTTTTTATTTTG+TGG | - | tig0001283:9187-9206 | Msa1336530:intron | 25.0% |
| !!! | GTCTTTGGTTTTTATTTTGT+GGG | - | tig0001283:9188-9207 | Msa1336530:intron | 25.0% |
| !!! | TCTTTGGTTTTTATTTTGTG+GGG | - | tig0001283:9189-9208 | Msa1336530:intron | 25.0% |
| !!! | ATTGAAGAATGGTTTTGTTT+TGG | - | tig0001283:9304-9323 | Msa1336530:intron | 25.0% |
| !! | TTGAAAATTGATTTCTTGTC+TGG | - | tig0001283:9425-9444 | Msa1336530:intron | 25.0% |
| !!! | GTTAGTAGTTAATTTGTTAG+AGG | - | tig0001283:9485-9504 | Msa1336530:intron | 25.0% |
| ! | ATTAAAAACATGTACGAACA+AGG | + | tig0001283:9550-9569 | Msa1336530:intergenic | 25.0% |
| !!! | TGTTCGTACATGTTTTTAAT+AGG | - | tig0001283:9550-9569 | Msa1336530:intron | 25.0% |
| !!! | TAGTTAATTTGTTAGAGACA+GGG | - | tig0001283:9583-9602 | Msa1336530:intron | 25.0% |
| ! | TGGTATTAATATGAAACACA+TGG | + | tig0001283:9701-9720 | Msa1336530:intergenic | 25.0% |
| ! | GCTAAAATTGTTAGAAAACA+AGG | - | tig0001283:9848-9867 | Msa1336530:intron | 25.0% |
| ! | ATGAGGAATATTTGACTAAA+GGG | - | tig0001283:10623-10642 | Msa1336530:CDS | 25.0% |
| !!! | ACTATTACTCCAATTGATTT+TGG | + | tig0001283:10917-10936 | Msa1336530:intergenic | 25.0% |
| !! | AAGATATTTGTCTTTGTTTC+TGG | + | tig0001283:11064-11083 | Msa1336530:intergenic | 25.0% |
| ! | GAAACAAAGACAAATATCTT+CGG | - | tig0001283:11064-11083 | Msa1336530:CDS | 25.0% |
| ! | AATGGTAAATAGAAATGTTC+CGG | - | tig0001283:11557-11576 | Msa1336530:CDS | 25.0% |
| !! | AAAGAGTATAGCAAAGATAT+AGG | - | tig0001283:11732-11751 | Msa1336530:CDS | 25.0% |
| !! | TTCTTCCTTGATCATTATTT+TGG | - | tig0001283:11836-11855 | Msa1336530:intron | 25.0% |
| ! | ATCAATTTGATCGTTCAATT+TGG | - | tig0001283:12484-12503 | Msa1336530:intron | 25.0% |
| ! | CTAGTTCAAAAATAGAACAA+AGG | - | tig0001283:12525-12544 | Msa1336530:intron | 25.0% |
| !!! | GTTTATTTTGATGTCACTTT+TGG | + | tig0001283:12634-12653 | Msa1336530:intergenic | 25.0% |
| ! | AGTGACATCAAAATAAACAA+AGG | - | tig0001283:12636-12655 | Msa1336530:intron | 25.0% |
| !! | CTACATTTTTAACCCTTAAA+AGG | - | tig0001283:13250-13269 | Msa1336530:intron | 25.0% |
| ! | ACTTGAAAATCAAGTATCAT+TGG | - | tig0001283:13462-13481 | Msa1336530:five_prime_UTR | 25.0% |
| ! | ATAATAGAGCAATTAAATCC+AGG | - | tig0001283:13590-13609 | Msa1336530:five_prime_UTR | 25.0% |
| ! | AGTTTGTTTATTGGGAAGTT+GGG | - | tig0001283:8586-8605 | Msa1336530:three_prime_UTR | 30.0% |
| ! | CTTTGCTCCATTTTCTATAA+AGG | - | tig0001283:8647-8666 | Msa1336530:CDS | 30.0% |
| AGTTGCTTATGAATCTAAAG+AGG | + | tig0001283:8793-8812 | Msa1336530:intergenic | 30.0% | |
| CAACTTCGTTGTATAAACTA+AGG | - | tig0001283:8808-8827 | Msa1336530:CDS | 30.0% | |
| ! | GGTATCTGAGATTCATTTAA+CGG | - | tig0001283:8868-8887 | Msa1336530:intron | 30.0% |
| ! | GTATCTGAGATTCATTTAAC+GGG | - | tig0001283:8869-8888 | Msa1336530:intron | 30.0% |
