AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1351040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351040 MtrunA17_Chr3g0133221 93.773 273 2 1 1 273 1 258 0.0 521
Msa1351040 MtrunA17_Chr8g0367701 71.667 180 51 0 93 272 90 269 1.62e-98 290
Msa1351040 MtrunA17_Chr7g0251801 47.475 198 94 3 74 270 86 274 4.03e-64 202
Msa1351040 MtrunA17_Chr2g0315771 47.030 202 102 3 75 271 25 226 3.03e-61 193
Msa1351040 MtrunA17_Chr1g0162171 39.623 159 95 1 113 270 62 220 1.18e-43 147
Msa1351040 MtrunA17_Chr6g0481891 38.994 159 96 1 113 270 38 196 1.97e-42 144
Msa1351040 MtrunA17_Chr8g0388871 37.654 162 97 2 112 270 22 182 2.41e-40 138
Msa1351040 MtrunA17_Chr1g0212091 36.413 184 107 3 89 270 43 218 3.40e-40 139
Msa1351040 MtrunA17_Chr1g0212121 35.849 159 101 1 113 270 57 215 4.66e-37 130
Msa1351040 MtrunA17_Chr1g0212171 35.625 160 102 1 112 270 59 218 9.47e-37 130
Msa1351040 MtrunA17_Chr1g0212181 35.583 163 103 2 113 273 57 219 2.84e-35 126
Msa1351040 MtrunA17_Chr1g0212111 43.396 106 59 1 166 270 49 154 3.26e-25 98.6
Msa1351040 MtrunA17_Chr1g0212131 41.071 56 33 0 215 270 6 61 5.82e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351040 AT1G28200.1 71.605 243 61 2 31 273 23 257 1.03e-122 350
Msa1351040 AT1G28200.2 71.605 243 61 2 31 273 23 257 1.03e-122 350
Msa1351040 AT2G22475.1 72.727 198 53 1 76 272 96 293 7.52e-110 320
Msa1351040 AT2G22475.2 72.603 146 39 1 76 220 96 241 1.33e-76 233
Msa1351040 AT4G40100.1 57.789 199 47 4 76 272 55 218 4.99e-73 223
Msa1351040 AT5G13200.1 40.892 269 138 6 3 266 4 256 2.21e-61 195
Msa1351040 AT4G01600.1 42.211 199 108 3 76 270 29 224 1.27e-54 176
Msa1351040 AT4G01600.3 42.135 178 101 1 95 270 8 185 8.93e-52 168
Msa1351040 AT4G01600.2 41.206 199 105 4 76 270 29 219 1.31e-50 166
Msa1351040 AT5G23350.1 34.259 216 133 4 60 270 2 213 4.91e-40 139
Msa1351040 AT5G13200.2 38.636 220 114 6 3 217 4 207 1.21e-39 137
Msa1351040 AT5G23360.1 36.875 160 98 2 113 270 47 205 1.29e-38 134
Msa1351040 AT5G23370.1 33.333 219 131 6 60 270 2 213 3.69e-38 134
Msa1351040 AT5G08350.1 33.831 201 116 4 72 270 27 212 4.18e-38 134

Find 103 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGTTGTTACTTGTTTC+TGG 0.126004 tig0012074:-36554 Msa1351040:three_prime_UTR
CCGTTGACAATCATGAATTT+TGG 0.145817 tig0012074:-36797 Msa1351040:CDS
AAATAATAATTTGACGGTTT+TGG 0.155065 tig0012074:-41627 Msa1351040:five_prime_UTR
TGAAAGATGTTCTTGGAAAA+TGG 0.239709 tig0012074:-41063 Msa1351040:CDS
AGCAAGATCTTCAGCCTTCT+TGG 0.287689 tig0012074:+41018 None:intergenic
GAATCAGAGTCTTGGGGTTT+GGG 0.291767 tig0012074:+41366 None:intergenic
ACGTCGTTTGGGTCGAGTTT+AGG 0.310396 tig0012074:+41312 None:intergenic
TTTAGGATACGGAGCGTAAT+CGG 0.313258 tig0012074:+41329 None:intergenic
GGTGGTGGTGCGACGTCGTT+TGG 0.326020 tig0012074:+41300 None:intergenic
AAGTGTCAATCAGTGCCTTC+AGG 0.328471 tig0012074:-41762 Msa1351040:five_prime_UTR
ATATTATTACATTCTAAATC+TGG 0.330201 tig0012074:-36504 Msa1351040:three_prime_UTR
TCAATTCAAACCCAAGTTGA+TGG 0.340780 tig0012074:+41517 None:intergenic
AGAATCAGAGTCTTGGGGTT+TGG 0.350975 tig0012074:+41365 None:intergenic
ATTTAAACATGATAGTTATA+TGG 0.356108 tig0012074:-36451 Msa1351040:three_prime_UTR
GATTCGGTGAAAGATGTTCT+TGG 0.357881 tig0012074:-41070 Msa1351040:CDS
TGCTACCTCTCCACCTCTGC+TGG 0.362383 tig0012074:-39951 Msa1351040:CDS
GACTCAATGGAGCTATTATA+AGG 0.381490 tig0012074:-39844 Msa1351040:intron
GCAGAAGTGGGTTCGGGAAC+TGG 0.387440 tig0012074:+41195 None:intergenic
TTAGGATACGGAGCGTAATC+GGG 0.390438 tig0012074:+41330 None:intergenic
TACTTCCTTAGTCTAGTTTG+TGG 0.390817 tig0012074:-36604 Msa1351040:three_prime_UTR
GGGTTGGCTTTGCTTGTGGA+TGG 0.392668 tig0012074:+36846 None:intergenic
CACCTCTGCTGGACCTGTCA+TGG 0.396719 tig0012074:-39940 Msa1351040:CDS
GAAAGATGTTCTTGGAAAAT+GGG 0.402168 tig0012074:-41062 Msa1351040:CDS
AGAGTCTTGGGGTTTGGGAT+TGG 0.404551 tig0012074:+41371 None:intergenic
TGCTCAGGGAACAAAAGTTC+TGG 0.404565 tig0012074:-40051 Msa1351040:CDS
ATCAACACAGACCTCATGTT+TGG 0.406142 tig0012074:+36675 None:intergenic
CTCTTAGCAGAAGTGGGTTC+GGG 0.406503 tig0012074:+41189 None:intergenic
AGAGTGAGAATCAGAGTCTT+GGG 0.416127 tig0012074:+41359 None:intergenic
ACTCTTAGCAGAAGTGGGTT+CGG 0.417854 tig0012074:+41188 None:intergenic
TACTACTCATATTGTTGACT+TGG 0.419934 tig0012074:+41454 None:intergenic
TTGTGTTTGTGTTGGTGGGT+TGG 0.423984 tig0012074:+41397 None:intergenic
TCGATTGATTTGTTGTAAGT+TGG 0.435282 tig0012074:-36478 Msa1351040:three_prime_UTR
ATTGAGTCTGGTCACCAGTC+TGG 0.437061 tig0012074:+39859 None:intergenic
GCAATCTCGCTGATACACTA+TGG 0.438686 tig0012074:-36721 Msa1351040:exon
AAGAAGGCTGAAGATCTTGC+TGG 0.439141 tig0012074:-41016 Msa1351040:CDS
GGTGTTTGTGTTTGTGTTGG+TGG 0.440766 tig0012074:+41392 None:intergenic
GGTTGGCTTTGCTTGTGGAT+GGG 0.441303 tig0012074:+36847 None:intergenic
TTCCATAAAACAGTGAAAAC+AGG 0.443896 tig0012074:-40107 Msa1351040:intron
GTGTTTGTGTTTGTGTTGGT+GGG 0.451705 tig0012074:+41393 None:intergenic
TGCTGTGGGAAGAATTGCTC+AGG 0.454151 tig0012074:-40066 Msa1351040:CDS
GGGCATGGTGGTGGCAGCAT+CGG 0.455840 tig0012074:+41248 None:intergenic
