AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269470 MtrunA17_Chr7g0271761 99.482 193 1 0 1 193 1 193 3.72e-143 396
Msa0269470 MtrunA17_Chr2g0294701 93.264 193 13 0 1 193 1 193 1.15e-137 382
Msa0269470 MtrunA17_Chr4g0068171 89.637 193 20 0 1 193 1 193 9.08e-134 372
Msa0269470 MtrunA17_Chr4g0072861 33.523 176 105 1 18 193 15 178 5.00e-28 103
Msa0269470 MtrunA17_Chr5g0401761 32.203 177 104 2 18 192 15 177 1.92e-25 97.1
Msa0269470 MtrunA17_Chr6g0450081 31.073 177 106 2 18 192 15 177 3.77e-24 93.6
Msa0269470 MtrunA17_Chr5g0413451 31.073 177 106 2 18 192 15 177 4.02e-24 93.6
Msa0269470 MtrunA17_Chr5g0413441 31.073 177 106 2 18 192 15 177 4.02e-24 93.6
Msa0269470 MtrunA17_Chr1g0194261 31.073 177 106 2 18 192 15 177 4.20e-24 93.6
Msa0269470 MtrunA17_Chr7g0270301 31.073 177 106 2 18 192 15 177 4.20e-24 93.6
Msa0269470 MtrunA17_Chr1g0188111 35.088 171 99 2 19 189 16 174 1.14e-23 92.4
Msa0269470 MtrunA17_Chr4g0012371 37.778 135 77 2 22 152 2 133 2.50e-23 91.3
Msa0269470 MtrunA17_Chr2g0287721 37.584 149 81 3 15 151 7 155 2.76e-23 92.0
Msa0269470 MtrunA17_Chr8g0373271 32.164 171 105 1 22 192 18 177 2.77e-23 91.7
Msa0269470 MtrunA17_Chr5g0395631 29.319 191 115 3 3 193 8 178 3.24e-23 91.7
Msa0269470 MtrunA17_Chr4g0039591 29.319 191 115 3 3 193 8 178 1.12e-22 90.1
Msa0269470 MtrunA17_Chr5g0395641 34.848 132 82 2 20 148 17 147 1.66e-22 89.7
Msa0269470 MtrunA17_Chr5g0401071 36.601 153 95 2 1 152 1 152 1.91e-22 89.4
Msa0269470 MtrunA17_Chr5g0434561 36.296 135 85 1 18 151 17 151 4.66e-22 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269470 AT4G02080.1 94.819 193 10 0 1 193 1 193 5.46e-139 386
Msa0269470 AT3G62560.1 93.750 192 12 0 1 192 1 192 1.68e-136 379
Msa0269470 AT1G56330.1 91.667 192 16 0 1 192 1 192 1.05e-133 372
Msa0269470 AT1G09180.1 87.047 193 25 0 1 193 1 193 6.33e-127 355
Msa0269470 AT1G02620.1 87.387 111 14 0 83 193 12 122 9.18e-71 211
Msa0269470 AT2G24765.1 34.091 176 104 1 18 193 15 178 1.17e-27 103
Msa0269470 AT3G49870.1 38.562 153 92 2 1 152 1 152 4.07e-26 99.4
Msa0269470 AT5G67560.1 36.424 151 90 2 3 152 7 152 5.18e-25 96.3
Msa0269470 AT3G49870.2 40.310 129 76 1 25 152 5 133 1.59e-24 94.7
Msa0269470 AT2G47170.2 31.016 187 113 2 8 192 5 177 2.10e-24 94.7
Msa0269470 AT2G47170.1 31.016 187 113 2 8 192 5 177 2.10e-24 94.7
Msa0269470 AT2G47170.3 31.016 187 113 2 8 192 5 177 2.10e-24 94.7
Msa0269470 AT3G22950.1 34.483 174 102 2 19 192 16 177 2.28e-24 94.7
Msa0269470 AT3G22950.2 34.483 174 102 2 19 192 16 177 2.28e-24 94.7
Msa0269470 AT3G62290.3 31.016 187 113 2 8 192 5 177 2.96e-24 94.4
Msa0269470 AT3G62290.1 31.016 187 113 2 8 192 5 177 2.96e-24 94.4
Msa0269470 AT3G62290.2 31.016 187 113 2 8 192 5 177 2.96e-24 94.4
Msa0269470 AT1G10630.1 31.073 177 106 2 18 192 15 177 5.49e-24 93.6
Msa0269470 AT1G10630.2 31.073 177 106 2 18 192 15 177 5.49e-24 93.6
Msa0269470 AT5G14670.2 31.073 177 106 2 18 192 15 177 5.55e-24 93.6
Msa0269470 AT5G14670.3 31.073 177 106 2 18 192 15 177 5.55e-24 93.6
Msa0269470 AT1G23490.1 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT1G70490.2 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT1G70490.7 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT1G70490.4 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT1G70490.3 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT1G70490.1 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT1G70490.6 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT1G70490.5 31.073 177 106 2 18 192 15 177 5.67e-24 93.6
Msa0269470 AT5G14670.1 31.073 177 106 2 18 192 15 177 6.78e-24 93.6
Msa0269470 AT2G24765.2 40.708 113 67 0 18 130 15 127 6.98e-24 92.0
Msa0269470 AT2G18390.1 32.749 171 104 1 22 192 18 177 8.78e-24 93.2
Msa0269470 AT3G49860.1 37.143 140 87 1 15 153 6 145 1.22e-23 92.8
Msa0269470 AT5G37680.1 36.029 136 86 1 18 152 17 152 1.42e-22 90.1
Msa0269470 AT5G17060.2 28.796 191 116 3 3 193 8 178 3.64e-22 89.4
Msa0269470 AT5G17060.1 28.796 191 116 3 3 193 8 178 3.64e-22 89.4
Msa0269470 AT3G03120.1 32.877 146 90 1 3 148 8 145 9.95e-22 88.2
Msa0269470 AT2G15310.1 29.189 185 119 1 8 192 5 177 1.01e-21 88.2
Msa0269470 AT5G52210.1 36.242 149 77 3 15 148 7 152 3.44e-20 84.3
Msa0269470 AT5G52210.2 36.242 149 77 3 15 148 7 152 3.44e-20 84.3
Msa0269470 AT3G03120.2 32.061 131 81 1 3 133 8 130 5.33e-20 82.0
Msa0269470 AT5G37680.2 38.835 103 63 0 50 152 3 105 2.52e-18 77.8
Msa0269470 AT1G02430.2 31.206 141 89 4 18 151 15 154 1.39e-14 68.6
Msa0269470 AT1G02430.1 31.206 141 89 4 18 151 15 154 2.35e-14 68.6

Find 59 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTCATCACTGCTTTC+GGG 0.178483 2_3:+345811 Msa0269470:five_prime_UTR
CTCTCTCTCATCACTGCTTT+CGG 0.226129 2_3:+345810 Msa0269470:five_prime_UTR
GTGCAGTATTGTGAAGAAAA+TGG 0.290748 2_3:+348098 Msa0269470:CDS
TCATCACTGCTTTCGGGGTT+AGG 0.311328 2_3:+345817 Msa0269470:five_prime_UTR
TTCTAGCATCGCTTGGATTA+TGG 0.331495 2_3:+345949 Msa0269470:CDS
AGACGAATTGCGTTACCATT+TGG 0.332275 2_3:+347999 Msa0269470:CDS
GACGAATTGCGTTACCATTT+GGG 0.348316 2_3:+348000 Msa0269470:CDS
GAGGCTAAGATCTTATTCTT+AGG 0.351250 2_3:+345978 Msa0269470:CDS
TCTCCTTTCTGATGAATCAT+TGG 0.399431 2_3:+347918 Msa0269470:CDS
AATGTCCCTTTCCTTGTCCT+TGG 0.407599 2_3:+347943 Msa0269470:CDS
ATCAAAAGATGGTGATAAGT+AGG 0.414998 2_3:+345725 None:intergenic
ACTGCTTTCGGGGTTAGGTT+AGG 0.415385 2_3:+345822 Msa0269470:five_prime_UTR
ATCAGATTGCTCGTAGAGTC+TGG 0.419780 2_3:+346717 Msa0269470:CDS
CATCAGAAGAGTTGAGTATT+GGG 0.422638 2_3:+346660 Msa0269470:CDS
TCGTCTTCTGAGGCAGCATA+TGG 0.429799 2_3:-347982 None:intergenic
TTCTTTAGTAAGAGATGGCT+TGG 0.431594 2_3:+348167 Msa0269470:three_prime_UTR
GATACTGAGTCGGCTGATGC+TGG 0.450131 2_3:-346634 None:intergenic
GTTATGGTGATGGTTTCAAA+TGG 0.456424 2_3:+348121 Msa0269470:CDS
TTAAATGTTGGAAGTGTTGT+TGG 0.466848 2_3:+348221 Msa0269470:three_prime_UTR
TACGGGGTTCTAGCATCGCT+TGG 0.473883 2_3:+345942 Msa0269470:CDS
TTATGGTGATGGTTTCAAAT+GGG 0.483238 2_3:+348122 Msa0269470:CDS
ACATCAGAAGAGTTGAGTAT+TGG 0.487462 2_3:+346659 Msa0269470:CDS
GGCTTGAGCAACTTCACCAC+TGG 0.494395 2_3:+348021 Msa0269470:CDS
TGCAGTATTGTGAAGAAAAT+GGG 0.501905 2_3:+348099 Msa0269470:CDS
TGAAGTTGCTCAAGCCCAAA+TGG 0.508916 2_3:-348014 None:intergenic
TAGAGTTCTTTAGTAAGAGA+TGG 0.510913 2_3:+348162 Msa0269470:exon
TGTTTCCAAGGACAAGGAAA+GGG 0.516162 2_3:-347948 None:intergenic
TCAAAAGATGGTGATAAGTA+GGG 0.517128 2_3:+345726 None:intergenic
GGTAGATGCAGTGGTCTACT+TGG 0.525431 2_3:+347843 Msa0269470:intron
CTTCACCACTGGCAAGGGTA+AGG 0.533342 2_3:+348032 Msa0269470:CDS
TTGTTTCCAAGGACAAGGAA+AGG 0.535849 2_3:-347949 None:intergenic
AGTGATGAGAGAGAGTAGGT+TGG 0.539435 2_3:-345802 None:intergenic
AAGAAAATGGGTTATGGTGA+TGG 0.542914 2_3:+348111 Msa0269470:CDS
TTGCCAATGATTCATCAGAA+AGG 0.547484 2_3:-347921 None:intergenic
GAGACGAATTTCACGTTGTG+AGG 0.551573 2_3:-345855 None:intergenic
TTCTTAGGTCTCGACAACGC+CGG 0.556039 2_3:+345993 Msa0269470:CDS
GAGCAACTTCACCACTGGCA+AGG 0.556603 2_3:+348026 Msa0269470:CDS
AGCAACTTCACCACTGGCAA+GGG 0.561923 2_3:+348027 Msa0269470:CDS
ATTGTGAAGAAAATGGGTTA+TGG 0.564263 2_3:+348105 Msa0269470:CDS
CTGGAAAGATTACTATGCCC+AGG 0.565879 2_3:+346736 Msa0269470:CDS
CTTGGTTGATGCTTATGACA+AGG 0.569852 2_3:+347861 Msa0269470:CDS
AGACTCAAATGTCCGACCCA+TGG 0.577020 2_3:+348065 Msa0269470:CDS
CTCTCTCATCACTGCTTTCG+GGG 0.582470 2_3:+345812 Msa0269470:five_prime_UTR
TTTATTTCTATAAAATGACT+GGG 0.586086 2_3:+348283 Msa0269470:three_prime_UTR
TTGTTTCTGTACTTAAATGT+TGG 0.588028 2_3:+348209 Msa0269470:three_prime_UTR
GCTTGGATTATGGCAGAAAG+AGG 0.588367 2_3:+345959 Msa0269470:CDS
ATACTCAACTCTTCTGATGT+CGG 0.590024 2_3:-346656 None:intergenic
TCTGATGTCGGATACTGAGT+CGG 0.590760 2_3:-346644 None:intergenic
ACTGCACATGAATACCTCCA+TGG 0.596081 2_3:-348082 None:intergenic
CTGCACATGAATACCTCCAT+GGG 0.601771 2_3:-348081 None:intergenic
GTCTTTGAGCATATGAAGCA+AGG 0.603316 2_3:-346024 None:intergenic
GCTTCATATGCTCAAAGACG+AGG 0.605146 2_3:+346028 Msa0269470:CDS
AAGCAGTGATGAGAGAGAGT+AGG 0.624754 2_3:-345806 None:intergenic
GTAACGCAATTCGTCTTCTG+AGG 0.630635 2_3:-347992 None:intergenic
ATTTACCTTACCCTTGCCAG+TGG 0.635981 2_3:-348037 None:intergenic
TGCAATGCAGGTAGATGCAG+TGG 0.654691 2_3:+347834 Msa0269470:intron
CTCAAATGTCCGACCCATGG+AGG 0.662910 2_3:+348068 Msa0269470:CDS
ACATGAATACCTCCATGGGT+CGG 0.682919 2_3:-348077 None:intergenic
TTTGAGCATATGAAGCAAGG+TGG 0.690241 2_3:-346021 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATGATAATAATAAGT+GGG - chr2_3:346069-346088 None:intergenic 10.0%
!! ATAATAATGATAATAATAAG+TGG - chr2_3:346070-346089 None:intergenic 10.0%
!!! TATTTTTCATTTCTAAAATA+CGG + chr2_3:348336-348355 Msa0269470:three_prime_UTR 10.0%
!! ATATCTTAATCATGAAAATT+TGG + chr2_3:346816-346835 Msa0269470:intron 15.0%
!!! TTTTATTTCTATAAAATGAC+TGG + chr2_3:348282-348301 Msa0269470:three_prime_UTR 15.0%
!!! TTTATTTCTATAAAATGACT+GGG + chr2_3:348283-348302 Msa0269470:three_prime_UTR 15.0%
!!! ATAGAATATTTTGTAGTCAA+AGG + chr2_3:346160-346179 Msa0269470:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG + chr2_3:346689-346708 Msa0269470:CDS 20.0%
!! AGACATAATATAATATAGGA+AGG - chr2_3:346853-346872 None:intergenic 20.0%
!! TCCTATATTATATTATGTCT+TGG + chr2_3:346853-346872 Msa0269470:intron 20.0%
!! TCCAAGACATAATATAATAT+AGG - chr2_3:346857-346876 None:intergenic 20.0%
!! TCAAAGTCAAATTAATTCAA+CGG - chr2_3:347414-347433 None:intergenic 20.0%
!! AGCAATAGTATAAAATGAAA+AGG - chr2_3:347685-347704 None:intergenic 20.0%
!! TATTACCGATATTGTTCTTT+TGG + chr2_3:346087-346106 Msa0269470:intron 25.0%
!!! TTACTGTTGATAATGTTTTG+TGG + chr2_3:346134-346153 Msa0269470:intron 25.0%
! TAAACATATCTCAACAAAAG+TGG - chr2_3:346370-346389 None:intergenic 25.0%
!! GTTTCTTTTATGATGAGAAT+TGG + chr2_3:346595-346614 Msa0269470:intron 25.0%
!!! CAAGTTTAAAGCTTTTGATT+TGG + chr2_3:346688-346707 Msa0269470:CDS 25.0%
!!! AGTTTAAAGCTTTTGATTTG+GGG + chr2_3:346690-346709 Msa0269470:CDS 25.0%
! ATTATATTATGTCTTGGACT+TGG + chr2_3:346859-346878 Msa0269470:intron 25.0%
!!! GTAACTTTATTTTGTTTGTG+TGG + chr2_3:346888-346907 Msa0269470:intron 25.0%
! TCTTATGTTCTTTACCATAA+TGG + chr2_3:347020-347039 Msa0269470:intron 25.0%
! ATACAATGGATAGAATAGAA+GGG - chr2_3:347343-347362 None:intergenic 25.0%
! TATACAATGGATAGAATAGA+AGG - chr2_3:347344-347363 None:intergenic 25.0%
! TTATAAGCTACTGTATACAA+TGG - chr2_3:347357-347376 None:intergenic 25.0%
! AGATTAATACATACTTGCTT+TGG + chr2_3:347493-347512 Msa0269470:intron 25.0%
!!! GAATATCAATTTTGTTTCCA+AGG - chr2_3:347963-347982 None:intergenic 25.0%
