Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488260 | XP_024633981.1 | 86.780 | 590 | 44 | 1 | 1 | 556 | 1 | 590 | 0.0 | 1038 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488260 | sp|F4I8I0|SUN4_ARATH | 39.672 | 610 | 269 | 13 | 15 | 555 | 16 | 595 | 2.05e-128 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488260 | A0A396IKV0 | 86.780 | 590 | 44 | 1 | 1 | 556 | 1 | 590 | 0.0 | 1038 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001960 | Msa0488260 | 0.804086 | 2.557784e-49 | -8.615850e-47 |
| Msa0106620 | Msa0488260 | 0.802768 | 4.796962e-49 | -8.615850e-47 |
| Msa0106710 | Msa0488260 | 0.803249 | 3.815178e-49 | -8.615850e-47 |
| Msa0108410 | Msa0488260 | 0.822320 | 2.522649e-53 | -8.615850e-47 |
| Msa0140500 | Msa0488260 | -0.812632 | 3.844302e-51 | -8.615850e-47 |
| Msa0187030 | Msa0488260 | 0.804861 | 1.763000e-49 | -8.615850e-47 |
| Msa0188150 | Msa0488260 | 0.803080 | 4.134227e-49 | -8.615850e-47 |
| Msa0221000 | Msa0488260 | 0.802338 | 5.881719e-49 | -8.615850e-47 |
| Msa0225100 | Msa0488260 | 0.807250 | 5.540877e-50 | -8.615850e-47 |
| Msa0225220 | Msa0488260 | 0.805749 | 1.148902e-49 | -8.615850e-47 |
| Msa0237210 | Msa0488260 | 0.812240 | 4.682450e-51 | -8.615850e-47 |
| Msa0365100 | Msa0488260 | 0.802118 | 6.529051e-49 | -8.615850e-47 |
| Msa0367870 | Msa0488260 | 0.801845 | 7.430342e-49 | -8.615850e-47 |
| Msa0378720 | Msa0488260 | 0.806137 | 9.517185e-50 | -8.615850e-47 |
| Msa0381610 | Msa0488260 | -0.819084 | 1.398053e-52 | -8.615850e-47 |
| Msa0405130 | Msa0488260 | 0.808663 | 2.772253e-50 | -8.615850e-47 |
| Msa0406770 | Msa0488260 | 0.805807 | 1.116862e-49 | -8.615850e-47 |
| Msa0427100 | Msa0488260 | 0.802127 | 6.500004e-49 | -8.615850e-47 |
| Msa0427120 | Msa0488260 | 0.806587 | 7.652927e-50 | -8.615850e-47 |
| Msa0460590 | Msa0488260 | 0.813901 | 2.024038e-51 | -8.615850e-47 |
| Msa0464680 | Msa0488260 | 0.809218 | 2.108958e-50 | -8.615850e-47 |
| Msa0468410 | Msa0488260 | 0.803885 | 2.816218e-49 | -8.615850e-47 |
| Msa0240900 | Msa0488260 | 0.812226 | 4.716971e-51 | -8.615850e-47 |
| Msa0274980 | Msa0488260 | 0.812900 | 3.360006e-51 | -8.615850e-47 |
| Msa0300320 | Msa0488260 | 0.817424 | 3.322388e-52 | -8.615850e-47 |
| Msa0315690 | Msa0488260 | 0.824327 | 8.571542e-54 | -8.615850e-47 |
| Msa0317970 | Msa0488260 | 0.821524 | 3.856474e-53 | -8.615850e-47 |
| Msa0336310 | Msa0488260 | 0.812058 | 5.130685e-51 | -8.615850e-47 |
| Msa0336320 | Msa0488260 | 0.818195 | 2.225177e-52 | -8.615850e-47 |
| Msa0337700 | Msa0488260 | 0.802585 | 5.231659e-49 | -8.615850e-47 |
| Msa0341690 | Msa0488260 | 0.802131 | 6.488426e-49 | -8.615850e-47 |
| Msa0342010 | Msa0488260 | 0.812656 | 3.798259e-51 | -8.615850e-47 |
| Msa0358890 | Msa0488260 | 0.811777 | 5.909418e-51 | -8.615850e-47 |
| Msa0360210 | Msa0488260 | 0.800188 | 1.620188e-48 | -8.615850e-47 |
| Msa0488260 | Msa0532960 | 0.810148 | 1.331168e-50 | -8.615850e-47 |
| Msa0488260 | Msa0545850 | 0.823969 | 1.040087e-53 | -8.615850e-47 |
| Msa0488260 | Msa0574390 | 0.804361 | 2.241349e-49 | -8.615850e-47 |
| Msa0488260 | Msa0579660 | 0.804931 | 1.704038e-49 | -8.615850e-47 |
| Msa0488260 | Msa0583360 | -0.805982 | 1.025947e-49 | -8.615850e-47 |
| Msa0488260 | Msa0601950 | 0.805354 | 1.390418e-49 | -8.615850e-47 |
| Msa0488260 | Msa0611210 | 0.802851 | 4.610043e-49 | -8.615850e-47 |
| Msa0488260 | Msa0651550 | 0.800069 | 1.712837e-48 | -8.615850e-47 |
| Msa0488260 | Msa0721280 | 0.800079 | 1.705546e-48 | -8.615850e-47 |
| Msa0488260 | Msa0736600 | 0.813569 | 2.395905e-51 | -8.615850e-47 |
| Msa0488260 | Msa0760560 | 0.804193 | 2.429259e-49 | -8.615850e-47 |
| Msa0488260 | Msa0789100 | 0.805451 | 1.326678e-49 | -8.615850e-47 |
| Msa0488260 | Msa0795070 | 0.811743 | 6.008671e-51 | -8.615850e-47 |
| Msa0488260 | Msa0832120 | 0.806585 | 7.659605e-50 | -8.615850e-47 |
| Msa0488260 | Msa0833520 | 0.805154 | 1.531010e-49 | -8.615850e-47 |
| Msa0488260 | Msa0833530 | 0.800768 | 1.234539e-48 | -8.615850e-47 |
| Msa0488260 | Msa0866520 | 0.804570 | 2.027966e-49 | -8.615850e-47 |
| Msa0488260 | Msa0934140 | 0.811657 | 6.274672e-51 | -8.615850e-47 |
| Msa0488260 | Msa1034500 | 0.830134 | 3.483510e-55 | -8.615850e-47 |
| Msa0488260 | Msa1036610 | 0.810580 | 1.073977e-50 | -8.615850e-47 |
| Msa0488260 | Msa1051770 | 0.802724 | 4.898545e-49 | -8.615850e-47 |
| Msa0488260 | Msa1089450 | 0.812175 | 4.838171e-51 | -8.615850e-47 |
| Msa0488260 | Msa1111380 | 0.806320 | 8.710902e-50 | -8.615850e-47 |
| Msa0488260 | Msa1145810 | 0.824946 | 6.126010e-54 | -8.615850e-47 |
| Msa0488260 | Msa1186020 | 0.800438 | 1.440877e-48 | -8.615850e-47 |
| Msa0488260 | Msa1193170 | 0.806027 | 1.004199e-49 | -8.615850e-47 |
| Msa0488260 | Msa1204100 | -0.809640 | 1.712606e-50 | -8.615850e-47 |
| Msa0488260 | Msa1225860 | -0.808692 | 2.733342e-50 | -8.615850e-47 |
| Msa0488260 | Msa1238820 | 0.808074 | 3.703208e-50 | -8.615850e-47 |
| Msa0488260 | Msa1243870 | 0.826626 | 2.447325e-54 | -8.615850e-47 |
| Msa0488260 | Msa1275450 | 0.808518 | 2.977149e-50 | -8.615850e-47 |
| Msa0488260 | Msa1284900 | 0.824030 | 1.006731e-53 | -8.615850e-47 |
| Msa0488260 | Msa1297230 | 0.804706 | 1.899670e-49 | -8.615850e-47 |
| Msa0488260 | Msa1329050 | -0.807681 | 4.489026e-50 | -8.615850e-47 |
| Msa0488260 | Msa1330420 | 0.804595 | 2.003298e-49 | -8.615850e-47 |