AGTTCAAAATAATAATTTGA+CGG 0.461591 tig0012074:-41633 Msa1351040:five_prime_UTR
TTCAGAGAAAACCATCAACT+TGG 0.467782 tig0012074:-41528 Msa1351040:five_prime_UTR
TATAATAGCTCCATTGAGTC+TGG 0.472016 tig0012074:+39847 None:intergenic
GTGGGTTCGGGAACTGGTGC+AGG 0.472656 tig0012074:+41201 None:intergenic
ACTACTCATATTGTTGACTT+GGG 0.480812 tig0012074:+41455 None:intergenic
GGGATTAGATTCGGCGGGCA+TGG 0.481538 tig0012074:+41233 None:intergenic
ACCTCTGCTGGACCTGTCAT+GGG 0.481952 tig0012074:-39939 Msa1351040:CDS
GTGTTGGTGGGTTGGACATG+AGG 0.489459 tig0012074:+41405 None:intergenic
ATTGGTGTTTGTGTTTGTGT+TGG 0.490015 tig0012074:+41389 None:intergenic
AGATTCGGCGGGCATGGTGG+TGG 0.492264 tig0012074:+41239 None:intergenic
CATGGTGGTGGCAGCATCGG+TGG 0.493757 tig0012074:+41251 None:intergenic
GCGCGAGATTCAGTAGCAAC+AGG 0.494862 tig0012074:+41273 None:intergenic
AGTAGGGTTGGCTTTGCTTG+TGG 0.497012 tig0012074:+36842 None:intergenic
GTGGTGGTGCGACGTCGTTT+GGG 0.498600 tig0012074:+41301 None:intergenic
CAGCTCCACAAACTAGACTA+AGG 0.505325 tig0012074:+36599 None:intergenic
ATTGTTGACTTGGGGAGGAT+CGG 0.507858 tig0012074:+41464 None:intergenic
GAGAGTGAGAATCAGAGTCT+TGG 0.511071 tig0012074:+41358 None:intergenic
AACTGGTGCAGGAGAGACAT+AGG 0.514578 tig0012074:+41212 None:intergenic
TCAGTAGCAACAGGTGGTGG+TGG 0.526626 tig0012074:+41282 None:intergenic
GAAATAACTCTTAGCAGAAG+TGG 0.530714 tig0012074:+41182 None:intergenic
GTAGCAACAGGTGGTGGTGG+TGG 0.530974 tig0012074:+41285 None:intergenic
GATTCAGTAGCAACAGGTGG+TGG 0.532264 tig0012074:+41279 None:intergenic
AGACTGGTGACCAGACTCAA+TGG 0.534492 tig0012074:-39857 Msa1351040:CDS
AGAGACATAGGGATTAGATT+CGG 0.541864 tig0012074:+41224 None:intergenic
TTTGGGTCGAGTTTAGGATA+CGG 0.542371 tig0012074:+41318 None:intergenic
TAGCCTAACCTCTGCCCTGA+AGG 0.542482 tig0012074:+41747 None:intergenic
CATGACAGGTCCAGCAGAGG+TGG 0.545232 tig0012074:+39941 None:intergenic
CTCATATTGTTGACTTGGGG+AGG 0.551649 tig0012074:+41459 None:intergenic
ACTGCTCGCAGCTGATGCAA+TGG 0.553859 tig0012074:+36873 None:intergenic
TCACCAGTCTGGTAAGAAAG+TGG 0.556592 tig0012074:+39870 None:intergenic
AGTGTCAATCAGTGCCTTCA+GGG 0.563272 tig0012074:-41761 Msa1351040:five_prime_UTR
TGGACATGAGGTTGAACTTG+AGG 0.563584 tig0012074:+41417 None:intergenic
AACCCACTTTCTTACCAGAC+TGG 0.563921 tig0012074:-39873 Msa1351040:CDS
GTCAACAATATGAGTAGTAG+TGG 0.564010 tig0012074:-41450 Msa1351040:exon
TCAGAGAAAACCATCAACTT+GGG 0.565702 tig0012074:-41527 Msa1351040:five_prime_UTR
CCAAAATTCATGATTGTCAA+CGG 0.566250 tig0012074:+36797 None:intergenic
ACATAGGGATTAGATTCGGC+GGG 0.570583 tig0012074:+41228 None:intergenic
TAGGATACGGAGCGTAATCG+GGG 0.571711 tig0012074:+41331 None:intergenic
AATCAGTGCCTTCAGGGCAG+AGG 0.572910 tig0012074:-41755 Msa1351040:five_prime_UTR
GTGCCTTCAGGGCAGAGGTT+AGG 0.573375 tig0012074:-41750 Msa1351040:five_prime_UTR
ACAGCAGCATCAGCAAAACT+AGG 0.577655 tig0012074:+40083 None:intergenic
AAATACAAGACTCCCATGAC+AGG 0.580237 tig0012074:+39927 None:intergenic
GACATAGGGATTAGATTCGG+CGG 0.580305 tig0012074:+41227 None:intergenic
CAGGTCCAGCAGAGGTGGAG+AGG 0.582547 tig0012074:+39946 None:intergenic
ATTAGATTCGGCGGGCATGG+TGG 0.585883 tig0012074:+41236 None:intergenic
TTCTCTGAAACGTGAATACG+TGG 0.591351 tig0012074:+41542 None:intergenic
AGCTGCTGAAGCTACCAAGA+AGG 0.592291 tig0012074:-41032 Msa1351040:CDS
AAAGATGTTCTTGGAAAATG+GGG 0.592681 tig0012074:-41061 Msa1351040:CDS
AAATAACTCTTAGCAGAAGT+GGG 0.592905 tig0012074:+41183 None:intergenic
CACCAGTCTGGTAAGAAAGT+GGG 0.607437 tig0012074:+39871 None:intergenic
CTACTCATATTGTTGACTTG+GGG 0.609204 tig0012074:+41456 None:intergenic
GGAACAAAAGTTCTGGCAGA+AGG 0.613260 tig0012074:-40044 Msa1351040:CDS
ACTGGTGCAGGAGAGACATA+GGG 0.634538 tig0012074:+41213 None:intergenic
TCCCATGACAGGTCCAGCAG+AGG 0.644056 tig0012074:+39938 None:intergenic
GAGTGAGAATCAGAGTCTTG+GGG 0.647869 tig0012074:+41360 None:intergenic
ACAAAAGTTCTGGCAGAAGG+TGG 0.648034 tig0012074:-40041 Msa1351040:CDS
AAGATCTTGCTGGAAACATG+TGG 0.657196 tig0012074:-41006 Msa1351040:CDS
AGGATACGGAGCGTAATCGG+GGG 0.674476 tig0012074:+41332 None:intergenic
CGAGATTCAGTAGCAACAGG+TGG 0.675679 tig0012074:+41276 None:intergenic
ACATGAGGTTGAACTTGAGG+AGG 0.679456 tig0012074:+41420 None:intergenic
CATGTAGTATACCAAACATG+AGG 0.682970 tig0012074:-36686 Msa1351040:three_prime_UTR
GCTGTGGGAAGAATTGCTCA+GGG 0.687709 tig0012074:-40065 Msa1351040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATATATTAAATTTT+AGG - tig0012074:40014-40033 Msa1351040:CDS 0.0%
!!! AAATAATATATTAAATTTTA+GGG - tig0012074:40015-40034 Msa1351040:CDS 0.0%
!!! AAAATAATATATTAAATTTT+AGG - tig0012074:40014-40033 Msa1351040:CDS 0.0%
!!! AAATAATATATTAAATTTTA+GGG - tig0012074:40015-40034 Msa1351040:CDS 0.0%
!!! ATTTTAATTAATTTTATAGC+TGG - tig0012074:38004-38023 Msa1351040:intron 10.0%
!!! TACATATTTATTTTTTTTGA+AGG - tig0012074:39021-39040 Msa1351040:intron 10.0%
!! AAAAAAAGTTAAAAAAGCAA+CGG - tig0012074:36514-36533 Msa1351040:three_prime_UTR 15.0%
!! AGTTCAAAATAATAATTTGA+CGG - tig0012074:36569-36588 Msa1351040:three_prime_UTR 15.0%
!! CTTAAATGAATTTGAATAAT+TGG + tig0012074:37260-37279 None:intergenic 15.0%
!!! TATTCATAAAATTTTGCTAT+AGG + tig0012074:38543-38562 None:intergenic 15.0%
!!! TTTAATTAACATGAGATTTT+TGG - tig0012074:38717-38736 Msa1351040:intron 15.0%
!! ATTCATTATTTGAACAAAAT+GGG - tig0012074:39230-39249 Msa1351040:intron 15.0%
!! ACAAAAGGTTATAAAATTTA+GGG + tig0012074:39574-39593 None:intergenic 15.0%
!! AACAAAAGGTTATAAAATTT+AGG + tig0012074:39575-39594 None:intergenic 15.0%
!! ACAAAAGGTTATAAAATTTA+GGG + tig0012074:39574-39593 None:intergenic 15.0%
!! AACAAAAGGTTATAAAATTT+AGG + tig0012074:39575-39594 None:intergenic 15.0%
!! ACAAAAGGTTATAAAATTTA+GGG + tig0012074:39574-39593 None:intergenic 15.0%
!! AACAAAAGGTTATAAAATTT+AGG + tig0012074:39575-39594 None:intergenic 15.0%
!! TAATCTATTAAAAATCATAC+GGG + tig0012074:41128-41147 None:intergenic 15.0%
!! GTAATCTATTAAAAATCATA+CGG + tig0012074:41129-41148 None:intergenic 15.0%
!! ATATTATTACATTCTAAATC+TGG - tig0012074:41698-41717 Msa1351040:five_prime_UTR 15.0%
!! ATTTAAACATGATAGTTATA+TGG - tig0012074:41751-41770 Msa1351040:five_prime_UTR 15.0%
!!! AAATAATAATTTGACGGTTT+TGG - tig0012074:36575-36594 Msa1351040:three_prime_UTR 20.0%
!!! AATAATAATTTGACGGTTTT+GGG - tig0012074:36576-36595 Msa1351040:three_prime_UTR 20.0%
!!! CATTTTGATATTTGAATTCA+AGG - tig0012074:36631-36650 Msa1351040:three_prime_UTR 20.0%
!! TAATTGGAAGTAAAAGAATT+AGG + tig0012074:37244-37263 None:intergenic 20.0%
!! GCTATTCAATAAATATTTCT+TGG - tig0012074:37279-37298 Msa1351040:intron 20.0%
!! AATTAGAATAGATTGAATGA+AGG - tig0012074:37759-37778 Msa1351040:intron 20.0%
!! ATTAGAATAGATTGAATGAA+GGG - tig0012074:37760-37779 Msa1351040:intron 20.0%
!!! TAATCTCTACACTTTTTTAA+TGG + tig0012074:37839-37858 None:intergenic 20.0%
!!! ATTAATTTTATAGCTGGAAA+TGG - tig0012074:38010-38029 Msa1351040:intron 20.0%
!! TTGTTCTTTAATAACTGATT+TGG - tig0012074:38415-38434 Msa1351040:intron 20.0%
!! TAATCATCCAAAATAATTTC+AGG + tig0012074:38762-38781 None:intergenic 20.0%
!! TCTTAAGTAATATCATTGTT+TGG - tig0012074:38792-38811 Msa1351040:intron 20.0%
!!! ATAGATTTTAGATGTATCTA+GGG - tig0012074:38964-38983 Msa1351040:intron 20.0%
!! TAATTCCTCGAAAAAAATAT+TGG + tig0012074:39003-39022 None:intergenic 20.0%
!! GATTCATTATTTGAACAAAA+TGG - tig0012074:39229-39248 Msa1351040:intron 20.0%
!! AATTAAAAAAATACAGAGGT+TGG + tig0012074:39358-39377 None:intergenic 20.0%
!!! AACCTCTGTATTTTTTTAAT+TGG - tig0012074:39357-39376 Msa1351040:intron 20.0%
!!! TACTTTTAATCACAACAAAA+AGG + tig0012074:39853-39872 None:intergenic 20.0%
!! CAAGCAATTTATATTAAGAT+TGG - tig0012074:39920-39939 Msa1351040:CDS 20.0%
!!! AATATATTAAATTTTAGGGG+TGG - tig0012074:40019-40038 Msa1351040:CDS 20.0%
!!! TACTTTTAATCACAACAAAA+AGG + tig0012074:39853-39872 None:intergenic 20.0%
!! CAAGCAATTTATATTAAGAT+TGG - tig0012074:39920-39939 Msa1351040:CDS 20.0%
!! ATAGAATATTGTATTGAGAA+AGG - tig0012074:39960-39979 Msa1351040:CDS 20.0%
!! AGATATATTGTATTGAGAAA+TGG - tig0012074:40670-40689 Msa1351040:intron 20.0%
!!! GTCATATTTTTTCTATTGTT+TGG - tig0012074:41260-41279 Msa1351040:CDS 20.0%
!!! TCTGTATAAATTTTTCAGTA+GGG + tig0012074:41379-41398 None:intergenic 20.0%
!!! ATCTGTATAAATTTTTCAGT+AGG + tig0012074:41380-41399 None:intergenic 20.0%
!!! AATCATGAATTTTGGTTTAT+GGG - tig0012074:41413-41432 Msa1351040:CDS 20.0%
!! TAAAGTATCTGCAAAATCAA+AGG + tig0012074:37112-37131 None:intergenic 25.0%
!! TTTTGCAGATACTTTAGATT+CGG - tig0012074:37116-37135 Msa1351040:intron 25.0%
!! ATTTTTACTTTGTATGTGCA+TGG - tig0012074:37373-37392 Msa1351040:intron 25.0%
!!! CACTTATTTTATTCTAGTGT+TGG + tig0012074:37578-37597 None:intergenic 25.0%
! CTAATTACGACAAAATTTAG+AGG + tig0012074:37745-37764 None:intergenic 25.0%
!! GGTTTCTCTTATAATTTTCT+AGG + tig0012074:37818-37837 None:intergenic 25.0%
! TCAGTTATTAAAGAACAAAG+CGG + tig0012074:38413-38432 None:intergenic 25.0%
!! TGATTATTTCTCAATACTAG+AGG - tig0012074:38477-38496 Msa1351040:intron 25.0%
! ATTAAAAAATCCTCAAATGC+TGG + tig0012074:38703-38722 None:intergenic 25.0%
! ATATTACTTAAGATCCCTAA+GGG + tig0012074:38785-38804 None:intergenic 25.0%
!! CATCTAAAATCTATGAGTAT+TGG + tig0012074:38958-38977 None:intergenic 25.0%
!! CATAGATTTTAGATGTATCT+AGG - tig0012074:38963-38982 Msa1351040:intron 25.0%
!!! TTTTTTTGAAGGATTTTTCG+AGG - tig0012074:39032-39051 Msa1351040:intron 25.0%
!! ATTTTGTCTAGAAAAGATGA+TGG - tig0012074:39281-39300 Msa1351040:intron 25.0%
!!! CTCTGTATTTTTTTAATTGG+CGG - tig0012074:39360-39379 Msa1351040:intron 25.0%
!! ACATAATTCTTTTGATGTTG+AGG - tig0012074:40995-41014 Msa1351040:intron 25.0%
!! CATAATTCTTTTGATGTTGA+GGG - tig0012074:40996-41015 Msa1351040:intron 25.0%
! TTGAGAATAAATGTCATCTT+TGG - tig0012074:41157-41176 Msa1351040:intron 25.0%
!!! TATAAATTTTTCAGTAGGGT+TGG + tig0012074:41375-41394 None:intergenic 25.0%
!!! CAATCATGAATTTTGGTTTA+TGG - tig0012074:41412-41431 Msa1351040:CDS 25.0%
!!! TTTCATGTTTTTGTGAAATG+AGG + tig0012074:41560-41579 None:intergenic 25.0%
!! ACTACTCATATTGTTGACTT+GGG + tig0012074:36750-36769 None:intergenic 30.0%
! TACTACTCATATTGTTGACT+TGG + tig0012074:36751-36770 None:intergenic 30.0%
AAATAACTCTTAGCAGAAGT+GGG + tig0012074:37022-37041 None:intergenic 30.0%
TATCTGCAAAATCAAAGGAT+AGG + tig0012074:37107-37126 None:intergenic 30.0%
TGAAAGATGTTCTTGGAAAA+TGG - tig0012074:37139-37158 Msa1351040:intron 30.0%
GAAAGATGTTCTTGGAAAAT+GGG - tig0012074:37140-37159 Msa1351040:intron 30.0%
AAAGATGTTCTTGGAAAATG+GGG - tig0012074:37141-37160 Msa1351040:intron 30.0%
CAGAAAATATGCTAGAAACT+AGG - tig0012074:37682-37701 Msa1351040:intron 30.0%
AAGTGTAGAGATTAATGAGT+TGG - tig0012074:37845-37864 Msa1351040:intron 30.0%
! AGAGATTAATGAGTTGGATA+AGG - tig0012074:37851-37870 Msa1351040:intron 30.0%
AGAAAACACAGAAAGTAAAC+TGG - tig0012074:38037-38056 Msa1351040:intron 30.0%
GTCAAAATAGCTCAAATGAA+TGG + tig0012074:38074-38093 None:intergenic 30.0%
TTCCATAAAACAGTGAAAAC+AGG - tig0012074:38095-38114 Msa1351040:intron 30.0%
GTAATGCAGTATACATATCA+TGG + tig0012074:38443-38462 None:intergenic 30.0%
AATGACTCCAACTAAATTTC+CGG + tig0012074:38598-38617 None:intergenic 30.0%
! ATTGATATTTGAGGTTCCAA+GGG + tig0012074:38653-38672 None:intergenic 30.0%
ACTGACATGATTGATATTTG+AGG + tig0012074:38662-38681 None:intergenic 30.0%
!!! GATTTTTGGAATTCGAAGAA+AGG - tig0012074:38731-38750 Msa1351040:intron 30.0%
!! TATTTTGGATGATTACCCTT+AGG - tig0012074:38767-38786 Msa1351040:intron 30.0%
! ATTTTGGATGATTACCCTTA+GGG - tig0012074:38768-38787 Msa1351040:intron 30.0%
GATATTACTTAAGATCCCTA+AGG + tig0012074:38786-38805 None:intergenic 30.0%
! AAATCAAGGATTCCCTTTTA+CGG - tig0012074:38849-38868 Msa1351040:intron 30.0%
TAACATGCAATACCGTAAAA+GGG + tig0012074:38864-38883 None:intergenic 30.0%
! TCCAAATTTGAAGTATGAGT+GGG - tig0012074:38901-38920 Msa1351040:intron 30.0%
TATTGGACATGTACTAGTAT+CGG + tig0012074:38941-38960 None:intergenic 30.0%
! ATTTTAGATGTATCTAGGGA+AGG - tig0012074:38968-38987 Msa1351040:intron 30.0%
! TTTTAGATGTATCTAGGGAA+GGG - tig0012074:38969-38988 Msa1351040:intron 30.0%
!!! ATGCTCCAATATTTTTTTCG+AGG - tig0012074:38995-39014 Msa1351040:intron 30.0%
! TTGGAGTAGTGTTTAAAATG+TGG + tig0012074:39070-39089 None:intergenic 30.0%
AAACACTACTCCAATACAAT+TGG - tig0012074:39076-39095 Msa1351040:intron 30.0%
AACACTACTCCAATACAATT+GGG - tig0012074:39077-39096 Msa1351040:intron 30.0%
! CTTTTCTAGACAAAATACAG+AGG + tig0012074:39277-39296 None:intergenic 30.0%
AACCAACAATATCATCAACT+GGG + tig0012074:39327-39346 None:intergenic 30.0%
AAACCAACAATATCATCAAC+TGG + tig0012074:39328-39347 None:intergenic 30.0%
CGCCAATTAAAAAAATACAG+AGG + tig0012074:39362-39381 None:intergenic 30.0%
! TAACGTAAACCTACTACTTT+TGG - tig0012074:39495-39514 Msa1351040:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + tig0012074:39507-39526 None:intergenic 30.0%
! AACCTTTTGTTGATGTAACT+AGG - tig0012074:39584-39603 Msa1351040:intron 30.0%
ACTTTGAACCAAACCAATAT+CGG + tig0012074:39667-39686 None:intergenic 30.0%
CATCAAAAGAATTATGTGTC+TGG + tig0012074:39714-39733 None:intergenic 30.0%
! ACATAATTCTTTTGATGTCG+AGG - tig0012074:39717-39736 Msa1351040:intron 30.0%
! CATAATTCTTTTGATGTCGA+GGG - tig0012074:39718-39737 Msa1351040:intron 30.0%
! TAACGTAAACCTACTACTTT+TGG - tig0012074:39495-39514 Msa1351040:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + tig0012074:39507-39526 None:intergenic 30.0%
! AACCTTTTGTTGATGTAACT+AGG - tig0012074:39584-39603 Msa1351040:intron 30.0%
ACTTTGAACCAAACCAATAT+CGG + tig0012074:39667-39686 None:intergenic 30.0%
CATCAAAAGAATTATGTGTC+TGG + tig0012074:39714-39733 None:intergenic 30.0%
! ACATAATTCTTTTGATGTCG+AGG - tig0012074:39717-39736 Msa1351040:intron 30.0%
! CATAATTCTTTTGATGTCGA+GGG - tig0012074:39718-39737 Msa1351040:intron 30.0%
TATTGAGAAATGGTAAAACG+TGG - tig0012074:40680-40699 Msa1351040:intron 30.0%
! AAACGTAAACCTACTACTTT+TGG - tig0012074:40741-40760 Msa1351040:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + tig0012074:39507-39526 None:intergenic 30.0%
! AACCTTTTGTTGATGTAACT+AGG - tig0012074:39584-39603 Msa1351040:intron 30.0%
CATATATGTTTCCCCAATAT+TGG - tig0012074:40929-40948 Msa1351040:intron 30.0%
TTTGAACCAAACCAATATTG+GGG + tig0012074:40943-40962 None:intergenic 30.0%
CTTTGAACCAAACCAATATT+GGG + tig0012074:40944-40963 None:intergenic 30.0%
ACTTTGAACCAAACCAATAT+TGG + tig0012074:39667-39686 None:intergenic 30.0%
CATCAAAAGAATTATGTGTC+TGG + tig0012074:39714-39733 None:intergenic 30.0%
!! TTTTGATGTTGAGGGTATAA+AGG - tig0012074:41004-41023 Msa1351040:CDS 30.0%
AGGATACAATGAGTAAGAAT+GGG + tig0012074:41075-41094 None:intergenic 30.0%
GATTAGTGACTACACTTATA+TGG - tig0012074:41185-41204 Msa1351040:intron 30.0%
! AGCTTTTCATCTTATGCATT+AGG - tig0012074:41298-41317 Msa1351040:CDS 30.0%
! TTTTCATCTTATGCATTAGG+TGG - tig0012074:41301-41320 Msa1351040:CDS 30.0%
CCAAAATTCATGATTGTCAA+CGG + tig0012074:41408-41427 None:intergenic 30.0%
!! TCGATTGATTTGTTGTAAGT+TGG - tig0012074:41724-41743 Msa1351040:five_prime_UTR 30.0%
TTCAGAGAAAACCATCAACT+TGG - tig0012074:36674-36693 Msa1351040:three_prime_UTR 35.0%
TCAGAGAAAACCATCAACTT+GGG - tig0012074:36675-36694 Msa1351040:three_prime_UTR 35.0%
! TCAATTCAAACCCAAGTTGA+TGG + tig0012074:36688-36707 None:intergenic 35.0%
!! CTACTCATATTGTTGACTTG+GGG + tig0012074:36749-36768 None:intergenic 35.0%
GTCAACAATATGAGTAGTAG+TGG - tig0012074:36752-36771 Msa1351040:CDS 35.0%
! ATTGGTGTTTGTGTTTGTGT+TGG + tig0012074:36816-36835 None:intergenic 35.0%
AGAGACATAGGGATTAGATT+CGG + tig0012074:36981-37000 None:intergenic 35.0%
GAAATAACTCTTAGCAGAAG+TGG + tig0012074:37023-37042 None:intergenic 35.0%
TTGTGATCAAGAGAAGATAG+AGG - tig0012074:37428-37447 Msa1351040:intron 35.0%
!! TTGTATGTGAAGGAAGTGTT+GGG - tig0012074:37542-37561 Msa1351040:intron 35.0%
AAATAAGTGTAGCAGAGATG+AGG - tig0012074:37589-37608 Msa1351040:intron 35.0%
TAGAATTAGAGAGAGAGTTG+AGG - tig0012074:37647-37666 Msa1351040:intron 35.0%
ATATGCTAGAAACTAGGCTT+AGG - tig0012074:37688-37707 Msa1351040:intron 35.0%
! AAGCTTTATCCAATCAAGTG+GGG + tig0012074:37925-37944 None:intergenic 35.0%
! CAAGCTTTATCCAATCAAGT+GGG + tig0012074:37926-37945 None:intergenic 35.0%
! GACCTGTTTTCACTGTTTTA+TGG + tig0012074:38100-38119 None:intergenic 35.0%
!!! GTTTTAAGAAGTTGTTCCTC+TGG + tig0012074:38224-38243 None:intergenic 35.0%
TATAATAGCTCCATTGAGTC+TGG + tig0012074:38358-38377 None:intergenic 35.0%
GACTCAATGGAGCTATTATA+AGG - tig0012074:38358-38377 Msa1351040:intron 35.0%
ATGACTCCAACTAAATTTCC+GGG + tig0012074:38597-38616 None:intergenic 35.0%
! GATTGATATTTGAGGTTCCA+AGG + tig0012074:38654-38673 None:intergenic 35.0%
ACTAATATCACCAGCATTTG+AGG - tig0012074:38690-38709 Msa1351040:intron 35.0%
! GGTGCTTCCTGAAATTATTT+TGG - tig0012074:38752-38771 Msa1351040:intron 35.0%
AAGGCAACATAACTGAACAT+GGG + tig0012074:38824-38843 None:intergenic 35.0%
AAAGGCAACATAACTGAACA+TGG + tig0012074:38825-38844 None:intergenic 35.0%
TGTTGCCTTTCTTGAAATCA+AGG - tig0012074:38835-38854 Msa1351040:intron 35.0%
GGAATCCTTGATTTCAAGAA+AGG + tig0012074:38843-38862 None:intergenic 35.0%
GTAACATGCAATACCGTAAA+AGG + tig0012074:38865-38884 None:intergenic 35.0%
! ACTTCAAATTTGGAGTACCT+GGG + tig0012074:38895-38914 None:intergenic 35.0%
! TACTTCAAATTTGGAGTACC+TGG + tig0012074:38896-38915 None:intergenic 35.0%
! CTCCAAATTTGAAGTATGAG+TGG - tig0012074:38900-38919 Msa1351040:intron 35.0%
ACCCACTCATACTTCAAATT+TGG + tig0012074:38905-38924 None:intergenic 35.0%
! ACATGTACTAGTATCGGATA+CGG + tig0012074:38935-38954 None:intergenic 35.0%
! GAGTAGTGTTTAAAATGTGG+CGG + tig0012074:39067-39086 None:intergenic 35.0%
ATGATGCATCCCAATTGTAT+TGG + tig0012074:39089-39108 None:intergenic 35.0%
!!! GAGCAAGTAGCTGTTTTTTT+TGG + tig0012074:39152-39171 None:intergenic 35.0%
! TTGCTCAACCTTTTTCTTCA+TGG - tig0012074:39166-39185 Msa1351040:intron 35.0%
TCACAACACCATGAAGAAAA+AGG + tig0012074:39177-39196 None:intergenic 35.0%
TCTAGACAAAATACAGAGGT+TGG + tig0012074:39273-39292 None:intergenic 35.0%
! CGTGATAAACTAAGAAGCAT+AGG - tig0012074:39391-39410 Msa1351040:intron 35.0%
AGCAAAGGCTTCTCTTAAAT+AGG - tig0012074:39425-39444 Msa1351040:intron 35.0%
AGCCTAGTTACATCAACAAA+AGG + tig0012074:39589-39608 None:intergenic 35.0%
AAGGAACTCTTCAAAACTCA+GGG + tig0012074:39627-39646 None:intergenic 35.0%
TAAGGAACTCTTCAAAACTC+AGG + tig0012074:39628-39647 None:intergenic 35.0%
GGGGAAACATATATGAACTA+AGG + tig0012074:39646-39665 None:intergenic 35.0%
CATATATGTTTCCCCGATAT+TGG - tig0012074:39651-39670 Msa1351040:intron 35.0%
TTTGAACCAAACCAATATCG+GGG + tig0012074:39665-39684 None:intergenic 35.0%
CTTTGAACCAAACCAATATC+GGG + tig0012074:39666-39685 None:intergenic 35.0%
GCAAGAATATGATAGGGATT+AGG - tig0012074:39812-39831 Msa1351040:intron 35.0%
AGCCTAGTTACATCAACAAA+AGG + tig0012074:39589-39608 None:intergenic 35.0%
AAGGAACTCTTCAAAACTCA+GGG + tig0012074:39627-39646 None:intergenic 35.0%
TAAGGAACTCTTCAAAACTC+AGG + tig0012074:39628-39647 None:intergenic 35.0%
GGGGAAACATATATGAACTA+AGG + tig0012074:39646-39665 None:intergenic 35.0%
CATATATGTTTCCCCGATAT+TGG - tig0012074:39651-39670 Msa1351040:intron 35.0%
TTTGAACCAAACCAATATCG+GGG + tig0012074:39665-39684 None:intergenic 35.0%
CTTTGAACCAAACCAATATC+GGG + tig0012074:39666-39685 None:intergenic 35.0%
GCAAGAATATGATAGGGATT+AGG - tig0012074:39812-39831 Msa1351040:intron 35.0%
AGCCTAGTTACATCAACAAA+AGG + tig0012074:39589-39608 None:intergenic 35.0%
AAGGAACTCCTAAAAACTCA+GGG + tig0012074:40871-40890 None:intergenic 35.0%
GGGGAAACATATATGAACTA+AGG + tig0012074:39646-39665 None:intergenic 35.0%
! ATGTTTCCCCAATATTGGTT+TGG - tig0012074:40934-40953 Msa1351040:intron 35.0%
CAGGATACAATGAGTAAGAA+TGG + tig0012074:41076-41095 None:intergenic 35.0%
ACTCATTGTATCCTGAATTC+TGG - tig0012074:41081-41100 Msa1351040:CDS 35.0%
CTCTTTAACTACCAGAATTC+AGG + tig0012074:41095-41114 None:intergenic 35.0%
! CCGTTGACAATCATGAATTT+TGG - tig0012074:41405-41424 Msa1351040:CDS 35.0%
CATGTAGTATACCAAACATG+AGG - tig0012074:41516-41535 Msa1351040:five_prime_UTR 35.0%
! TACTTCCTTAGTCTAGTTTG+TGG - tig0012074:41598-41617 Msa1351040:five_prime_UTR 35.0%
!!! GAGCTGTTTTAGTATTGTGA+TGG - tig0012074:41620-41639 Msa1351040:five_prime_UTR 35.0%
! CATTCGTTGTTACTTGTTTC+TGG - tig0012074:41648-41667 Msa1351040:five_prime_UTR 35.0%
!! TTCTCTGAAACGTGAATACG+TGG + tig0012074:36663-36682 None:intergenic 40.0%
! GTGTTTGTGTTTGTGTTGGT+GGG + tig0012074:36812-36831 None:intergenic 40.0%
AGAGTGAGAATCAGAGTCTT+GGG + tig0012074:36846-36865 None:intergenic 40.0%
! TTTAGGATACGGAGCGTAAT+CGG + tig0012074:36876-36895 None:intergenic 40.0%
! TTTGGGTCGAGTTTAGGATA+CGG + tig0012074:36887-36906 None:intergenic 40.0%
!! GATTCGGTGAAAGATGTTCT+TGG - tig0012074:37132-37151 Msa1351040:intron 40.0%
AAGATCTTGCTGGAAACATG+TGG - tig0012074:37196-37215 Msa1351040:intron 40.0%
TTACTTTGTATGTGCATGGC+TGG - tig0012074:37377-37396 Msa1351040:intron 40.0%
TACTTTGTATGTGCATGGCT+GGG - tig0012074:37378-37397 Msa1351040:intron 40.0%
AAGATAGAGGCCAATTAGAG+AGG - tig0012074:37441-37460 Msa1351040:intron 40.0%
GCAAACACATCCTCTCTAAT+TGG + tig0012074:37454-37473 None:intergenic 40.0%
AGAGGATGTGTTTGCATTTC+TGG - tig0012074:37459-37478 Msa1351040:intron 40.0%
! GTTGTATGTGAAGGAAGTGT+TGG - tig0012074:37541-37560 Msa1351040:intron 40.0%
AGGATCATGTGTTCAATGTG+TGG - tig0012074:37609-37628 Msa1351040:intron 40.0%
TTTATCCAATCAAGTGGGGT+AGG + tig0012074:37921-37940 None:intergenic 40.0%
! CCAAGCTTTATCCAATCAAG+TGG + tig0012074:37927-37946 None:intergenic 40.0%
CCACTTGATTGGATAAAGCT+TGG - tig0012074:37924-37943 Msa1351040:intron 40.0%
!!! AACTTTTGAGACTGTACCAG+AGG - tig0012074:38205-38224 Msa1351040:intron 40.0%
AAATACAAGACTCCCATGAC+AGG + tig0012074:38278-38297 None:intergenic 40.0%
AACAAAGCGGTAACAAGCAA+AGG + tig0012074:38400-38419 None:intergenic 40.0%
AAATTTCCGGGACACAAGTT+GGG + tig0012074:38585-38604 None:intergenic 40.0%
TAAATTTCCGGGACACAAGT+TGG + tig0012074:38586-38605 None:intergenic 40.0%
TTGTGTCCCGGAAATTTAGT+TGG - tig0012074:38588-38607 Msa1351040:intron 40.0%
AAAATCACACTCTCTTCCCT+TGG - tig0012074:38634-38653 Msa1351040:intron 40.0%
GCTGGTGATATTAGTCGTTA+AGG + tig0012074:38685-38704 None:intergenic 40.0%
TGGTAGAGAAAGACTGTACA+AGG + tig0012074:39132-39151 None:intergenic 40.0%
!! TTCTTCATGGTGTTGTGAGA+TGG - tig0012074:39179-39198 Msa1351040:intron 40.0%
!! TCTTCATGGTGTTGTGAGAT+GGG - tig0012074:39180-39199 Msa1351040:intron 40.0%
!! GACCCAGTTGATGATATTGT+TGG - tig0012074:39322-39341 Msa1351040:intron 40.0%
TAGGCAACTGAATAGAGCAA+AGG - tig0012074:39410-39429 Msa1351040:intron 40.0%
! ATGTTTCCCCGATATTGGTT+TGG - tig0012074:39656-39675 Msa1351040:intron 40.0%
ATTCTTGCAAGATGTGTGTG+AGG - tig0012074:39749-39768 Msa1351040:intron 40.0%
TTCTTGCAAGATGTGTGTGA+GGG - tig0012074:39750-39769 Msa1351040:intron 40.0%
! ATGTTTCCCCGATATTGGTT+TGG - tig0012074:39656-39675 Msa1351040:intron 40.0%
TTCTTGCAAGATGTGTGTGA+AGG - tig0012074:39750-39769 Msa1351040:intron 40.0%
TCTTGCAAGATGTGTGTGAA+GGG - tig0012074:40340-40359 Msa1351040:intron 40.0%
CAAGGAACTCCTAAAAACTC+AGG + tig0012074:40872-40891 None:intergenic 40.0%
GAATTTGAGAGAGAGATGCA+AGG + tig0012074:40890-40909 None:intergenic 40.0%
! ATGTTGAGGGTATAAAGGAG+TGG - tig0012074:41009-41028 Msa1351040:CDS 40.0%
AAAGGAGTGGAAGCTAACTA+AGG - tig0012074:41022-41041 Msa1351040:CDS 40.0%
GACTACACTTATATGGTGTG+TGG - tig0012074:41192-41211 Msa1351040:CDS 40.0%
ATCAACACAGACCTCATGTT+TGG + tig0012074:41530-41549 None:intergenic 40.0%
AAGTGTCAATCAGTGCCTTC+AGG - tig0012074:36440-36459 Msa1351040:three_prime_UTR 45.0%
AGTGTCAATCAGTGCCTTCA+GGG - tig0012074:36441-36460 Msa1351040:three_prime_UTR 45.0%
!! ATTGTTGACTTGGGGAGGAT+CGG + tig0012074:36741-36760 None:intergenic 45.0%
!! CTCATATTGTTGACTTGGGG+AGG + tig0012074:36746-36765 None:intergenic 45.0%
ACATGAGGTTGAACTTGAGG+AGG + tig0012074:36785-36804 None:intergenic 45.0%
TGGACATGAGGTTGAACTTG+AGG + tig0012074:36788-36807 None:intergenic 45.0%
! TTGTGTTTGTGTTGGTGGGT+TGG + tig0012074:36808-36827 None:intergenic 45.0%
GGTGTTTGTGTTTGTGTTGG+TGG + tig0012074:36813-36832 None:intergenic 45.0%
GAATCAGAGTCTTGGGGTTT+GGG + tig0012074:36839-36858 None:intergenic 45.0%
AGAATCAGAGTCTTGGGGTT+TGG + tig0012074:36840-36859 None:intergenic 45.0%
GAGTGAGAATCAGAGTCTTG+GGG + tig0012074:36845-36864 None:intergenic 45.0%
GAGAGTGAGAATCAGAGTCT+TGG + tig0012074:36847-36866 None:intergenic 45.0%
TTAGGATACGGAGCGTAATC+GGG + tig0012074:36875-36894 None:intergenic 45.0%
ACATAGGGATTAGATTCGGC+GGG + tig0012074:36977-36996 None:intergenic 45.0%
GACATAGGGATTAGATTCGG+CGG + tig0012074:36978-36997 None:intergenic 45.0%
! ACTCTTAGCAGAAGTGGGTT+CGG + tig0012074:37017-37036 None:intergenic 45.0%
AGCAAGATCTTCAGCCTTCT+TGG + tig0012074:37187-37206 None:intergenic 45.0%
AAGAAGGCTGAAGATCTTGC+TGG - tig0012074:37186-37205 Msa1351040:intron 45.0%
ACTTTGTATGTGCATGGCTG+GGG - tig0012074:37379-37398 Msa1351040:intron 45.0%
ACCTGCGATGTTGTATGTGA+AGG - tig0012074:37532-37551 Msa1351040:intron 45.0%
TCCTTCACATACAACATCGC+AGG + tig0012074:37536-37555 None:intergenic 45.0%
GAAACTAGGCTTAGGTGCTT+TGG - tig0012074:37696-37715 Msa1351040:intron 45.0%
ACAGCAGCATCAGCAAAACT+AGG + tig0012074:38122-38141 None:intergenic 45.0%
!! TAGTTTTGCTGATGCTGCTG+TGG - tig0012074:38121-38140 Msa1351040:intron 45.0%
! AGTTTTGCTGATGCTGCTGT+GGG - tig0012074:38122-38141 Msa1351040:intron 45.0%
TGCTCAGGGAACAAAAGTTC+TGG - tig0012074:38151-38170 Msa1351040:intron 45.0%
! GGAACAAAAGTTCTGGCAGA+AGG - tig0012074:38158-38177 Msa1351040:intron 45.0%
! ACAAAAGTTCTGGCAGAAGG+TGG - tig0012074:38161-38180 Msa1351040:intron 45.0%
AACCCACTTTCTTACCAGAC+TGG - tig0012074:38329-38348 Msa1351040:intron 45.0%
CACCAGTCTGGTAAGAAAGT+GGG + tig0012074:38334-38353 None:intergenic 45.0%
TCACCAGTCTGGTAAGAAAG+TGG + tig0012074:38335-38354 None:intergenic 45.0%
AATTTCCGGGACACAAGTTG+GGG + tig0012074:38584-38603 None:intergenic 45.0%
TGCATGTTACCTATGAACCC+AGG - tig0012074:38875-38894 Msa1351040:intron 45.0%
! TTTGGAGTACCTGGGTTCAT+AGG + tig0012074:38887-38906 None:intergenic 45.0%
!! AGACTGTACAAGGAGCACTA+AGG + tig0012074:39122-39141 None:intergenic 45.0%
ATGATGGTTGCCGCATGTTA+GGG - tig0012074:39297-39316 Msa1351040:intron 45.0%
AACAAGTGCCCTAAGGGTTA+GGG + tig0012074:39544-39563 None:intergenic 45.0%
TAACAAGTGCCCTAAGGGTT+AGG + tig0012074:39545-39564 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + tig0012074:39550-39569 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + tig0012074:39551-39570 None:intergenic 45.0%
TCTTGCAAGATGTGTGTGAG+GGG - tig0012074:39751-39770 Msa1351040:intron 45.0%
TGCGAGGGCAAGAATATGAT+AGG - tig0012074:39805-39824 Msa1351040:intron 45.0%
GCGAGGGCAAGAATATGATA+GGG - tig0012074:39806-39825 Msa1351040:intron 45.0%
AACAAGTGCCCTAAGGGTTA+GGG + tig0012074:39544-39563 None:intergenic 45.0%
TAACAAGTGCCCTAAGGGTT+AGG + tig0012074:39545-39564 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + tig0012074:39550-39569 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + tig0012074:39551-39570 None:intergenic 45.0%
CTTGCAAGATGTGTGTGAAG+GGG - tig0012074:40341-40360 Msa1351040:intron 45.0%
TTGCAAGATGTGTGTGAAGG+GGG - tig0012074:40342-40361 Msa1351040:intron 45.0%
TGCGAGGGCAAGAATATGAT+AGG - tig0012074:39805-39824 Msa1351040:intron 45.0%
GCGAGGGCAAGAATATGATA+GGG - tig0012074:39806-39825 Msa1351040:intron 45.0%
!! GAAGAGTGCTCTTAGAGCAT+TGG - tig0012074:40631-40650 Msa1351040:intron 45.0%
TAACAAGTGCCCTAAGGGTT+GGG + tig0012074:39545-39564 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + tig0012074:39550-39569 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + tig0012074:39551-39570 None:intergenic 45.0%
! AGCTCAAGCCCTGAGTTTTT+AGG - tig0012074:40860-40879 Msa1351040:intron 45.0%
GAGTGGAAGCTAACTAAGGT+GGG - tig0012074:41026-41045 Msa1351040:CDS 45.0%
GCAATCTCGCTGATACACTA+TGG - tig0012074:41481-41500 Msa1351040:five_prime_UTR 45.0%
CAGCTCCACAAACTAGACTA+AGG + tig0012074:41606-41625 None:intergenic 45.0%
!!! CTTTTTTTTTTTTTAAATTA+AGG + tig0012074:36487-36506 None:intergenic 5.0%
!!! ATATTTTTATAAATATTGAT+TGG - tig0012074:39872-39891 Msa1351040:CDS 5.0%
!!! AATAATATATTAAATTTTAG+GGG - tig0012074:40016-40035 Msa1351040:CDS 5.0%
!!! ATATTTTTATAAATATTGAT+TGG - tig0012074:39872-39891 Msa1351040:CDS 5.0%
! AGAGTCTTGGGGTTTGGGAT+TGG + tig0012074:36834-36853 None:intergenic 50.0%
TAGGATACGGAGCGTAATCG+GGG + tig0012074:36874-36893 None:intergenic 50.0%
ACGTCGTTTGGGTCGAGTTT+AGG + tig0012074:36893-36912 None:intergenic 50.0%
GATTCAGTAGCAACAGGTGG+TGG + tig0012074:36926-36945 None:intergenic 50.0%
CGAGATTCAGTAGCAACAGG+TGG + tig0012074:36929-36948 None:intergenic 50.0%
ACTGGTGCAGGAGAGACATA+GGG + tig0012074:36992-37011 None:intergenic 50.0%
AACTGGTGCAGGAGAGACAT+AGG + tig0012074:36993-37012 None:intergenic 50.0%
! CTCTTAGCAGAAGTGGGTTC+GGG + tig0012074:37016-37035 None:intergenic 50.0%
AGCTGCTGAAGCTACCAAGA+AGG - tig0012074:37170-37189 Msa1351040:intron 50.0%
ACTAGGCTTAGGTGCTTTGG+AGG - tig0012074:37699-37718 Msa1351040:intron 50.0%
ATCAAGTGGGGTAGGCTACA+TGG + tig0012074:37913-37932 None:intergenic 50.0%
TGTAGCCTACCCCACTTGAT+TGG - tig0012074:37913-37932 Msa1351040:intron 50.0%
TGCTGTGGGAAGAATTGCTC+AGG - tig0012074:38136-38155 Msa1351040:intron 50.0%
GCTGTGGGAAGAATTGCTCA+GGG - tig0012074:38137-38156 Msa1351040:intron 50.0%
ATTGAGTCTGGTCACCAGTC+TGG + tig0012074:38346-38365 None:intergenic 50.0%
AGACTGGTGACCAGACTCAA+TGG - tig0012074:38345-38364 Msa1351040:intron 50.0%
TAAACCCCCAACTTGTGTCC+CGG - tig0012074:38576-38595 Msa1351040:intron 50.0%
! ATTTCCGGGACACAAGTTGG+GGG + tig0012074:38583-38602 None:intergenic 50.0%
! GATGATGGTTGCCGCATGTT+AGG - tig0012074:39296-39315 Msa1351040:intron 50.0%
ACTGGGTCAACCCTAACATG+CGG + tig0012074:39310-39329 None:intergenic 50.0%
ACAAGTGCCCTAAGGGTTAG+GGG + tig0012074:39543-39562 None:intergenic 50.0%
CTTGCAAGATGTGTGTGAGG+GGG - tig0012074:39752-39771 Msa1351040:intron 50.0%
TTGCAAGATGTGTGTGAGGG+GGG - tig0012074:39753-39772 Msa1351040:intron 50.0%
ACAAGTGCCCTAAGGGTTAG+GGG + tig0012074:39543-39562 None:intergenic 50.0%
! TGGGCTTAGGGCACTTGTTA+AGG + tig0012074:40770-40789 None:intergenic 50.0%
CTAACAAGTGCCCTAAGGGT+TGG + tig0012074:39546-39565 None:intergenic 50.0%
GGAGTGGAAGCTAACTAAGG+TGG - tig0012074:41025-41044 Msa1351040:CDS 50.0%
!! GGTTGGCTTTGCTTGTGGAT+GGG + tig0012074:41358-41377 None:intergenic 50.0%
!! AGTAGGGTTGGCTTTGCTTG+TGG + tig0012074:41363-41382 None:intergenic 50.0%
AATCAGTGCCTTCAGGGCAG+AGG - tig0012074:36447-36466 Msa1351040:three_prime_UTR 55.0%
TAGCCTAACCTCTGCCCTGA+AGG + tig0012074:36458-36477 None:intergenic 55.0%
!! GTGTTGGTGGGTTGGACATG+AGG + tig0012074:36800-36819 None:intergenic 55.0%
AGGATACGGAGCGTAATCGG+GGG + tig0012074:36873-36892 None:intergenic 55.0%
! TCAGTAGCAACAGGTGGTGG+TGG + tig0012074:36923-36942 None:intergenic 55.0%
GCGCGAGATTCAGTAGCAAC+AGG + tig0012074:36932-36951 None:intergenic 55.0%
ATTAGATTCGGCGGGCATGG+TGG + tig0012074:36969-36988 None:intergenic 55.0%
!! GGCTTAGGTGCTTTGGAGGT+TGG - tig0012074:37703-37722 Msa1351040:intron 55.0%
ACCTCTGCTGGACCTGTCAT+GGG - tig0012074:38263-38282 Msa1351040:intron 55.0%
CCCTAAGGGTTAGGGGCTTA+GGG + tig0012074:39536-39555 None:intergenic 55.0%
CCCTAAGCCCCTAACCCTTA+GGG - tig0012074:39533-39552 Msa1351040:intron 55.0%
TGCAAGATGTGTGCTGTGCG+AGG - tig0012074:39789-39808 Msa1351040:intron 55.0%
GCAAGATGTGTGCTGTGCGA+GGG - tig0012074:39790-39809 Msa1351040:intron 55.0%
! GGGGCTTAGGGCACTTGTTA+AGG + tig0012074:40113-40132 None:intergenic 55.0%
CCCTAAGGGTTAGGGGCTTA+GGG + tig0012074:39536-39555 None:intergenic 55.0%
CCCTAAGCCCCTAACCCTTA+GGG - tig0012074:39533-39552 Msa1351040:intron 55.0%
TGCAAGATGTGTGCTGTGCG+AGG - tig0012074:39789-39808 Msa1351040:intron 55.0%
GCAAGATGTGTGCTGTGCGA+GGG - tig0012074:39790-39809 Msa1351040:intron 55.0%
TGCCCTAAGCCCAACCCTTA+GGG - tig0012074:40777-40796 Msa1351040:intron 55.0%
TGCCCTAAGGGTTGGGCTTA+GGG + tig0012074:40782-40801 None:intergenic 55.0%
ACTGCTCGCAGCTGATGCAA+TGG + tig0012074:41332-41351 None:intergenic 55.0%
!! GGGTTGGCTTTGCTTGTGGA+TGG + tig0012074:41359-41378 None:intergenic 55.0%
GTGCCTTCAGGGCAGAGGTT+AGG - tig0012074:36452-36471 Msa1351040:three_prime_UTR 60.0%
! GTGGTGGTGCGACGTCGTTT+GGG + tig0012074:36904-36923 None:intergenic 60.0%
!! GTAGCAACAGGTGGTGGTGG+TGG + tig0012074:36920-36939 None:intergenic 60.0%
GGGATTAGATTCGGCGGGCA+TGG + tig0012074:36972-36991 None:intergenic 60.0%
! GCAGAAGTGGGTTCGGGAAC+TGG + tig0012074:37010-37029 None:intergenic 60.0%
TGCTACCTCTCCACCTCTGC+TGG - tig0012074:38251-38270 Msa1351040:intron 60.0%
CATGACAGGTCCAGCAGAGG+TGG + tig0012074:38264-38283 None:intergenic 60.0%
CACCTCTGCTGGACCTGTCA+TGG - tig0012074:38262-38281 Msa1351040:intron 60.0%
TCCCATGACAGGTCCAGCAG+AGG + tig0012074:38267-38286 None:intergenic 60.0%
GGGGCTTAGGGCACGTGTTA+AGG + tig0012074:39524-39543 None:intergenic 60.0%
GCCCTAAGCCCCTAACCCTT+AGG - tig0012074:39532-39551 Msa1351040:intron 60.0%
GCCCTAAGGGTTAGGGGCTT+AGG + tig0012074:39537-39556 None:intergenic 60.0%
GCCCTAAGCCCCTAACCCTT+AGG - tig0012074:39532-39551 Msa1351040:intron 60.0%
GCCCTAAGGGTTAGGGGCTT+AGG + tig0012074:39537-39556 None:intergenic 60.0%
GTGCCCTAAGCCCAACCCTT+AGG - tig0012074:40776-40795 Msa1351040:intron 60.0%
GTGCCCTAAGGGTTGGGCTT+AGG + tig0012074:40783-40802 None:intergenic 60.0%
! GGTGGTGGTGCGACGTCGTT+TGG + tig0012074:36905-36924 None:intergenic 65.0%
!! CATGGTGGTGGCAGCATCGG+TGG + tig0012074:36954-36973 None:intergenic 65.0%
!! GGGCATGGTGGTGGCAGCAT+CGG + tig0012074:36957-36976 None:intergenic 65.0%
AGATTCGGCGGGCATGGTGG+TGG + tig0012074:36966-36985 None:intergenic 65.0%
GTGGGTTCGGGAACTGGTGC+AGG + tig0012074:37004-37023 None:intergenic 65.0%
CAGGTCCAGCAGAGGTGGAG+AGG + tig0012074:38259-38278 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0012074 gene 36425 41799 36425 ID=Msa1351040;Name=Msa1351040
tig0012074 mRNA 36425 41799 36425 ID=Msa1351040-mRNA-1;Parent=Msa1351040;Name=Msa1351040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=336|1|1|1|1|1|4|306|273
tig0012074 exon 36425 36904 36425 ID=Msa1351040-mRNA-1:exon:7630;Parent=Msa1351040-mRNA-1
tig0012074 exon 39845 40116 39845 ID=Msa1351040-mRNA-1:exon:7629;Parent=Msa1351040-mRNA-1
tig0012074 exon 40999 41100 40999 ID=Msa1351040-mRNA-1:exon:7628;Parent=Msa1351040-mRNA-1
tig0012074 exon 41190 41799 41190 ID=Msa1351040-mRNA-1:exon:7627;Parent=Msa1351040-mRNA-1
tig0012074 five_prime_UTR 41464 41799 41464 ID=Msa1351040-mRNA-1:five_prime_utr;Parent=Msa1351040-mRNA-1
tig0012074 CDS 41190 41463 41190 ID=Msa1351040-mRNA-1:cds;Parent=Msa1351040-mRNA-1
tig0012074 CDS 40999 41100 40999 ID=Msa1351040-mRNA-1:cds;Parent=Msa1351040-mRNA-1
tig0012074 CDS 39845 40116 39845 ID=Msa1351040-mRNA-1:cds;Parent=Msa1351040-mRNA-1
tig0012074 CDS 36731 36904 36731 ID=Msa1351040-mRNA-1:cds;Parent=Msa1351040-mRNA-1
tig0012074 three_prime_UTR 36425 36730 36425 ID=Msa1351040-mRNA-1:three_prime_utr;Parent=Msa1351040-mRNA-1
Gene Sequence

>Msa1351040

ATGAGTAGTAGTGGTGATCAACCTCCTCAAGTTCAACCTCATGTCCAACCCACCAACACAAACACAAACACCAATCCCAAACCCCAAGACTCTGATTCTCACTCTCACACCCCCGATTACGCTCCGTATCCTAAACTCGACCCAAACGACGTCGCACCACCACCACCACCTGTTGCTACTGAATCTCGCGCCACCGATGCTGCCACCACCATGCCCGCCGAATCTAATCCCTATGTCTCTCCTGCACCAGTTCCCGAACCCACTTCTGCTAAGAATACTTTAGATTCGGTGAAAGATGTTCTTGGAAAATGGGGTAAGAAAGCTGCTGAAGCTACCAAGAAGGCTGAAGATCTTGCTGGAAACATGTGGCAACACTTGAAAACAGGTCCTAGTTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGAACAAAAGTTCTGGCAGAAGGTGGCTACGAGAAGATCTTTAGACAAACTTTTGAGACTGTACCAGAGGAACAACTTCTTAAAACATATGCATGCTACCTCTCCACCTCTGCTGGACCTGTCATGGGAGTCTTGTATTTGTCAACTGCTAAGCTCGCATTCTGTAGCGACAACCCACTTTCTTACCAGACTGGTGACCAGACTCAATGGAGCTATTATAAGGTGGTCATTCCATTGCATCAGCTGCGAGCAGTGAACCCATCCACAAGCAAAGCCAACCCTACTGAAAAATTTATACAGATTATCTCCGTTGACAATCATGAATTTTGGTTTATGGGCTTTGTGTACTACGACAGCGCTGTTAAACATATTCAAGAAGCATTGCAATCTCGCTGA
Protein sequence

>Msa1351040

MSSSGDQPPQVQPHVQPTNTNTNTNPKPQDSDSHSHTPDYAPYPKLDPNDVAPPPPPVATESRATDAATTMPAESNPYVSPAPVPEPTSAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGDQTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQEALQSR*