AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881050 MtrunA17_Chr4g0073551 88.312 154 12 2 1 154 1 148 2.67e-83 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881050 AT2G24090.1 50.633 158 58 4 2 154 3 145 2.40e-36 122

Find 48 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATCAGCAAAGCGATTT+AGG 0.147866 6_1:-28046518 Msa0881050:CDS
CAAGATTGAACAAACCATTT+TGG 0.208259 6_1:+28046409 None:intergenic
TTTCACGAGTCACTGATATT+TGG 0.257574 6_1:+28044391 None:intergenic
AGTGACTATGACAATGTAAT+TGG 0.287106 6_1:-28044581 Msa0881050:CDS
ATTTAGCATGGTCCTGTCTA+AGG 0.305154 6_1:-28044490 Msa0881050:three_prime_UTR
GAAATTGAGACTCTCCAAAA+TGG 0.323830 6_1:-28046423 Msa0881050:CDS
GGCATCAGCAAAGCGATTTA+GGG 0.327417 6_1:-28046517 Msa0881050:CDS
CGATTTAGGGTTACCGGTGC+TGG 0.339311 6_1:-28046504 Msa0881050:CDS
TAGTAACCATGGAATGGTTT+TGG 0.345248 6_1:+28046678 None:intergenic
CAAATGGTGTAAAAGCATAT+TGG 0.367232 6_1:+28044454 None:intergenic
AGACATATGTAATGCTAAAC+AGG 0.381633 6_1:+28044294 None:intergenic
GCAAAGCGATTTAGGGTTAC+CGG 0.390331 6_1:-28046510 Msa0881050:CDS
GTAAATGTGAATAGTAGAAA+TGG 0.410222 6_1:+28044323 None:intergenic
TCAATTCCCTCAAACTCAAT+TGG 0.415519 6_1:-28046730 Msa0881050:CDS
AAAATCGTGCGTCGGAGAGC+AGG 0.438969 6_1:-28046480 Msa0881050:CDS
GAATTGACATTGTTTGAGAA+AGG 0.445692 6_1:+28046746 None:intergenic
CCATGTTAAGAGTGTGTTTG+TGG 0.447071 6_1:+28046873 None:intergenic
TACTAGACCAATTGAGTTTG+AGG 0.451953 6_1:+28046723 None:intergenic
ACTAGACCAATTGAGTTTGA+GGG 0.466679 6_1:+28046724 None:intergenic
CTCACTATCGTATCCGCTAA+AGG 0.476723 6_1:-28046641 Msa0881050:CDS
AAAATAAAACAACTTTCAAA+TGG 0.481515 6_1:+28044438 None:intergenic
TTTCTGTTTACTTTCAGATA+CGG 0.499482 6_1:+28044551 None:intergenic
TTAATTGCGTTTCAATCAAG+TGG 0.506120 6_1:+28046990 None:intergenic
AGGATAGGATAGAACCTTGT+GGG 0.517887 6_1:+28046604 None:intergenic
GTAAGATTTCTACGCGGTTG+TGG 0.520009 6_1:+28046949 None:intergenic
ACACACTCTTAACATGGCGT+TGG 0.535399 6_1:-28046867 Msa0881050:exon
TCTTAACCAAAACCATTCCA+TGG 0.537305 6_1:-28046684 Msa0881050:CDS
TGTAATGCTAAACAGGAAGA+TGG 0.539942 6_1:+28044301 None:intergenic
TTTCAATTTGTAGCCTTTAG+CGG 0.541342 6_1:+28046628 None:intergenic
GACTTCACAAATCCTTAGAC+AGG 0.543426 6_1:+28044478 None:intergenic
CATGGCGTTGGCTTCTGCAA+CGG 0.545322 6_1:-28046855 Msa0881050:CDS
AATTGTTATTACATAATACA+AGG 0.547514 6_1:+28044361 None:intergenic
GCGAGGAGAAGTAGTAACCA+TGG 0.549868 6_1:+28046667 None:intergenic
GTTCTTGTAAATTGTGTGTG+AGG 0.563309 6_1:+28046895 None:intergenic
TTAGCATTACATATGTCTTG+TGG 0.568915 6_1:-28044289 Msa0881050:three_prime_UTR