| Msa0488260 | Msa1336530 | 0.801005 | 1.104232e-48 | -8.615850e-47 |
| Msa0488260 | Msa1345810 | 0.802619 | 5.148835e-49 | -8.615850e-47 |
| Msa0488260 | Msa1360980 | 0.803476 | 3.423265e-49 | -8.615850e-47 |
| Msa0488260 | Msa1385890 | 0.805631 | 1.216159e-49 | -8.615850e-47 |
| Msa0488260 | Msa1390690 | 0.814216 | 1.725233e-51 | -8.615850e-47 |
| Msa0488260 | Msa1390700 | 0.816271 | 6.026581e-52 | -8.615850e-47 |
| Msa0488260 | Msa1392900 | 0.812363 | 4.403110e-51 | -8.615850e-47 |
| Msa0488260 | Msa1392910 | 0.814366 | 1.598030e-51 | -8.615850e-47 |
| Msa0488260 | Msa1398090 | 0.805124 | 1.553451e-49 | -8.615850e-47 |
| Msa0488260 | Msa1413610 | 0.813955 | 1.969786e-51 | -8.615850e-47 |
| Msa0488260 | Msa1425880 | 0.813019 | 3.163193e-51 | -8.615850e-47 |
| Msa0488260 | Msa1440310 | 0.816492 | 5.379230e-52 | -8.615850e-47 |
| Msa0488260 | Msa1444510 | 0.805379 | 1.373751e-49 | -8.615850e-47 |
| Msa0488260 | Msa1445390 | -0.813507 | 2.471918e-51 | -8.615850e-47 |
| Msa0488260 | Msa1448560 | 0.804885 | 1.742825e-49 | -8.615850e-47 |
| Msa0488260 | Msa1449340 | -0.810481 | 1.128354e-50 | -8.615850e-47 |
| Msa0488260 | Msa1463900 | 0.803872 | 2.833069e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488260 | MtrunA17_Chr3g0078011 | 86.780 | 590 | 44 | 1 | 1 | 556 | 1 | 590 | 0.0 | 1038 |
| Msa0488260 | MtrunA17_Chr1g0183121 | 53.963 | 593 | 211 | 11 | 1 | 541 | 1 | 583 | 0.0 | 575 |
| Msa0488260 | MtrunA17_Chr4g0013761 | 54.104 | 597 | 203 | 13 | 1 | 536 | 1 | 587 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488260 | AT1G71360.1 | 39.672 | 610 | 269 | 13 | 15 | 555 | 16 | 595 | 2.08e-129 | 391 |
| Msa0488260 | AT1G71360.2 | 39.672 | 610 | 269 | 13 | 15 | 555 | 42 | 621 | 1.51e-128 | 389 |
| Msa0488260 | AT1G22882.1 | 41.739 | 460 | 201 | 6 | 150 | 555 | 213 | 659 | 4.22e-110 | 343 |
| Msa0488260 | AT4G23950.1 | 35.396 | 404 | 204 | 7 | 191 | 553 | 170 | 557 | 5.18e-72 | 240 |
| Msa0488260 | AT4G23950.2 | 35.309 | 405 | 204 | 8 | 191 | 553 | 170 | 558 | 1.35e-70 | 237 |
Find 105 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCTAAGCAAATCTTTA+AGG | 0.113024 | 3_4:+7612128 | None:intergenic |
| AAGATATTTGTCTTTGTTTC+TGG | 0.123881 | 3_4:+7609743 | None:intergenic |
| TATTTATATGTAGATGTTTC+TGG | 0.164077 | 3_4:-7610272 | Msa0488260:intron |
| ACTAGTACTCCAATTGATTT+TGG | 0.171618 | 3_4:+7609890 | None:intergenic |
| TGACTTGAATTTATCGGTTT+TGG | 0.187353 | 3_4:-7609039 | Msa0488260:CDS |
| AGAATAACCTTTATAGAAAA+TGG | 0.220827 | 3_4:+7612188 | None:intergenic |
| TTATAAAGTTTCTTTGTCTT+TGG | 0.237986 | 3_4:-7611669 | Msa0488260:CDS |
| GACAAAACCAATGATCTTAT+TGG | 0.260394 | 3_4:-7610116 | Msa0488260:CDS |
| TTCTCTTTCATTGGTGGAAA+TGG | 0.268861 | 3_4:-7612099 | Msa0488260:five_prime_UTR |
| ACCGACGATTGGATCTTTCT+TGG | 0.277128 | 3_4:-7609476 | Msa0488260:CDS |
| CAAATATTCCTCATCAGATT+TGG | 0.295282 | 3_4:+7610190 | None:intergenic |
| GGCTCAAAGATTTGTTCTTC+AGG | 0.304534 | 3_4:-7609426 | Msa0488260:CDS |
| ACTACCTTGGCAAAATTTCC+TGG | 0.314391 | 3_4:+7607105 | None:intergenic |
| AATATGATTATGAGCATATA+TGG | 0.317247 | 3_4:-7607157 | Msa0488260:CDS |
| TTATCTTGACTTGAATTTAT+CGG | 0.318188 | 3_4:-7609045 | Msa0488260:CDS |
| TTGAGCATGGTTGAAGTTTA+CGG | 0.319953 | 3_4:-7609335 | Msa0488260:CDS |
| ATTGGATTGAGTTTGTTTAT+TGG | 0.331662 | 3_4:-7612265 | Msa0488260:five_prime_UTR |
| TTGGATTGAGTTTGTTTATT+GGG | 0.339337 | 3_4:-7612264 | Msa0488260:five_prime_UTR |
| AGGTATCCTTAGCGCACAAC+TGG | 0.346004 | 3_4:-7612014 | Msa0488260:five_prime_UTR |
| CGAGTTACCAATAAGATCAT+TGG | 0.346327 | 3_4:+7610109 | None:intergenic |
| TTTAGATATCGAACCCATTT+CGG | 0.354077 | 3_4:+7609401 | None:intergenic |
| CTTATTGGTAACTCGCTTAT+CGG | 0.359280 | 3_4:-7610101 | Msa0488260:CDS |
| AAATCTAAGCAAATCTTTAA+GGG | 0.359615 | 3_4:+7612129 | None:intergenic |
| TACTCTATGTATTACACTTC+CGG | 0.360472 | 3_4:+7609863 | None:intergenic |
| CTGATATATGCTGAAGAAAA+TGG | 0.362230 | 3_4:-7609281 | Msa0488260:CDS |
| ATGTTAGTGATCTTGATTCT+TGG | 0.364251 | 3_4:-7608756 | Msa0488260:CDS |
| TTTGCCAAGGTAGTTCTTCC+TGG | 0.376171 | 3_4:-7607096 | Msa0488260:CDS |
| GAGTTTGTTTATTGGGAAGT+TGG | 0.378407 | 3_4:-7612257 | Msa0488260:five_prime_UTR |
| TCATGTTCCTTTCTATTATG+TGG | 0.379171 | 3_4:+7610029 | None:intergenic |
| CAACAAGTTGGCAGGATGCC+GGG | 0.384773 | 3_4:-7609104 | Msa0488260:CDS |
| ATAAGTTGTGGCAATGGATA+TGG | 0.386092 | 3_4:-7611605 | Msa0488260:CDS |
| AGATGTTTCTGGAGAAGTTC+CGG | 0.391702 | 3_4:-7610261 | Msa0488260:CDS |
| ATGAGGAATATTTGACTAAA+GGG | 0.392267 | 3_4:-7610181 | Msa0488260:CDS |
| AAAGAGTATAGCAAAGATAT+AGG | 0.394814 | 3_4:-7608972 | Msa0488260:CDS |
| GGTATCTGAGATTCATTTAA+CGG | 0.401646 | 3_4:-7611974 | Msa0488260:five_prime_UTR |
| AGTTTGTTTATTGGGAAGTT+GGG | 0.404582 | 3_4:-7612256 | Msa0488260:five_prime_UTR |
| TTGTCTGCAGCCGTGCCGCT+CGG | 0.408230 | 3_4:-7609945 | Msa0488260:CDS |
| AATGGTAAATAGAAATGTTC+CGG | 0.409342 | 3_4:-7609147 | Msa0488260:CDS |
| GTGAATCTTCAAAGTCACTA+TGG | 0.412172 | 3_4:-7609377 | Msa0488260:CDS |
| TTGAGCCTGCTTCACATTTG+AGG | 0.413911 | 3_4:+7609442 | None:intergenic |
| AGAACAGTGATGATGATGTT+TGG | 0.430324 | 3_4:-7609214 | Msa0488260:CDS |
| ACTTGAAAATCAAGTATCAT+TGG | 0.430507 | 3_4:-7607251 | Msa0488260:CDS |
| GCAACAAGTTGGCAGGATGC+CGG | 0.433804 | 3_4:-7609105 | Msa0488260:CDS |
| TGTTCTTCAGGAACCGAAAT+GGG | 0.436891 | 3_4:-7609414 | Msa0488260:CDS |