| AAGTGTCACAGATATAACAA+AGG | + | tig0001283:8956-8975 | Msa1336530:intergenic | 30.0% | |
| ! | ACAAAGAAGATCTTTAGAGA+AGG | - | tig0001283:9128-9147 | Msa1336530:intron | 30.0% |
| !!! | TTGCTAGTTTTTGCATTAGT+TGG | - | tig0001283:9361-9380 | Msa1336530:intron | 30.0% |
| ! | TGGCTTATGTGATATTTTTC+TGG | - | tig0001283:9384-9403 | Msa1336530:intron | 30.0% |
| ATAAATAACATGGATAACCG+AGG | + | tig0001283:9451-9470 | Msa1336530:intergenic | 30.0% | |
| !! | AGTAGTTAATTTGTTAGAGG+AGG | - | tig0001283:9488-9507 | Msa1336530:intron | 30.0% |
| !! | GTAGTTAATTTGTTAGAGAC+AGG | - | tig0001283:9582-9601 | Msa1336530:intron | 30.0% |
| AGTATTGTGAAAGAGATTCA+GGG | + | tig0001283:9632-9651 | Msa1336530:intergenic | 30.0% | |
| TCAACAACATAAAATCCACA+AGG | + | tig0001283:9762-9781 | Msa1336530:intergenic | 30.0% | |
| TACGGAATATAGAATGAGTT+TGG | - | tig0001283:9790-9809 | Msa1336530:intron | 30.0% | |
| TTAACAACATAAACTAGCAG+AGG | - | tig0001283:9998-10017 | Msa1336530:intron | 30.0% | |
| TCAATTATGTAGCACTTGTT+TGG | - | tig0001283:10192-10211 | Msa1336530:intron | 30.0% | |
| TATAAACTCCAAATCTGATG+AGG | - | tig0001283:10606-10625 | Msa1336530:CDS | 30.0% | |
| CAAATATTCCTCATCAGATT+TGG | + | tig0001283:10617-10636 | Msa1336530:intergenic | 30.0% | |
| GATGAGGAATATTTGACTAA+AGG | - | tig0001283:10622-10641 | Msa1336530:CDS | 30.0% | |
| GACAAAACCAATGATCTTAT+TGG | - | tig0001283:10688-10707 | Msa1336530:CDS | 30.0% | |
| CAGTTAGTTCCAAAATCAAT+TGG | - | tig0001283:10905-10924 | Msa1336530:CDS | 30.0% | |
| TACTCTATGTATTACACTTC+CGG | + | tig0001283:10944-10963 | Msa1336530:intergenic | 30.0% | |
| AATTACGCTTCATCATCAAA+AGG | - | tig0001283:10985-11004 | Msa1336530:CDS | 30.0% | |
| !!! | TTTTGATTTGCATGGTAGTT+TGG | - | tig0001283:11197-11216 | Msa1336530:CDS | 30.0% |
| TTTAGATATCGAACCCATTT+CGG | + | tig0001283:11306-11325 | Msa1336530:intergenic | 30.0% | |
| !!! | TGACTTGAATTTATCGGTTT+TGG | - | tig0001283:11665-11684 | Msa1336530:CDS | 30.0% |
| ATGTTAGTGATCTTGATTCT+TGG | - | tig0001283:11948-11967 | Msa1336530:intron | 30.0% | |
| !! | GTCTCATTTTTCTATGCAAT+TGG | - | tig0001283:11973-11992 | Msa1336530:intron | 30.0% |
| TGCAATTGGATCATATACTT+AGG | - | tig0001283:11987-12006 | Msa1336530:intron | 30.0% | |
| GCAATTGGATCATATACTTA+GGG | - | tig0001283:11988-12007 | Msa1336530:intron | 30.0% | |
| TAATAAGCTGACTGTATGTA+AGG | - | tig0001283:12098-12117 | Msa1336530:intron | 30.0% | |
| GATTAACAAAAGATCAAGAG+TGG | + | tig0001283:12156-12175 | Msa1336530:intergenic | 30.0% | |
| TGGTTTAATCATGGTTGAAT+TGG | + | tig0001283:12355-12374 | Msa1336530:intergenic | 30.0% | |
| ! | TGGTTCAATTGGTTTAATCA+TGG | + | tig0001283:12364-12383 | Msa1336530:intergenic | 30.0% |
| !!! | TTTTTGAGTCATGGTTCAAT+TGG | + | tig0001283:12375-12394 | Msa1336530:intergenic | 30.0% |
| !! | TCTTTTAAGGATCCAATTGA+AGG | + | tig0001283:12456-12475 | Msa1336530:intergenic | 30.0% |