CGAGTAGAGGAAGAAGAAGA+TGG 0.569694 6_1:+28046794 None:intergenic
CCACAAACACACTCTTAACA+TGG 0.593623 6_1:-28046873 Msa0881050:exon
TCTGAATTATGAATTTAGCA+TGG 0.600627 6_1:-28044502 Msa0881050:three_prime_UTR
GAGAAGTAGTAACCATGGAA+TGG 0.608033 6_1:+28046672 None:intergenic
AAGTCTCAAGGCGGCAAAGG+AGG 0.608560 6_1:+28046823 None:intergenic
TGAAAGTCTCAAGGCGGCAA+AGG 0.614182 6_1:+28046820 None:intergenic
GTAGAGGAAGAAGAAGATGG+TGG 0.614461 6_1:+28046797 None:intergenic
AGATGGTGGTGAAAGTCTCA+AGG 0.634963 6_1:+28046811 None:intergenic
ACTGAAAGAGACACGAGTAG+AGG 0.649199 6_1:+28046781 None:intergenic
GATACGATAGTGAGAGAGCG+AGG 0.653895 6_1:+28046650 None:intergenic
CTACAAATTGAAAACCCACA+AGG 0.682218 6_1:-28046618 Msa0881050:intron
TGGTGGTGAAAGTCTCAAGG+CGG 0.774344 6_1:+28046814 None:intergenic
GATTGAGTAAGATTTCTACG+CGG 0.814577 6_1:+28046943 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTTGTGAATT+AGG - chr6_1:28045968-28045987 Msa0881050:intron 10.0%
!!! TTAATTGAATTTCATTTTTC+AGG - chr6_1:28044658-28044677 Msa0881050:intron 15.0%
!! AAAATAAAACAACTTTCAAA+TGG + chr6_1:28046761-28046780 None:intergenic 15.0%
!!! TTTATTTTACAAATGAATTG+AGG - chr6_1:28046773-28046792 Msa0881050:CDS 15.0%
!!! AATTGTTATTACATAATACA+AGG + chr6_1:28046838-28046857 None:intergenic 15.0%
!! TTATTATCATCATTCTTCTT+TGG - chr6_1:28044836-28044855 Msa0881050:intron 20.0%
!!! TTTGGTATTTGTTTACTTTT+TGG - chr6_1:28044896-28044915 Msa0881050:intron 20.0%
!!! TGATTGATAATTCATAAGAT+AGG + chr6_1:28045503-28045522 None:intergenic 20.0%
!! GATATTGTTAATTAGTAAGT+TGG - chr6_1:28045644-28045663 Msa0881050:intron 20.0%
!!! TCATGTTATTTGTTAATAAG+AGG - chr6_1:28045683-28045702 Msa0881050:intron 20.0%
!!! CATGTTATTTGTTAATAAGA+GGG - chr6_1:28045684-28045703 Msa0881050:intron 20.0%
!!! ATGTTATTTGTTAATAAGAG+GGG - chr6_1:28045685-28045704 Msa0881050:intron 20.0%
!! TTAAATTAGCTATGAAATCA+TGG - chr6_1:28045881-28045900 Msa0881050:intron 20.0%
!! TAAATTAGCTATGAAATCAT+GGG - chr6_1:28045882-28045901 Msa0881050:intron 20.0%
!! ACGAACAATTAAGTTAATTA+TGG - chr6_1:28046533-28046552 Msa0881050:intron 20.0%
!!! GTAAATCAATTTTTTCCTTA+TGG - chr6_1:28046929-28046948 Msa0881050:five_prime_UTR 20.0%
! TACATAGTTAAACTTGAAGT+GGG + chr6_1:28044626-28044645 None:intergenic 25.0%
! ATACATAGTTAAACTTGAAG+TGG + chr6_1:28044627-28044646 None:intergenic 25.0%
!! AAGTTTTACTACATGAAAGT+GGG - chr6_1:28045120-28045139 Msa0881050:intron 25.0%
!! GACATTGTAGATATTTTGTT+TGG + chr6_1:28045316-28045335 None:intergenic 25.0%
! AGTGATAAAAACTTGGTATT+TGG + chr6_1:28045616-28045635 None:intergenic 25.0%
! TCTATTGAGTGATAAAAACT+TGG + chr6_1:28045623-28045642 None:intergenic 25.0%