!!! TTGTTTCTGTACTTAAATGT+TGG + chr2_3:348209-348228 Msa0269470:three_prime_UTR 25.0%
! ATCGTAAAAGACGATGTTTT+TGG + chr2_3:345908-345927 Msa0269470:exon 30.0%
!!! TTTTTGGTGGATTGGTTTTA+CGG + chr2_3:345924-345943 Msa0269470:CDS 30.0%
CCATTCCAAAAGAACAATAT+CGG - chr2_3:346095-346114 None:intergenic 30.0%
!!! ATTGTTCTTTTGGAATGGAA+CGG + chr2_3:346097-346116 Msa0269470:intron 30.0%
TTTACACTTATTACTGTCAG+CGG + chr2_3:346194-346213 Msa0269470:intron 30.0%
TGAGATATGTTTATCCAAAC+AGG + chr2_3:346377-346396 Msa0269470:intron 30.0%
AACACACCAAAACAAGTTAA+GGG - chr2_3:346403-346422 None:intergenic 30.0%
AGAAACATTATACCAAGACT+CGG - chr2_3:346581-346600 None:intergenic 30.0%
!!! GTTTAAAGCTTTTGATTTGG+GGG + chr2_3:346691-346710 Msa0269470:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+GGG + chr2_3:346692-346711 Msa0269470:CDS 30.0%
!! ACAAAAAAGTATTGAAGGCA+TGG - chr2_3:346773-346792 None:intergenic 30.0%
!!! ATGCCTTCAATACTTTTTTG+TGG + chr2_3:346772-346791 Msa0269470:intron 30.0%
!! TAGCCACAAAAAAGTATTGA+AGG - chr2_3:346778-346797 None:intergenic 30.0%
TATAGAACTGCCTAAGATAT+TGG + chr2_3:346954-346973 Msa0269470:intron 30.0%
AGATTCTAAGCCAATATCTT+AGG - chr2_3:346967-346986 None:intergenic 30.0%
AAATGACTGTGTTTCCATTA+TGG - chr2_3:347037-347056 None:intergenic 30.0%
TGTAAGAGAAACCATTAGAA+AGG + chr2_3:347113-347132 Msa0269470:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr2_3:347122-347141 Msa0269470:intron 30.0%
! CAATGAGTTGGATTCAAATA+TGG + chr2_3:347146-347165 Msa0269470:intron 30.0%
TGGTTTATGATAGAACACTA+TGG + chr2_3:347166-347185 Msa0269470:intron 30.0%
TTAATACATACTTGCTTTGG+TGG + chr2_3:347496-347515 Msa0269470:intron 30.0%
AAAATACTACTTCATGTTCG+AGG - chr2_3:347541-347560 None:intergenic 30.0%
! AAACCATCAAGTTTGTTTCT+CGG - chr2_3:347598-347617 None:intergenic 30.0%
TCTCAGTTAAATATTGAGCA+GGG - chr2_3:347634-347653 None:intergenic 30.0%
TTCTCAGTTAAATATTGAGC+AGG - chr2_3:347635-347654 None:intergenic 30.0%
AGTACCTTATAAGACATTTC+TGG + chr2_3:347708-347727 Msa0269470:intron 30.0%
!! AAGATTTGCTGAGTCAAAAA+AGG + chr2_3:347885-347904 Msa0269470:CDS 30.0%
TGCAGTATTGTGAAGAAAAT+GGG + chr2_3:348099-348118 Msa0269470:CDS 30.0%
!! ATTGTGAAGAAAATGGGTTA+TGG + chr2_3:348105-348124 Msa0269470:CDS 30.0%
!! TTATGGTGATGGTTTCAAAT+GGG + chr2_3:348122-348141 Msa0269470:CDS 30.0%
TAGAGTTCTTTAGTAAGAGA+TGG + chr2_3:348162-348181 Msa0269470:exon 30.0%
!! TTAAATGTTGGAAGTGTTGT+TGG + chr2_3:348221-348240 Msa0269470:three_prime_UTR 30.0%
CCAAAAATTAACTGAACTGT+AGG - chr2_3:348311-348330 None:intergenic 30.0%
! CCTACAGTTCAGTTAATTTT+TGG + chr2_3:348308-348327 Msa0269470:three_prime_UTR 30.0%