| ATTTCGAGAACTTAACCTAT+GGG | + | tig0001283:12758-12777 | Msa1336530:intergenic | 30.0% | |
| TATTTCGAGAACTTAACCTA+TGG | + | tig0001283:12759-12778 | Msa1336530:intergenic | 30.0% | |
| !! | TGTGAGAAGTTAGTTTGTTA+AGG | - | tig0001283:12797-12816 | Msa1336530:intron | 30.0% |
| !! | GTGAGAAGTTAGTTTGTTAA+GGG | - | tig0001283:12798-12817 | Msa1336530:intron | 30.0% |
| !! | TGAGAAGTTAGTTTGTTAAG+GGG | - | tig0001283:12799-12818 | Msa1336530:intron | 30.0% |
| !!! | AATAGTTTTAGAGTTGTGTG+CGG | - | tig0001283:12889-12908 | Msa1336530:intron | 30.0% |
| AATAGAGTAATTAAGTGGAG+TGG | - | tig0001283:12993-13012 | Msa1336530:intron | 30.0% | |
| !! | AAATTTTAGCACAAGGTAAG+TGG | - | tig0001283:13223-13242 | Msa1336530:intron | 30.0% |
| !! | AATTTTAGCACAAGGTAAGT+GGG | - | tig0001283:13224-13243 | Msa1336530:intron | 30.0% |
| TCAAGTATCATTGGAAAACA+AGG | - | tig0001283:13471-13490 | Msa1336530:five_prime_UTR | 30.0% | |
| CAAGTATCATTGGAAAACAA+GGG | - | tig0001283:13472-13491 | Msa1336530:five_prime_UTR | 30.0% | |
| ACTCAATAATAAGAGAAACC+AGG | + | tig0001283:13638-13657 | Msa1336530:intergenic | 30.0% | |
| ! | TTGATGAGATTGGATTGGAT+TGG | - | tig0001283:8559-8578 | Msa1336530:three_prime_UTR | 35.0% |
| ! | GAGTTTGTTTATTGGGAAGT+TGG | - | tig0001283:8585-8604 | Msa1336530:three_prime_UTR | 35.0% |
| TTCTCTTTCATTGGTGGAAA+TGG | - | tig0001283:8743-8762 | Msa1336530:CDS | 35.0% | |
| TAAAAACCATTTGAGGGAAG+AGG | + | tig0001283:8899-8918 | Msa1336530:intergenic | 35.0% | |
| ! | TTGATGAAGCTTTTCACTGA+TGG | - | tig0001283:9022-9041 | Msa1336530:intron | 35.0% |
| !!! | GGTTTTTATTTTGTGGGGAT+TGG | - | tig0001283:9194-9213 | Msa1336530:intron | 35.0% |
| AACTTATCCATAAGCTGAAG+AGG | + | tig0001283:9224-9243 | Msa1336530:intergenic | 35.0% | |
| TTCAGCTTATGGATAAGTTG+TGG | - | tig0001283:9225-9244 | Msa1336530:intron | 35.0% | |
| TTATGGATAAGTTGTGGCAA+TGG | - | tig0001283:9231-9250 | Msa1336530:intron | 35.0% | |
| ATAAGTTGTGGCAATGGATA+TGG | - | tig0001283:9237-9256 | Msa1336530:intron | 35.0% | |
| !!! | TGTTTTGGTAGTTGACTACT+TGG | - | tig0001283:9319-9338 | Msa1336530:intron | 35.0% |
| !! | CTAGTTTTTGCATTAGTTGG+TGG | - | tig0001283:9364-9383 | Msa1336530:intron | 35.0% |
| AGGTAGAAATGTTAGTACCA+GGG | - | tig0001283:9508-9527 | Msa1336530:intron | 35.0% | |
| AAAAACATGTACGAACAAGG+AGG | + | tig0001283:9547-9566 | Msa1336530:intergenic | 35.0% | |
| ! | GAGTATTGTGAAAGAGATTC+AGG | + | tig0001283:9633-9652 | Msa1336530:intergenic | 35.0% |
| GAAAACAAGGCAGAACTAAA+AGG | - | tig0001283:9861-9880 | Msa1336530:intron | 35.0% | |
| !! | TTTCTAGCTTCGTGAAATCA+CGG | + | tig0001283:10262-10281 | Msa1336530:intergenic | 35.0% |
| ATAAACACACACACAGTGAA+AGG | - | tig0001283:10320-10339 | Msa1336530:CDS | 35.0% | |
| TGCTATGAGTTGTGACAAAA+AGG | - | tig0001283:10405-10424 | Msa1336530:intron | 35.0% | |