!! AAGTTTTTATCACTCAATAG+AGG - chr6_1:28045622-28045641 Msa0881050:intron 25.0%
!! AAAATTTGAAAAGTGCAACT+TGG + chr6_1:28046043-28046062 None:intergenic 25.0%
! ATCTCAGCAATAAATATTTG+CGG + chr6_1:28046112-28046131 None:intergenic 25.0%
! TGATAAATTACAACCTTCTA+TGG - chr6_1:28046154-28046173 Msa0881050:intron 25.0%
! GAATGATATTTGATATACTG+TGG - chr6_1:28046402-28046421 Msa0881050:intron 25.0%
!!! ATTTTTACCGAACTTTTTCT+TGG - chr6_1:28046481-28046500 Msa0881050:CDS 25.0%
!!! TTTTTACCGAACTTTTTCTT+GGG - chr6_1:28046482-28046501 Msa0881050:CDS 25.0%
! AAAATTCCCAAGAAAAAGTT+CGG + chr6_1:28046491-28046510 None:intergenic 25.0%
! TTTCTGTTTACTTTCAGATA+CGG + chr6_1:28046648-28046667 None:intergenic 25.0%
! TCTGAATTATGAATTTAGCA+TGG - chr6_1:28046694-28046713 Msa0881050:CDS 25.0%
! GTAAATGTGAATAGTAGAAA+TGG + chr6_1:28046876-28046895 None:intergenic 25.0%
! TTTACAACAAAAAGTCCATA+AGG + chr6_1:28046947-28046966 None:intergenic 25.0%
!!! ACTTTTTGTTGTAAATCATG+TGG - chr6_1:28046952-28046971 Msa0881050:five_prime_UTR 25.0%
TTAATTGCGTTTCAATCAAG+TGG + chr6_1:28044209-28044228 None:intergenic 30.0%
GAATTGACATTGTTTGAGAA+AGG + chr6_1:28044453-28044472 None:intergenic 30.0%
!!! GAATGGTTTTGGTTAAGAAT+TGG + chr6_1:28044510-28044529 None:intergenic 30.0%
TTTCAATTTGTAGCCTTTAG+CGG + chr6_1:28044571-28044590 None:intergenic 30.0%
GCTCTACAAAAAGAATAAGA+AGG - chr6_1:28044751-28044770 Msa0881050:intron 30.0%
! CAAGATTGAACAAACCATTT+TGG + chr6_1:28044790-28044809 None:intergenic 30.0%
TCATTGCTTACAACTGTATT+TGG - chr6_1:28044878-28044897 Msa0881050:intron 30.0%
! GAAGTTTTACTACATGAAAG+TGG - chr6_1:28045119-28045138 Msa0881050:intron 30.0%
ACACATGAAAAATAGAGAGA+AGG + chr6_1:28045252-28045271 None:intergenic 30.0%
ATATATCATGTAGCTCAAGT+AGG - chr6_1:28045349-28045368 Msa0881050:intron 30.0%
TCCTATATGAACATGGAAAT+CGG + chr6_1:28045391-28045410 None:intergenic 30.0%
TGATGTCAAAACGGTTTAAA+GGG + chr6_1:28045419-28045438 None:intergenic 30.0%
GATAATTCATAAGATAGGCA+AGG + chr6_1:28045498-28045517 None:intergenic 30.0%
TGAGAGAGAGAAAAAGATTA+AGG + chr6_1:28045553-28045572 None:intergenic 30.0%
! AATTAGTAAGTTGGCTAACT+AGG - chr6_1:28045653-28045672 Msa0881050:intron 30.0%
! TGCTGATTGTTTGTATTCAA+GGG - chr6_1:28045786-28045805 Msa0881050:intron 30.0%
! AGGCATTTTGTTAAGATTTG+TGG + chr6_1:28046007-28046026 None:intergenic 30.0%
ATCTTAACAAAATGCCTTGA+TGG - chr6_1:28046010-28046029 Msa0881050:intron 30.0%
TCTTAACAAAATGCCTTGAT+GGG - chr6_1:28046011-28046030 Msa0881050:intron 30.0%
GAGGACTAAAATAAAGTCAT+TGG - chr6_1:28046184-28046203 Msa0881050:intron 30.0%
AGTGACTATGACAATGTAAT+TGG - chr6_1:28046615-28046634 Msa0881050:intron 30.0%
! CAAATGGTGTAAAAGCATAT+TGG + chr6_1:28046745-28046764 None:intergenic 30.0%
AGACATATGTAATGCTAAAC+AGG + chr6_1:28046905-28046924 None:intergenic 30.0%
TTAGCATTACATATGTCTTG+TGG - chr6_1:28046907-28046926 Msa0881050:five_prime_UTR 30.0%
GATTGAGTAAGATTTCTACG+CGG + chr6_1:28044256-28044275 None:intergenic 35.0%
GTTCTTGTAAATTGTGTGTG+AGG + chr6_1:28044304-28044323 None:intergenic 35.0%
TCAATTCCCTCAAACTCAAT+TGG - chr6_1:28044466-28044485 Msa0881050:three_prime_UTR 35.0%
ACTAGACCAATTGAGTTTGA+GGG + chr6_1:28044475-28044494 None:intergenic 35.0%
TACTAGACCAATTGAGTTTG+AGG + chr6_1:28044476-28044495 None:intergenic 35.0%
!!! GTTTTGGTTAAGAATTGGAG+CGG + chr6_1:28044505-28044524 None:intergenic 35.0%
TCTTAACCAAAACCATTCCA+TGG - chr6_1:28044512-28044531 Msa0881050:three_prime_UTR 35.0%
! TAGTAACCATGGAATGGTTT+TGG + chr6_1:28044521-28044540 None:intergenic 35.0%
CTACAAATTGAAAACCCACA+AGG - chr6_1:28044578-28044597 Msa0881050:CDS 35.0%
GAAATTGAGACTCTCCAAAA+TGG - chr6_1:28044773-28044792 Msa0881050:intron 35.0%
! TAGCTTGTATCTAACTCCTA+AGG + chr6_1:28044993-28045012 None:intergenic 35.0%
TTAGGAGTTAGATACAAGCT+AGG - chr6_1:28044992-28045011 Msa0881050:intron 35.0%
TAGGAGTTAGATACAAGCTA+GGG - chr6_1:28044993-28045012 Msa0881050:intron 35.0%
! TTTTGTGCAATTGTTATGCG+CGG - chr6_1:28045039-28045058 Msa0881050:intron 35.0%
!! AAAGTGGGTGACTTTTTCTT+GGG - chr6_1:28045135-28045154 Msa0881050:intron 35.0%
GTTGTGAGATTACTAGAAGA+GGG - chr6_1:28045163-28045182 Msa0881050:intron 35.0%
!! TTTTAGGAAATGGGAATGGA+TGG - chr6_1:28045190-28045209 Msa0881050:intron 35.0%
TGAAAAATAGAGAGAAGGCA+GGG + chr6_1:28045247-28045266 None:intergenic 35.0%
ATGAAAAATAGAGAGAAGGC+AGG + chr6_1:28045248-28045267 None:intergenic 35.0%
TCCGATTTCCATGTTCATAT+AGG - chr6_1:28045387-28045406 Msa0881050:intron 35.0%
GTGATGTCAAAACGGTTTAA+AGG + chr6_1:28045420-28045439 None:intergenic 35.0%
TCATAAGATAGGCAAGGTAA+AGG + chr6_1:28045492-28045511 None:intergenic 35.0%
ACTTATCACACAATTGAGTG+TGG - chr6_1:28045526-28045545 Msa0881050:intron 35.0%
AAACAATCAGCAGAGATTTG+AGG + chr6_1:28045778-28045797 None:intergenic 35.0%
! CTGCTGATTGTTTGTATTCA+AGG - chr6_1:28045785-28045804 Msa0881050:intron 35.0%
ATGAAATCATGGGTTTGAAC+TGG - chr6_1:28045892-28045911 Msa0881050:intron 35.0%
GACAGTAGAACAGAAAATTG+TGG + chr6_1:28046090-28046109 None:intergenic 35.0%
AACCTTCTATGGAAAATGTG+AGG - chr6_1:28046165-28046184 Msa0881050:intron 35.0%
TCAATTGAACTGAACTGTAG+TGG - chr6_1:28046231-28046250 Msa0881050:intron 35.0%
CAGTATAGAATTTCATCACC+TGG - chr6_1:28046299-28046318 Msa0881050:intron 35.0%
ATAGAATTTCATCACCTGGA+AGG - chr6_1:28046303-28046322 Msa0881050:intron 35.0%
! AAATCCAAGTGTTGTTAGGA+TGG + chr6_1:28046373-28046392 None:intergenic 35.0%
! CTAGAAATCCAAGTGTTGTT+AGG + chr6_1:28046377-28046396 None:intergenic 35.0%
TCAACCAAAATGCCACATTT+CGG + chr6_1:28046457-28046476 None:intergenic 35.0%
TTTCACGAGTCACTGATATT+TGG + chr6_1:28046808-28046827 None:intergenic 35.0%
TGTAATGCTAAACAGGAAGA+TGG + chr6_1:28046898-28046917 None:intergenic 35.0%
! CCATGTTAAGAGTGTGTTTG+TGG + chr6_1:28044326-28044345 None:intergenic 40.0%
CCACAAACACACTCTTAACA+TGG - chr6_1:28044323-28044342 Msa0881050:three_prime_UTR 40.0%
GAGAAGTAGTAACCATGGAA+TGG + chr6_1:28044527-28044546 None:intergenic 40.0%
AGGATAGGATAGAACCTTGT+GGG + chr6_1:28044595-28044614 None:intergenic 40.0%
! AAGTGGGTTTGAAAGAGGAT+AGG + chr6_1:28044610-28044629 None:intergenic 40.0%
! ACTTGAAGTGGGTTTGAAAG+AGG + chr6_1:28044615-28044634 None:intergenic 40.0%
! CTAACTCCTAAGGTACTCTT+GGG + chr6_1:28044983-28045002 None:intergenic 40.0%
! TCTAACTCCTAAGGTACTCT+TGG + chr6_1:28044984-28045003 None:intergenic 40.0%
GTTAGATACAAGCTAGGGTA+TGG - chr6_1:28044998-28045017 Msa0881050:intron 40.0%
!! GAAAGTGGGTGACTTTTTCT+TGG - chr6_1:28045134-28045153 Msa0881050:intron 40.0%
!! AAGTGGGTGACTTTTTCTTG+GGG - chr6_1:28045136-28045155 Msa0881050:intron 40.0%
GGTTGTGAGATTACTAGAAG+AGG - chr6_1:28045162-28045181 Msa0881050:intron 40.0%
!! TGGCTTTTAGGAAATGGGAA+TGG - chr6_1:28045186-28045205 Msa0881050:intron 40.0%
ATGGGAATGGATGGAAAAGT+TGG - chr6_1:28045199-28045218 Msa0881050:intron 40.0%
ATGGATGGAAAAGTTGGACT+TGG - chr6_1:28045205-28045224 Msa0881050:intron 40.0%
GGCATCATCCTATATGAACA+TGG + chr6_1:28045398-28045417 None:intergenic 40.0%
CTTGATGCGTGATGTCAAAA+CGG + chr6_1:28045428-28045447 None:intergenic 40.0%
ACAAGATAGGTCACTCTCTA+AGG + chr6_1:28045713-28045732 None:intergenic 40.0%
GAGTGACCTATCTTGTCAAA+TGG - chr6_1:28045717-28045736 Msa0881050:intron 40.0%
GACCTATCTTGTCAAATGGA+AGG - chr6_1:28045721-28045740 Msa0881050:intron 40.0%
CTCCTTCCATTTGACAAGAT+AGG + chr6_1:28045726-28045745 None:intergenic 40.0%
TCTTGTCAAATGGAAGGAGT+AGG - chr6_1:28045727-28045746 Msa0881050:intron 40.0%
CTTGTCAAATGGAAGGAGTA+GGG - chr6_1:28045728-28045747 Msa0881050:intron 40.0%
TTGTCAAATGGAAGGAGTAG+GGG - chr6_1:28045729-28045748 Msa0881050:intron 40.0%
GTAGGGGGCTTAATGAATTT+AGG - chr6_1:28045745-28045764 Msa0881050:intron 40.0%
GGGGCTTAATGAATTTAGGA+GGG - chr6_1:28045749-28045768 Msa0881050:intron 40.0%
GCTTAATGAATTTAGGAGGG+TGG - chr6_1:28045752-28045771 Msa0881050:intron 40.0%
AACTTGGAATACACCCATCA+AGG + chr6_1:28046027-28046046 None:intergenic 40.0%
! GTCCTCACATTTTCCATAGA+AGG + chr6_1:28046170-28046189 None:intergenic 40.0%
GATGAGATGAAATTCCTTCC+AGG + chr6_1:28046320-28046339 None:intergenic 40.0%
! AGTGTTGTTAGGATGGATGT+GGG + chr6_1:28046366-28046385 None:intergenic 40.0%
! AAGTGTTGTTAGGATGGATG+TGG + chr6_1:28046367-28046386 None:intergenic 40.0%
ACATCCATCCTAACAACACT+TGG - chr6_1:28046366-28046385 Msa0881050:intron 40.0%
CAACCAAAATGCCACATTTC+GGG + chr6_1:28046456-28046475 None:intergenic 40.0%
ATTTAGCATGGTCCTGTCTA+AGG - chr6_1:28046706-28046725 Msa0881050:CDS 40.0%
GACTTCACAAATCCTTAGAC+AGG + chr6_1:28046721-28046740 None:intergenic 40.0%
GTAAGATTTCTACGCGGTTG+TGG + chr6_1:28044250-28044269 None:intergenic 45.0%
ACACACTCTTAACATGGCGT+TGG - chr6_1:28044329-28044348 Msa0881050:three_prime_UTR 45.0%
! AGATGGTGGTGAAAGTCTCA+AGG + chr6_1:28044388-28044407 None:intergenic 45.0%
GTAGAGGAAGAAGAAGATGG+TGG + chr6_1:28044402-28044421 None:intergenic 45.0%
CGAGTAGAGGAAGAAGAAGA+TGG + chr6_1:28044405-28044424 None:intergenic 45.0%
ACTGAAAGAGACACGAGTAG+AGG + chr6_1:28044418-28044437 None:intergenic 45.0%
CTCACTATCGTATCCGCTAA+AGG - chr6_1:28044555-28044574 Msa0881050:CDS 45.0%
GAGGATAGGATAGAACCTTG+TGG + chr6_1:28044596-28044615 None:intergenic 45.0%
AGGCATCAGCAAAGCGATTT+AGG - chr6_1:28044678-28044697 Msa0881050:intron 45.0%
GGCATCAGCAAAGCGATTTA+GGG - chr6_1:28044679-28044698 Msa0881050:intron 45.0%
! GCAAAGCGATTTAGGGTTAC+CGG - chr6_1:28044686-28044705 Msa0881050:intron 45.0%
! AAGGTACTCTTGGGCAAGAA+AGG + chr6_1:28044974-28044993 None:intergenic 45.0%
!! TTCTTGCCCAAGAGTACCTT+AGG - chr6_1:28044974-28044993 Msa0881050:intron 45.0%
TACAAGCTAGGGTATGGAAC+TGG - chr6_1:28045004-28045023 Msa0881050:intron 45.0%
!! GGTGACTTTTTCTTGGGGTT+GGG - chr6_1:28045141-28045160 Msa0881050:intron 45.0%
GTGAGATTACTAGAAGAGGG+TGG - chr6_1:28045166-28045185 Msa0881050:intron 45.0%
! ACTAGAAGAGGGTGGCTTTT+AGG - chr6_1:28045174-28045193 Msa0881050:intron 45.0%
!! AGAGGGTGGCTTTTAGGAAA+TGG - chr6_1:28045180-28045199 Msa0881050:intron 45.0%
!! GAGGGTGGCTTTTAGGAAAT+GGG - chr6_1:28045181-28045200 Msa0881050:intron 45.0%
TGTCAAATGGAAGGAGTAGG+GGG - chr6_1:28045730-28045749 Msa0881050:intron 45.0%
GGGGGCTTAATGAATTTAGG+AGG - chr6_1:28045748-28045767 Msa0881050:intron 45.0%
TGTTAGGATGGATGTGGGTT+TGG + chr6_1:28046361-28046380 None:intergenic 45.0%
! TCACCCGAAATGTGGCATTT+TGG - chr6_1:28046450-28046469 Msa0881050:CDS 45.0%
TGAAAGTCTCAAGGCGGCAA+AGG + chr6_1:28044379-28044398 None:intergenic 50.0%
! TGGTGGTGAAAGTCTCAAGG+CGG + chr6_1:28044385-28044404 None:intergenic 50.0%
GCGAGGAGAAGTAGTAACCA+TGG + chr6_1:28044532-28044551 None:intergenic 50.0%
GATACGATAGTGAGAGAGCG+AGG + chr6_1:28044549-28044568 None:intergenic 50.0%
! ACGCACGATTTTTCCAGCAC+CGG + chr6_1:28044708-28044727 None:intergenic 50.0%
GTGCTGGAAAAATCGTGCGT+CGG - chr6_1:28044708-28044727 Msa0881050:intron 50.0%
!! GGGTGACTTTTTCTTGGGGT+TGG - chr6_1:28045140-28045159 Msa0881050:intron 50.0%
TGTGGAGAAGCTCAAGTGTC+TGG - chr6_1:28046420-28046439 Msa0881050:CDS 50.0%
AGAAGCTCAAGTGTCTGGCT+TGG - chr6_1:28046425-28046444 Msa0881050:CDS 50.0%
GCTTGGATTCACCCGAAATG+TGG - chr6_1:28046442-28046461 Msa0881050:CDS 50.0%
!! CATGGCGTTGGCTTCTGCAA+CGG - chr6_1:28044341-28044360 Msa0881050:three_prime_UTR 55.0%
AAGTCTCAAGGCGGCAAAGG+AGG + chr6_1:28044376-28044395 None:intergenic 55.0%
! CGATTTAGGGTTACCGGTGC+TGG - chr6_1:28044692-28044711 Msa0881050:intron 55.0%
AAAATCGTGCGTCGGAGAGC+AGG - chr6_1:28044716-28044735 Msa0881050:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 28044201 28047017 28044201 ID=Msa0881050;Name=Msa0881050
chr6_1 mRNA 28044201 28047017 28044201 ID=Msa0881050-mRNA-1;Parent=Msa0881050;Name=Msa0881050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=141|0.5|0.66|1|1|1|3|340|154
chr6_1 exon 28044201 28044618 28044201 ID=Msa0881050-mRNA-1:exon:6995;Parent=Msa0881050-mRNA-1
chr6_1 exon 28046410 28046538 28046410 ID=Msa0881050-mRNA-1:exon:6994;Parent=Msa0881050-mRNA-1
chr6_1 exon 28046619 28047017 28046619 ID=Msa0881050-mRNA-1:exon:6993;Parent=Msa0881050-mRNA-1
chr6_1 five_prime_UTR 28046877 28047017 28046877 ID=Msa0881050-mRNA-1:five_prime_utr;Parent=Msa0881050-mRNA-1
chr6_1 CDS 28046619 28046876 28046619 ID=Msa0881050-mRNA-1:cds;Parent=Msa0881050-mRNA-1
chr6_1 CDS 28046410 28046538 28046410 ID=Msa0881050-mRNA-1:cds;Parent=Msa0881050-mRNA-1
chr6_1 CDS 28044541 28044618 28044541 ID=Msa0881050-mRNA-1:cds;Parent=Msa0881050-mRNA-1
chr6_1 three_prime_UTR 28044201 28044540 28044201 ID=Msa0881050-mRNA-1:three_prime_utr;Parent=Msa0881050-mRNA-1
Gene Sequence

>Msa0881050

ATGGCGTTGGCTTCTGCAACGGTCACAGTCTCCTCCTTTGCCGCCTTGAGACTTTCACCACCATCTTCTTCTTCCTCTACTCGTGTCTCTTTCAGTTCAGTTAAATCACCTTTCTCAAACAATGTCAATTCCCTCAAACTCAATTGGTCTAGTAGTATTTCCGCTCCAATTCTTAACCAAAACCATTCCATGGTTACTACTTCTCCTCGCTCTCTCACTATCGTATCCGCTAAAGGCTACAAATTGAAAACCCACAAGGCATCAGCAAAGCGATTTAGGGTTACCGGTGCTGGAAAAATCGTGCGTCGGAGAGCAGGAAAGCAACATTTGCTCTACAAAAAGAATAAGAAGGAAATTGAGACTCTCCAAAATGGTTTGTTCAATCTTATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCGTATCTGAAAGTAAACAGAAAAGCTACGTAA

Protein sequence

>Msa0881050

MALASATVTVSSFAALRLSPPSSSSSTRVSFSSVKSPFSNNVNSLKLNWSSSISAPILNQNHSMVTTSPRSLTIVSAKGYKLKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKEIETLQNGLFNLIQVNRSDYDNVIGALPYLKVNRKAT*