| TTCTTCTGAGAACGTTGAAA+TGG | 0.441280 | 3_4:-7609165 | Msa0488260:CDS |
| TTGTTCTTCAGGAACCGAAA+TGG | 0.444428 | 3_4:-7609415 | Msa0488260:CDS |
| TTCCAGTTTGATACCACAAC+CGG | 0.447076 | 3_4:+7610242 | None:intergenic |
| TTCCGGTTGTGGTATCAAAC+TGG | 0.451433 | 3_4:-7610244 | Msa0488260:CDS |
| CAGTTAGTTCCAAAATCAAT+TGG | 0.451584 | 3_4:-7609899 | Msa0488260:CDS |
| TGCAATTGGATCATATACTT+AGG | 0.461963 | 3_4:-7608717 | Msa0488260:CDS |
| TACTGCCTCAAATGTGAAGC+AGG | 0.465363 | 3_4:-7609447 | Msa0488260:CDS |
| GATGAGGAATATTTGACTAA+AGG | 0.473117 | 3_4:-7610182 | Msa0488260:CDS |
| AACTTATCCATAAGCTGAAA+AGG | 0.474461 | 3_4:+7611621 | None:intergenic |
| TTCTGGAGAAGTTCCGGTTG+TGG | 0.476275 | 3_4:-7610255 | Msa0488260:CDS |
| GTATCTGAGATTCATTTAAC+GGG | 0.477271 | 3_4:-7611973 | Msa0488260:intron |
| TGGTTTATCCGACCGACGAT+TGG | 0.481196 | 3_4:-7609487 | Msa0488260:CDS |
| CGTGCTTCATCGATCGGATC+CGG | 0.483570 | 3_4:+7609128 | None:intergenic |
| GCAATTGGATCATATACTTA+GGG | 0.488218 | 3_4:-7608716 | Msa0488260:CDS |
| CAACTTCGTTGTATAAACTA+AGG | 0.491880 | 3_4:-7612034 | Msa0488260:five_prime_UTR |
| TTGATGAGATTGGATTGGAT+TGG | 0.495097 | 3_4:-7612283 | Msa0488260:five_prime_UTR |
| TGTTGCCGTGCTTCATCGAT+CGG | 0.498822 | 3_4:+7609122 | None:intergenic |
| GTCTCGACGAATTCAAGAGC+AGG | 0.503431 | 3_4:-7609923 | Msa0488260:CDS |
| AATTGGAGTACTAGTCCATC+CGG | 0.508594 | 3_4:-7609882 | Msa0488260:CDS |
| GAAACAAAGACAAATATCTT+CGG | 0.521533 | 3_4:-7609740 | Msa0488260:CDS |
| AACAAGTTGGCAGGATGCCG+GGG | 0.522411 | 3_4:-7609103 | Msa0488260:CDS |
| GTCTCCCCAGTTGTGCGCTA+AGG | 0.527976 | 3_4:+7612008 | None:intergenic |
| GCTTCTAACAAAGAAGCTAA+AGG | 0.533192 | 3_4:-7609783 | Msa0488260:CDS |
| TCAAGTATCATTGGAAAACA+AGG | 0.535419 | 3_4:-7607242 | Msa0488260:CDS |
| ATAATAGAGCAATTAAATCC+AGG | 0.537461 | 3_4:-7607123 | Msa0488260:CDS |
| TTCAGCTTATGGATAAGTTG+TGG | 0.543462 | 3_4:-7611617 | Msa0488260:CDS |
| GTACATTCCACATAATAGAA+AGG | 0.548755 | 3_4:-7610036 | Msa0488260:CDS |
| AATTACGCTTCATCATCAAA+AGG | 0.550801 | 3_4:-7609819 | Msa0488260:CDS |
| AAGCACGGCAACAAGTTGGC+AGG | 0.551588 | 3_4:-7609112 | Msa0488260:CDS |
| CTGGGGAGACTAATCCTTCG+AGG | 0.555464 | 3_4:-7611995 | Msa0488260:five_prime_UTR |
| AGTTGCTTATGAATCTAAAG+AGG | 0.558049 | 3_4:+7612052 | None:intergenic |
| GTAATACATAGAGTAGAGCC+AGG | 0.571111 | 3_4:-7609855 | Msa0488260:CDS |
| TCTTTAGAGAAGGCTGCTAG+TGG | 0.572809 | 3_4:-7611704 | Msa0488260:CDS |
| ACAAAGAAGATCTTTAGAGA+AGG | 0.579527 | 3_4:-7611714 | Msa0488260:CDS |
| ATCGGTGAAGAAAATGTAGA+CGG | 0.592560 | 3_4:-7610083 | Msa0488260:CDS |
| CTATGTATTACACTTCCGGA+TGG | 0.592663 | 3_4:+7609867 | None:intergenic |
| AGTTGTGGCAATGGATATGG+AGG | 0.595571 | 3_4:-7611602 | Msa0488260:intron |
| GATGAAGCACGGCAACAAGT+TGG | 0.597273 | 3_4:-7609116 | Msa0488260:CDS |
| CTTTAGAGAAGGCTGCTAGT+GGG | 0.597719 | 3_4:-7611703 | Msa0488260:CDS |
| AGAAAGATCCAATCGTCGGT+CGG | 0.598915 | 3_4:+7609479 | None:intergenic |
| ATCTTGAGAATAGTATCCCC+CGG | 0.601238 | 3_4:+7609086 | None:intergenic |
| GGTATCCTTAGCGCACAACT+GGG | 0.602307 | 3_4:-7612013 | Msa0488260:five_prime_UTR |
| ACTGGAACAAAGATGAGCAA+AGG | 0.611162 | 3_4:-7610226 | Msa0488260:CDS |
| ACAAGTTGGCAGGATGCCGG+GGG | 0.614040 | 3_4:-7609102 | Msa0488260:CDS |
| TTATGGATAAGTTGTGGCAA+TGG | 0.614532 | 3_4:-7611611 | Msa0488260:CDS |
| GAAACCAGGAAGAACTACCT+TGG | 0.617640 | 3_4:+7607092 | None:intergenic |
| TCAGAGTAGAAAGTCTCAGA+AGG | 0.620858 | 3_4:+7610143 | None:intergenic |
| TTCGTCGAGACCGAGCGGCA+CGG | 0.626595 | 3_4:+7609935 | None:intergenic |
| TCCAAGAAAGATCCAATCGT+CGG | 0.633621 | 3_4:+7609475 | None:intergenic |
| CGGATCCGATCGATGAAGCA+CGG | 0.639939 | 3_4:-7609127 | Msa0488260:CDS |
| CAAGTATCATTGGAAAACAA+GGG | 0.641799 | 3_4:-7607241 | Msa0488260:CDS |
| TCTCGACGAATTCAAGAGCA+GGG | 0.643708 | 3_4:-7609922 | Msa0488260:CDS |
| ATGAATCTCAGATACCTCGA+AGG | 0.662179 | 3_4:+7611981 | None:intergenic |
| TAATTGTATTCATCACCACC+TGG | 0.670479 | 3_4:+7609837 | None:intergenic |
| GTTCTCGAACGAGTTACGAT+CGG | 0.679894 | 3_4:+7609232 | None:intergenic |
| GTATCCTTAGCGCACAACTG+GGG | 0.702379 | 3_4:-7612012 | Msa0488260:five_prime_UTR |
| TCGAACGAGTTACGATCGGA+CGG | 0.703621 | 3_4:+7609236 | None:intergenic |
| TTGAATTCGTCGAGACCGAG+CGG | 0.704535 | 3_4:+7609930 | None:intergenic |
| ACTCAATAATAAGAGAAACC+AGG | 0.707896 | 3_4:+7607078 | None:intergenic |
| TGCTGTTGAGAAAATGCTCG+AGG | 0.711275 | 3_4:-7609306 | Msa0488260:CDS |
| ATACATAGAGTAGAGCCAGG+TGG | 0.769561 | 3_4:-7609852 | Msa0488260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTTTAACAAAAAAATA+AGG | + | chr3_4:7607717-7607736 | None:intergenic | 10.0% |
| !!! | ATTACTGTTTTTTTTTTTTT+TGG | - | chr3_4:7608246-7608265 | Msa0488260:intron | 10.0% |
| !!! | TTACTGTTTTTTTTTTTTTT+GGG | - | chr3_4:7608247-7608266 | Msa0488260:intron | 10.0% |
| !!! | TTTTAAATTTAGAAAAACTT+TGG | + | chr3_4:7611796-7611815 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTTTTTTTTGAA+TGG | - | chr3_4:7611925-7611944 | Msa0488260:intron | 10.0% |
| !!! | AATTAATTTTTTTATAATGC+AGG | - | chr3_4:7611982-7612001 | Msa0488260:five_prime_UTR | 10.0% |
| !!! | ATTAATTTTTTTATAATGCA+GGG | - | chr3_4:7611983-7612002 | Msa0488260:five_prime_UTR | 10.0% |
| !! | ATTCCAAAAAAATATAACAT+TGG | + | chr3_4:7607818-7607837 | None:intergenic | 15.0% |
| !! | ATGTTGTTGAATATTTATTA+CGG | - | chr3_4:7608197-7608216 | Msa0488260:intron | 15.0% |