| CGAGTTACCAATAAGATCAT+TGG | + | tig0001283:10698-10717 | Msa1336530:intergenic | 35.0% | |
| GTCGGTGAAGAAAATATAGA+CGG | - | tig0001283:10721-10740 | Msa1336530:CDS | 35.0% | |
| GTACATTCCACAGAATAGAA+AGG | - | tig0001283:10768-10787 | Msa1336530:CDS | 35.0% | |
| AATTGGAGTAATAGTCCATC+CGG | - | tig0001283:10922-10941 | Msa1336530:CDS | 35.0% | |
| TAATTGTATTCATCACCACC+TGG | + | tig0001283:10970-10989 | Msa1336530:intergenic | 35.0% | |
| GCTTCTAACAAAGAAGCTAA+AGG | - | tig0001283:11021-11040 | Msa1336530:CDS | 35.0% | |
| AATTTCTCTTCCGAAGAACA+CGG | + | tig0001283:11093-11112 | Msa1336530:intergenic | 35.0% | |
| GTGAATCTTCAAAGTCACTA+TGG | - | tig0001283:11327-11346 | Msa1336530:CDS | 35.0% | |
| ! | ATTTTACTGCACATTGAGCA+TGG | - | tig0001283:11356-11375 | Msa1336530:CDS | 35.0% |
| TTGAGCATGGTTGAAGTTTA+CGG | - | tig0001283:11369-11388 | Msa1336530:CDS | 35.0% | |
| CTGATATATGCTCAGGAAAA+TGG | - | tig0001283:11423-11442 | Msa1336530:CDS | 35.0% | |
| ! | AGAACAGTGATGATGATGTT+TGG | - | tig0001283:11490-11509 | Msa1336530:CDS | 35.0% |
| ! | TTCTTCTGAGAACGTTGAAA+TGG | - | tig0001283:11539-11558 | Msa1336530:CDS | 35.0% |
| CAAAACAGTTGAATCAACTG+TGG | + | tig0001283:12259-12278 | Msa1336530:intergenic | 35.0% | |
| CCATGACTCAAAAATCTAGT+CGG | - | tig0001283:12381-12400 | Msa1336530:intron | 35.0% | |
| CCAATTGAAGGATAACATAC+TGG | + | tig0001283:12444-12463 | Msa1336530:intergenic | 35.0% | |
| CCAGTATGTTATCCTTCAAT+TGG | - | tig0001283:12441-12460 | Msa1336530:intron | 35.0% | |
| ATAGGAAAAACATAGCCCAT+AGG | - | tig0001283:12740-12759 | Msa1336530:intron | 35.0% | |
| !! | GAGAAGTTAGTTTGTTAAGG+GGG | - | tig0001283:12800-12819 | Msa1336530:intron | 35.0% |
| ! | AGGATGAATTTGATAGCAGT+AGG | - | tig0001283:12823-12842 | Msa1336530:intron | 35.0% |
| CAGACAGTTAAAATGAGAGA+AGG | - | tig0001283:13112-13131 | Msa1336530:CDS | 35.0% | |
| ACAGTTAAAATGAGAGAAGG+AGG | - | tig0001283:13115-13134 | Msa1336530:CDS | 35.0% | |
| CAGTTAAAATGAGAGAAGGA+GGG | - | tig0001283:13116-13135 | Msa1336530:CDS | 35.0% | |
| TTTAACCCTTAAAAGGCCAA+AGG | - | tig0001283:13257-13276 | Msa1336530:intron | 35.0% | |
| TTAACCCTTAAAAGGCCAAA+GGG | - | tig0001283:13258-13277 | Msa1336530:intron | 35.0% | |
| ACTACATTGGCAAAATTTCC+TGG | + | tig0001283:13611-13630 | Msa1336530:intergenic | 35.0% | |
| ATGAATCTCAGATACCTCGA+AGG | + | tig0001283:8864-8883 | Msa1336530:intergenic | 40.0% | |
| ! | TGGTTTTCCTCTTCAGCTTA+TGG | - | tig0001283:9214-9233 | Msa1336530:intron | 40.0% |
| ! | ATTGATTTCTTGTCTGGCCT+CGG | - | tig0001283:9431-9450 | Msa1336530:intron | 40.0% |
| GAGGTAGAAATGTTAGTACC+AGG | - | tig0001283:9507-9526 | Msa1336530:intron | 40.0% | |
| TGTTAGAGACAGGGAAATGT+CGG | - | tig0001283:9592-9611 | Msa1336530:intron | 40.0% | |
| GAAGGACTAGATCGATGTTT+GGG | + | tig0001283:9665-9684 | Msa1336530:intergenic | 40.0% | |
