AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176360 MtrunA17_Chr8g0346531 100.000 157 0 0 1 157 1 157 1.18e-115 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176360 AT1G01230.1 84.713 157 24 0 1 157 1 157 6.02e-100 284
Msa1176360 AT5G42000.1 84.416 154 24 0 4 157 1 154 4.51e-99 282
Msa1176360 AT5G42000.2 85.321 109 16 0 4 112 1 109 1.05e-68 203

Find 57 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCAAATTATGCAAAATT+TGG 0.095930 8_1:-8338277 None:intergenic
CTTTCTTCCTTCTCTTGTTC+TGG 0.172031 8_1:+8343816 Msa1176360:three_prime_UTR
CTTCTAAGCTTCTTCTTCTA+AGG 0.206195 8_1:+8343932 Msa1176360:three_prime_UTR
AAACTTGATGAATTTGATTT+TGG 0.213568 8_1:-8338191 None:intergenic
ATTGAATCAAAATCAAAATA+AGG 0.230522 8_1:+8338113 Msa1176360:five_prime_UTR
AATGAAAGAAAGGTACTTAC+TGG 0.269940 8_1:-8344053 None:intergenic
TCTGTCTTTGGTTGTTCTCC+TGG 0.279321 8_1:+8338422 Msa1176360:CDS
ATCCTAACCTTGTGCATGTT+GGG 0.323712 8_1:-8343712 None:intergenic
TATTCAACGTTTCAATCAAA+AGG 0.343955 8_1:+8338239 Msa1176360:five_prime_UTR
ATGCACAAGGTTAGGATATT+CGG 0.354060 8_1:+8343718 Msa1176360:CDS
GCAAATGATGATTCTTGTAT+AGG 0.362359 8_1:-8344092 None:intergenic
GGTTTACCTATCCTGGTGTT+TGG 0.365733 8_1:+8338354 Msa1176360:CDS
GTTGTTCTCCTGGGATTGCT+TGG 0.366309 8_1:+8338432 Msa1176360:CDS
AACTCCATTTGCAGATGATC+AGG 0.373395 8_1:+8340201 Msa1176360:CDS
CTGTCTTTGGTTGTTCTCCT+GGG 0.396410 8_1:+8338423 Msa1176360:CDS
TGCCACCTGCGGATCTGAAC+AGG 0.406149 8_1:+8338321 Msa1176360:CDS
GAAAGCAGCTCACTCGTAAC+AGG 0.409598 8_1:+8340266 Msa1176360:CDS
CTAAGGCATTAATGAAAGAA+AGG 0.412123 8_1:-8344063 None:intergenic
TTTGTTTGTCCATGAAACTA+TGG 0.427663 8_1:+8343767 Msa1176360:three_prime_UTR
TTGAATCAAAATCAAAATAA+GGG 0.429578 8_1:+8338114 Msa1176360:five_prime_UTR
TGAGCTAAAATTGATTTGCT+TGG 0.434788 8_1:-8338019 None:intergenic
TACTAACAACCATAGTTTCA+TGG 0.442901 8_1:-8343776 None:intergenic
TAGCAACCTTTGTATAGAAA+AGG 0.455565 8_1:+8343847 Msa1176360:three_prime_UTR
TCCCCAACATGCACAAGGTT+AGG 0.468126 8_1:+8343710 Msa1176360:CDS
ACAGAATGGTTTACCTATCC+TGG 0.480715 8_1:+8338347 Msa1176360:CDS
ATTCAACGTTTCAATCAAAA+GGG 0.484393 8_1:+8338240 Msa1176360:five_prime_UTR
GTGTTCCTGTTCAGATCCGC+AGG 0.489888 8_1:-8338326 None:intergenic
GAAAGCACCGTTATAATCTC+TGG 0.493301 8_1:-8344016 None:intergenic
TATCCTAACCTTGTGCATGT+TGG 0.507851 8_1:-8343713 None:intergenic
ATCCCCTGATCATCTGCAAA+TGG 0.508493 8_1:-8340205 None:intergenic
TAGATTGACATGGTGGGAGC+AGG 0.523259 8_1:+8340234 Msa1176360:CDS
ATGGAGTTCCTTTCTTCCAG+TGG 0.534161 8_1:-8340186 None:intergenic
ATCTGAACAGGAACACAGAA+TGG 0.543897 8_1:+8338333 Msa1176360:CDS
CCATGATCCATGAAAAGAAG+AGG 0.551222 8_1:-8338394 None:intergenic
ACTCCATTTGCAGATGATCA+GGG 0.556480 8_1:+8340202 Msa1176360:CDS
ACCGTGTTGAAGAACAGCAT+TGG 0.557220 8_1:-8343658 None:intergenic
ACAATAGTCCAAGCAATCCC+AGG 0.557415 8_1:-8338440 None:intergenic
TGTTGTCCAAACACCAGGAT+AGG 0.561104 8_1:-8338360 None:intergenic
CGCAACAACTAGCACAATCA+CGG 0.570087 8_1:-8343683 None:intergenic
TCCTAACCTTGTGCATGTTG+GGG 0.573459 8_1:-8343711 None:intergenic
TGGTGGGAGCAGGTCGACAA+TGG 0.574609 8_1:+8340244 Msa1176360:CDS
ATATATGTTGTCCAAACACC+AGG 0.585932 8_1:-8338365 None:intergenic
AGAAAAGGCAGAACTGTGGA+AGG 0.593266 8_1:+8343862 Msa1176360:three_prime_UTR
CTCATAGTCAGTTGTGTGTG+AGG 0.593542 8_1:-8343632 None:intergenic
AGGAGAACTTACAGAACCAA+AGG 0.601770 8_1:-8340307 None:intergenic
AGAGAAGGAAGAAAGAAGAG+AGG 0.610698 8_1:-8343808 None:intergenic
TCCAATGCTGTTCTTCAACA+CGG 0.613434 8_1:+8343657 Msa1176360:CDS
CTCCATTTGCAGATGATCAG+GGG 0.621400 8_1:+8340203 Msa1176360:CDS
TCTACAATAGATTGACATGG+TGG 0.624727 8_1:+8340227 Msa1176360:CDS
GAAGTTCCCCAACATGCACA+AGG 0.633964 8_1:+8343705 Msa1176360:CDS
ACGTGTACCAGAGATTATAA+CGG 0.638339 8_1:+8344009 Msa1176360:three_prime_UTR
TGTGTCTGTGAAAATGTGAA+AGG 0.645199 8_1:-8338070 None:intergenic
CTACAATAGATTGACATGGT+GGG 0.646152 8_1:+8340228 Msa1176360:CDS
TTCCTGTTCAGATCCGCAGG+TGG 0.663476 8_1:-8338323 None:intergenic
TGTCAAAGCTGTGCCACCTG+CGG 0.675301 8_1:+8338310 Msa1176360:CDS
GTATAGAAAAGGCAGAACTG+TGG 0.687604 8_1:+8343858 Msa1176360:three_prime_UTR
GGATCTACAATAGATTGACA+TGG 0.711938 8_1:+8340224 Msa1176360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAAAACAAAATAAA+AGG - chr8_1:8338509-8338528 None:intergenic 10.0%
!! AAAATTTAAACAGATAAAAA+TGG + chr8_1:8340912-8340931 Msa1176360:intron 10.0%
!!! TAATATTTATAGAACTTTTT+AGG + chr8_1:8341386-8341405 Msa1176360:intron 10.0%