!!! GTAAAAGACGATGTTTTTGG+TGG + chr2_3:345911-345930 Msa0269470:exon 35.0%
!!! TTTTGGTGGATTGGTTTTAC+GGG + chr2_3:345925-345944 Msa0269470:CDS 35.0%
GAGGCTAAGATCTTATTCTT+AGG + chr2_3:345978-345997 Msa0269470:CDS 35.0%
!! CCGATATTGTTCTTTTGGAA+TGG + chr2_3:346092-346111 Msa0269470:intron 35.0%
CAACACACCAAAACAAGTTA+AGG - chr2_3:346404-346423 None:intergenic 35.0%
AGAAACCAGAAAAGATTACG+TGG - chr2_3:346508-346527 None:intergenic 35.0%
ATATCTTTATCTCCGAGTCT+TGG + chr2_3:346566-346585 Msa0269470:intron 35.0%
ATACTCAACTCTTCTGATGT+CGG - chr2_3:346659-346678 None:intergenic 35.0%
ACATCAGAAGAGTTGAGTAT+TGG + chr2_3:346659-346678 Msa0269470:CDS 35.0%
CATCAGAAGAGTTGAGTATT+GGG + chr2_3:346660-346679 Msa0269470:CDS 35.0%
ATGAAAATTTGGATGCCAGT+AGG + chr2_3:346827-346846 Msa0269470:intron 35.0%
TATAATATAGGAAGGCCTAC+TGG - chr2_3:346845-346864 None:intergenic 35.0%
!!! CTTTATTTTGTTTGTGTGGC+TGG + chr2_3:346892-346911 Msa0269470:intron 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr2_3:347127-347146 None:intergenic 35.0%
! TTGAGTTTGCTTGTTCAACT+AGG + chr2_3:347430-347449 Msa0269470:intron 35.0%
TAATCAGATGTGCACATTCT+AGG + chr2_3:347453-347472 Msa0269470:intron 35.0%
TAACCGAGAAACAAACTTGA+TGG + chr2_3:347592-347611 Msa0269470:intron 35.0%
! GAGAAACAAACTTGATGGTT+TGG + chr2_3:347597-347616 Msa0269470:intron 35.0%
! AAACTTGATGGTTTGGACTT+TGG + chr2_3:347604-347623 Msa0269470:intron 35.0%
AGAGCCAGAAATGTCTTATA+AGG - chr2_3:347715-347734 None:intergenic 35.0%
TCTCCTTTCTGATGAATCAT+TGG + chr2_3:347918-347937 Msa0269470:CDS 35.0%
TTGCCAATGATTCATCAGAA+AGG - chr2_3:347924-347943 None:intergenic 35.0%
!! CAATTTTGTTTCCAAGGACA+AGG - chr2_3:347957-347976 None:intergenic 35.0%
GTGCAGTATTGTGAAGAAAA+TGG + chr2_3:348098-348117 Msa0269470:CDS 35.0%
!! AAGAAAATGGGTTATGGTGA+TGG + chr2_3:348111-348130 Msa0269470:CDS 35.0%
!! GTTATGGTGATGGTTTCAAA+TGG + chr2_3:348121-348140 Msa0269470:CDS 35.0%
TTCTTTAGTAAGAGATGGCT+TGG + chr2_3:348167-348186 Msa0269470:three_prime_UTR 35.0%
!!! AGACGATGTTTTTGGTGGAT+TGG + chr2_3:345916-345935 Msa0269470:exon 40.0%
!!! TTTGGTGGATTGGTTTTACG+GGG + chr2_3:345926-345945 Msa0269470:CDS 40.0%
TTCTAGCATCGCTTGGATTA+TGG + chr2_3:345949-345968 Msa0269470:CDS 40.0%
TTTGAGCATATGAAGCAAGG+TGG - chr2_3:346024-346043 None:intergenic 40.0%
GTCTTTGAGCATATGAAGCA+AGG - chr2_3:346027-346046 None:intergenic 40.0%
AAACAAGTTAAGGGCCTGTT+TGG - chr2_3:346394-346413 None:intergenic 40.0%
!!! AACAGGCCCTTAACTTGTTT+TGG + chr2_3:346394-346413 Msa0269470:intron 40.0%
!!! TTGTTTTGGTGTGTTGCTCT+TGG + chr2_3:346408-346427 Msa0269470:intron 40.0%
