Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339730 | XP_003591227.1 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 4.57e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339730 | sp|Q8LEK2|TVP23_ARATH | 83.333 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 6.49e-112 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339730 | G7I9I7 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 2.18e-128 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093010 | Msa1339730 | 0.826544 | 2.559714e-54 | -8.615850e-47 |
| Msa0619860 | Msa1339730 | 0.802057 | 6.718894e-49 | -8.615850e-47 |
| Msa0693210 | Msa1339730 | 0.839455 | 1.568973e-57 | -8.615850e-47 |
| Msa0706500 | Msa1339730 | 0.806391 | 8.414705e-50 | -8.615850e-47 |
| Msa0838370 | Msa1339730 | 0.815910 | 7.255622e-52 | -8.615850e-47 |
| Msa0202490 | Msa1339730 | 0.836388 | 9.637351e-57 | -8.615850e-47 |
| Msa1233850 | Msa1339730 | 0.822760 | 1.993212e-53 | -8.615850e-47 |
| Msa1276150 | Msa1339730 | 0.804263 | 2.349607e-49 | -8.615850e-47 |
| Msa1331250 | Msa1339730 | 0.808739 | 2.670365e-50 | -8.615850e-47 |
| Msa0385500 | Msa1339730 | 0.809321 | 2.005016e-50 | -8.615850e-47 |
| Msa0413530 | Msa1339730 | 0.805190 | 1.504725e-49 | -8.615850e-47 |
| Msa0423750 | Msa1339730 | 0.802052 | 6.734937e-49 | -8.615850e-47 |
| Msa0458370 | Msa1339730 | -0.805364 | 1.383735e-49 | -8.615850e-47 |
| Msa0460740 | Msa1339730 | 0.801152 | 1.030387e-48 | -8.615850e-47 |
| Msa0470530 | Msa1339730 | 0.819428 | 1.167584e-52 | -8.615850e-47 |
| Msa0244980 | Msa1339730 | 0.848489 | 5.934667e-60 | -8.615850e-47 |
| Msa0245430 | Msa1339730 | 0.801901 | 7.234242e-49 | -8.615850e-47 |
| Msa0245580 | Msa1339730 | 0.857578 | 1.483590e-62 | -8.615850e-47 |
| Msa0269470 | Msa1339730 | 0.819171 | 1.336042e-52 | -8.615850e-47 |
| Msa0284180 | Msa1339730 | 0.841831 | 3.742783e-58 | -8.615850e-47 |
| Msa1157800 | Msa1339730 | 0.827505 | 1.507795e-54 | -8.615850e-47 |
| Msa1178580 | Msa1339730 | 0.805773 | 1.135462e-49 | -8.615850e-47 |
| Msa0511770 | Msa1339730 | 0.802922 | 4.456660e-49 | -8.615850e-47 |
| Msa0858440 | Msa1339730 | 0.822742 | 2.013497e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339730 | MtrunA17_Chr1g0193001 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 4.20e-132 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339730 | AT1G09330.1 | 83.333 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 6.60e-113 | 319 |
| Msa1339730 | AT1G09330.2 | 86.957 | 115 | 12 | 1 | 1 | 112 | 1 | 115 | 1.64e-69 | 207 |
Find 51 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGCCATTTCTCATAAA+AGG | 0.194752 | tig0003362:+15602 | None:intergenic |
| TCGCAAATCTAACAAACTTT+TGG | 0.230443 | tig0003362:-18351 | Msa1339730:five_prime_UTR |
| TTTGGTAAAACCAACGATAT+TGG | 0.281162 | tig0003362:+16806 | None:intergenic |
| TTTCTTTCACGTTCTCTTCA+AGG | 0.281442 | tig0003362:-18040 | Msa1339730:intron |
| AACGTTGAATTTACCTGGTT+GGG | 0.320527 | tig0003362:+18205 | None:intergenic |
| GCTGATTATCTCCTTGTTGT+AGG | 0.355434 | tig0003362:-16852 | Msa1339730:CDS |
| ATGATCTTGGTGAGAGTGTT+TGG | 0.360765 | tig0003362:-17779 | Msa1339730:CDS |
| GTTAGATTTGCGAGTAAGAT+TGG | 0.376947 | tig0003362:+18361 | None:intergenic |
| ATTCTCCCTCATAAGGCTTC+AGG | 0.382513 | tig0003362:-16874 | Msa1339730:CDS |
| AGTAACTATGCAAGTTTGAT+AGG | 0.391251 | tig0003362:+15650 | None:intergenic |
| TTCTCTTACCGCAAGGTAAA+GGG | 0.399828 | tig0003362:+17274 | None:intergenic |
| AATCAGCCTGAAGCCTTATG+AGG | 0.430875 | tig0003362:+16868 | None:intergenic |
| TGGCAATATTCTCCCTCATA+AGG | 0.431645 | tig0003362:-16881 | Msa1339730:CDS |
| ATTCTCTTACCGCAAGGTAA+AGG | 0.432253 | tig0003362:+17273 | None:intergenic |
| TGCAAGTTTGATAGGTAGTC+AGG | 0.436157 | tig0003362:+15658 | None:intergenic |
| TCTCAGCAAGGTGTAAAATC+TGG | 0.437505 | tig0003362:-18294 | Msa1339730:five_prime_UTR |
| AACACTAAATGCTGACTGTA+AGG | 0.448188 | tig0003362:+15786 | None:intergenic |
| TATTTGACAGGCTGCGGCGT+TGG | 0.458780 | tig0003362:-17946 | Msa1339730:intron |
| TTTCACTGCAGTCATTGGCT+AGG | 0.465921 | tig0003362:-17331 | Msa1339730:intron |
| ATGTTGCTTGAACGGACTAA+AGG | 0.467952 | tig0003362:+18396 | None:intergenic |
| AAACGTTGAATTTACCTGGT+TGG | 0.477789 | tig0003362:+18204 | None:intergenic |
| TGTTGCTTGAACGGACTAAA+GGG | 0.478414 | tig0003362:+18397 | None:intergenic |
| CTCAGCATTGCCAATATCGT+TGG | 0.478560 | tig0003362:-16816 | Msa1339730:CDS |
| CCTCTCAGACAATTGCCTCT+CGG | 0.479391 | tig0003362:-15819 | Msa1339730:CDS |
| GGATGAACAAGAAAGATTCA+TGG | 0.490476 | tig0003362:-17310 | Msa1339730:CDS |
| CTCTCTCTGAAGCTCACACA+TGG | 0.502080 | tig0003362:-18230 | Msa1339730:exon |
| TGGAATGAAATTGATGATCT+TGG | 0.506140 | tig0003362:-17792 | Msa1339730:CDS |
| AAAGAAACAAGTCCTTGGAT+TGG | 0.535242 | tig0003362:+18056 | None:intergenic |
| TCTAATAATGCAGTAATGCA+TGG | 0.537001 | tig0003362:+15740 | None:intergenic |
| ACGTGAAAGAAACAAGTCCT+TGG | 0.537123 | tig0003362:+18051 | None:intergenic |
| GAATACTTACATCTTGATCA+AGG | 0.554101 | tig0003362:+17745 | None:intergenic |
| GAGAAGGAACGAAGCTTGTG+AGG | 0.561571 | tig0003362:+18250 | None:intergenic |
| AACGATATTGGCAATGCTGA+GGG | 0.574974 | tig0003362:+16818 | None:intergenic |
| TTAGAAATATTGAGATGTGG+AGG | 0.578732 | tig0003362:-15722 | Msa1339730:three_prime_UTR |
| TGGGTGGTTAAGAATGTCAG+TGG | 0.584529 | tig0003362:-17840 | Msa1339730:CDS |
| CTCACACATGGATCCCAACC+AGG | 0.591438 | tig0003362:-18218 | Msa1339730:intron |
| AATAAGCAGGTAACCACTCG+TGG | 0.598050 | tig0003362:+15477 | None:intergenic |
| CAACGATATTGGCAATGCTG+AGG | 0.602070 | tig0003362:+16817 | None:intergenic |
| AAATTATGCAAAATAATACA+AGG | 0.604454 | tig0003362:+15516 | None:intergenic |
| GTCAGGATCCAGTCTGATGT+CGG | 0.604742 | tig0003362:+15675 | None:intergenic |
| ATCAGCCTGAAGCCTTATGA+GGG | 0.607448 | tig0003362:+16869 | None:intergenic |
| GTGTGAGCTTCAGAGAGAGA+AGG | 0.607807 | tig0003362:+18234 | None:intergenic |
| TTATTAGAAATATTGAGATG+TGG | 0.614818 | tig0003362:-15725 | Msa1339730:three_prime_UTR |
| CCGAGAGGCAATTGTCTGAG+AGG | 0.623720 | tig0003362:+15819 | None:intergenic |
| TTGAAAACTACTCCAATCCA+AGG | 0.632706 | tig0003362:-18068 | Msa1339730:CDS |
| CTGGTGGACCCTTTACCTTG+CGG | 0.632785 | tig0003362:-17282 | Msa1339730:intron |
| AAAGATCTATGTTCCACGAG+TGG | 0.652955 | tig0003362:-15490 | Msa1339730:three_prime_UTR |
| TTATTGTTAGAAGAAATGCA+CGG | 0.710354 | tig0003362:+18436 | None:intergenic |
| TTGTGAGGAATCAACGACGA+TGG | 0.712432 | tig0003362:+18265 | None:intergenic |
| TCAAACAAACTCCTACAACA+AGG | 0.714274 | tig0003362:+16841 | None:intergenic |
| TAAGGTAGATGAAAACCGAG+AGG | 0.750436 | tig0003362:+15804 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAATTGTTTATTTTC+AGG | - | tig0003362:18344-18363 | Msa1339730:five_prime_UTR | 10.0% |
| !! | TTCTTCTAACAATAAAAAAA+TGG | - | tig0003362:15470-15489 | Msa1339730:three_prime_UTR | 15.0% |
| !!! | GTAATATGTTTTTTGAAATA+AGG | - | tig0003362:16201-16220 | Msa1339730:intron | 15.0% |
| !! | ATAAAATTTATCACTTTAGT+TGG | + | tig0003362:16818-16837 | None:intergenic | 15.0% |
| !! | AAATTATGCAAAATAATACA+AGG | + | tig0003362:18385-18404 | None:intergenic | 15.0% |
| !!! | TAACTTTGTAATCATTTTTG+TGG | - | tig0003362:16006-16025 | Msa1339730:intron | 20.0% |
| !!! | AAGTATTCTTTGTTTTGATT+AGG | - | tig0003362:16168-16187 | Msa1339730:intron | 20.0% |
| !!! | TTTTATTTATGCTTTGTATC+TGG | - | tig0003362:16832-16851 | Msa1339730:CDS | 20.0% |
| !!! | TTTTATTTGTATTGTTCTAC+AGG | - | tig0003362:16976-16995 | Msa1339730:intron | 20.0% |
| !!! | TTCTTTTTATATTGCAGAAT+TGG | - | tig0003362:17164-17183 | Msa1339730:intron | 20.0% |
| !! | TCAAAATGAAAAAAAGAAAC+AGG | + | tig0003362:17312-17331 | None:intergenic | 20.0% |
| !! | TGAAAATTCTAACTATAGTT+TGG | - | tig0003362:17337-17356 | Msa1339730:intron | 20.0% |
| !! | TACAATCATAAATTTCCATT+TGG | + | tig0003362:17426-17445 | None:intergenic | 20.0% |
| !! | TAATTAATACAACAAATTGC+TGG | - | tig0003362:18018-18037 | Msa1339730:intron | 20.0% |
| !! | TTATTAGAAATATTGAGATG+TGG | - | tig0003362:18173-18192 | Msa1339730:intron | 20.0% |
| ! | TTATTGTTAGAAGAAATGCA+CGG | + | tig0003362:15465-15484 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGATTAGGTTTCA+GGG | - | tig0003362:16176-16195 | Msa1339730:intron | 25.0% |
| ! | ATTAAGTAGTTTATCCAAAC+AGG | + | tig0003362:16227-16246 | None:intergenic | 25.0% |
| ! | TTGAAATAAGCTAATCCAAA+TGG | - | tig0003362:16446-16465 | Msa1339730:intron | 25.0% |
| ! | TGAAATAAGCTAATCCAAAT+GGG | - | tig0003362:16447-16466 | Msa1339730:intron | 25.0% |
| !!! | ATTTTGACTATAACACCATA+AGG | + | tig0003362:16698-16717 | None:intergenic | 25.0% |
| !! | AATTTTGCTCTTTTTATGGT+AGG | + | tig0003362:16920-16939 | None:intergenic | 25.0% |
| !! | TTATATTGCAGAATTGGTTT+AGG | - | tig0003362:17170-17189 | Msa1339730:intron | 25.0% |
| ! | ATTTGTAATTTCCTAAGGAT+GGG | - | tig0003362:17485-17504 | Msa1339730:intron | 25.0% |
| ! | ATAACATCTTTCAATTTCCT+GGG | + | tig0003362:17683-17702 | None:intergenic | 25.0% |
| ! | AATAACATCTTTCAATTTCC+TGG | + | tig0003362:17684-17703 | None:intergenic | 25.0% |
| ! | AATTTATAGTACCCTGTTTA+TGG | - | tig0003362:17761-17780 | Msa1339730:CDS | 25.0% |
| ! | ATTTATAGTACCCTGTTTAT+GGG | - | tig0003362:17762-17781 | Msa1339730:CDS | 25.0% |
| !! | TTTGTACCTTTTATGAGAAA+TGG | - | tig0003362:18290-18309 | Msa1339730:five_prime_UTR | 25.0% |