!!! AATATTTATAGAACTTTTTA+GGG + chr8_1:8341387-8341406 Msa1176360:intron 10.0%
!! ATTGAATCAAAATCAAAATA+AGG + chr8_1:8338113-8338132 Msa1176360:five_prime_UTR 15.0%
!! TTGAATCAAAATCAAAATAA+GGG + chr8_1:8338114-8338133 Msa1176360:five_prime_UTR 15.0%
!! AAAACAAAATAAAAGGAAAA+GGG - chr8_1:8338502-8338521 None:intergenic 15.0%
!! AAAAACAAAATAAAAGGAAA+AGG - chr8_1:8338503-8338522 None:intergenic 15.0%
!! ATTTAGAAAAGATAAAATAG+AGG + chr8_1:8339064-8339083 Msa1176360:intron 15.0%
!! TAAAATAAAAACTGTGATAT+CGG - chr8_1:8340377-8340396 None:intergenic 15.0%
!!! CACAGTTTTTATTTTATTTT+AGG + chr8_1:8340381-8340400 Msa1176360:intron 15.0%
!! TATAATAGCTATAATATAGT+TGG + chr8_1:8340730-8340749 Msa1176360:intron 15.0%
!!! TTTTTTCTAGCAAATATTTA+AGG - chr8_1:8340853-8340872 None:intergenic 15.0%
!!! TTTGTTCATAGATATTTTAA+AGG + chr8_1:8341700-8341719 Msa1176360:intron 15.0%
!!! TTGTTCATAGATATTTTAAA+GGG + chr8_1:8341701-8341720 Msa1176360:intron 15.0%
!!! CATTTAAAACATTTAGTATT+AGG - chr8_1:8341757-8341776 None:intergenic 15.0%
!!! CTAATACTAAATGTTTTAAA+TGG + chr8_1:8341755-8341774 Msa1176360:intron 15.0%
!! ATTGTAACTAAAAATGATAT+GGG + chr8_1:8341782-8341801 Msa1176360:intron 15.0%
!! AAATAATCATTATAAAAACC+AGG - chr8_1:8341830-8341849 None:intergenic 15.0%
!! TTATAATGATTATTTATCGA+AGG + chr8_1:8341835-8341854 Msa1176360:intron 15.0%
!!! TTGATTGAAGAAATATTTTT+AGG + chr8_1:8342204-8342223 Msa1176360:intron 15.0%
!! AAAGTAACATATATAATGTA+CGG + chr8_1:8343079-8343098 Msa1176360:intron 15.0%
!!! GTAAATTTTGGTATTAATAA+TGG - chr8_1:8343464-8343483 None:intergenic 15.0%
!!! AAACTTGATGAATTTGATTT+TGG - chr8_1:8338194-8338213 None:intergenic 20.0%
!! AAACTACAAAATTTCCAAAT+AGG - chr8_1:8338632-8338651 None:intergenic 20.0%
!!! TTTGGAAATTTTGTAGTTTA+AGG + chr8_1:8338633-8338652 Msa1176360:intron 20.0%
!!! TTTGAATTATGTTGTTTTGA+TGG + chr8_1:8338689-8338708 Msa1176360:intron 20.0%
!! ACCAAAAATAATTTGAGAAA+AGG + chr8_1:8338756-8338775 Msa1176360:intron 20.0%
!!! TCCTTTTCTCAAATTATTTT+TGG - chr8_1:8338760-8338779 None:intergenic 20.0%
!! TATTTATTGAGTCATGATTT+AGG + chr8_1:8338969-8338988 Msa1176360:intron 20.0%
!! ATCTTGTGTTAATGATAAAT+AGG + chr8_1:8339023-8339042 Msa1176360:intron 20.0%
!!! TCATTTTCTTAAACTATTAC+TGG - chr8_1:8339182-8339201 None:intergenic 20.0%
!!! TCATTTTCTTAAACTAATAC+TGG - chr8_1:8339249-8339268 None:intergenic 20.0%
!!! GTATTAGTTTAAGAAAATGA+AGG + chr8_1:8339249-8339268 Msa1176360:intron 20.0%
!!! TGTTCATAGATATTTTAAAG+GGG + chr8_1:8341702-8341721 Msa1176360:intron 20.0%
!! GATTGTAACTAAAAATGATA+TGG + chr8_1:8341781-8341800 Msa1176360:intron 20.0%
!! TTGTAACTAAAAATGATATG+GGG + chr8_1:8341783-8341802 Msa1176360:intron 20.0%
!! GAAAAAGTCAAATCAAAATT+TGG + chr8_1:8342034-8342053 Msa1176360:intron 20.0%
!!! TTTGTTATCTACATTATTTG+TGG + chr8_1:8342095-8342114 Msa1176360:intron 20.0%
!! AAGTGAAGAATTATAACAAT+TGG + chr8_1:8342276-8342295 Msa1176360:intron 20.0%
!! AAGAATTATAACAATTGGTT+CGG + chr8_1:8342281-8342300 Msa1176360:intron 20.0%
!!! ATCATTTATAATTTGCACTT+CGG + chr8_1:8342369-8342388 Msa1176360:intron 20.0%
!!! TTTTTTTTTGTTTCTCCTTT+GGG - chr8_1:8342463-8342482 None:intergenic 20.0%
!!! TTTTTTTTTTGTTTCTCCTT+TGG - chr8_1:8342464-8342483 None:intergenic 20.0%
!!! GGTATTTAATTTATATTGGT+AGG + chr8_1:8342675-8342694 Msa1176360:intron 20.0%
!!! GATTTTTTCTTTTCTTTTCT+TGG + chr8_1:8342730-8342749 Msa1176360:intron 20.0%
!!! ATCTAGATTTAAGTTATTCT+TGG - chr8_1:8343235-8343254 None:intergenic 20.0%
!!! ATTTTGGTATTAATAATGGT+TGG - chr8_1:8343460-8343479 None:intergenic 20.0%
!!! TGTTTAAGAGTTGTAAATTT+TGG - chr8_1:8343476-8343495 None:intergenic 20.0%
!!! TAAATAAAGAATGCTTTGTT+CGG + chr8_1:8343497-8343516 Msa1176360:intron 20.0%
!! AAAGAAAGAAAAAAAAAAGC+TGG - chr8_1:8343911-8343930 None:intergenic 20.0%
!! AAAATAAGGGTTACGTTTTT+GGG + chr8_1:8338127-8338146 Msa1176360:five_prime_UTR 25.0%
!!! TTGATGAATTTGATTTTGGT+GGG - chr8_1:8338190-8338209 None:intergenic 25.0%
! TATTCAACGTTTCAATCAAA+AGG + chr8_1:8338239-8338258 Msa1176360:five_prime_UTR 25.0%
! ATTCAACGTTTCAATCAAAA+GGG + chr8_1:8338240-8338259 Msa1176360:five_prime_UTR 25.0%
! CCATCAAATTATGCAAAATT+TGG - chr8_1:8338280-8338299 None:intergenic 25.0%
!! CCAAATTTTGCATAATTTGA+TGG + chr8_1:8338277-8338296 Msa1176360:exon 25.0%
! TATCTTGAAGTTAATTGTGA+CGG + chr8_1:8338924-8338943 Msa1176360:intron 25.0%
! GGAAGACATATATAAATTAG+AGG + chr8_1:8339098-8339117 Msa1176360:intron 25.0%
!! TAAATTAGAGGTATGCTATT+AGG + chr8_1:8339110-8339129 Msa1176360:intron 25.0%
! TTAAATGTAATCACATGTGT+CGG + chr8_1:8339275-8339294 Msa1176360:intron 25.0%
! AGAAAAATTAGAACATTGCA+AGG - chr8_1:8339730-8339749 None:intergenic 25.0%
! TTGATATGATTATGATTTCG+CGG + chr8_1:8339867-8339886 Msa1176360:intron 25.0%
!!! TTCATCTTCCTTTGATTTTT+TGG + chr8_1:8339923-8339942 Msa1176360:intron 25.0%
!!! TCATCTTCCTTTGATTTTTT+GGG + chr8_1:8339924-8339943 Msa1176360:intron 25.0%
! CATAGTCAAACATAATAACA+AGG + chr8_1:8339970-8339989 Msa1176360:intron 25.0%
!! TTTTATAAAAGCTACTTGAC+TGG + chr8_1:8340044-8340063 Msa1176360:intron 25.0%
! TTTATAAAAGCTACTTGACT+GGG + chr8_1:8340045-8340064 Msa1176360:intron 25.0%
!! GTTAATTTGATCTCTTTACA+TGG + chr8_1:8340119-8340138 Msa1176360:intron 25.0%
! ATATAAACACTAGCAGTAAT+TGG + chr8_1:8340416-8340435 Msa1176360:intron 25.0%
!! AAATAAATGTCACTTCTATG+AGG + chr8_1:8340567-8340586 Msa1176360:intron 25.0%
! TACTCACAAGTCAATTAAAT+TGG - chr8_1:8340613-8340632 None:intergenic 25.0%
! ATAGCTATAATATAGTTGGT+AGG + chr8_1:8340734-8340753 Msa1176360:intron 25.0%
!!! TATAATATAGTTGGTAGGTT+GGG + chr8_1:8340739-8340758 Msa1176360:intron 25.0%
!! CAGAAGTTATGTTACTTAAA+AGG + chr8_1:8340788-8340807 Msa1176360:intron 25.0%
! TTAAAAGGTTTGTATCTGTA+TGG + chr8_1:8340803-8340822 Msa1176360:intron 25.0%
!! AATTTTATCACTTATTCCCA+AGG + chr8_1:8341609-8341628 Msa1176360:intron 25.0%
!!! GTTCATAGATATTTTAAAGG+GGG + chr8_1:8341703-8341722 Msa1176360:intron 25.0%
! GAAAGTAATAAATGATAACC+TGG + chr8_1:8341809-8341828 Msa1176360:intron 25.0%
! AAAGTCAAATCAAAATTTGG+AGG + chr8_1:8342037-8342056 Msa1176360:intron 25.0%
!!! TCATAACCAGAGTTTTTTAA+GGG - chr8_1:8342151-8342170 None:intergenic 25.0%
!! CTTCAATCAAAACAATTTTG+CGG - chr8_1:8342194-8342213 None:intergenic 25.0%
!! CTTTTGTAAACTTTCTGATA+AGG + chr8_1:8342527-8342546 Msa1176360:intron 25.0%
!! CGTCGGTATTTAATTTATAT+TGG + chr8_1:8342671-8342690 Msa1176360:intron 25.0%
! AAGAAAAGAAAAAATCATGC+TGG - chr8_1:8342726-8342745 None:intergenic 25.0%
! TAAAAACATGCAATACGTTA+TGG - chr8_1:8342797-8342816 None:intergenic 25.0%
! GTAAATAGTCAAAACATGTA+TGG + chr8_1:8342991-8343010 Msa1176360:intron 25.0%
!!! TCTATCATTTTTTCCTACAT+GGG - chr8_1:8343111-8343130 None:intergenic 25.0%
!!! ATCTATCATTTTTTCCTACA+TGG - chr8_1:8343112-8343131 None:intergenic 25.0%
! AAATGATAGATTGTTGTCTA+AGG + chr8_1:8343121-8343140 Msa1176360:intron 25.0%
! AAATAGACTATTACAATCCT+TGG + chr8_1:8343161-8343180 Msa1176360:intron 25.0%
! TTACCAAATGACTTATTTGA+AGG + chr8_1:8343559-8343578 Msa1176360:intron 25.0%
!! AATATTTTCTTCTCATTGAC+AGG + chr8_1:8343599-8343618 Msa1176360:intron 25.0%
!! TGAGCTAAAATTGATTTGCT+TGG - chr8_1:8338022-8338041 None:intergenic 30.0%
! CAAAATAAGGGTTACGTTTT+TGG + chr8_1:8338126-8338145 Msa1176360:five_prime_UTR 30.0%
!!! ATTTTGGTGGGTTTGATTTA+GGG - chr8_1:8338178-8338197 None:intergenic 30.0%
!! CTTGATGAATTTGATTTTGG+TGG - chr8_1:8338191-8338210 None:intergenic 30.0%
TAATCATCAAAGGACAAATC+AGG - chr8_1:8338609-8338628 None:intergenic 30.0%
! TCCTTTGATGATTACCTATT+TGG + chr8_1:8338615-8338634 Msa1176360:intron 30.0%
TCCAAATAGGTAATCATCAA+AGG - chr8_1:8338619-8338638 None:intergenic 30.0%
!!! TATTTTTGGTATCGACATGT+TGG - chr8_1:8338746-8338765 None:intergenic 30.0%
ACTGTATGTATGAGTTTCAT+GGG + chr8_1:8338876-8338895 Msa1176360:intron 30.0%
GTGTTAATGATAAATAGGTC+AGG + chr8_1:8339028-8339047 Msa1176360:intron 30.0%
TTAAATGTAACCACATGTGT+CGG + chr8_1:8339208-8339227 Msa1176360:intron 30.0%
ATTTAGTAAAGCTGACACTT+TGG - chr8_1:8339338-8339357 None:intergenic 30.0%
ACTAAATCCTAATGTGCTAT+TGG + chr8_1:8339351-8339370 Msa1176360:intron 30.0%
TTTACTTCCAATAGCACATT+AGG - chr8_1:8339361-8339380 None:intergenic 30.0%
AGTTAACGTAAACTAGCAAT+TGG - chr8_1:8339433-8339452 None:intergenic 30.0%
TAGTTTACGTTAACTGCAAT+TGG + chr8_1:8339438-8339457 Msa1176360:intron 30.0%
TAAACTACTCCTAGTTAACA+AGG - chr8_1:8339820-8339839 None:intergenic 30.0%
TCATAATCATATCAAGTACC+TGG - chr8_1:8339862-8339881 None:intergenic 30.0%
AATGCTACATGAGCTAAAAT+GGG - chr8_1:8339999-8340018 None:intergenic 30.0%
AAATGCTACATGAGCTAAAA+TGG - chr8_1:8340000-8340019 None:intergenic 30.0%
!!! TAACATATCACTTTTTCCAC+TGG + chr8_1:8340170-8340189 Msa1176360:CDS 30.0%
! TTTTCGTCTGTATCTTAATG+TGG + chr8_1:8340531-8340550 Msa1176360:intron 30.0%
TTTCTGTCTCTTCTTATATG+TGG + chr8_1:8340651-8340670 Msa1176360:intron 30.0%
TTCTGTCTCTTCTTATATGT+GGG + chr8_1:8340652-8340671 Msa1176360:intron 30.0%
! AATTCTTTTCGCAACTAGAA+GGG - chr8_1:8340701-8340720 None:intergenic 30.0%
! AAATTCTTTTCGCAACTAGA+AGG - chr8_1:8340702-8340721 None:intergenic 30.0%
!! CTATAATATAGTTGGTAGGT+TGG + chr8_1:8340738-8340757 Msa1176360:intron 30.0%
GATATATAACCAGCATGATT+GGG - chr8_1:8340954-8340973 None:intergenic 30.0%
CTATGTACGATATAAATACC+AGG - chr8_1:8340976-8340995 None:intergenic 30.0%
!!! GAATGCAGTGTTTTAAAAAC+CGG + chr8_1:8341010-8341029 Msa1176360:intron 30.0%
!!! AATGCAGTGTTTTAAAAACC+GGG + chr8_1:8341011-8341030 Msa1176360:intron 30.0%
ACGGCAAGTATTAATTAGAT+TGG - chr8_1:8341341-8341360 None:intergenic 30.0%
!!! TCAAGCAGTGTTTTTAAAAC+CGG - chr8_1:8341563-8341582 None:intergenic 30.0%
TTTCTTGCATAATAGTTGCA+AGG - chr8_1:8341650-8341669 None:intergenic 30.0%
CAACTATTATGCAAGAAAGA+CGG + chr8_1:8341652-8341671 Msa1176360:intron 30.0%
AAGGGGGATTCTAAATTATT+TGG + chr8_1:8341719-8341738 Msa1176360:intron 30.0%
AGGGGGATTCTAAATTATTT+GGG + chr8_1:8341720-8341739 Msa1176360:intron 30.0%
AATGACAAACATACACAGAT+GGG - chr8_1:8341891-8341910 None:intergenic 30.0%
TAATGACAAACATACACAGA+TGG - chr8_1:8341892-8341911 None:intergenic 30.0%
ATGTTTGTCATTATGACCAA+AGG + chr8_1:8341899-8341918 Msa1176360:intron 30.0%
TAGTTTCCCTTAAAAAACTC+TGG + chr8_1:8342142-8342161 Msa1176360:intron 30.0%
!!! CTCATAACCAGAGTTTTTTA+AGG - chr8_1:8342152-8342171 None:intergenic 30.0%
CTTAAAAAACTCTGGTTATG+AGG + chr8_1:8342150-8342169 Msa1176360:intron 30.0%
AAAAGAACCTGAATCTCAAA+GGG - chr8_1:8342512-8342531 None:intergenic 30.0%
TTGTAAACTTTCTGATAAGG+TGG + chr8_1:8342530-8342549 Msa1176360:intron 30.0%
TGTAAACTTTCTGATAAGGT+GGG + chr8_1:8342531-8342550 Msa1176360:intron 30.0%
!!! ACGTATTGCATGTTTTTAGT+TGG + chr8_1:8342799-8342818 Msa1176360:intron 30.0%
! ATTAGACTTGTGTCATTCTA+TGG + chr8_1:8342943-8342962 Msa1176360:intron 30.0%
! TTGTGTCATTCTATGGTATT+TGG + chr8_1:8342950-8342969 Msa1176360:intron 30.0%
TAGTCAAAACATGTATGGTA+AGG + chr8_1:8342996-8343015 Msa1176360:intron 30.0%
! ATGTAGCTTTTCTATCTACT+TGG + chr8_1:8343307-8343326 Msa1176360:intron 30.0%
! TGTAGCTTTTCTATCTACTT+GGG + chr8_1:8343308-8343327 Msa1176360:intron 30.0%
AGTGAGCTTACAAAAATCTT+TGG + chr8_1:8343357-8343376 Msa1176360:intron 30.0%
AGTTTAAAAGTCGAGTTTCT+TGG - chr8_1:8343387-8343406 None:intergenic 30.0%
TAGCCTTCAAATAAGTCATT+TGG - chr8_1:8343565-8343584 None:intergenic 30.0%
TTTGTTTGTCCATGAAACTA+TGG + chr8_1:8343767-8343786 Msa1176360:three_prime_UTR 30.0%
TACTAACAACCATAGTTTCA+TGG - chr8_1:8343779-8343798 None:intergenic 30.0%
TAGCAACCTTTGTATAGAAA+AGG + chr8_1:8343847-8343866 Msa1176360:three_prime_UTR 30.0%
!! AATGAAAGAAAGGTACTTAC+TGG - chr8_1:8344056-8344075 None:intergenic 30.0%
! CTAAGGCATTAATGAAAGAA+AGG - chr8_1:8344066-8344085 None:intergenic 30.0%
! TCTTGTATAGGAGTTTTCTA+AGG - chr8_1:8344083-8344102 None:intergenic 30.0%
GCAAATGATGATTCTTGTAT+AGG - chr8_1:8344095-8344114 None:intergenic 30.0%
TGTGTCTGTGAAAATGTGAA+AGG - chr8_1:8338073-8338092 None:intergenic 35.0%
!!! GATTTTGGTGGGTTTGATTT+AGG - chr8_1:8338179-8338198 None:intergenic 35.0%
ATATATGTTGTCCAAACACC+AGG - chr8_1:8338368-8338387 None:intergenic 35.0%
! TTCTCATCCTCTTCTTTTCA+TGG + chr8_1:8338387-8338406 Msa1176360:CDS 35.0%
!!! ATCATGGTTTTGTCTGTCTT+TGG + chr8_1:8338410-8338429 Msa1176360:CDS 35.0%
AATGTTCGTACTATGAAGCA+CGG + chr8_1:8338717-8338736 Msa1176360:intron 35.0%
AGTAATCATATGTGTCGTGT+TGG + chr8_1:8338790-8338809 Msa1176360:intron 35.0%
GACTGTATGTATGAGTTTCA+TGG + chr8_1:8338875-8338894 Msa1176360:intron 35.0%
CTGTATGTATGAGTTTCATG+GGG + chr8_1:8338877-8338896 Msa1176360:intron 35.0%
!! TAATTGTGACGGACATGATA+AGG + chr8_1:8338935-8338954 Msa1176360:intron 35.0%
CTGCATAGTTGTTTAGTGTA+GGG + chr8_1:8338992-8339011 Msa1176360:intron 35.0%
AAAATAGAGGACAGAGATCT+TGG + chr8_1:8339077-8339096 Msa1176360:intron 35.0%
!! TAAAGCACTGCCAAATACAT+CGG + chr8_1:8339137-8339156 Msa1176360:intron 35.0%
AAAGGATTAATGGGATACAG+AGG - chr8_1:8339470-8339489 None:intergenic 35.0%
! TCACTGTTAGAGTATTTGCT+TGG + chr8_1:8339540-8339559 Msa1176360:intron 35.0%
CTTGTCAATTGTTGTGATGA+GGG + chr8_1:8339591-8339610 Msa1176360:intron 35.0%
TAGAACATTGCAAGGATGAT+GGG - chr8_1:8339722-8339741 None:intergenic 35.0%
TTAGAACATTGCAAGGATGA+TGG - chr8_1:8339723-8339742 None:intergenic 35.0%
!! GTACTTCTAAAGTCAAACAG+AGG - chr8_1:8339764-8339783 None:intergenic 35.0%
! CTTTAGAAGTACACTAGTTC+AGG + chr8_1:8339772-8339791 Msa1176360:intron 35.0%
GTAGTCATTCCTTGTTAACT+AGG + chr8_1:8339808-8339827 Msa1176360:intron 35.0%
!!! TTTATTTTTGACTGAGAGCC+AGG + chr8_1:8339841-8339860 Msa1176360:intron 35.0%