| !!! | TACTGTTTTTTTTTTTTTTG+GGG | - | chr3_4:7608248-7608267 | Msa0488260:intron | 15.0% |
| !! | ATATAATGATGAGATATAAT+CGG | + | chr3_4:7608889-7608908 | None:intergenic | 15.0% |
| !! | TAATATTGTTTATGCTATAA+AGG | + | chr3_4:7610689-7610708 | None:intergenic | 15.0% |
| !! | TTTATAGCATAAACAATATT+AGG | - | chr3_4:7610688-7610707 | Msa0488260:intron | 15.0% |
| !! | TTATAGCATAAACAATATTA+GGG | - | chr3_4:7610689-7610708 | Msa0488260:intron | 15.0% |
| !! | AAACTATTATTAAAATGAGA+CGG | + | chr3_4:7611449-7611468 | None:intergenic | 15.0% |
| !!! | AAGTTACTTTAATTTTATCA+TGG | + | chr3_4:7611518-7611537 | None:intergenic | 15.0% |
| !! | ATTCAATAAATGTATATTAG+TGG | - | chr3_4:7611607-7611626 | Msa0488260:CDS | 15.0% |
| !!! | AAATATTAAATTTTAGCACA+AGG | - | chr3_4:7611815-7611834 | Msa0488260:intron | 15.0% |
| !!! | CATTTTTTAAGATACATAAA+TGG | + | chr3_4:7611894-7611913 | None:intergenic | 15.0% |
| !!! | TTTTTTGTCATTATCTTTCT+TGG | - | chr3_4:7607050-7607069 | Msa0488260:CDS | 20.0% |
| !! | AGAATAACCTTTATAGAAAA+TGG | + | chr3_4:7607088-7607107 | None:intergenic | 20.0% |
| !! | AAATCTAAGCAAATCTTTAA+GGG | + | chr3_4:7607147-7607166 | None:intergenic | 20.0% |
| !!! | TTCAAAATTTTCTCTTTCAT+TGG | - | chr3_4:7607165-7607184 | Msa0488260:CDS | 20.0% |
| !! | CAAATATAAAAACCATTTGA+GGG | + | chr3_4:7607336-7607355 | None:intergenic | 20.0% |
| !! | ACAAATATAAAAACCATTTG+AGG | + | chr3_4:7607337-7607356 | None:intergenic | 20.0% |
| !! | TTATAAAGTTTCTTTGTCTT+TGG | - | chr3_4:7607604-7607623 | Msa0488260:intron | 20.0% |
| !! | TAACAAAAAAATAAGGTCAT+CGG | + | chr3_4:7607710-7607729 | None:intergenic | 20.0% |
| !! | TTGTTAAAGATATTGAAGTA+TGG | - | chr3_4:7607724-7607743 | Msa0488260:intron | 20.0% |
| !!! | TGACCAATGTTATATTTTTT+TGG | - | chr3_4:7607812-7607831 | Msa0488260:intron | 20.0% |
| !!! | GTTATCCATGTTATTTTTAT+AGG | - | chr3_4:7607881-7607900 | Msa0488260:intron | 20.0% |
| !! | ATTTGCCTATAAAAATAACA+TGG | + | chr3_4:7607889-7607908 | None:intergenic | 20.0% |
| !! | TTAAAAAACATGTACGAATA+AGG | + | chr3_4:7607974-7607993 | None:intergenic | 20.0% |
| !!! | ATTCGTACATGTTTTTTAAT+AGG | - | chr3_4:7607975-7607994 | Msa0488260:intron | 20.0% |
| !! | TAAATACTAATAATACCTTG+TGG | - | chr3_4:7608169-7608188 | Msa0488260:intron | 20.0% |
| !! | ATCACAATAGAGAAATAATT+TGG | - | chr3_4:7608500-7608519 | Msa0488260:intron | 20.0% |
| !! | TTTCAACATATGAAAATTCT+TGG | - | chr3_4:7608569-7608588 | Msa0488260:intron | 20.0% |
| !! | TATTTATATGTAGATGTTTC+TGG | - | chr3_4:7609001-7609020 | Msa0488260:CDS | 20.0% |
| !!! | TTAAAAGATTTTGATTTGCA+TGG | - | chr3_4:7609758-7609777 | Msa0488260:CDS | 20.0% |
| !!! | TTATCTTGACTTGAATTTAT+CGG | - | chr3_4:7610228-7610247 | Msa0488260:CDS | 20.0% |
| !! | TATTACCAAAATAATGATCA+AGG | + | chr3_4:7610413-7610432 | None:intergenic | 20.0% |
| !!! | ACAAGCTTTTCTAATTAATT+TGG | - | chr3_4:7610606-7610625 | Msa0488260:intron | 20.0% |
| !!! | AATTTGGTTTTCTACAATAA+TGG | - | chr3_4:7610622-7610641 | Msa0488260:intron | 20.0% |
| !!! | ATTTGGTTTTCTACAATAAT+GGG | - | chr3_4:7610623-7610642 | Msa0488260:intron | 20.0% |
| !! | TATTTAATAAGCTGATTGTA+AGG | - | chr3_4:7610663-7610682 | Msa0488260:intron | 20.0% |
| !!! | TTGATGTTACTTATCTTTTA+AGG | + | chr3_4:7611034-7611053 | None:intergenic | 20.0% |
| !! | TAGTTCAAAAATAGAACAAA+GGG | - | chr3_4:7611091-7611110 | Msa0488260:intron | 20.0% |
| !! | TAGTTAGTAGAGTAATTAAA+CGG | - | chr3_4:7611558-7611577 | Msa0488260:intron | 20.0% |
| !! | TAAATTTAGAAAAACTTTGG+TGG | + | chr3_4:7611793-7611812 | None:intergenic | 20.0% |
| !! | AATATGATTATGAGCATATA+TGG | - | chr3_4:7612116-7612135 | Msa0488260:five_prime_UTR | 20.0% |
| !! | ATTGGATTGAGTTTGTTTAT+TGG | - | chr3_4:7607008-7607027 | Msa0488260:three_prime_UTR | 25.0% |
| !! | TTGGATTGAGTTTGTTTATT+GGG | - | chr3_4:7607009-7607028 | Msa0488260:three_prime_UTR | 25.0% |
| ! | GAAATCTAAGCAAATCTTTA+AGG | + | chr3_4:7607148-7607167 | None:intergenic | 25.0% |
| !! | AAAATTTTCTCTTTCATTGG+TGG | - | chr3_4:7607168-7607187 | Msa0488260:CDS | 25.0% |
| ! | TTTGTATTTGTGATCTTACA+TGG | - | chr3_4:7607352-7607371 | Msa0488260:intron | 25.0% |
| !!! | GATATGTGACTTTTTTTTGT+AGG | - | chr3_4:7607481-7607500 | Msa0488260:intron | 25.0% |
| !!! | TGTCTTTGGTTTTTATTTTG+TGG | - | chr3_4:7607618-7607637 | Msa0488260:intron | 25.0% |
| !!! | GTCTTTGGTTTTTATTTTGT+GGG | - | chr3_4:7607619-7607638 | Msa0488260:intron | 25.0% |
| !!! | TCTTTGGTTTTTATTTTGTG+GGG | - | chr3_4:7607620-7607639 | Msa0488260:intron | 25.0% |
| !!! | TGTTTTGGTATTTGACTATA+TGG | - | chr3_4:7607750-7607769 | Msa0488260:intron | 25.0% |
| !! | TTGAAAATTGATTTCTTGTC+TGG | - | chr3_4:7607853-7607872 | Msa0488260:intron | 25.0% |
| !!! | GTTAGTAGTTAATTTGTTAG+AGG | - | chr3_4:7607909-7607928 | Msa0488260:intron | 25.0% |
| !!! | TAGTTAATTTGTTAGAGACA+GGG | - | chr3_4:7608008-7608027 | Msa0488260:intron | 25.0% |
| ! | TGGTATTAATATGAAACACA+TGG | + | chr3_4:7608126-7608145 | None:intergenic | 25.0% |
| ! | TACGGAATATAGAATGAATT+TGG | - | chr3_4:7608215-7608234 | Msa0488260:intron | 25.0% |
| ! | GCTAAAATTGTTAGAAAACA+AGG | - | chr3_4:7608270-7608289 | Msa0488260:intron | 25.0% |
| !! | TATTGGATTTAGTTCATAGA+AGG | - | chr3_4:7608850-7608869 | Msa0488260:intron | 25.0% |
| ! | TTTAGGAACTGATATAACAA+AGG | + | chr3_4:7608913-7608932 | None:intergenic | 25.0% |
| !! | AATAACTGTGGAGATATTTT+AGG | + | chr3_4:7608930-7608949 | None:intergenic | 25.0% |
| ! | ATGAGGAATATTTGACTAAA+GGG | - | chr3_4:7609092-7609111 | Msa0488260:CDS | 25.0% |
| !! | AAGATATTTGTCTTTGTTTC+TGG | + | chr3_4:7609533-7609552 | None:intergenic | 25.0% |
| ! | GAAACAAAGACAAATATCTT+CGG | - | chr3_4:7609533-7609552 | Msa0488260:intron | 25.0% |
| ! | AATGGTAAATAGAAATGTTC+CGG | - | chr3_4:7610126-7610145 | Msa0488260:CDS | 25.0% |
| !! | AAAGAGTATAGCAAAGATAT+AGG | - | chr3_4:7610301-7610320 | Msa0488260:intron | 25.0% |
| !! | TTCTTCCTTGATCATTATTT+TGG | - | chr3_4:7610405-7610424 | Msa0488260:intron | 25.0% |
| ! | ATCAATTTGATCGTTCAATT+CGG | - | chr3_4:7611049-7611068 | Msa0488260:intron | 25.0% |
| ! | CTAGTTCAAAAATAGAACAA+AGG | - | chr3_4:7611090-7611109 | Msa0488260:intron | 25.0% |
| !!! | GTTTATTTTGATGTCACTTT+TGG | + | chr3_4:7611206-7611225 | None:intergenic | 25.0% |
| ! | AGTGACATCAAAATAAACAA+AGG | - | chr3_4:7611208-7611227 | Msa0488260:intron | 25.0% |
| ! | TGGAATTCAATAAATGTTAG+TGG | - | chr3_4:7611583-7611602 | Msa0488260:intron | 25.0% |
| ! | TAAACAGTTAAAATGAGAGA+AGG | - | chr3_4:7611701-7611720 | Msa0488260:CDS | 25.0% |
| ! | ACTTGAAAATCAAGTATCAT+TGG | - | chr3_4:7612022-7612041 | Msa0488260:five_prime_UTR | 25.0% |
| ! | ATAATAGAGCAATTAAATCC+AGG | - | chr3_4:7612150-7612169 | Msa0488260:five_prime_UTR | 25.0% |
| ! | AGTTTGTTTATTGGGAAGTT+GGG | - | chr3_4:7607017-7607036 | Msa0488260:three_prime_UTR | 30.0% |
| ! | CTTTGCTCCATTTTCTATAA+AGG | - | chr3_4:7607078-7607097 | Msa0488260:CDS | 30.0% |
| AGTTGCTTATGAATCTAAAG+AGG | + | chr3_4:7607224-7607243 | None:intergenic | 30.0% | |
| CAACTTCGTTGTATAAACTA+AGG | - | chr3_4:7607239-7607258 | Msa0488260:CDS | 30.0% | |
| ! | GGTATCTGAGATTCATTTAA+CGG | - | chr3_4:7607299-7607318 | Msa0488260:intron | 30.0% |
| ! | GTATCTGAGATTCATTTAAC+GGG | - | chr3_4:7607300-7607319 | Msa0488260:intron | 30.0% |
| AAGTGTCACAGATATAACAA+AGG | + | chr3_4:7607387-7607406 | None:intergenic | 30.0% | |
| ! | ACAAAGAAGATCTTTAGAGA+AGG | - | chr3_4:7607559-7607578 | Msa0488260:intron | 30.0% |
| AACTTATCCATAAGCTGAAA+AGG | + | chr3_4:7607655-7607674 | None:intergenic | 30.0% | |
| !!! | ATTGAAGTATGGTCTTGTTT+TGG | - | chr3_4:7607735-7607754 | Msa0488260:intron | 30.0% |
| AAAAATAACATGGATAACCG+AGG | + | chr3_4:7607879-7607898 | None:intergenic | 30.0% | |
| !! | AGTAGTTAATTTGTTAGAGG+AGG | - | chr3_4:7607912-7607931 | Msa0488260:intron | 30.0% |
| AAAAACATGTACGAATAAGG+AGG | + | chr3_4:7607971-7607990 | None:intergenic | 30.0% | |
| !! | GTAGTTAATTTGTTAGAGAC+AGG | - | chr3_4:7608007-7608026 | Msa0488260:intron | 30.0% |
| AGTATTGTGAAAGAGATTCA+GGG | + | chr3_4:7608057-7608076 | None:intergenic | 30.0% | |
| TCATAAAGCTTCAAGTGTAA+TGG | + | chr3_4:7608146-7608165 | None:intergenic | 30.0% | |
| TCAACAACATAAAATCCACA+AGG | + | chr3_4:7608187-7608206 | None:intergenic | 30.0% | |
| TTAACAACATAAACTAGCAG+AGG | - | chr3_4:7608420-7608439 | Msa0488260:intron | 30.0% | |
| TCAATTATGTAGCACTTGTT+TGG | - | chr3_4:7608612-7608631 | Msa0488260:intron | 30.0% | |
| !! | AAAGCTTGAATTTCTAGCTT+CGG | + | chr3_4:7608692-7608711 | None:intergenic | 30.0% |
| ATAAACACACACATAAGGAA+AGG | - | chr3_4:7608740-7608759 | Msa0488260:CDS | 30.0% | |
| GTTGTGTAGCTTATTCTTAT+TGG | - | chr3_4:7608833-7608852 | Msa0488260:intron | 30.0% | |
| ATGTCAGTGTAAAATAACTG+TGG | + | chr3_4:7608942-7608961 | None:intergenic | 30.0% | |
| CAAATATTCCTCATCAGATT+TGG | + | chr3_4:7609086-7609105 | None:intergenic | 30.0% | |
| GATGAGGAATATTTGACTAA+AGG | - | chr3_4:7609091-7609110 | Msa0488260:CDS | 30.0% | |
| GACAAAACCAATGATCTTAT+TGG | - | chr3_4:7609157-7609176 | Msa0488260:CDS | 30.0% | |
| GTACATTCCACATAATAGAA+AGG | - | chr3_4:7609237-7609256 | Msa0488260:CDS | 30.0% | |
| TCATGTTCCTTTCTATTATG+TGG | + | chr3_4:7609247-7609266 | None:intergenic | 30.0% | |
| CAGTTAGTTCCAAAATCAAT+TGG | - | chr3_4:7609374-7609393 | Msa0488260:CDS | 30.0% | |
| !! | ACTAGTACTCCAATTGATTT+TGG | + | chr3_4:7609386-7609405 | None:intergenic | 30.0% |
| TACTCTATGTATTACACTTC+CGG | + | chr3_4:7609413-7609432 | None:intergenic | 30.0% | |
| AATTACGCTTCATCATCAAA+AGG | - | chr3_4:7609454-7609473 | Msa0488260:CDS | 30.0% | |
| !!! | TTTTGATTTGCATGGTAGTT+TGG | - | chr3_4:7609766-7609785 | Msa0488260:CDS | 30.0% |
| TTTAGATATCGAACCCATTT+CGG | + | chr3_4:7609875-7609894 | None:intergenic | 30.0% | |
| CTGATATATGCTGAAGAAAA+TGG | - | chr3_4:7609992-7610011 | Msa0488260:CDS | 30.0% | |
| !!! | TGACTTGAATTTATCGGTTT+TGG | - | chr3_4:7610234-7610253 | Msa0488260:CDS | 30.0% |
| ATGTTAGTGATCTTGATTCT+TGG | - | chr3_4:7610517-7610536 | Msa0488260:intron | 30.0% | |
| !! | GTCTCATTTTTCTATGCAAT+TGG | - | chr3_4:7610542-7610561 | Msa0488260:intron | 30.0% |
| TGCAATTGGATCATATACTT+AGG | - | chr3_4:7610556-7610575 | Msa0488260:intron | 30.0% | |
| GCAATTGGATCATATACTTA+GGG | - | chr3_4:7610557-7610576 | Msa0488260:intron | 30.0% | |
| GATTAACAAAAGATCAAGAG+TGG | + | chr3_4:7610721-7610740 | None:intergenic | 30.0% | |
| TGGTTTAATCATGGTTGAAT+TGG | + | chr3_4:7610920-7610939 | None:intergenic | 30.0% | |
| ! | TGGTTCAATTGGTTTAATCA+TGG | + | chr3_4:7610929-7610948 | None:intergenic | 30.0% |
| !!! | TTTTTGAGTCATGGTTCAAT+TGG | + | chr3_4:7610940-7610959 | None:intergenic | 30.0% |
| ATAGAAAAAACATAGCCCAT+AGG | - | chr3_4:7611312-7611331 | Msa0488260:intron | 30.0% | |