| CAAACATCGATCTAGTCCTT+CGG | - | tig0001283:9664-9683 | Msa1336530:intron | 40.0% | |
| AAACATCGATCTAGTCCTTC+GGG | - | tig0001283:9665-9684 | Msa1336530:intron | 40.0% | |
| TCATAAAGCTTCAAGTGCAG+TGG | + | tig0001283:9721-9740 | Msa1336530:intergenic | 40.0% | |
| ! | AGTGAAAGGTACATTGCAGT+CGG | - | tig0001283:10334-10353 | Msa1336530:CDS | 40.0% |
| !! | AGATGTTTCTGGAGAAGTTC+CGG | - | tig0001283:10543-10562 | Msa1336530:CDS | 40.0% |
| ACTGGAACAAAGATGAGCAA+AGG | - | tig0001283:10578-10597 | Msa1336530:CDS | 40.0% | |
| TCAGAGTAGAAAGTCTCAGA+AGG | + | tig0001283:10664-10683 | Msa1336530:intergenic | 40.0% | |
| ! | CTTATTGGTAACTCGCTTGT+CGG | - | tig0001283:10703-10722 | Msa1336530:CDS | 40.0% |
| TCGTGTTCCTTTCTATTCTG+TGG | + | tig0001283:10778-10797 | Msa1336530:intergenic | 40.0% | |
| CTATGTATTACACTTCCGGA+TGG | + | tig0001283:10940-10959 | Msa1336530:intergenic | 40.0% | |
| GTAATACATAGAGTAGAGCC+AGG | - | tig0001283:10949-10968 | Msa1336530:CDS | 40.0% | |
| TCCAAGAAAGATCCAATCGT+CGG | + | tig0001283:11232-11251 | Msa1336530:intergenic | 40.0% | |
| ! | GGCTCAAAGATTTGTTCTTC+AGG | - | tig0001283:11278-11297 | Msa1336530:CDS | 40.0% |
| TTGTTCTTCAGGAACCGAAA+TGG | - | tig0001283:11289-11308 | Msa1336530:CDS | 40.0% | |
| TGTTCTTCAGGAACCGAAAT+GGG | - | tig0001283:11290-11309 | Msa1336530:CDS | 40.0% | |
| !!! | ATCGGTTTTGGAGCAGTATT+TGG | - | tig0001283:11677-11696 | Msa1336530:CDS | 40.0% |
| !!! | TTAGGGACAATGCTGTTTTG+AGG | - | tig0001283:12005-12024 | Msa1336530:intron | 40.0% |
| CATGAGAGTCAGATTAGACA+TGG | - | tig0001283:12181-12200 | Msa1336530:intron | 40.0% | |
| !!! | CTGGTTGGTTTTGACAACAT+TGG | + | tig0001283:12220-12239 | Msa1336530:intergenic | 40.0% |
| !!! | CCGACTAGATTTTTGAGTCA+TGG | + | tig0001283:12384-12403 | Msa1336530:intergenic | 40.0% |
| ATCATCGATGTTATCCGAAC+TGG | + | tig0001283:12420-12439 | Msa1336530:intergenic | 40.0% | |
| ! | AATAGAACAAAGGGCACAAG+TGG | - | tig0001283:12535-12554 | Msa1336530:intron | 40.0% |
| !!! | GTCACTTTTGGACTGTGTAA+TGG | + | tig0001283:12622-12641 | Msa1336530:intergenic | 40.0% |
| ! | GTGATCAAACTAGAGTTGGT+TGG | - | tig0001283:12661-12680 | Msa1336530:intron | 40.0% |
| !! | AAGTTAGTTTGTTAAGGGGG+AGG | - | tig0001283:12803-12822 | Msa1336530:intron | 40.0% |
| TCTCTATGACCAAGTAGTGT+AGG | - | tig0001283:13155-13174 | Msa1336530:CDS | 40.0% | |
| CTCTATGACCAAGTAGTGTA+GGG | - | tig0001283:13156-13175 | Msa1336530:CDS | 40.0% | |
| AAATCAGACCCTACACTACT+TGG | + | tig0001283:13167-13186 | Msa1336530:intergenic | 40.0% | |
| TTTGCCAATGTAGTTCTTCC+TGG | - | tig0001283:13617-13636 | Msa1336530:five_prime_UTR | 40.0% | |
| GAAACCAGGAAGAACTACAT+TGG | + | tig0001283:13624-13643 | Msa1336530:intergenic | 40.0% | |
| ! | TCTTTAGAGAAGGCTGCTAG+TGG | - | tig0001283:9138-9157 | Msa1336530:intron | 45.0% |
| ! | CTTTAGAGAAGGCTGCTAGT+GGG | - | tig0001283:9139-9158 | Msa1336530:intron | 45.0% |