! TTCGACCACGTAATCTTTTC+TGG + chr2_3:346500-346519 Msa0269470:intron 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr2_3:347134-347153 Msa0269470:intron 40.0%
AACTGAGAAACATTACGTGC+TGG + chr2_3:347772-347791 Msa0269470:intron 40.0%
ATCATGAGTTGTTGCAATGC+AGG + chr2_3:347822-347841 Msa0269470:intron 40.0%
! CTTGGTTGATGCTTATGACA+AGG + chr2_3:347861-347880 Msa0269470:CDS 40.0%
TGCTGAGTCAAAAAAGGAGT+TGG + chr2_3:347891-347910 Msa0269470:CDS 40.0%
TGTTTCCAAGGACAAGGAAA+GGG - chr2_3:347951-347970 None:intergenic 40.0%
TTGTTTCCAAGGACAAGGAA+AGG - chr2_3:347952-347971 None:intergenic 40.0%
AGACGAATTGCGTTACCATT+TGG + chr2_3:347999-348018 Msa0269470:CDS 40.0%
GACGAATTGCGTTACCATTT+GGG + chr2_3:348000-348019 Msa0269470:CDS 40.0%
AGTGATGAGAGAGAGTAGGT+TGG - chr2_3:345805-345824 None:intergenic 45.0%
AAGCAGTGATGAGAGAGAGT+AGG - chr2_3:345809-345828 None:intergenic 45.0%
CTCTCTCTCATCACTGCTTT+CGG + chr2_3:345810-345829 Msa0269470:five_prime_UTR 45.0%
TCTCTCTCATCACTGCTTTC+GGG + chr2_3:345811-345830 Msa0269470:five_prime_UTR 45.0%
GAGACGAATTTCACGTTGTG+AGG - chr2_3:345858-345877 None:intergenic 45.0%
GCTTGGATTATGGCAGAAAG+AGG + chr2_3:345959-345978 Msa0269470:CDS 45.0%
!! ATGAAGCAAGGTGGTTTTGC+CGG - chr2_3:346015-346034 None:intergenic 45.0%
GCTTCATATGCTCAAAGACG+AGG + chr2_3:346028-346047 Msa0269470:CDS 45.0%
! TACTGTCAGCGGAGTTTTCT+AGG + chr2_3:346205-346224 Msa0269470:intron 45.0%
TCTGATGTCGGATACTGAGT+CGG - chr2_3:346647-346666 None:intergenic 45.0%
ATCAGATTGCTCGTAGAGTC+TGG + chr2_3:346717-346736 Msa0269470:CDS 45.0%
CTGGAAAGATTACTATGCCC+AGG + chr2_3:346736-346755 Msa0269470:CDS 45.0%
GCATGGAAAAAGAGAGACCT+GGG - chr2_3:346756-346775 None:intergenic 45.0%
!! TTTTGTTTGTGTGGCTGGAC+TGG + chr2_3:346897-346916 Msa0269470:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr2_3:347215-347234 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr2_3:347216-347235 None:intergenic 45.0%
CAACGGCAGAAATGATTCAG+CGG - chr2_3:347397-347416 None:intergenic 45.0%
AATGTCCCTTTCCTTGTCCT+TGG + chr2_3:347943-347962 Msa0269470:CDS 45.0%
GTAACGCAATTCGTCTTCTG+AGG - chr2_3:347995-348014 None:intergenic 45.0%
TGAAGTTGCTCAAGCCCAAA+TGG - chr2_3:348017-348036 None:intergenic 45.0%
ATTTACCTTACCCTTGCCAG+TGG - chr2_3:348040-348059 None:intergenic 45.0%
ACATGAATACCTCCATGGGT+CGG - chr2_3:348080-348099 None:intergenic 45.0%
CTGCACATGAATACCTCCAT+GGG - chr2_3:348084-348103 None:intergenic 45.0%
ACTGCACATGAATACCTCCA+TGG - chr2_3:348085-348104 None:intergenic 45.0%
CTCTCTCATCACTGCTTTCG+GGG + chr2_3:345812-345831 Msa0269470:five_prime_UTR 50.0%
TCATCACTGCTTTCGGGGTT+AGG + chr2_3:345817-345836 Msa0269470:five_prime_UTR 50.0%
ACTGCTTTCGGGGTTAGGTT+AGG + chr2_3:345822-345841 Msa0269470:five_prime_UTR 50.0%