!!! CTTCCTTTGATTTTTTGGGT+AGG + chr8_1:8339928-8339947 Msa1176360:intron 35.0%
CTACCTACCCAAAAAATCAA+AGG - chr8_1:8339934-8339953 None:intergenic 35.0%
TTGATTATGTTGTGTGCTTC+AGG + chr8_1:8340147-8340166 Msa1176360:intron 35.0%
GGATCTACAATAGATTGACA+TGG + chr8_1:8340224-8340243 Msa1176360:CDS 35.0%
TCTACAATAGATTGACATGG+TGG + chr8_1:8340227-8340246 Msa1176360:CDS 35.0%
CTACAATAGATTGACATGGT+GGG + chr8_1:8340228-8340247 Msa1176360:CDS 35.0%
! GTTTTTGACAGTTGTTCCTT+TGG + chr8_1:8340291-8340310 Msa1176360:CDS 35.0%
AATGCAGGTATGCAAGTTAA+AGG - chr8_1:8340330-8340349 None:intergenic 35.0%
!! TTTAACTTGCATACCTGCAT+TGG + chr8_1:8340329-8340348 Msa1176360:intron 35.0%
!!! ATACCTGCATTGGTTTTTAG+TGG + chr8_1:8340339-8340358 Msa1176360:intron 35.0%
!!! GTTTTTAGTGGTGTTTGTTC+CGG + chr8_1:8340351-8340370 Msa1176360:intron 35.0%
ATAAAAACTGTGATATCGGC+CGG - chr8_1:8340373-8340392 None:intergenic 35.0%
TCTTATATGTGGGCATGATA+TGG + chr8_1:8340662-8340681 Msa1176360:intron 35.0%
ACTAGAAGGGAATAACACAT+AGG - chr8_1:8340688-8340707 None:intergenic 35.0%
TTTGATTGTTAGCGAGAGAA+AGG + chr8_1:8340878-8340897 Msa1176360:intron 35.0%
TTGATTGTTAGCGAGAGAAA+GGG + chr8_1:8340879-8340898 Msa1176360:intron 35.0%
GGATATATAACCAGCATGAT+TGG - chr8_1:8340955-8340974 None:intergenic 35.0%
! ATCATGCTGGTTATATATCC+TGG + chr8_1:8340955-8340974 Msa1176360:intron 35.0%
AAAACACTGCATTCAATCTC+TGG - chr8_1:8341004-8341023 None:intergenic 35.0%
ATATAGTATAGTGACCTGTC+CGG - chr8_1:8341069-8341088 None:intergenic 35.0%
ATTCCATTGTTGCACACTAT+TGG - chr8_1:8341232-8341251 None:intergenic 35.0%
CCAAACTAAATCGAATGACT+TGG - chr8_1:8341414-8341433 None:intergenic 35.0%
CCAAGTCATTCGATTTAGTT+TGG + chr8_1:8341411-8341430 Msa1176360:intron 35.0%
!!! CATGTTTTAACCAGATGACT+TGG - chr8_1:8341475-8341494 None:intergenic 35.0%
AGTCATCTGGTTAAAACATG+TGG + chr8_1:8341475-8341494 Msa1176360:intron 35.0%
! TGCTTGAATGACATTTGTTG+AGG + chr8_1:8341576-8341595 Msa1176360:intron 35.0%
GTTATACACTTGCATTCCTT+GGG - chr8_1:8341628-8341647 None:intergenic 35.0%
CAAAATTTGCGACTGCATTT+GGG - chr8_1:8341978-8341997 None:intergenic 35.0%
TCAAAATTTGCGACTGCATT+TGG - chr8_1:8341979-8341998 None:intergenic 35.0%
! ATGCAGTCGCAAATTTTGAA+TGG + chr8_1:8341980-8341999 Msa1176360:intron 35.0%
TTGGAGGTTTCTATTCTTCA+TGG + chr8_1:8342053-8342072 Msa1176360:intron 35.0%
TTTCTATTCTTCATGGTGTC+TGG + chr8_1:8342060-8342079 Msa1176360:intron 35.0%
TTCTATTCTTCATGGTGTCT+GGG + chr8_1:8342061-8342080 Msa1176360:intron 35.0%
ATTTGCACTTCGGTCTTTAA+AGG + chr8_1:8342379-8342398 Msa1176360:intron 35.0%
TTTGCACTTCGGTCTTTAAA+GGG + chr8_1:8342380-8342399 Msa1176360:intron 35.0%
CAAAAGAACCTGAATCTCAA+AGG - chr8_1:8342513-8342532 None:intergenic 35.0%
! TAGATAGTTTTCTGCAGTGA+GGG + chr8_1:8342628-8342647 Msa1176360:intron 35.0%
!! TAATTAATCTGAGGCATCGT+CGG + chr8_1:8342654-8342673 Msa1176360:intron 35.0%
!! CCTCTATTGACTCTCTAAAT+AGG - chr8_1:8342834-8342853 None:intergenic 35.0%
CCTATTTAGAGAGTCAATAG+AGG + chr8_1:8342831-8342850 Msa1176360:intron 35.0%
AATTTCTGCACCATCTAGTA+TGG - chr8_1:8342901-8342920 None:intergenic 35.0%
TGATAGATTGTTGTCTAAGG+TGG + chr8_1:8343124-8343143 Msa1176360:intron 35.0%
GTAATAGTCTATTTCCCACA+TGG - chr8_1:8343155-8343174 None:intergenic 35.0%
ACAATCCTTGGTAAGAAGAT+TGG + chr8_1:8343173-8343192 Msa1176360:intron 35.0%
! AAATCTAGATATGCTTGCTG+AGG + chr8_1:8343245-8343264 Msa1176360:intron 35.0%
! CTTTTCTATCTACTTGGGTT+GGG + chr8_1:8343313-8343332 Msa1176360:intron 35.0%
ATGCACAAGGTTAGGATATT+CGG + chr8_1:8343718-8343737 Msa1176360:CDS 35.0%
!!! CTTTTTTCCAGAACAAGAGA+AGG - chr8_1:8343826-8343845 None:intergenic 35.0%
! GTTCTGCCTTTTCTATACAA+AGG - chr8_1:8343856-8343875 None:intergenic 35.0%
CTTCTAAGCTTCTTCTTCTA+AGG + chr8_1:8343932-8343951 Msa1176360:three_prime_UTR 35.0%
ACGTGTACCAGAGATTATAA+CGG + chr8_1:8344009-8344028 Msa1176360:three_prime_UTR 35.0%
!!! AGGGTTACGTTTTTGGGTTT+TGG + chr8_1:8338133-8338152 Msa1176360:five_prime_UTR 40.0%
ATCTGAACAGGAACACAGAA+TGG + chr8_1:8338333-8338352 Msa1176360:CDS 40.0%
ACAGAATGGTTTACCTATCC+TGG + chr8_1:8338347-8338366 Msa1176360:CDS 40.0%
CCATGATCCATGAAAAGAAG+AGG - chr8_1:8338397-8338416 None:intergenic 40.0%
! CCTCTTCTTTTCATGGATCA+TGG + chr8_1:8338394-8338413 Msa1176360:CDS 40.0%
! CTTATTACCGAAAGTGTGTC+CGG - chr8_1:8338842-8338861 None:intergenic 40.0%
! TGACGGACATGATAAGGTTT+CGG + chr8_1:8338941-8338960 Msa1176360:intron 40.0%
GCTGCATAGTTGTTTAGTGT+AGG + chr8_1:8338991-8339010 Msa1176360:intron 40.0%
AGTAAAGCTGACACTTTGGA+TGG - chr8_1:8339334-8339353 None:intergenic 40.0%
CTTCTGTTGTCTCATGTCAT+GGG + chr8_1:8339395-8339414 Msa1176360:intron 40.0%
TCCCATTAATCCTTTGCCAT+TGG + chr8_1:8339475-8339494 Msa1176360:intron 40.0%
GCCAATGGCAAAGGATTAAT+GGG - chr8_1:8339479-8339498 None:intergenic 40.0%
TGCCAATGGCAAAGGATTAA+TGG - chr8_1:8339480-8339499 None:intergenic 40.0%
AATCCTTTGCCATTGGCATT+TGG + chr8_1:8339482-8339501 Msa1176360:intron 40.0%
TCTGTCACAGTCTCTTGATT+TGG + chr8_1:8339505-8339524 Msa1176360:intron 40.0%
TCACAACAATTGACAAGGAG+AGG - chr8_1:8339588-8339607 None:intergenic 40.0%
CCTCATCACAACAATTGACA+AGG - chr8_1:8339593-8339612 None:intergenic 40.0%
CCTTGTCAATTGTTGTGATG+AGG + chr8_1:8339590-8339609 Msa1176360:intron 40.0%
TAGGAGGAACAAAGATCTGA+AGG - chr8_1:8339635-8339654 None:intergenic 40.0%
GGCAATAAACTGAATCTAGG+AGG - chr8_1:8339651-8339670 None:intergenic 40.0%
CCAATGTAGTTCAAGAATCG+CGG - chr8_1:8339672-8339691 None:intergenic 40.0%
! TCTAAAGTCAAACAGAGGAG+AGG - chr8_1:8339759-8339778 None:intergenic 40.0%
AGCTCATGTAGCATTTAGTG+AGG + chr8_1:8340004-8340023 Msa1176360:intron 40.0%
!!! CACTTTTTCCACTGGAAGAA+AGG + chr8_1:8340178-8340197 Msa1176360:CDS 40.0%
AACTCCATTTGCAGATGATC+AGG + chr8_1:8340201-8340220 Msa1176360:CDS 40.0%
ACTCCATTTGCAGATGATCA+GGG + chr8_1:8340202-8340221 Msa1176360:CDS 40.0%
AGGAGAACTTACAGAACCAA+AGG - chr8_1:8340310-8340329 None:intergenic 40.0%
ACACCACTAAAAACCAATGC+AGG - chr8_1:8340345-8340364 None:intergenic 40.0%
! GTTGGTAGGTTGGGTTTATT+TGG + chr8_1:8340748-8340767 Msa1176360:intron 40.0%
AGACTGCTCATGTATTGAAC+CGG + chr8_1:8341090-8341109 Msa1176360:intron 40.0%
TAAGCCTGTATGAACTGATG+TGG + chr8_1:8341124-8341143 Msa1176360:intron 40.0%
TATTGAAAGTAGCCTGTACC+AGG + chr8_1:8341194-8341213 Msa1176360:intron 40.0%
ATTGAAAGTAGCCTGTACCA+GGG + chr8_1:8341195-8341214 Msa1176360:intron 40.0%
TTGTTGCACACTATTGGAAG+TGG - chr8_1:8341226-8341245 None:intergenic 40.0%
CTTCCAATAGTGTGCAACAA+TGG + chr8_1:8341226-8341245 Msa1176360:intron 40.0%
! CCAACGAACAACTGACTTAA+TGG - chr8_1:8341260-8341279 None:intergenic 40.0%
CCATTAAGTCAGTTGTTCGT+TGG + chr8_1:8341257-8341276 Msa1176360:intron 40.0%
AGTGATACAACCAAGTCATC+TGG + chr8_1:8341462-8341481 Msa1176360:intron 40.0%
AAAACATGTGGTTCGACTAG+TGG + chr8_1:8341487-8341506 Msa1176360:intron 40.0%
!!! CAGTGTTTTTAAAACCGGCT+CGG - chr8_1:8341558-8341577 None:intergenic 40.0%
GGTTATACACTTGCATTCCT+TGG - chr8_1:8341629-8341648 None:intergenic 40.0%
TGTAGTCTCTTAGCTTCACT+AGG + chr8_1:8341862-8341881 Msa1176360:intron 40.0%
TCTATTCTTCATGGTGTCTG+GGG + chr8_1:8342062-8342081 Msa1176360:intron 40.0%
TTATTTGTGGTGAAACTGCG+TGG + chr8_1:8342108-8342127 Msa1176360:intron 40.0%
!! ACAATTGGTTCGGAAATCAG+CGG + chr8_1:8342291-8342310 Msa1176360:intron 40.0%
!! CTTTGCTCCTCTAAGGTAAT+GGG - chr8_1:8342408-8342427 None:intergenic 40.0%
!! TCTTTGCTCCTCTAAGGTAA+TGG - chr8_1:8342409-8342428 None:intergenic 40.0%
GTCATTTCTTTGCTCCTCTA+AGG - chr8_1:8342415-8342434 None:intergenic 40.0%
!! AGCAAATCCCTTTGAGATTC+AGG + chr8_1:8342502-8342521 Msa1176360:intron 40.0%
AGACATTAAGTGACGCACAA+TGG - chr8_1:8342607-8342626 None:intergenic 40.0%
! CTAGATAGTTTTCTGCAGTG+AGG + chr8_1:8342627-8342646 Msa1176360:intron 40.0%
!! TGAGGGCGTTAATTAATCTG+AGG + chr8_1:8342645-8342664 Msa1176360:intron 40.0%
! TACGTTATGGTACTAGCTCT+TGG - chr8_1:8342784-8342803 None:intergenic 40.0%
ACGTCAAAGCTTGCAACTTA+TGG - chr8_1:8342877-8342896 None:intergenic 40.0%
CTTTGACGTACCATACTAGA+TGG + chr8_1:8342888-8342907 Msa1176360:intron 40.0%
CCAATCCAATCTTCTTACCA+AGG - chr8_1:8343181-8343200 None:intergenic 40.0%
CCTTGGTAAGAAGATTGGAT+TGG + chr8_1:8343178-8343197 Msa1176360:intron 40.0%
! TGGTAAGAAGATTGGATTGG+AGG + chr8_1:8343181-8343200 Msa1176360:intron 40.0%
! GGTAAGAAGATTGGATTGGA+GGG + chr8_1:8343182-8343201 Msa1176360:intron 40.0%
! GCTTTTCTATCTACTTGGGT+TGG + chr8_1:8343312-8343331 Msa1176360:intron 40.0%
!! TATCTACTTGGGTTGGGAAA+GGG + chr8_1:8343319-8343338 Msa1176360:intron 40.0%
TCCAATGCTGTTCTTCAACA+CGG + chr8_1:8343657-8343676 Msa1176360:CDS 40.0%
ATCCTAACCTTGTGCATGTT+GGG - chr8_1:8343715-8343734 None:intergenic 40.0%
TATCCTAACCTTGTGCATGT+TGG - chr8_1:8343716-8343735 None:intergenic 40.0%
AGAGAAGGAAGAAAGAAGAG+AGG - chr8_1:8343811-8343830 None:intergenic 40.0%
CTTTCTTCCTTCTCTTGTTC+TGG + chr8_1:8343816-8343835 Msa1176360:three_prime_UTR 40.0%
GTATAGAAAAGGCAGAACTG+TGG + chr8_1:8343858-8343877 Msa1176360:three_prime_UTR 40.0%
!! GAAAGCACCGTTATAATCTC+TGG - chr8_1:8344019-8344038 None:intergenic 40.0%
GGTTTACCTATCCTGGTGTT+TGG + chr8_1:8338354-8338373 Msa1176360:CDS 45.0%
TGTTGTCCAAACACCAGGAT+AGG - chr8_1:8338363-8338382 None:intergenic 45.0%
TCTGTCTTTGGTTGTTCTCC+TGG + chr8_1:8338422-8338441 Msa1176360:CDS 45.0%
CTGTCTTTGGTTGTTCTCCT+GGG + chr8_1:8338423-8338442 Msa1176360:CDS 45.0%
ACAATAGTCCAAGCAATCCC+AGG - chr8_1:8338443-8338462 None:intergenic 45.0%
! CATATGTGTCGTGTTGGTGT+CGG + chr8_1:8338796-8338815 Msa1176360:intron 45.0%
! GTGTCATGTGCCGATGTATT+TGG - chr8_1:8339150-8339169 None:intergenic 45.0%
ACATACAACACCGACACATG+TGG - chr8_1:8339221-8339240 None:intergenic 45.0%
!! CACATGTGTCGGTGTTGTAT+TGG + chr8_1:8339219-8339238 Msa1176360:intron 45.0%
AAGCTGACACTTTGGATGGA+AGG - chr8_1:8339330-8339349 None:intergenic 45.0%
GCTTCTGTTGTCTCATGTCA+TGG + chr8_1:8339394-8339413 Msa1176360:intron 45.0%
AGACCAAATGCCAATGGCAA+AGG - chr8_1:8339488-8339507 None:intergenic 45.0%
TGTGACAGACCAAATGCCAA+TGG - chr8_1:8339494-8339513 None:intergenic 45.0%
TTGTTGTGATGAGGGATGAC+TGG + chr8_1:8339599-8339618 Msa1176360:intron 45.0%
TGTTGTGATGAGGGATGACT+GGG + chr8_1:8339600-8339619 Msa1176360:intron 45.0%
CGCGGCAATAAACTGAATCT+AGG - chr8_1:8339654-8339673 None:intergenic 45.0%
CCGCGATTCTTGAACTACAT+TGG + chr8_1:8339669-8339688 Msa1176360:intron 45.0%
ATGTAGCATTTAGTGAGGCG+AGG + chr8_1:8340009-8340028 Msa1176360:intron 45.0%
TGTAGCATTTAGTGAGGCGA+GGG + chr8_1:8340010-8340029 Msa1176360:intron 45.0%
ATGGAGTTCCTTTCTTCCAG+TGG - chr8_1:8340189-8340208 None:intergenic 45.0%
CTCCATTTGCAGATGATCAG+GGG + chr8_1:8340203-8340222 Msa1176360:CDS 45.0%
ATCCCCTGATCATCTGCAAA+TGG - chr8_1:8340208-8340227 None:intergenic 45.0%
GTGAAAACTCCCAATCATGC+TGG + chr8_1:8340942-8340961 Msa1176360:intron 45.0%
!!! CAGTGTTTTAAAAACCGGGC+CGG + chr8_1:8341015-8341034 Msa1176360:intron 45.0%
CAGACCACATCAGTTCATAC+AGG - chr8_1:8341131-8341150 None:intergenic 45.0%
CTGTATGAACTGATGTGGTC+TGG + chr8_1:8341129-8341148 Msa1176360:intron 45.0%
!! CGGTAAGGGTATTAAGTCAC+TGG - chr8_1:8341526-8341545 None:intergenic 45.0%
ACACTTTGATGAGAGGCCTT+TGG - chr8_1:8341918-8341937 None:intergenic 45.0%
AAAGGCCTCTCATCAAAGTG+TGG + chr8_1:8341917-8341936 Msa1176360:intron 45.0%
CTTCACCACACTTTGATGAG+AGG - chr8_1:8341925-8341944 None:intergenic 45.0%
CCTTTGGGCTCATGTTAAGT+AGG - chr8_1:8342448-8342467 None:intergenic 45.0%
CCTACTTAACATGAGCCCAA+AGG + chr8_1:8342445-8342464 Msa1176360:intron 45.0%
ACTTTCTGATAAGGTGGGCA+TGG + chr8_1:8342536-8342555 Msa1176360:intron 45.0%
! GATTGTTGTCTAAGGTGGCT+AGG + chr8_1:8343129-8343148 Msa1176360:intron 45.0%
! AGAAGATTGGATTGGAGGGT+AGG + chr8_1:8343186-8343205 Msa1176360:intron 45.0%
! TAGGCCATAAGAGTGTGAAG+AGG + chr8_1:8343205-8343224 Msa1176360:intron 45.0%
! AGGCCATAAGAGTGTGAAGA+GGG + chr8_1:8343206-8343225 Msa1176360:intron 45.0%
TCTCCCTCTTCACACTCTTA+TGG - chr8_1:8343212-8343231 None:intergenic 45.0%
!! CTATCTACTTGGGTTGGGAA+AGG + chr8_1:8343318-8343337 Msa1176360:intron 45.0%
GTTGGGAAAGGGTTTGATTG+TGG + chr8_1:8343330-8343349 Msa1176360:intron 45.0%
CTCATAGTCAGTTGTGTGTG+AGG - chr8_1:8343635-8343654 None:intergenic 45.0%
ACCGTGTTGAAGAACAGCAT+TGG - chr8_1:8343661-8343680 None:intergenic 45.0%
CGCAACAACTAGCACAATCA+CGG - chr8_1:8343686-8343705 None:intergenic 45.0%
TCCTAACCTTGTGCATGTTG+GGG - chr8_1:8343714-8343733 None:intergenic 45.0%
AGAAAAGGCAGAACTGTGGA+AGG + chr8_1:8343862-8343881 Msa1176360:three_prime_UTR 45.0%
!! TCTATTTATTATTAAAAAAA+CGG - chr8_1:8341360-8341379 None:intergenic 5.0%
!! TTTATCATAATTTAAATAAT+TGG + chr8_1:8342336-8342355 Msa1176360:intron 5.0%
GTTGTTCTCCTGGGATTGCT+TGG + chr8_1:8338432-8338451 Msa1176360:CDS 50.0%
TGTCGGACACTAGGACATGT+TGG + chr8_1:8338813-8338832 Msa1176360:intron 50.0%
CACTAGGACATGTTGGACAC+CGG + chr8_1:8338820-8338839 Msa1176360:intron 50.0%
TTGGACACCGGACACACTTT+CGG + chr8_1:8338832-8338851 Msa1176360:intron 50.0%
CTGTTGTCTCATGTCATGGG+TGG + chr8_1:8339398-8339417 Msa1176360:intron 50.0%
GAGAGGCTCACACGAGATAT+TGG - chr8_1:8339571-8339590 None:intergenic 50.0%
TGATGAGGGATGACTGGGTA+GGG + chr8_1:8339605-8339624 Msa1176360:intron 50.0%
GTAGCATTTAGTGAGGCGAG+GGG + chr8_1:8340011-8340030 Msa1176360:intron 50.0%
! TAGATTGACATGGTGGGAGC+AGG + chr8_1:8340234-8340253 Msa1176360:CDS 50.0%
GAAAGCAGCTCACTCGTAAC+AGG + chr8_1:8340266-8340285 Msa1176360:CDS 50.0%
CAGACTGGGAATTGGACCTA+CGG + chr8_1:8341043-8341062 Msa1176360:intron 50.0%
CAGGCTTATGCGTGTTTGAC+CGG - chr8_1:8341112-8341131 None:intergenic 50.0%
TATTGGAAGTGGTTCGACCC+TGG - chr8_1:8341215-8341234 None:intergenic 50.0%
AAGTCACTGGCCAAACCACA+GGG - chr8_1:8341513-8341532 None:intergenic 50.0%
TAAGTCACTGGCCAAACCAC+AGG - chr8_1:8341514-8341533 None:intergenic 50.0%
CTCGGTGATCAACTCGGTAA+GGG - chr8_1:8341540-8341559 None:intergenic 50.0%
AAGGGCTCCCATTACCTTAG+AGG + chr8_1:8342398-8342417 Msa1176360:intron 50.0%
TCTGATAAGGTGGGCATGGT+TGG + chr8_1:8342540-8342559 Msa1176360:intron 50.0%
TGTACGGACAACACCCATGT+AGG + chr8_1:8343095-8343114 Msa1176360:intron 50.0%
GAAGTTCCCCAACATGCACA+AGG + chr8_1:8343705-8343724 Msa1176360:CDS 50.0%
TCCCCAACATGCACAAGGTT+AGG + chr8_1:8343710-8343729 Msa1176360:CDS 50.0%
TGTCAAAGCTGTGCCACCTG+CGG + chr8_1:8338310-8338329 Msa1176360:CDS 55.0%
TTCCTGTTCAGATCCGCAGG+TGG - chr8_1:8338326-8338345 None:intergenic 55.0%
GTGTTCCTGTTCAGATCCGC+AGG - chr8_1:8338329-8338348 None:intergenic 55.0%
!! TCGTGTTGGTGTCGGACACT+AGG + chr8_1:8338804-8338823 Msa1176360:intron 55.0%
! CTTTGGATGGAAGGCGTGTC+TGG - chr8_1:8339321-8339340 None:intergenic 55.0%
CTCATGTCATGGGTGGAGAG+TGG + chr8_1:8339405-8339424 Msa1176360:intron 55.0%
GTGATGAGGGATGACTGGGT+AGG + chr8_1:8339604-8339623 Msa1176360:intron 55.0%
GATGAGGGATGACTGGGTAG+GGG + chr8_1:8339606-8339625 Msa1176360:intron 55.0%
!!! GTTTTAAAAACCGGGCCGGC+TGG + chr8_1:8341019-8341038 Msa1176360:intron 55.0%
CAATTCCCAGTCTGACCAGC+CGG - chr8_1:8341037-8341056 None:intergenic 55.0%
AAGTGGTTCGACCCTGGTAC+AGG - chr8_1:8341209-8341228 None:intergenic 55.0%
! GCTCGGTGATCAACTCGGTA+AGG - chr8_1:8341541-8341560 None:intergenic 55.0%
!! TACCGAGTTGATCACCGAGC+CGG + chr8_1:8341541-8341560 Msa1176360:intron 55.0%
!! AACCGGCTCGGTGATCAACT+CGG - chr8_1:8341546-8341565 None:intergenic 55.0%
! TCTAAGGTGGCTAGGCCATG+TGG + chr8_1:8343137-8343156 Msa1176360:intron 55.0%
CTAAGGTGGCTAGGCCATGT+GGG + chr8_1:8343138-8343157 Msa1176360:intron 55.0%
TGCCACCTGCGGATCTGAAC+AGG + chr8_1:8338321-8338340 Msa1176360:CDS 60.0%
TGGTGGGAGCAGGTCGACAA+TGG + chr8_1:8340244-8340263 Msa1176360:CDS 60.0%
! CGGCTGGTCAGACTGGGAAT+TGG + chr8_1:8341035-8341054 Msa1176360:intron 60.0%
CTGGGAATTGGACCTACGGC+CGG + chr8_1:8341047-8341066 Msa1176360:intron 60.0%
AATTGGACCTACGGCCGGAC+AGG + chr8_1:8341052-8341071 Msa1176360:intron 60.0%
ATAGTGACCTGTCCGGCCGT+AGG - chr8_1:8341062-8341081 None:intergenic 60.0%
TGGTTCGACTAGTGGCCCTG+TGG + chr8_1:8341495-8341514 Msa1176360:intron 60.0%
CGACTAGTGGCCCTGTGGTT+TGG + chr8_1:8341500-8341519 Msa1176360:intron 60.0%
! ACCGGGCCGGCTGGTCAGAC+TGG + chr8_1:8341028-8341047 Msa1176360:intron 75.0%
CCCAGTCTGACCAGCCGGCC+CGG - chr8_1:8341032-8341051 None:intergenic 75.0%
! CCGGGCCGGCTGGTCAGACT+GGG + chr8_1:8341029-8341048 Msa1176360:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 8337985 8344114 8337985 ID=Msa1176360;Name=Msa1176360
chr8_1 mRNA 8337985 8344114 8337985 ID=Msa1176360-mRNA-1;Parent=Msa1176360;Name=Msa1176360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=311|1|1|1|1|1|3|355|157
chr8_1 exon 8337985 8338481 8337985 ID=Msa1176360-mRNA-1:exon:2848;Parent=Msa1176360-mRNA-1
chr8_1 exon 8340169 8340317 8340169 ID=Msa1176360-mRNA-1:exon:2849;Parent=Msa1176360-mRNA-1
chr8_1 exon 8343621 8344114 8343621 ID=Msa1176360-mRNA-1:exon:2850;Parent=Msa1176360-mRNA-1
chr8_1 five_prime_UTR 8337985 8338295 8337985 ID=Msa1176360-mRNA-1:five_prime_utr;Parent=Msa1176360-mRNA-1
chr8_1 CDS 8338296 8338481 8338296 ID=Msa1176360-mRNA-1:cds;Parent=Msa1176360-mRNA-1
chr8_1 CDS 8340169 8340317 8340169 ID=Msa1176360-mRNA-1:cds;Parent=Msa1176360-mRNA-1
chr8_1 CDS 8343621 8343759 8343621 ID=Msa1176360-mRNA-1:cds;Parent=Msa1176360-mRNA-1
chr8_1 three_prime_UTR 8343760 8344114 8343760 ID=Msa1176360-mRNA-1:three_prime_utr;Parent=Msa1176360-mRNA-1
Gene Sequence

>Msa1176360

ATGGCTAATCTGTATGTCAAAGCTGTGCCACCTGCGGATCTGAACAGGAACACAGAATGGTTTACCTATCCTGGTGTTTGGACAACATATATTCTCATCCTCTTCTTTTCATGGATCATGGTTTTGTCTGTCTTTGGTTGTTCTCCTGGGATTGCTTGGACTATTGTTAATCTCGCTCATTTTCTTGTAACATATCACTTTTTCCACTGGAAGAAAGGAACTCCATTTGCAGATGATCAGGGGATCTACAATAGATTGACATGGTGGGAGCAGGTCGACAATGGAAAGCAGCTCACTCGTAACAGGAAGTTTTTGACAGTTGTTCCTTTGGTTCTGTACTTGATAGCCTCACACACAACTGACTATGAGCATCCAATGCTGTTCTTCAACACGGTTGCCGTGATTGTGCTAGTTGTTGCGAAGTTCCCCAACATGCACAAGGTTAGGATATTCGGAATCAACGCTGATAAGTGA

Protein sequence

>Msa1176360

MANLYVKAVPPADLNRNTEWFTYPGVWTTYILILFFSWIMVLSVFGCSPGIAWTIVNLAHFLVTYHFFHWKKGTPFADDQGIYNRLTWWEQVDNGKQLTRNRKFLTVVPLVLYLIASHTTDYEHPMLFFNTVAVIVLVVAKFPNMHKVRIFGINADK*