| !! | AATTTTGCATGAAAATAAGC+AGG | + | tig0003362:18437-18456 | None:intergenic | 25.0% |
| !!! | TGCTTATTTTCATGCAAAAT+TGG | - | tig0003362:18436-18455 | Msa1339730:five_prime_UTR | 25.0% |
| !! | TTTTCTCTATGTTGCTTGAA+CGG | + | tig0003362:15513-15532 | None:intergenic | 30.0% |
| ! | TCGCAAATCTAACAAACTTT+TGG | - | tig0003362:15547-15566 | Msa1339730:three_prime_UTR | 30.0% |
| AAGAAAACGTTGAATTTACC+TGG | + | tig0003362:15701-15720 | None:intergenic | 30.0% | |
| ATTGAAACCAGATCTAAGAA+TGG | + | tig0003362:15727-15746 | None:intergenic | 30.0% | |
| ! | TGTTGTCTTTTGTATTTGAC+AGG | - | tig0003362:15940-15959 | Msa1339730:intron | 30.0% |
| ! | GTTGGCATTTTACATTCTAT+CGG | - | tig0003362:15970-15989 | Msa1339730:intron | 30.0% |
| !!! | GAATTTTAGTTGGAATGAGA+TGG | - | tig0003362:16083-16102 | Msa1339730:intron | 30.0% |
| ! | TGGAATGAAATTGATGATCT+TGG | - | tig0003362:16106-16125 | Msa1339730:intron | 30.0% |
| GAATACTTACATCTTGATCA+AGG | + | tig0003362:16156-16175 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTGATTAGGTTTC+AGG | - | tig0003362:16175-16194 | Msa1339730:intron | 30.0% |
| !!! | TTGTTTTGATTAGGTTTCAG+GGG | - | tig0003362:16177-16196 | Msa1339730:intron | 30.0% |
| !!! | TTTTTGAAATAAGGCCTGTT+TGG | - | tig0003362:16210-16229 | Msa1339730:intron | 30.0% |
| !!! | TTTTTTTTCACTGCAGTCAT+TGG | - | tig0003362:16562-16581 | Msa1339730:intron | 30.0% |
| !! | ATGGTGTTATAGTCAAAATG+TGG | - | tig0003362:16699-16718 | Msa1339730:intron | 30.0% |
| ACTTTCTGAATAAGTCTGAT+CGG | + | tig0003362:16759-16778 | None:intergenic | 30.0% | |
| GTTTAGTACTAAATAAGCTG+CGG | - | tig0003362:16788-16807 | Msa1339730:intron | 30.0% | |
| ATTTATGCTTTGTATCTGGA+TGG | - | tig0003362:16836-16855 | Msa1339730:CDS | 30.0% | |
| ! | GCACAATTTTGCTCTTTTTA+TGG | + | tig0003362:16924-16943 | None:intergenic | 30.0% |
| ! | AAATTGTGCTTTCTGGTATT+TGG | - | tig0003362:16935-16954 | Msa1339730:intron | 30.0% |
| TTTGGTAAAACCAACGATAT+TGG | + | tig0003362:17095-17114 | None:intergenic | 30.0% | |
| ! | GGTTTTACCAAATGCAAAAA+AGG | - | tig0003362:17103-17122 | Msa1339730:intron | 30.0% |
| !!! | TTACACACCTTTTTTGCATT+TGG | + | tig0003362:17113-17132 | None:intergenic | 30.0% |
| TACTAAATGCATGTACCAAA+TGG | - | tig0003362:17408-17427 | Msa1339730:intron | 30.0% | |
| TAGTCATGTTAAGGTGTAAT+TGG | + | tig0003362:17453-17472 | None:intergenic | 30.0% | |
| ACACCTTAACATGACTAATT+TGG | - | tig0003362:17456-17475 | Msa1339730:intron | 30.0% | |
| TGACCAAATTAGTCATGTTA+AGG | + | tig0003362:17462-17481 | None:intergenic | 30.0% | |
| !! | CACTGATTTGTAATTTCCTA+AGG | - | tig0003362:17480-17499 | Msa1339730:intron | 30.0% |
| GATTTGTAATTTCCTAAGGA+TGG | - | tig0003362:17484-17503 | Msa1339730:intron | 30.0% | |
| GAGATAATCACCAAACTAAA+TGG | + | tig0003362:17627-17646 | None:intergenic | 30.0% | |
| ! | TTTGGTGATTATCTCTTGAA+AGG | - | tig0003362:17632-17651 | Msa1339730:intron | 30.0% |
| !!! | TTACAGCCATTGTTTTAGTT+GGG | - | tig0003362:17705-17724 | Msa1339730:intron | 30.0% |
| TTTATAGTACCCTGTTTATG+GGG | - | tig0003362:17763-17782 | Msa1339730:CDS | 30.0% | |
| GAAACACAAATGAAAACAAG+AGG | + | tig0003362:17804-17823 | None:intergenic | 30.0% | |
| TGAAAATGTGATGTGAATCT+AGG | + | tig0003362:17882-17901 | None:intergenic | 30.0% | |
| AAACAATAAACCAATGTGAG+GGG | + | tig0003362:17966-17985 | None:intergenic | 30.0% | |
| GAAACAATAAACCAATGTGA+GGG | + | tig0003362:17967-17986 | None:intergenic | 30.0% | |
| TGAAACAATAAACCAATGTG+AGG | + | tig0003362:17968-17987 | None:intergenic | 30.0% | |
| TCTAATAATGCAGTAATGCA+TGG | + | tig0003362:18161-18180 | None:intergenic | 30.0% | |
| TTAGAAATATTGAGATGTGG+AGG | - | tig0003362:18176-18195 | Msa1339730:intron | 30.0% | |
| AGTAACTATGCAAGTTTGAT+AGG | + | tig0003362:18251-18270 | None:intergenic | 30.0% | |
| TTCAAGCCATTTCTCATAAA+AGG | + | tig0003362:18299-18318 | None:intergenic | 30.0% | |
| GTTAGATTTGCGAGTAAGAT+TGG | + | tig0003362:15540-15559 | None:intergenic | 35.0% | |
| AACGTTGAATTTACCTGGTT+GGG | + | tig0003362:15696-15715 | None:intergenic | 35.0% | |
| AAACGTTGAATTTACCTGGT+TGG | + | tig0003362:15697-15716 | None:intergenic | 35.0% | |
| TCTTCAACCATTCTTAGATC+TGG | - | tig0003362:15717-15736 | Msa1339730:three_prime_UTR | 35.0% | |
| TTGAAAACTACTCCAATCCA+AGG | - | tig0003362:15830-15849 | Msa1339730:CDS | 35.0% | |
| AAAGAAACAAGTCCTTGGAT+TGG | + | tig0003362:15845-15864 | None:intergenic | 35.0% | |
| TTTCTTTCACGTTCTCTTCA+AGG | - | tig0003362:15858-15877 | Msa1339730:intron | 35.0% | |
| ! | TTCTTGCTGCTCTTGATTTT+TGG | - | tig0003362:16038-16057 | Msa1339730:intron | 35.0% |
| ! | TCTTGCTGCTCTTGATTTTT+GGG | - | tig0003362:16039-16058 | Msa1339730:intron | 35.0% |
| !! | GTCAGTGGAAGAATTTTAGT+TGG | - | tig0003362:16073-16092 | Msa1339730:intron | 35.0% |
| !! | TTTTAGTTGGAATGAGATGG+TGG | - | tig0003362:16086-16105 | Msa1339730:intron | 35.0% |
| GAGTAGCTGAAAACAACTAA+TGG | - | tig0003362:16357-16376 | Msa1339730:intron | 35.0% | |
| AAGCAATTGTGATACTGCTT+GGG | + | tig0003362:16412-16431 | None:intergenic | 35.0% | |
| AAAGCAATTGTGATACTGCT+TGG | + | tig0003362:16413-16432 | None:intergenic | 35.0% | |
| AACCTGACTAGCATAAGAAT+GGG | - | tig0003362:16504-16523 | Msa1339730:intron | 35.0% | |
| GGATGAACAAGAAAGATTCA+TGG | - | tig0003362:16588-16607 | Msa1339730:intron | 35.0% | |
| ! | AGAAAGATTCATGGCTTTTC+TGG | - | tig0003362:16597-16616 | Msa1339730:intron | 35.0% |
| CTATATATTCTCTTACCGCA+AGG | + | tig0003362:16634-16653 | None:intergenic | 35.0% | |
| TAGTCAAAATGTGGTTGTTC+TGG | - | tig0003362:16708-16727 | Msa1339730:intron | 35.0% | |
| CTTTCTGAATAAGTCTGATC+GGG | + | tig0003362:16758-16777 | None:intergenic | 35.0% | |
| AAGAGCAAAATTGTGCTTTC+TGG | - | tig0003362:16928-16947 | Msa1339730:intron | 35.0% | |
| TCAAACAAACTCCTACAACA+AGG | + | tig0003362:17060-17079 | None:intergenic | 35.0% | |
| AATATATCAAGCCCATCCTT+AGG | + | tig0003362:17499-17518 | None:intergenic | 35.0% | |
| ! | AAGGATGGGCTTGATATATT+TGG | - | tig0003362:17499-17518 | Msa1339730:intron | 35.0% |
| ATCACCAAACTAAATGGTTG+TGG | + | tig0003362:17621-17640 | None:intergenic | 35.0% | |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | - | tig0003362:17642-17661 | Msa1339730:intron | 35.0% |
| ! | GGCATTCATTTTATATTCCC+AGG | - | tig0003362:17663-17682 | Msa1339730:intron | 35.0% |
| !!! | GTTACAGCCATTGTTTTAGT+TGG | - | tig0003362:17704-17723 | Msa1339730:intron | 35.0% |
| TAATCGCCCAACTAAAACAA+TGG | + | tig0003362:17714-17733 | None:intergenic | 35.0% | |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | - | tig0003362:17642-17661 | Msa1339730:intron | 35.0% |
| TATGAAAACATTCTTGCCGT+AGG | - | tig0003362:17844-17863 | Msa1339730:CDS | 35.0% | |
| AGAAATCCTTCATATTGGGA+GGG | + | tig0003362:17941-17960 | None:intergenic | 35.0% | |
| AACAATAAACCAATGTGAGG+GGG | + | tig0003362:17965-17984 | None:intergenic | 35.0% | |
| ! | AACACTAAATGCTGACTGTA+AGG | + | tig0003362:18115-18134 | None:intergenic | 35.0% |
| !! | TGTTGCTTGAACGGACTAAA+GGG | + | tig0003362:15504-15523 | None:intergenic | 40.0% |
| !! | ATGTTGCTTGAACGGACTAA+AGG | + | tig0003362:15505-15524 | None:intergenic | 40.0% |
| CGATCTGAAAAATCTCAGCA+AGG | - | tig0003362:15592-15611 | Msa1339730:three_prime_UTR | 40.0% | |
| TCTCAGCAAGGTGTAAAATC+TGG | - | tig0003362:15604-15623 | Msa1339730:three_prime_UTR | 40.0% | |
| ACGTGAAAGAAACAAGTCCT+TGG | + | tig0003362:15850-15869 | None:intergenic | 40.0% | |
| ! | CTTTTGTATTTGACAGGCTG+CGG | - | tig0003362:15946-15965 | Msa1339730:intron | 40.0% |
| !! | ATGATCTTGGTGAGAGTGTT+TGG | - | tig0003362:16119-16138 | Msa1339730:intron | 40.0% |
| !! | ATACTGCTTGGGAGTGTTTA+TGG | + | tig0003362:16401-16420 | None:intergenic | 40.0% |
| ATAAGCTAATCCAAATGGGC+CGG | - | tig0003362:16451-16470 | Msa1339730:intron | 40.0% | |
| GAACCTGACTAGCATAAGAA+TGG | - | tig0003362:16503-16522 | Msa1339730:intron | 40.0% | |
| ACCTGACTAGCATAAGAATG+GGG | - | tig0003362:16505-16524 | Msa1339730:intron | 40.0% | |
| ! | AAGATTCATGGCTTTTCTGG+TGG | - | tig0003362:16600-16619 | Msa1339730:intron | 40.0% |
| TTCTCTTACCGCAAGGTAAA+GGG | + | tig0003362:16627-16646 | None:intergenic | 40.0% | |
| ATTCTCTTACCGCAAGGTAA+AGG | + | tig0003362:16628-16647 | None:intergenic | 40.0% | |
| !! | GTGATAGTTCACTTTTGCCT+AGG | - | tig0003362:16671-16690 | Msa1339730:intron | 40.0% |
| CTATAACACCATAAGGACCT+AGG | + | tig0003362:16691-16710 | None:intergenic | 40.0% | |
| !! | TAGCTTTGTCAATCATCACG+CGG | - | tig0003362:16863-16882 | Msa1339730:CDS | 40.0% |
| ! | TTGTTCTACAGGCAGTTTTG+TGG | - | tig0003362:16987-17006 | Msa1339730:intron | 40.0% |
| !! | GGCAGTTTTGTGGATTATGT+TGG | - | tig0003362:16997-17016 | Msa1339730:intron | 40.0% |
| TGGCAATATTCTCCCTCATA+AGG | - | tig0003362:17017-17036 | Msa1339730:intron | 40.0% | |
| ! | GCTGATTATCTCCTTGTTGT+AGG | - | tig0003362:17046-17065 | Msa1339730:intron | 40.0% |
| AACGATATTGGCAATGCTGA+GGG | + | tig0003362:17083-17102 | None:intergenic | 40.0% | |
| !! | GCAGAATTGGTTTAGGTTGA+TGG | - | tig0003362:17177-17196 | Msa1339730:intron | 40.0% |
| TCAGCAACTTTACACGAAGT+GGG | + | tig0003362:17372-17391 | None:intergenic | 40.0% | |
| GGTACATGCATTTAGTAGTC+AGG | + | tig0003362:17405-17424 | None:intergenic | 40.0% | |
| CTGCATTCTTGTATCTGTGA+CGG | - | tig0003362:17592-17611 | Msa1339730:intron | 40.0% | |
| TGCATTCTTGTATCTGTGAC+GGG | - | tig0003362:17593-17612 | Msa1339730:intron | 40.0% | |
| GGATCCACAACCATTTAGTT+TGG | - | tig0003362:17614-17633 | Msa1339730:intron | 40.0% | |
| TTGGGCGATTATCTCTTGAA+AGG | - | tig0003362:17723-17742 | Msa1339730:intron | 40.0% | |
| TTTATGGGGTTGGGAACTTT+GGG | - | tig0003362:17777-17796 | Msa1339730:CDS | 40.0% | |
| TAGGCTTAGAGAAACTCCTA+CGG | + | tig0003362:17863-17882 | None:intergenic | 40.0% | |
| CAGAAATCCTTCATATTGGG+AGG | + | tig0003362:17942-17961 | None:intergenic | 40.0% | |
| GGGCAGAAATCCTTCATATT+GGG | + | tig0003362:17945-17964 | None:intergenic | 40.0% | |
| TAAGGTAGATGAAAACCGAG+AGG | + | tig0003362:18097-18116 | None:intergenic | 40.0% | |
| !! | TTATTTTGCCGACATCAGAC+TGG | - | tig0003362:18215-18234 | Msa1339730:intron | 40.0% |
| TGCAAGTTTGATAGGTAGTC+AGG | + | tig0003362:18243-18262 | None:intergenic | 40.0% | |
| AAAGATCTATGTTCCACGAG+TGG | - | tig0003362:18408-18427 | Msa1339730:five_prime_UTR | 40.0% | |
| TTGTGAGGAATCAACGACGA+TGG | + | tig0003362:15636-15655 | None:intergenic | 45.0% | |
| !! | TGCTGCTCTTGATTTTTGGG+TGG | - | tig0003362:16042-16061 | Msa1339730:intron | 45.0% |
| TGGGTGGTTAAGAATGTCAG+TGG | - | tig0003362:16058-16077 | Msa1339730:intron | 45.0% | |
| ! | AAAAGTGGCGGAGATATCAC+CGG | + | tig0003362:16473-16492 | None:intergenic | 45.0% |
| TCAGCAGAGTTGAAAAGTGG+CGG | + | tig0003362:16485-16504 | None:intergenic | 45.0% | |
| GGTTCAGCAGAGTTGAAAAG+TGG | + | tig0003362:16488-16507 | None:intergenic | 45.0% | |
| ACCCCATTCTTATGCTAGTC+AGG | + | tig0003362:16509-16528 | None:intergenic | 45.0% | |
| ! | TTTCACTGCAGTCATTGGCT+AGG | - | tig0003362:16567-16586 | Msa1339730:intron | 45.0% |
| ! | CACTTTTGCCTAGGTCCTTA+TGG | - | tig0003362:16680-16699 | Msa1339730:intron | 45.0% |
| ! | AGCTTTGTCAATCATCACGC+GGG | - | tig0003362:16864-16883 | Msa1339730:CDS | 45.0% |
| ATTCTCCCTCATAAGGCTTC+AGG | - | tig0003362:17024-17043 | Msa1339730:intron | 45.0% | |
| ! | ATCAGCCTGAAGCCTTATGA+GGG | + | tig0003362:17032-17051 | None:intergenic | 45.0% |
| ! | AATCAGCCTGAAGCCTTATG+AGG | + | tig0003362:17033-17052 | None:intergenic | 45.0% |
| CAACGATATTGGCAATGCTG+AGG | + | tig0003362:17084-17103 | None:intergenic | 45.0% | |
| CTCAGCATTGCCAATATCGT+TGG | - | tig0003362:17082-17101 | Msa1339730:intron | 45.0% | |
| GTCAGCAACTTTACACGAAG+TGG | + | tig0003362:17373-17392 | None:intergenic | 45.0% | |
| TAGTACCCTGTTTATGGGGT+TGG | - | tig0003362:17767-17786 | Msa1339730:CDS | 45.0% | |
| AGTACCCTGTTTATGGGGTT+GGG | - | tig0003362:17768-17787 | Msa1339730:CDS | 45.0% | |
| AGTTCCCAACCCCATAAACA+GGG | + | tig0003362:17775-17794 | None:intergenic | 45.0% | |
| AAGTTCCCAACCCCATAAAC+AGG | + | tig0003362:17776-17795 | None:intergenic | 45.0% | |
| GTTTATGGGGTTGGGAACTT+TGG | - | tig0003362:17776-17795 | Msa1339730:CDS | 45.0% | |
| TCCTTCATATTGGGAGGGAA+GGG | + | tig0003362:17936-17955 | None:intergenic | 45.0% | |
| ATCCTTCATATTGGGAGGGA+AGG | + | tig0003362:17937-17956 | None:intergenic | 45.0% | |
| GGGGCAGAAATCCTTCATAT+TGG | + | tig0003362:17946-17965 | None:intergenic | 45.0% | |
| AATAAGCAGGTAACCACTCG+TGG | + | tig0003362:18424-18443 | None:intergenic | 45.0% | |
| GAGAAGGAACGAAGCTTGTG+AGG | + | tig0003362:15651-15670 | None:intergenic | 50.0% | |
| GTGTGAGCTTCAGAGAGAGA+AGG | + | tig0003362:15667-15686 | None:intergenic | 50.0% | |
| !! | CTCTCTCTGAAGCTCACACA+TGG | - | tig0003362:15668-15687 | Msa1339730:three_prime_UTR | 50.0% |
| GCTTTGTCAATCATCACGCG+GGG | - | tig0003362:16865-16884 | Msa1339730:CDS | 50.0% | |
| CCTTCATATTGGGAGGGAAG+GGG | + | tig0003362:17935-17954 | None:intergenic | 50.0% | |
| CCTCTCAGACAATTGCCTCT+CGG | - | tig0003362:18079-18098 | Msa1339730:intron | 50.0% | |
| GTCAGGATCCAGTCTGATGT+CGG | + | tig0003362:18226-18245 | None:intergenic | 50.0% | |
| CTCACACATGGATCCCAACC+AGG | - | tig0003362:15680-15699 | Msa1339730:three_prime_UTR | 55.0% | |
| TATTTGACAGGCTGCGGCGT+TGG | - | tig0003362:15952-15971 | Msa1339730:intron | 55.0% | |
| GGAGATATCACCGGCCCATT+TGG | + | tig0003362:16464-16483 | None:intergenic | 55.0% | |
| ! | CTGGTGGACCCTTTACCTTG+CGG | - | tig0003362:16616-16635 | Msa1339730:intron | 55.0% |
| CCCCTTCCCTCCCAATATGA+AGG | - | tig0003362:17932-17951 | Msa1339730:CDS | 55.0% | |
| GGATTTCTGCCCCCTCACAT+TGG | - | tig0003362:17953-17972 | Msa1339730:intron | 55.0% | |
| CCGAGAGGCAATTGTCTGAG+AGG | + | tig0003362:18082-18101 | None:intergenic | 55.0% | |
| TTGGGAGGGAAGGGGAGACA+GGG | + | tig0003362:17927-17946 | None:intergenic | 60.0% | |
| ATTGGGAGGGAAGGGGAGAC+AGG | + | tig0003362:17928-17947 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003362 | gene | 15461 | 18459 | 15461 | ID=Msa1339730;Name=Msa1339730 |
| tig0003362 | mRNA | 15461 | 18459 | 15461 | ID=Msa1339730-mRNA-1;Parent=Msa1339730;Name=Msa1339730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=226|1|1|1|1|1|6|319|183 |
| tig0003362 | exon | 15461 | 15868 | 15461 | ID=Msa1339730-mRNA-1:exon:2267;Parent=Msa1339730-mRNA-1 |
| tig0003362 | exon | 16796 | 16922 | 16796 | ID=Msa1339730-mRNA-1:exon:2266;Parent=Msa1339730-mRNA-1 |
| tig0003362 | exon | 17283 | 17342 | 17283 | ID=Msa1339730-mRNA-1:exon:2265;Parent=Msa1339730-mRNA-1 |
| tig0003362 | exon | 17755 | 17958 | 17755 | ID=Msa1339730-mRNA-1:exon:2264;Parent=Msa1339730-mRNA-1 |
| tig0003362 | exon | 18041 | 18097 | 18041 | ID=Msa1339730-mRNA-1:exon:2263;Parent=Msa1339730-mRNA-1 |
| tig0003362 | exon | 18219 | 18459 | 18219 | ID=Msa1339730-mRNA-1:exon:2262;Parent=Msa1339730-mRNA-1 |
| tig0003362 | five_prime_UTR | 18234 | 18459 | 18234 | ID=Msa1339730-mRNA-1:five_prime_utr;Parent=Msa1339730-mRNA-1 |
| tig0003362 | CDS | 18219 | 18233 | 18219 | ID=Msa1339730-mRNA-1:cds;Parent=Msa1339730-mRNA-1 |
| tig0003362 | CDS | 18041 | 18097 | 18041 | ID=Msa1339730-mRNA-1:cds;Parent=Msa1339730-mRNA-1 |
| tig0003362 | CDS | 17755 | 17958 | 17755 | ID=Msa1339730-mRNA-1:cds;Parent=Msa1339730-mRNA-1 |
| tig0003362 | CDS | 17283 | 17342 | 17283 | ID=Msa1339730-mRNA-1:cds;Parent=Msa1339730-mRNA-1 |
| tig0003362 | CDS | 16796 | 16922 | 16796 | ID=Msa1339730-mRNA-1:cds;Parent=Msa1339730-mRNA-1 |
| tig0003362 | CDS | 15780 | 15868 | 15780 | ID=Msa1339730-mRNA-1:cds;Parent=Msa1339730-mRNA-1 |
| tig0003362 | three_prime_UTR | 15461 | 15779 | 15461 | ID=Msa1339730-mRNA-1:three_prime_utr;Parent=Msa1339730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