| AGTTGTGGCAATGGATATGG+AGG | - | tig0001283:9240-9259 | Msa1336530:intron | 45.0% | |
| TGTACGAACAAGGAGGTTCA+TGG | + | tig0001283:9540-9559 | Msa1336530:intergenic | 45.0% | |
| ! | ATCGATGTTTGGGACAACGA+AGG | + | tig0001283:9655-9674 | Msa1336530:intergenic | 45.0% |
| CGAAGGACTAGATCGATGTT+TGG | + | tig0001283:9666-9685 | Msa1336530:intergenic | 45.0% | |
| AACATCGATCTAGTCCTTCG+GGG | - | tig0001283:9666-9685 | Msa1336530:intron | 45.0% | |
| GAAACGCGAGAATCACAAAC+TGG | + | tig0001283:10226-10245 | Msa1336530:intergenic | 45.0% | |
| GTGTGTGTTTATTCTCGCAG+TGG | + | tig0001283:10312-10331 | Msa1336530:intergenic | 45.0% | |
| CATGCGACGAGGAATAGATA+TGG | + | tig0001283:10470-10489 | Msa1336530:intergenic | 45.0% | |
| TGTGGTAAAAACATGCGACG+AGG | + | tig0001283:10481-10500 | Msa1336530:intergenic | 45.0% | |
| TCTCGACGAATTCAAGAGCA+GGG | - | tig0001283:10882-10901 | Msa1336530:CDS | 45.0% | |
| ATACATAGAGTAGAGCCAGG+TGG | - | tig0001283:10952-10971 | Msa1336530:CDS | 45.0% | |
| TCTTCGGAATCCGTGTTCTT+CGG | - | tig0001283:11080-11099 | Msa1336530:CDS | 45.0% | |
| AGAAAGATCCAATCGTCGGT+CGG | + | tig0001283:11228-11247 | Msa1336530:intergenic | 45.0% | |
| ACCGACGATTGGATCTTTCT+TGG | - | tig0001283:11228-11247 | Msa1336530:CDS | 45.0% | |
| TACTGCCTCAAATGTGAAGC+AGG | - | tig0001283:11257-11276 | Msa1336530:CDS | 45.0% | |
| TTGAGCCTGCTTCACATTTG+AGG | + | tig0001283:11265-11284 | Msa1336530:intergenic | 45.0% | |
| TGCTGTTGAGAAAATGCTCG+AGG | - | tig0001283:11398-11417 | Msa1336530:CDS | 45.0% | |
| CGAGGATCTGATATATGCTC+AGG | - | tig0001283:11416-11435 | Msa1336530:CDS | 45.0% | |
| GTTCTCGAACGAGTTACGAT+CGG | + | tig0001283:11475-11494 | Msa1336530:intergenic | 45.0% | |
| ATCTTGAGAACAGTATCCCC+CGG | + | tig0001283:11621-11640 | Msa1336530:intergenic | 45.0% | |
| !!! | GGTTTTGGAGCAGTATTTGG+AGG | - | tig0001283:11680-11699 | Msa1336530:CDS | 45.0% |
| AAAACCAACCAGACCGAACT+GGG | - | tig0001283:12228-12247 | Msa1336530:intron | 45.0% | |
| AACTGTGGTTGAACCCAGTT+CGG | + | tig0001283:12244-12263 | Msa1336530:intergenic | 45.0% | |
| GTTAGATCTCCAGTCCAGTT+CGG | - | tig0001283:12403-12422 | Msa1336530:intron | 45.0% | |
| GAGGTCACAAGCTCAAATCA+AGG | + | tig0001283:12572-12591 | Msa1336530:intergenic | 45.0% | |
| CAAGTTGTTGCCTTGTGACT+TGG | + | tig0001283:12599-12618 | Msa1336530:intergenic | 45.0% | |
| GGCAGTGATCAAACTAGAGT+TGG | - | tig0001283:12657-12676 | Msa1336530:intron | 45.0% | |
| !! | AGAGCCCTTTGGCCTTTTAA+GGG | + | tig0001283:13265-13284 | Msa1336530:intergenic | 45.0% |
| !! | AAGAGCCCTTTGGCCTTTTA+AGG | + | tig0001283:13266-13285 | Msa1336530:intergenic | 45.0% |
| ACCTTCATGTAAGAGCCCTT+TGG | + | tig0001283:13276-13295 | Msa1336530:intergenic | 45.0% | |
| !! | ATATATTTAACAAAAAAATA+AGG | + | tig0001283:9286-9305 | Msa1336530:intergenic | 5.0% |
| !!! | GTTTTAAATTTTTTTTTATA+AGG | + | tig0001283:10123-10142 | Msa1336530:intergenic | 5.0% |
| !!! | ATAAAAAAAAATTTAAAACA+AGG | - | tig0001283:10124-10143 | Msa1336530:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTGAA+TGG | - | tig0001283:13365-13384 | Msa1336530:intron | 5.0% |
| !!! | AATTTTTTTTTTTATAATTC+AGG | - | tig0001283:13422-13441 | Msa1336530:five_prime_UTR | 5.0% |
| AGGTATCCTTAGCGCACAAC+TGG | - | tig0001283:8828-8847 | Msa1336530:CDS | 50.0% | |
| GGTATCCTTAGCGCACAACT+GGG | - | tig0001283:8829-8848 | Msa1336530:CDS | 50.0% | |
| GTATCCTTAGCGCACAACTG+GGG | - | tig0001283:8830-8849 | Msa1336530:CDS | 50.0% | |
| GGTTGACCTCTTCCCTCAAA+TGG | - | tig0001283:8890-8909 | Msa1336530:intron | 50.0% | |
| ACAGGGAAATGTCGGTACCA+GGG | - | tig0001283:9600-9619 | Msa1336530:intron | 50.0% | |
| CGAGAATCACAAACTGGACG+CGG | + | tig0001283:10220-10239 | Msa1336530:intergenic | 50.0% | |
| ! | CAAGCTTTAGCCTCATCGCA+CGG | - | tig0001283:10284-10303 | Msa1336530:CDS | 50.0% |
| TTCCAGTTTGATACCGCAGC+CGG | + | tig0001283:10565-10584 | Msa1336530:intergenic | 50.0% | |
| TTGAATTCGTCGAGACCGAG+CGG | + | tig0001283:10877-10896 | Msa1336530:intergenic | 50.0% | |
| GTCTCGACGAATTCAAGAGC+AGG | - | tig0001283:10881-10900 | Msa1336530:CDS | 50.0% | |
| TGGTTTATCCGACCGACGAT+TGG | - | tig0001283:11217-11236 | Msa1336530:CDS | 50.0% | |
| TCGAACGAGTTACGATCGGA+CGG | + | tig0001283:11471-11490 | Msa1336530:intergenic | 50.0% | |
| TGTTGCCGTGCTTCATCGAT+CGG | + | tig0001283:11585-11604 | Msa1336530:intergenic | 50.0% | |
| GATGAAGCACGGCAACAAGT+TGG | - | tig0001283:11588-11607 | Msa1336530:CDS | 50.0% | |
| CAAAACCAACCAGACCGAAC+TGG | - | tig0001283:12227-12246 | Msa1336530:intron | 50.0% | |
| CGATGTTATCCGAACTGGAC+TGG | + | tig0001283:12415-12434 | Msa1336530:intergenic | 50.0% | |
| ! | GTTGTTGCCTTGTGACTTGG+AGG | + | tig0001283:12596-12615 | Msa1336530:intergenic | 50.0% |
| GCCAAAGGGCTCTTACATGA+AGG | - | tig0001283:13272-13291 | Msa1336530:intron | 50.0% | |
| CTGGGGAGACTAATCCTTCG+AGG | - | tig0001283:8847-8866 | Msa1336530:intron | 55.0% | |
| GAGGTTCATGGTTCGATCCC+TGG | + | tig0001283:9528-9547 | Msa1336530:intergenic | 55.0% | |
| GACAGGGAAATGTCGGTACC+AGG | - | tig0001283:9599-9618 | Msa1336530:intron | 55.0% | |
| CAGGGAAATGTCGGTACCAG+GGG | - | tig0001283:9601-9620 | Msa1336530:intron | 55.0% | |
| GAGATTCAGGGTTGAACCCC+TGG | + | tig0001283:9620-9639 | Msa1336530:intergenic | 55.0% | |
| ! | TTCTGGAGAAGTTCCGGCTG+CGG | - | tig0001283:10549-10568 | Msa1336530:CDS | 55.0% |
| TTCCGGCTGCGGTATCAAAC+TGG | - | tig0001283:10560-10579 | Msa1336530:CDS | 55.0% | |
| CGTGCTTCATCGATCGGATC+CGG | + | tig0001283:11579-11598 | Msa1336530:intergenic | 55.0% | |
| CGGATCCGATCGATGAAGCA+CGG | - | tig0001283:11577-11596 | Msa1336530:CDS | 55.0% | |
| ! | AAGCACGGCAACAAGTTGGC+AGG | - | tig0001283:11592-11611 | Msa1336530:CDS | 55.0% |
| ! | GCAACAAGTTGGCAGGATGC+CGG | - | tig0001283:11599-11618 | Msa1336530:CDS | 55.0% |
| ! | CAACAAGTTGGCAGGATGCC+GGG | - | tig0001283:11600-11619 | Msa1336530:CDS | 55.0% |
| ! | AACAAGTTGGCAGGATGCCG+GGG | - | tig0001283:11601-11620 | Msa1336530:CDS | 55.0% |
| TGAACCCAGTTCGGTCTGGT+TGG | + | tig0001283:12235-12254 | Msa1336530:intergenic | 55.0% | |
| TGGTTGAACCCAGTTCGGTC+TGG | + | tig0001283:12239-12258 | Msa1336530:intergenic | 55.0% | |
| GACCTCACCTCCAAGTCACA+AGG | - | tig0001283:12586-12605 | Msa1336530:intron | 55.0% | |
| ! | TGCCTTGTGACTTGGAGGTG+AGG | + | tig0001283:12591-12610 | Msa1336530:intergenic | 55.0% |
| GTCTCCCCAGTTGTGCGCTA+AGG | + | tig0001283:8837-8856 | Msa1336530:intergenic | 60.0% | |
| CGATCTAGTCCTTCGGGGAC+AGG | - | tig0001283:9671-9690 | Msa1336530:intron | 60.0% | |
| CATGGATAGCCTGTCCCCGA+AGG | + | tig0001283:9683-9702 | Msa1336530:intergenic | 60.0% | |
| ! | ACAAGTTGGCAGGATGCCGG+GGG | - | tig0001283:11602-11621 | Msa1336530:CDS | 60.0% |
| ! | TTGTCTGCAGCCGTGCCGCT+CGG | - | tig0001283:10859-10878 | Msa1336530:CDS | 65.0% |
| TTCGTCGAGACCGAGCGGCA+CGG | + | tig0001283:10872-10891 | Msa1336530:intergenic | 65.0% | |
| CGCAGTGGCACCGTGCGATG+AGG | + | tig0001283:10297-10316 | Msa1336530:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001283 | gene | 8558 | 13746 | 8558 | ID=Msa1336530;Name=Msa1336530 |
| tig0001283 | mRNA | 8558 | 13746 | 8558 | ID=Msa1336530-mRNA-1;Parent=Msa1336530;Name=Msa1336530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=363|1|1|1|0.75|0.6|5|56|590 |
| tig0001283 | exon | 8558 | 8860 | 8558 | ID=Msa1336530-mRNA-1:exon:763;Parent=Msa1336530-mRNA-1 |
| tig0001283 | exon | 10278 | 10363 | 10278 | ID=Msa1336530-mRNA-1:exon:762;Parent=Msa1336530-mRNA-1 |
| tig0001283 | exon | 10480 | 11759 | 10480 | ID=Msa1336530-mRNA-1:exon:761;Parent=Msa1336530-mRNA-1 |
| tig0001283 | exon | 13043 | 13232 | 13043 | ID=Msa1336530-mRNA-1:exon:760;Parent=Msa1336530-mRNA-1 |
| tig0001283 | exon | 13414 | 13746 | 13414 | ID=Msa1336530-mRNA-1:exon:759;Parent=Msa1336530-mRNA-1 |
| tig0001283 | five_prime_UTR | 13414 | 13746 | 13414 | ID=Msa1336530-mRNA-1:five_prime_utr;Parent=Msa1336530-mRNA-1 |
| tig0001283 | five_prime_UTR | 13203 | 13232 | 13203 | ID=Msa1336530-mRNA-1:five_prime_utr;Parent=Msa1336530-mRNA-1 |
| tig0001283 | CDS | 13043 | 13202 | 13043 | ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1 |
| tig0001283 | CDS | 10480 | 11759 | 10480 | ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1 |
| tig0001283 | CDS | 10278 | 10363 | 10278 | ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1 |
| tig0001283 | CDS | 8614 | 8860 | 8614 | ID=Msa1336530-mRNA-1:cds;Parent=Msa1336530-mRNA-1 |
| tig0001283 | three_prime_UTR | 8558 | 8613 | 8558 | ID=Msa1336530-mRNA-1:three_prime_utr;Parent=Msa1336530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