| ATTTCGAGAACTTAACCTAT+GGG | + | chr3_4:7611330-7611349 | None:intergenic | 30.0% | |
| TATTTCGAGAACTTAACCTA+TGG | + | chr3_4:7611331-7611350 | None:intergenic | 30.0% | |
| !! | TGTGAGAAGTTAGTTTGTTA+AGG | - | chr3_4:7611369-7611388 | Msa0488260:intron | 30.0% |
| !! | GTGAGAAGTTAGTTTGTTAA+GGG | - | chr3_4:7611370-7611389 | Msa0488260:intron | 30.0% |
| !! | TGAGAAGTTAGTTTGTTAAG+GGG | - | chr3_4:7611371-7611390 | Msa0488260:intron | 30.0% |
| !!! | AATAGTTTTAGAGTTGTGTG+CGG | - | chr3_4:7611461-7611480 | Msa0488260:intron | 30.0% |
| !! | AAATTTTAGCACAAGGTAAG+TGG | - | chr3_4:7611822-7611841 | Msa0488260:intron | 30.0% |
| !! | AATTTTAGCACAAGGTAAGT+GGG | - | chr3_4:7611823-7611842 | Msa0488260:intron | 30.0% |
| !!! | TTTTTTATAATGCAGGGATG+AGG | - | chr3_4:7611989-7612008 | Msa0488260:five_prime_UTR | 30.0% |
| TCAAGTATCATTGGAAAACA+AGG | - | chr3_4:7612031-7612050 | Msa0488260:five_prime_UTR | 30.0% | |
| CAAGTATCATTGGAAAACAA+GGG | - | chr3_4:7612032-7612051 | Msa0488260:five_prime_UTR | 30.0% | |
| ACTCAATAATAAGAGAAACC+AGG | + | chr3_4:7612198-7612217 | None:intergenic | 30.0% | |
| ! | TTGATGAGATTGGATTGGAT+TGG | - | chr3_4:7606990-7607009 | Msa0488260:three_prime_UTR | 35.0% |
| ! | GAGTTTGTTTATTGGGAAGT+TGG | - | chr3_4:7607016-7607035 | Msa0488260:three_prime_UTR | 35.0% |
| TTCTCTTTCATTGGTGGAAA+TGG | - | chr3_4:7607174-7607193 | Msa0488260:CDS | 35.0% | |
| TAAAAACCATTTGAGGGAAG+AGG | + | chr3_4:7607330-7607349 | None:intergenic | 35.0% | |
| ! | TTGATGAAGCTTTTCACTGA+TGG | - | chr3_4:7607453-7607472 | Msa0488260:intron | 35.0% |
| !!! | GGTTTTTATTTTGTGGGGAT+TGG | - | chr3_4:7607625-7607644 | Msa0488260:intron | 35.0% |
| ! | TGGTTTTCCTTTTCAGCTTA+TGG | - | chr3_4:7607645-7607664 | Msa0488260:intron | 35.0% |
| TTCAGCTTATGGATAAGTTG+TGG | - | chr3_4:7607656-7607675 | Msa0488260:intron | 35.0% | |
| TTATGGATAAGTTGTGGCAA+TGG | - | chr3_4:7607662-7607681 | Msa0488260:intron | 35.0% | |
| ATAAGTTGTGGCAATGGATA+TGG | - | chr3_4:7607668-7607687 | Msa0488260:intron | 35.0% | |
| ! | GAGTATTGTGAAAGAGATTC+AGG | + | chr3_4:7608058-7608077 | None:intergenic | 35.0% |
| GAAAACAAGGCAGAACTAAA+AGG | - | chr3_4:7608283-7608302 | Msa0488260:intron | 35.0% | |
| !! | AAGCTTGAATTTCTAGCTTC+GGG | + | chr3_4:7608691-7608710 | None:intergenic | 35.0% |
| TATGTGTGTGTTTATTCTCG+CGG | + | chr3_4:7608735-7608754 | None:intergenic | 35.0% | |
| CGAGAATAAACACACACATA+AGG | - | chr3_4:7608735-7608754 | Msa0488260:CDS | 35.0% | |
| CAAAAACTCCAAATCTGATG+AGG | - | chr3_4:7609075-7609094 | Msa0488260:CDS | 35.0% | |
| CGAGTTACCAATAAGATCAT+TGG | + | chr3_4:7609167-7609186 | None:intergenic | 35.0% | |
| ! | CTTATTGGTAACTCGCTTAT+CGG | - | chr3_4:7609172-7609191 | Msa0488260:CDS | 35.0% |
| ATCGGTGAAGAAAATGTAGA+CGG | - | chr3_4:7609190-7609209 | Msa0488260:CDS | 35.0% | |
| TAATTGTATTCATCACCACC+TGG | + | chr3_4:7609439-7609458 | None:intergenic | 35.0% | |
| GCTTCTAACAAAGAAGCTAA+AGG | - | chr3_4:7609490-7609509 | Msa0488260:CDS | 35.0% | |
| AATTTCTCTTCCGAAGAACA+CGG | + | chr3_4:7609562-7609581 | None:intergenic | 35.0% | |
| GTGAATCTTCAAAGTCACTA+TGG | - | chr3_4:7609896-7609915 | Msa0488260:CDS | 35.0% | |
| ! | ATTTTACTGCACATTGAGCA+TGG | - | chr3_4:7609925-7609944 | Msa0488260:CDS | 35.0% |
| TTGAGCATGGTTGAAGTTTA+CGG | - | chr3_4:7609938-7609957 | Msa0488260:CDS | 35.0% | |
| ! | AGAACAGTGATGATGATGTT+TGG | - | chr3_4:7610059-7610078 | Msa0488260:CDS | 35.0% |
| ! | TTCTTCTGAGAACGTTGAAA+TGG | - | chr3_4:7610108-7610127 | Msa0488260:CDS | 35.0% |
| CAAAACAGTTGAATCAACTG+TGG | + | chr3_4:7610824-7610843 | None:intergenic | 35.0% | |
| CCATGACTCAAAAATCTAGT+CGG | - | chr3_4:7610946-7610965 | Msa0488260:intron | 35.0% | |
| CCAATTGAACGATAACATAC+TGG | + | chr3_4:7611009-7611028 | None:intergenic | 35.0% | |
| CCAGTATGTTATCGTTCAAT+TGG | - | chr3_4:7611006-7611025 | Msa0488260:intron | 35.0% | |
| TTTGATCGTTCAATTCGGTT+AGG | - | chr3_4:7611054-7611073 | Msa0488260:intron | 35.0% | |
| TTGATCGTTCAATTCGGTTA+GGG | - | chr3_4:7611055-7611074 | Msa0488260:intron | 35.0% | |
| ! | AAAATAGAACAAAGGGCACA+AGG | - | chr3_4:7611098-7611117 | Msa0488260:intron | 35.0% |
| !! | GAGAAGTTAGTTTGTTAAGG+GGG | - | chr3_4:7611372-7611391 | Msa0488260:intron | 35.0% |
| AGTAGAGTAATTAAACGGAG+TGG | - | chr3_4:7611563-7611582 | Msa0488260:intron | 35.0% | |
| ACAGTTAAAATGAGAGAAGG+AGG | - | chr3_4:7611704-7611723 | Msa0488260:CDS | 35.0% | |
| CAGTTAAAATGAGAGAAGGA+GGG | - | chr3_4:7611705-7611724 | Msa0488260:CDS | 35.0% | |
| ! | AAATCCAGGAAATTTTGCCA+AGG | - | chr3_4:7612164-7612183 | Msa0488260:five_prime_UTR | 35.0% |
| ATGAATCTCAGATACCTCGA+AGG | + | chr3_4:7607295-7607314 | None:intergenic | 40.0% | |
| ! | ATTGATTTCTTGTCTGGCCT+CGG | - | chr3_4:7607859-7607878 | Msa0488260:intron | 40.0% |
| AGGTAGAAATGTTAGCACCA+GGG | - | chr3_4:7607932-7607951 | Msa0488260:intron | 40.0% | |
| TGTACGAATAAGGAGGTTCA+TGG | + | chr3_4:7607964-7607983 | None:intergenic | 40.0% | |
| TGTTAGAGACAGGGAAATGT+TGG | - | chr3_4:7608017-7608036 | Msa0488260:intron | 40.0% | |
| GAAGGACTAGATCGATGTTT+GGG | + | chr3_4:7608090-7608109 | None:intergenic | 40.0% | |
| CAAACATCGATCTAGTCCTT+CGG | - | chr3_4:7608089-7608108 | Msa0488260:intron | 40.0% | |
| AAACATCGATCTAGTCCTTC+GGG | - | chr3_4:7608090-7608109 | Msa0488260:intron | 40.0% | |
| !! | TTTCTAGCTTCGGGAAATCA+CGG | + | chr3_4:7608682-7608701 | None:intergenic | 40.0% |
| ! | CAAGCTTTAACCTCATCACA+AGG | - | chr3_4:7608704-7608723 | Msa0488260:CDS | 40.0% |
| ! | AAGGAAAGGTACATTGCAGT+TGG | - | chr3_4:7608754-7608773 | Msa0488260:CDS | 40.0% |
| !! | AGATGTTTCTGGAGAAGTTC+CGG | - | chr3_4:7609012-7609031 | Msa0488260:CDS | 40.0% |
| TTCCAGTTTGATACCACAAC+CGG | + | chr3_4:7609034-7609053 | None:intergenic | 40.0% | |
| ACTGGAACAAAGATGAGCAA+AGG | - | chr3_4:7609047-7609066 | Msa0488260:CDS | 40.0% | |
| TCAGAGTAGAAAGTCTCAGA+AGG | + | chr3_4:7609133-7609152 | None:intergenic | 40.0% | |
| ! | AATTGGAGTACTAGTCCATC+CGG | - | chr3_4:7609391-7609410 | Msa0488260:CDS | 40.0% |
| CTATGTATTACACTTCCGGA+TGG | + | chr3_4:7609409-7609428 | None:intergenic | 40.0% | |
| GTAATACATAGAGTAGAGCC+AGG | - | chr3_4:7609418-7609437 | Msa0488260:CDS | 40.0% | |
| TCCAAGAAAGATCCAATCGT+CGG | + | chr3_4:7609801-7609820 | None:intergenic | 40.0% | |
| ! | GGCTCAAAGATTTGTTCTTC+AGG | - | chr3_4:7609847-7609866 | Msa0488260:CDS | 40.0% |
| TTGTTCTTCAGGAACCGAAA+TGG | - | chr3_4:7609858-7609877 | Msa0488260:CDS | 40.0% | |
| TGTTCTTCAGGAACCGAAAT+GGG | - | chr3_4:7609859-7609878 | Msa0488260:CDS | 40.0% | |
| ATCTTGAGAATAGTATCCCC+CGG | + | chr3_4:7610190-7610209 | None:intergenic | 40.0% | |
| !!! | ATCGGTTTTGGAGCAGTATT+TGG | - | chr3_4:7610246-7610265 | Msa0488260:CDS | 40.0% |
| !!! | TTAGGGACAATGCTGTTTTG+AGG | - | chr3_4:7610574-7610593 | Msa0488260:intron | 40.0% |
| !!! | ACAATGCTGTTTTGAGGTGA+GGG | - | chr3_4:7610580-7610599 | Msa0488260:intron | 40.0% |
| CATGAGAGTCAGATTAGACA+TGG | - | chr3_4:7610746-7610765 | Msa0488260:intron | 40.0% | |
| !!! | CTGGTTGGTTTTGACAACAT+TGG | + | chr3_4:7610785-7610804 | None:intergenic | 40.0% |
| !!! | CCGACTAGATTTTTGAGTCA+TGG | + | chr3_4:7610949-7610968 | None:intergenic | 40.0% |
| ATCATCGATGTTATCCGAAC+TGG | + | chr3_4:7610985-7611004 | None:intergenic | 40.0% | |
| !!! | GTCACTTTTGGACTGTGTAA+TGG | + | chr3_4:7611194-7611213 | None:intergenic | 40.0% |
| ! | GTGATCAAACTAGAGTTGGT+TGG | - | chr3_4:7611233-7611252 | Msa0488260:intron | 40.0% |
| !! | AAGTTAGTTTGTTAAGGGGG+AGG | - | chr3_4:7611375-7611394 | Msa0488260:intron | 40.0% |
| ! | AGGATGAATTTGATGGCAGT+AGG | - | chr3_4:7611395-7611414 | Msa0488260:intron | 40.0% |
| TCTCTATGACCAAGTAGTGT+CGG | - | chr3_4:7611754-7611773 | Msa0488260:exon | 40.0% | |
| TAAGTGGGACTCTTACATCA+AGG | - | chr3_4:7611838-7611857 | Msa0488260:intron | 40.0% | |
| ACTACCTTGGCAAAATTTCC+TGG | + | chr3_4:7612171-7612190 | None:intergenic | 40.0% | |
| ! | TCTTTAGAGAAGGCTGCTAG+TGG | - | chr3_4:7607569-7607588 | Msa0488260:intron | 45.0% |
| ! | CTTTAGAGAAGGCTGCTAGT+GGG | - | chr3_4:7607570-7607589 | Msa0488260:intron | 45.0% |
| AGTTGTGGCAATGGATATGG+AGG | - | chr3_4:7607671-7607690 | Msa0488260:intron | 45.0% | |
| GAGGTAGAAATGTTAGCACC+AGG | - | chr3_4:7607931-7607950 | Msa0488260:intron | 45.0% | |
| ACAGGGAAATGTTGGTACCA+GGG | - | chr3_4:7608025-7608044 | Msa0488260:intron | 45.0% | |
| ! | ATCGATGTTTGGGACAACGA+AGG | + | chr3_4:7608080-7608099 | None:intergenic | 45.0% |
| CGAAGGACTAGATCGATGTT+TGG | + | chr3_4:7608091-7608110 | None:intergenic | 45.0% | |
| AACATCGATCTAGTCCTTCG+GGG | - | chr3_4:7608091-7608110 | Msa0488260:intron | 45.0% | |
| TTCCGGTTGTGGTATCAAAC+TGG | - | chr3_4:7609029-7609048 | Msa0488260:CDS | 45.0% | |
| TCTCGACGAATTCAAGAGCA+GGG | - | chr3_4:7609351-7609370 | Msa0488260:CDS | 45.0% | |
| ATACATAGAGTAGAGCCAGG+TGG | - | chr3_4:7609421-7609440 | Msa0488260:CDS | 45.0% | |
| TCTTCGGAATCCGTGTTCTT+CGG | - | chr3_4:7609549-7609568 | Msa0488260:intron | 45.0% | |
| AGAAAGATCCAATCGTCGGT+CGG | + | chr3_4:7609797-7609816 | None:intergenic | 45.0% | |
| ACCGACGATTGGATCTTTCT+TGG | - | chr3_4:7609797-7609816 | Msa0488260:CDS | 45.0% | |
| TACTGCCTCAAATGTGAAGC+AGG | - | chr3_4:7609826-7609845 | Msa0488260:CDS | 45.0% | |
| TTGAGCCTGCTTCACATTTG+AGG | + | chr3_4:7609834-7609853 | None:intergenic | 45.0% | |
| TGCTGTTGAGAAAATGCTCG+AGG | - | chr3_4:7609967-7609986 | Msa0488260:CDS | 45.0% | |
| GTTCTCGAACGAGTTACGAT+CGG | + | chr3_4:7610044-7610063 | None:intergenic | 45.0% | |
| !!! | GGTTTTGGAGCAGTATTTGG+AGG | - | chr3_4:7610249-7610268 | Msa0488260:CDS | 45.0% |
| !!! | GACAATGCTGTTTTGAGGTG+AGG | - | chr3_4:7610579-7610598 | Msa0488260:intron | 45.0% |
| AAAACCAACCAGACCGAACT+GGG | - | chr3_4:7610793-7610812 | Msa0488260:intron | 45.0% | |
| AACTGTGGTTGAACCCAGTT+CGG | + | chr3_4:7610809-7610828 | None:intergenic | 45.0% | |
| GTTAGATCTCCAGTCCAGTT+CGG | - | chr3_4:7610968-7610987 | Msa0488260:intron | 45.0% | |
| GAGGTCACAAGCTCAAATCA+AGG | + | chr3_4:7611144-7611163 | None:intergenic | 45.0% | |
| CAAGTTGTTGCCTTGTGACT+TGG | + | chr3_4:7611171-7611190 | None:intergenic | 45.0% | |
| GGCAGTGATCAAACTAGAGT+TGG | - | chr3_4:7611229-7611248 | Msa0488260:intron | 45.0% | |
| AAGGGGGAGGATGAATTTGA+TGG | - | chr3_4:7611388-7611407 | Msa0488260:intron | 45.0% | |
| CTCTATGACCAAGTAGTGTC+GGG | - | chr3_4:7611755-7611774 | Msa0488260:exon | 45.0% | |
| AAATCAGACCCGACACTACT+TGG | + | chr3_4:7611766-7611785 | None:intergenic | 45.0% | |
| TTTGCCAAGGTAGTTCTTCC+TGG | - | chr3_4:7612177-7612196 | Msa0488260:five_prime_UTR | 45.0% | |
| GAAACCAGGAAGAACTACCT+TGG | + | chr3_4:7612184-7612203 | None:intergenic | 45.0% | |
| !!! | TGTTTTAAATTTTTTTTATA+AGG | + | chr3_4:7608545-7608564 | None:intergenic | 5.0% |
| !!! | TATAAAAAAAATTTAAAACA+AGG | - | chr3_4:7608545-7608564 | Msa0488260:intron | 5.0% |
| AGGTATCCTTAGCGCACAAC+TGG | - | chr3_4:7607259-7607278 | Msa0488260:CDS | 50.0% | |
| GGTATCCTTAGCGCACAACT+GGG | - | chr3_4:7607260-7607279 | Msa0488260:CDS | 50.0% | |
| GTATCCTTAGCGCACAACTG+GGG | - | chr3_4:7607261-7607280 | Msa0488260:CDS | 50.0% | |
| GGTTGACCTCTTCCCTCAAA+TGG | - | chr3_4:7607321-7607340 | Msa0488260:intron | 50.0% | |
| GACAGGGAAATGTTGGTACC+AGG | - | chr3_4:7608024-7608043 | Msa0488260:intron | 50.0% | |
| CAGGGAAATGTTGGTACCAG+GGG | - | chr3_4:7608026-7608045 | Msa0488260:intron | 50.0% | |
| CGAGAATCACAAACTGGACG+CGG | + | chr3_4:7608640-7608659 | None:intergenic | 50.0% | |
| GAGACGCGAGAATCACAAAC+TGG | + | chr3_4:7608646-7608665 | None:intergenic | 50.0% | |
| GTGTGTGTTTATTCTCGCGG+TGG | + | chr3_4:7608732-7608751 | None:intergenic | 50.0% | |
| ! | TTCTGGAGAAGTTCCGGTTG+TGG | - | chr3_4:7609018-7609037 | Msa0488260:CDS | 50.0% |
| TTGAATTCGTCGAGACCGAG+CGG | + | chr3_4:7609346-7609365 | None:intergenic | 50.0% | |
| GTCTCGACGAATTCAAGAGC+AGG | - | chr3_4:7609350-7609369 | Msa0488260:CDS | 50.0% | |
| TGGTTTATCCGACCGACGAT+TGG | - | chr3_4:7609786-7609805 | Msa0488260:CDS | 50.0% | |
| TCGAACGAGTTACGATCGGA+CGG | + | chr3_4:7610040-7610059 | None:intergenic | 50.0% | |
| TGTTGCCGTGCTTCATCGAT+CGG | + | chr3_4:7610154-7610173 | None:intergenic | 50.0% | |
| GATGAAGCACGGCAACAAGT+TGG | - | chr3_4:7610157-7610176 | Msa0488260:CDS | 50.0% | |
| CAAAACCAACCAGACCGAAC+TGG | - | chr3_4:7610792-7610811 | Msa0488260:intron | 50.0% | |
| CGATGTTATCCGAACTGGAC+TGG | + | chr3_4:7610980-7610999 | None:intergenic | 50.0% | |
| ! | GTTGTTGCCTTGTGACTTGG+AGG | + | chr3_4:7611168-7611187 | None:intergenic | 50.0% |
| CTGGGGAGACTAATCCTTCG+AGG | - | chr3_4:7607278-7607297 | Msa0488260:intron | 55.0% | |
| GAGGTTCATGGTTCGATCCC+TGG | + | chr3_4:7607952-7607971 | None:intergenic | 55.0% | |
| GAGATTCAGGGTTGAACCCC+TGG | + | chr3_4:7608045-7608064 | None:intergenic | 55.0% | |
| CGTGCTTCATCGATCGGATC+CGG | + | chr3_4:7610148-7610167 | None:intergenic | 55.0% | |
| CGGATCCGATCGATGAAGCA+CGG | - | chr3_4:7610146-7610165 | Msa0488260:CDS | 55.0% | |
| ! | AAGCACGGCAACAAGTTGGC+AGG | - | chr3_4:7610161-7610180 | Msa0488260:CDS | 55.0% |
| ! | GCAACAAGTTGGCAGGATGC+CGG | - | chr3_4:7610168-7610187 | Msa0488260:CDS | 55.0% |
| ! | CAACAAGTTGGCAGGATGCC+GGG | - | chr3_4:7610169-7610188 | Msa0488260:CDS | 55.0% |
| ! | AACAAGTTGGCAGGATGCCG+GGG | - | chr3_4:7610170-7610189 | Msa0488260:CDS | 55.0% |
| TGAACCCAGTTCGGTCTGGT+TGG | + | chr3_4:7610800-7610819 | None:intergenic | 55.0% | |
| TGGTTGAACCCAGTTCGGTC+TGG | + | chr3_4:7610804-7610823 | None:intergenic | 55.0% | |
| ! | CAAAGGGCACAAGGCACAAG+TGG | - | chr3_4:7611107-7611126 | Msa0488260:intron | 55.0% |
| GACCTCACCTCCAAGTCACA+AGG | - | chr3_4:7611158-7611177 | Msa0488260:intron | 55.0% | |
| ! | TGCCTTGTGACTTGGAGGTG+AGG | + | chr3_4:7611163-7611182 | None:intergenic | 55.0% |
| GTCTCCCCAGTTGTGCGCTA+AGG | + | chr3_4:7607268-7607287 | None:intergenic | 60.0% | |
| CGATCTAGTCCTTCGGGGAC+AGG | - | chr3_4:7608096-7608115 | Msa0488260:intron | 60.0% | |
| CATGGATAGCCTGTCCCCGA+AGG | + | chr3_4:7608108-7608127 | None:intergenic | 60.0% | |
| ! | ACAAGTTGGCAGGATGCCGG+GGG | - | chr3_4:7610171-7610190 | Msa0488260:CDS | 60.0% |
| CGCGGTGGCACCTTGTGATG+AGG | + | chr3_4:7608717-7608736 | None:intergenic | 65.0% | |
| ! | TTGTCTGCAGCCGTGCCGCT+CGG | - | chr3_4:7609328-7609347 | Msa0488260:CDS | 65.0% |
| TTCGTCGAGACCGAGCGGCA+CGG | + | chr3_4:7609341-7609360 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 7606989 | 7612306 | 7606989 | ID=Msa0488260;Name=Msa0488260 |
| chr3_4 | mRNA | 7606989 | 7612306 | 7606989 | ID=Msa0488260-mRNA-1;Parent=Msa0488260;Name=Msa0488260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=363|0.8|0.66|1|0.8|0.66|6|56|556 |
| chr3_4 | exon | 7606989 | 7607291 | 7606989 | ID=Msa0488260-mRNA-1:exon:2666;Parent=Msa0488260-mRNA-1 |
| chr3_4 | exon | 7608700 | 7608785 | 7608700 | ID=Msa0488260-mRNA-1:exon:2665;Parent=Msa0488260-mRNA-1 |
| chr3_4 | exon | 7608902 | 7609530 | 7608902 | ID=Msa0488260-mRNA-1:exon:2664;Parent=Msa0488260-mRNA-1 |
| chr3_4 | exon | 7609733 | 7610281 | 7609733 | ID=Msa0488260-mRNA-1:exon:2663;Parent=Msa0488260-mRNA-1 |
| chr3_4 | exon | 7611603 | 7611792 | 7611603 | ID=Msa0488260-mRNA-1:exon:2662;Parent=Msa0488260-mRNA-1 |
| chr3_4 | exon | 7611974 | 7612306 | 7611974 | ID=Msa0488260-mRNA-1:exon:2661;Parent=Msa0488260-mRNA-1 |
| chr3_4 | five_prime_UTR | 7611974 | 7612306 | 7611974 | ID=Msa0488260-mRNA-1:five_prime_utr;Parent=Msa0488260-mRNA-1 |
| chr3_4 | five_prime_UTR | 7611763 | 7611792 | 7611763 | ID=Msa0488260-mRNA-1:five_prime_utr;Parent=Msa0488260-mRNA-1 |
| chr3_4 | CDS | 7611603 | 7611762 | 7611603 | ID=Msa0488260-mRNA-1:cds;Parent=Msa0488260-mRNA-1 |
| chr3_4 | CDS | 7609733 | 7610281 | 7609733 | ID=Msa0488260-mRNA-1:cds;Parent=Msa0488260-mRNA-1 |
| chr3_4 | CDS | 7608902 | 7609530 | 7608902 | ID=Msa0488260-mRNA-1:cds;Parent=Msa0488260-mRNA-1 |
| chr3_4 | CDS | 7608700 | 7608785 | 7608700 | ID=Msa0488260-mRNA-1:cds;Parent=Msa0488260-mRNA-1 |
| chr3_4 | CDS | 7607045 | 7607291 | 7607045 | ID=Msa0488260-mRNA-1:cds;Parent=Msa0488260-mRNA-1 |
| chr3_4 | three_prime_UTR | 7606989 | 7607044 | 7606989 | ID=Msa0488260-mRNA-1:three_prime_utr;Parent=Msa0488260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
