AlfalfaGEDB | Msa1350340

M. sativa cultivar zhongmu-4 / Msa1350340

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350340	XP_003597983.2	93.261	460	26	2	1	455	28	487	0.0	870

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350340	sp\|Q9M8M3\|PP136_ARATH	56.193	436	175	5	15	448	19	440	4.62e-178	508

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350340	G7IMC4	93.261	460	26	2	1	455	28	487	0.0	870

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022750	Msa1350340	-0.805372	1.378060e-49	-8.615850e-47
Msa0027390	Msa1350340	0.809825	1.562440e-50	-8.615850e-47
Msa0048000	Msa1350340	0.803872	2.833477e-49	-8.615850e-47
Msa0078060	Msa1350340	0.805170	1.518735e-49	-8.615850e-47
Msa0123300	Msa1350340	0.808682	2.746323e-50	-8.615850e-47
Msa0142480	Msa1350340	0.801277	9.712019e-49	-8.615850e-47
Msa0144790	Msa1350340	0.813196	2.892961e-51	-8.615850e-47
Msa0165300	Msa1350340	0.809068	2.271416e-50	-8.615850e-47
Msa0167850	Msa1350340	0.814200	1.739069e-51	-8.615850e-47
Msa0227230	Msa1350340	0.817984	2.483326e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350340	MtrunA17_Chr2g0333551	93.261	460	26	2	1	455	28	487	0.0	870
Msa1350340	MtrunA17_Chr7g0252871	33.000	400	249	4	47	442	134	518	2.96e-68	228
Msa1350340	MtrunA17_Chr1g0208371	29.867	452	277	11	9	437	37	471	1.30e-55	192
Msa1350340	MtrunA17_Chr1g0208371	24.400	250	182	4	196	440	121	368	1.27e-13	72.8
Msa1350340	MtrunA17_Chr4g0020821	29.803	406	265	8	43	442	264	655	7.23e-53	191
Msa1350340	MtrunA17_Chr3g0125131	29.177	401	260	7	42	437	61	442	4.14e-52	182
Msa1350340	MtrunA17_Chr3g0125131	22.041	245	158	3	196	440	130	341	1.19e-13	72.8
Msa1350340	MtrunA17_Chr3g0079211	30.808	396	242	9	59	438	76	455	1.79e-47	170
Msa1350340	MtrunA17_Chr2g0308441	27.361	413	264	7	47	454	100	481	2.18e-47	170
Msa1350340	MtrunA17_Chr8g0369501	27.363	402	269	6	61	454	131	517	1.07e-45	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350340	AT1G80550.1	56.193	436	175	5	15	448	19	440	4.70e-179	508
Msa1350340	AT5G15010.1	33.915	401	245	5	42	437	123	508	4.10e-64	217
Msa1350340	AT3G15200.1	29.923	391	255	5	56	443	121	495	6.22e-51	181
Msa1350340	AT1G74900.1	27.861	402	250	9	44	434	56	428	2.41e-45	164
Msa1350340	AT1G74900.1	25.726	241	175	2	200	437	94	333	1.50e-16	82.0
Msa1350340	AT1G74900.1	26.923	260	176	7	188	437	43	298	2.59e-16	81.3
Msa1350340	AT1G77360.2	27.182	401	268	8	42	437	62	443	2.29e-43	159
Msa1350340	AT1G71060.1	26.196	397	276	4	42	437	92	472	3.49e-43	159
Msa1350340	AT1G77360.1	27.182	401	268	8	42	437	98	479	4.66e-43	159
Msa1350340	AT1G52640.1	29.058	382	252	7	61	437	85	452	9.96e-41	152

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Find 113 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGCAATAATGCGT+TGG	0.612239	tig0011306:-21771	None:intergenic
AAAAGATTCAAACTTTAACT+TGG	0.465772	tig0011306:-21234	Msa1350340:CDS
AAACAACTCAATAATAAACT+TGG	0.459424	tig0011306:+20709	None:intergenic
AACAACTCAATAATAAACTT+GGG	0.549794	tig0011306:+20710	None:intergenic
AACAATTTCACAGCTTTCCA+TGG	0.487320	tig0011306:+21016	None:intergenic
AACACCTTGAGAAACACCAA+TGG	0.683963	tig0011306:+20931	None:intergenic
AACATTGTGATTAGAGCCAT+TGG	0.453485	tig0011306:-20947	Msa1350340:CDS
AACCTTGTACTCGACATTCT+TGG	0.328917	tig0011306:-21514	Msa1350340:CDS
AACGGTTGTGGGGTCCACGA+AGG	0.660250	tig0011306:+21639	None:intergenic
AACTCTGAAGGTGGTGTGAT+TGG	0.384447	tig0011306:+21423	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAATTGAATTAGGGTTA+GGG	+	tig0011306:20513-20532	None:intergenic	30.0%
AAGGAAATTGAATTAGGGTT+AGG	+	tig0011306:20514-20533	None:intergenic	30.0%
GAAAGCTGTGAAATTGTTTA+AGG	-	tig0011306:21158-21177	Msa1350340:CDS	30.0%
TTTAAGGAGATGAAGAGAAA+AGG	-	tig0011306:21174-21193	Msa1350340:CDS	30.0%
TTTCGTGAAATGAAGGATTT+AGG	-	tig0011306:21279-21298	Msa1350340:CDS	30.0%
CATTGATATGAAACAGCATT+AGG	+	tig0011306:21417-21436	None:intergenic	30.0%
AGGAAATTGAATTAGGGTTA+GGG	+	tig0011306:20513-20532	None:intergenic	30.0%
AAGGAAATTGAATTAGGGTT+AGG	+	tig0011306:20514-20533	None:intergenic	30.0%
GAAAGCTGTGAAATTGTTTA+AGG	-	tig0011306:21158-21177	Msa1350340:CDS	30.0%
TTTAAGGAGATGAAGAGAAA+AGG	-	tig0011306:21174-21193	Msa1350340:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0011306	gene	20412	21779	20412	ID=Msa1350340;Name=Msa1350340
tig0011306	mRNA	20412	21779	20412	ID=Msa1350340-mRNA-1;Parent=Msa1350340;Name=Msa1350340-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|455
tig0011306	exon	20412	21779	20412	ID=Msa1350340-mRNA-1:exon:7347;Parent=Msa1350340-mRNA-1
tig0011306	CDS	20412	21779	20412	ID=Msa1350340-mRNA-1:cds;Parent=Msa1350340-mRNA-1

Gene Sequence

>Msa1350340

ATGCGTTGGCCAATTCTCCTTTCAACTCGCCATCTCCGATTCCGTTTTCTCCCTTTCCAAACCCTTTCCTCATATCACACCTTCACCACACAACAAAACCCTAACCCTAATTCAATTTCCTTCGTGGACCCCACAACCGTTCGTGCAACCCTAACCTCCTTCAACAACGATTACAAACGCGCTTTAGAATTCTTCAATTGGGTCGAAACCGAATATAAATTCCAACACTCCACTGAAACATACAACCTTGTACTCGACATTCTTGGTAAATTTTTTGAATTCCAACAATGTTGGAACTTGATTCATCGTATGCGTCAAAACCCTCATTCTTTGCCCAATCACACCACCTTCAGAGTTATGTTCAAACGTTACGTATCCGCTCATTGTGTCGACGACGCTGTTAGCACTTTTCAACGTCTCAATGAGTTCAATTTGAAAGATGAAACTTCCTTTTCAAATCTCATTGATGCGCTTTGTGAGTATAAACATGTTCTTGAAGCTCAGGATTTGGTTTTTGGGGACAAAAAGATTCAAACTTTAACTTGGAACGTTGATGGGGTTGATGGGTTTGTTGTGAGTTGTAAAAATACTAAAATTTTTAACATTGTGCTTCGTGGGTGGTATAAATTGGGGTGGTGGAGTAAATGTTGGGAGTTTTGGGATGAAATGGATAGAAAAGGGGTTGAAAAGGATTTGCATTCGTATTCAATTTATATGGATATTTTGTCGAAAGGTGGGAAGCCATGGAAAGCTGTGAAATTGTTTAAGGAGATGAAGAGAAAAGGTATTCAATTAGATGTTGTTGTTTATAACATTGTGATTAGAGCCATTGGTGTTTCTCAAGGTGTTGATTTTTCGATTAGGTTGTTTCGTGAAATGAAGGATTTAGGTTTGAATCCTACTGTTGTTACTTATAATACAATTATAAGGCTTTTGTGTGATAATTATAGATATAAGGAAGCTCTTACGTTGCTAAGAACCATGCGTCGTGATGGTTGTTCTCCTAATGCTGTTTCATATCAATGCTTTTTCGCTTGTCTTGAGAAACCCAAGTTTATTATTGAGTTGTTTGATGGTATGATTGAGAGTGGGGTTCGTCCTACTATGGATACATATGTTATGCTTCTCAAGAAGTTTGCGAGGTGGGGGTTTCTTCGATTGGTTTTTTTAGTTTGGAATAGAATGGAAGAACTTGGATGTAGTCCTGATGCGTCTGCTTACAATGCTTTGATTGATGCTCTTGTGGAGAAGGGGTTGATAGATATGGCTAGGAAGTATGATGAAGAGATGTTGGCTAAAGGACTTTCGCCTAAGCCGAGGAAAGAGTTGGGGACAAAGGTTCTGGGAGGAGAATCTGTCGAGGAATAG

Protein sequence

>Msa1350340

MRWPILLSTRHLRFRFLPFQTLSSYHTFTTQQNPNPNSISFVDPTTVRATLTSFNNDYKRALEFFNWVETEYKFQHSTETYNLVLDILGKFFEFQQCWNLIHRMRQNPHSLPNHTTFRVMFKRYVSAHCVDDAVSTFQRLNEFNLKDETSFSNLIDALCEYKHVLEAQDLVFGDKKIQTLTWNVDGVDGFVVSCKNTKIFNIVLRGWYKLGWWSKCWEFWDEMDRKGVEKDLHSYSIYMDILSKGGKPWKAVKLFKEMKRKGIQLDVVVYNIVIRAIGVSQGVDFSIRLFREMKDLGLNPTVVTYNTIIRLLCDNYRYKEALTLLRTMRRDGCSPNAVSYQCFFACLEKPKFIIELFDGMIESGVRPTMDTYVMLLKKFARWGFLRLVFLVWNRMEELGCSPDASAYNALIDALVEKGLIDMARKYDEEMLAKGLSPKPRKELGTKVLGGESVEE*