TTCTTAGGTCTCGACAACGC+CGG + chr2_3:345993-346012 Msa0269470:CDS 50.0%
GGCATGGAAAAAGAGAGACC+TGG - chr2_3:346757-346776 None:intergenic 50.0%
ACTAAGTGGGGTCAGGTACA+TGG - chr2_3:347203-347222 None:intergenic 50.0%
ATGTACCTGACCCCACTTAG+TGG + chr2_3:347202-347221 Msa0269470:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG + chr2_3:347203-347222 Msa0269470:intron 50.0%
TTATCCCACTAAGTGGGGTC+AGG - chr2_3:347210-347229 None:intergenic 50.0%
TGACCCCACTTAGTGGGATA+AGG + chr2_3:347209-347228 Msa0269470:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr2_3:347217-347236 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr2_3:347214-347233 Msa0269470:intron 50.0%
TGCAATGCAGGTAGATGCAG+TGG + chr2_3:347834-347853 Msa0269470:intron 50.0%
GGTAGATGCAGTGGTCTACT+TGG + chr2_3:347843-347862 Msa0269470:intron 50.0%
!! TCGTCTTCTGAGGCAGCATA+TGG - chr2_3:347985-348004 None:intergenic 50.0%
AGCAACTTCACCACTGGCAA+GGG + chr2_3:348027-348046 Msa0269470:CDS 50.0%
AGACTCAAATGTCCGACCCA+TGG + chr2_3:348065-348084 Msa0269470:CDS 50.0%
! TACGGGGTTCTAGCATCGCT+TGG + chr2_3:345942-345961 Msa0269470:CDS 55.0%
GATACTGAGTCGGCTGATGC+TGG - chr2_3:346637-346656 None:intergenic 55.0%
GGCTTGAGCAACTTCACCAC+TGG + chr2_3:348021-348040 Msa0269470:CDS 55.0%
GAGCAACTTCACCACTGGCA+AGG + chr2_3:348026-348045 Msa0269470:CDS 55.0%
CTTCACCACTGGCAAGGGTA+AGG + chr2_3:348032-348051 Msa0269470:CDS 55.0%
CTCAAATGTCCGACCCATGG+AGG + chr2_3:348068-348087 Msa0269470:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 345736 348370 345736 ID=Msa0269470;Name=Msa0269470
chr2_3 mRNA 345736 348370 345736 ID=Msa0269470-mRNA-1;Parent=Msa0269470;Name=Msa0269470-mRNA-1;_AED=0.08;_eAED=0.08;_QI=185|1|1|1|1|1|3|206|193
chr2_3 exon 345736 346049 345736 ID=Msa0269470-mRNA-1:exon:115;Parent=Msa0269470-mRNA-1
chr2_3 exon 346626 346757 346626 ID=Msa0269470-mRNA-1:exon:116;Parent=Msa0269470-mRNA-1
chr2_3 exon 347844 348370 347844 ID=Msa0269470-mRNA-1:exon:117;Parent=Msa0269470-mRNA-1
chr2_3 five_prime_UTR 345736 345920 345736 ID=Msa0269470-mRNA-1:five_prime_utr;Parent=Msa0269470-mRNA-1
chr2_3 CDS 345921 346049 345921 ID=Msa0269470-mRNA-1:cds;Parent=Msa0269470-mRNA-1
chr2_3 CDS 346626 346757 346626 ID=Msa0269470-mRNA-1:cds;Parent=Msa0269470-mRNA-1
chr2_3 CDS 347844 348164 347844 ID=Msa0269470-mRNA-1:cds;Parent=Msa0269470-mRNA-1
chr2_3 three_prime_UTR 348165 348370 348165 ID=Msa0269470-mRNA-1:three_prime_utr;Parent=Msa0269470-mRNA-1
Gene Sequence

>Msa0269470

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>Msa0269470

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK*