AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1214900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214900 MtrunA17_Chr4g0063951 97.758 223 5 0 16 238 1 223 1.45e-159 441
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214900 AT4G02530.1 57.456 228 80 5 16 238 1 216 2.59e-76 230
Msa1214900 AT4G02530.2 57.456 228 80 5 16 238 51 266 5.13e-76 231
Msa1214900 AT4G02530.3 55.208 192 69 5 16 202 51 230 4.64e-56 179

Find 65 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCAGCTGGTTCTGTATT+AGG 0.115134 8_1:-75781008 Msa1214900:CDS
CAATTCTTCACTTGCTTCAT+TGG 0.228075 8_1:-75780443 Msa1214900:CDS
CAATGGCAATTTGGAACATT+TGG 0.246482 8_1:+75781906 None:intergenic
TGAAGACACAAAGGCAATTT+TGG 0.248885 8_1:+75779860 None:intergenic
CCCAAACTTTAGCCATTAAA+AGG 0.259676 8_1:-75779498 Msa1214900:three_prime_UTR
ATGCACATTACCTGTTTCTT+TGG 0.259731 8_1:+75781482 None:intergenic
GGGCTGGTTGGTAAACTTAA+AGG 0.260350 8_1:-75779804 Msa1214900:CDS
TGCCCCATGACACCAAAATT+TGG 0.279184 8_1:+75779696 None:intergenic
CTTCAGCTGGTTCTGTATTA+GGG 0.290521 8_1:-75781007 Msa1214900:CDS
TGATGATGATGTTGAGCTTT+TGG 0.311994 8_1:-75781565 Msa1214900:CDS
ATTAGCCATGATCTTGAATA+TGG 0.312967 8_1:+75779455 Msa1214890:three_prime_UTR
ACCTATAGATACGTCTCTTT+TGG 0.314372 8_1:+75781659 None:intergenic
AAGACATGGCAATGGCAATT+TGG 0.316877 8_1:+75781897 None:intergenic
GAGCCAGAAAAGAAAATTAA+TGG 0.318122 8_1:+75779720 None:intergenic
CTTGCTTCATTGGTTTCATC+AGG 0.341279 8_1:-75780433 Msa1214900:intron
TTTGGAACATTTGGAGGATA+AGG 0.353186 8_1:+75781915 None:intergenic
AGCTAATATAGCTTTGAATA+AGG 0.354961 8_1:-75780955 Msa1214900:intron
TCCACCTCAGACTTCTCTTC+AGG 0.369279 8_1:+75780472 None:intergenic
TTGGAGGATAAGGTTGTTGT+TGG 0.383540 8_1:+75781925 None:intergenic
GGTCCTTTCATTGAGTGGTA+AGG 0.408816 8_1:-75781622 Msa1214900:CDS
GGCTGGTTGGTAAACTTAAA+GGG 0.418797 8_1:-75779803 Msa1214900:CDS
CACATTACCTGTTTCTTTGG+TGG 0.425838 8_1:+75781485 None:intergenic
TTTCCTAGATAAAGCTCTGC+TGG 0.432116 8_1:+75779670 None:intergenic
AGTTCCTCCACCAAAGAAAC+AGG 0.434147 8_1:-75781492 Msa1214900:intron
GAGAAGTGGACCTCCTTGAC+AGG 0.434367 8_1:-75779825 Msa1214900:CDS
CGGATCATGAAGTTTGAGCT+TGG 0.435253 8_1:-75779626 Msa1214900:three_prime_UTR
GTCCTTTCATTGAGTGGTAA+GGG 0.444161 8_1:-75781621 Msa1214900:CDS
GATGAAGATGCTAGATGAAA+AGG 0.445046 8_1:+75781789 None:intergenic
GAAAGGCAAGGATGCTGATT+GGG 0.449036 8_1:-75780985 Msa1214900:CDS
ACTCAATGAAAGGACCAAAC+TGG 0.472731 8_1:+75781629 None:intergenic
TGGCAATTTGGAACATTTGG+AGG 0.481259 8_1:+75781909 None:intergenic
GGAAAGGCAAGGATGCTGAT+TGG 0.483283 8_1:-75780986 Msa1214900:CDS
CTCAGACTTCTCTTCAGGAC+TGG 0.493549 8_1:+75780477 None:intergenic
GTGGACCTCCTTGACAGGGC+TGG 0.503664 8_1:-75779820 Msa1214900:CDS
GTCCCAGCAGAGCTTTATCT+AGG 0.513568 8_1:-75779673 Msa1214900:three_prime_UTR
TGCAGGGTATCTTCAAGACT+TGG 0.514050 8_1:-75781078 Msa1214900:intron
ATTACCTGTTTCTTTGGTGG+AGG 0.519264 8_1:+75781488 None:intergenic
ACCAAAAGAGACGTATCTAT+AGG 0.519801 8_1:-75781660 Msa1214900:CDS
TTGTTCACTCAAGCTACTGA+AGG 0.520057 8_1:-75779546 Msa1214900:three_prime_UTR
ACCTCCTTGACAGGGCTGGT+TGG 0.528931 8_1:-75779816 Msa1214900:CDS
CATGATCTTGAATATGGCTA+TGG 0.535127 8_1:+75779461 None:intergenic
AACCCTTACCACTCAATGAA+AGG 0.544169 8_1:+75781619 None:intergenic
ATGAAGATGCTAGATGAAAA+GGG 0.545433 8_1:+75781790 None:intergenic
AGTTTGGTCCTTTCATTGAG+TGG 0.547127 8_1:-75781627 Msa1214900:CDS
GGTTGATTAACTACTTTGCA+AGG 0.549195 8_1:+75781696 None:intergenic
CAGCCTCTGCAATTGAGAAG+TGG 0.553034 8_1:-75779839 Msa1214900:CDS
GCTGGTTCTGTATTAGGGAA+AGG 0.556120 8_1:-75781002 Msa1214900:CDS
ATTAAAAGGTGTCACGGCAG+AGG 0.558942 8_1:-75779484 Msa1214900:three_prime_UTR
GTGTACAAATTGAGTGAAGT+TGG 0.572552 8_1:-75781056 Msa1214900:CDS
TTTACCAACCAGCCCTGTCA+AGG 0.574580 8_1:+75779812 None:intergenic
ACAGGGTTGTAAGCATATGT+TGG 0.583037 8_1:+75781747 None:intergenic
TTCCTAGATAAAGCTCTGCT+GGG 0.593420 8_1:+75779671 None:intergenic
TTTAATGGCTAAAGTTTGGG+TGG 0.600097 8_1:+75779501 None:intergenic
GCATGAAAATTTAGAAGACA+TGG 0.609987 8_1:+75781883 None:intergenic
GGCAGTTGCTCAGAATGATG+TGG 0.619645 8_1:-75779889 Msa1214900:intron
TCCTGAAGAGAAGTCTGAGG+TGG 0.622057 8_1:-75780473 Msa1214900:CDS
TTAGCCATTAAAAGGTGTCA+CGG 0.625905 8_1:-75779490 Msa1214900:three_prime_UTR
TTCTGTATTAGGGAAAGGCA+AGG 0.632545 8_1:-75780997 Msa1214900:CDS
AGAAGTGGACCTCCTTGACA+GGG 0.632549 8_1:-75779824 Msa1214900:CDS
AAGAAGAGACTTGAGAAACA+AGG 0.638852 8_1:-75781522 Msa1214900:CDS
TGCAGAGGCTGAAGACACAA+AGG 0.649840 8_1:+75779851 None:intergenic
GGTCCACTTCTCAATTGCAG+AGG 0.653988 8_1:+75779836 None:intergenic
CAGTCCTGAAGAGAAGTCTG+AGG 0.662394 8_1:-75780476 Msa1214900:CDS
AAATTTAGAAGACATGGCAA+TGG 0.664050 8_1:+75781889 None:intergenic
ACCAACCAGCCCTGTCAAGG+AGG 0.690236 8_1:+75779815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTTATATGTATTATTA+TGG + chr8_1:75780014-75780033 None:intergenic 10.0%
!! TAATAATACATATAAATTTG+AGG - chr8_1:75780014-75780033 Msa1214900:intron 10.0%
!!! CTTTTGTTTTGTTTATTTTT+TGG + chr8_1:75779557-75779576 None:intergenic 15.0%
!!! GATATGAAATTTATTTTTCA+TGG - chr8_1:75779959-75779978 Msa1214900:intron 15.0%
!! ATTAAACTTATACAATATCT+AGG + chr8_1:75780128-75780147 None:intergenic 15.0%
!! GAACAAAATCATTCAATTTA+AGG + chr8_1:75779990-75780009 None:intergenic 20.0%
!! TTAATTTCTTTGCAGTAATA+TGG - chr8_1:75780671-75780690 Msa1214900:intron 20.0%
!! ATAAGAGAATTTATGTATCA+AGG + chr8_1:75780755-75780774 None:intergenic 20.0%
!! TTCTATAAATAAACAAGAGA+AGG + chr8_1:75781149-75781168 None:intergenic 20.0%
!! GTTGATATGTATAATTGATT+TGG + chr8_1:75781213-75781232 None:intergenic 20.0%
!!! AATGTGATTTTAAATACACT+TGG + chr8_1:75781238-75781257 None:intergenic 20.0%
!!! GTTTGGCTTTTATTTTAAAA+TGG + chr8_1:75781312-75781331 None:intergenic 20.0%
!!! ATTCCATTAATTTTCTTTTC+TGG - chr8_1:75781690-75781709 Msa1214900:CDS 20.0%
! AGAGAGAGAAAAAAAAAACA+TGG - chr8_1:75779575-75779594 Msa1214900:three_prime_UTR 25.0%
!!! TATAGGTTTTATTACCAGTT+TGG - chr8_1:75779770-75779789 Msa1214900:three_prime_UTR 25.0%
! TAATTTAGCACAATTCATGA+GGG - chr8_1:75780040-75780059 Msa1214900:intron 25.0%
! ATCAAACAATAACATGAACT+AGG + chr8_1:75780208-75780227 None:intergenic 25.0%
!!! GTTTTGAGTTTTTTCATGAA+AGG + chr8_1:75780237-75780256 None:intergenic 25.0%
! TCATTCGTTAGTACAAAAAA+GGG + chr8_1:75780307-75780326 None:intergenic 25.0%
! TTCATTCGTTAGTACAAAAA+AGG + chr8_1:75780308-75780327 None:intergenic 25.0%
! AACGAATGAAAAATAATTGC+AGG - chr8_1:75780318-75780337 Msa1214900:intron 25.0%
! ACGAATGAAAAATAATTGCA+GGG - chr8_1:75780319-75780338 Msa1214900:intron 25.0%
!!! AGCTAATATAGCTTTGAATA+AGG - chr8_1:75780458-75780477 Msa1214900:CDS 25.0%
! ATTGAAGATTTCCTAACAAA+GGG + chr8_1:75780605-75780624 None:intergenic 25.0%
! TATTGAAGATTTCCTAACAA+AGG + chr8_1:75780606-75780625 None:intergenic 25.0%
! ACTGCAAAGAAATTAATAAC+AGG + chr8_1:75780667-75780686 None:intergenic 25.0%
! TCTTAGTCAATAGCAATAAT+TGG - chr8_1:75780716-75780735 Msa1214900:intron 25.0%
! AATTTCAAAATTGAGGAAAC+TGG - chr8_1:75780789-75780808 Msa1214900:intron 25.0%
!!! AGACTATTTTTTAGTGTGTT+TGG + chr8_1:75781329-75781348 None:intergenic 25.0%
!! ACTCTTAATATTGATGCTTT+TGG - chr8_1:75781503-75781522 Msa1214900:CDS 25.0%
AAATTTAGAAGACATGGCAA+TGG + chr8_1:75779527-75779546 None:intergenic 30.0%
GCATGAAAATTTAGAAGACA+TGG + chr8_1:75779533-75779552 None:intergenic 30.0%
ATGAAGATGCTAGATGAAAA+GGG + chr8_1:75779626-75779645 None:intergenic 30.0%
! TTTTCACATTGCATTTGACA+GGG + chr8_1:75779686-75779705 None:intergenic 30.0%
CTAATTTAGCACAATTCATG+AGG - chr8_1:75780039-75780058 Msa1214900:intron 30.0%
CTCTCATAAAGTGCAAATAT+TGG - chr8_1:75780083-75780102 Msa1214900:intron 30.0%
AAAAATGATCTAACTTCAGC+TGG - chr8_1:75780393-75780412 Msa1214900:intron 30.0%
TCCAAACATACACAATGAAA+CGG + chr8_1:75780490-75780509 None:intergenic 30.0%
TTCACAGTGAATGCATTTAA+GGG + chr8_1:75780581-75780600 None:intergenic 30.0%
TTGAAGATTTCCTAACAAAG+GGG + chr8_1:75780604-75780623 None:intergenic 30.0%
GAGTCTGAATTTCAAAATTG+AGG - chr8_1:75780782-75780801 Msa1214900:intron 30.0%
CCACTTGAAAATGATACTAA+AGG + chr8_1:75780817-75780836 None:intergenic 30.0%
!! CCTTTAGTATCATTTTCAAG+TGG - chr8_1:75780814-75780833 Msa1214900:intron 30.0%
CACACTCTTTAATCTCTATT+TGG - chr8_1:75780891-75780910 Msa1214900:intron 30.0%
TAACCATCTAAATCAAGAGA+AGG + chr8_1:75781086-75781105 None:intergenic 30.0%
GTTATGACCTGGAAAATTAA+GGG - chr8_1:75781102-75781121 Msa1214900:intron 30.0%
! GGTGTTTGGATTTCAATTTT+AGG - chr8_1:75781123-75781142 Msa1214900:intron 30.0%
GCATTTGCCAACAAAATTAT+AGG - chr8_1:75781412-75781431 Msa1214900:intron 30.0%
! AATCTCAGAGCTATATTTTG+AGG + chr8_1:75781464-75781483 None:intergenic 30.0%
GAGCCAGAAAAGAAAATTAA+TGG + chr8_1:75781696-75781715 None:intergenic 30.0%
! GCATGTAGTCAAATTTTCAA+TGG + chr8_1:75781840-75781859 None:intergenic 30.0%
! CCTTTTAATGGCTAAAGTTT+GGG + chr8_1:75781918-75781937 None:intergenic 30.0%
! ACCTTTTAATGGCTAAAGTT+TGG + chr8_1:75781919-75781938 None:intergenic 30.0%
! TTTGGAACATTTGGAGGATA+AGG + chr8_1:75779501-75779520 None:intergenic 35.0%
! CAATGGCAATTTGGAACATT+TGG + chr8_1:75779510-75779529 None:intergenic 35.0%
GATGAAGATGCTAGATGAAA+AGG + chr8_1:75779627-75779646 None:intergenic 35.0%
! CTTTTCACATTGCATTTGAC+AGG + chr8_1:75779687-75779706 None:intergenic 35.0%
GGTTGATTAACTACTTTGCA+AGG + chr8_1:75779720-75779739 None:intergenic 35.0%
ACCAAAAGAGACGTATCTAT+AGG - chr8_1:75779753-75779772 Msa1214900:three_prime_UTR 35.0%
! ACCTATAGATACGTCTCTTT+TGG + chr8_1:75779757-75779776 None:intergenic 35.0%
!! TGATGATGATGTTGAGCTTT+TGG - chr8_1:75779848-75779867 Msa1214900:CDS 35.0%
AAGAAGAGACTTGAGAAACA+AGG - chr8_1:75779891-75779910 Msa1214900:intron 35.0%
! ATGCACATTACCTGTTTCTT+TGG + chr8_1:75779934-75779953 None:intergenic 35.0%
TGAAAACTCAGCAAACAAAC+TGG + chr8_1:75780261-75780280 None:intergenic 35.0%
GTGTACAAATTGAGTGAAGT+TGG - chr8_1:75780357-75780376 Msa1214900:intron 35.0%
CCAAACATACACAATGAAAC+GGG + chr8_1:75780489-75780508 None:intergenic 35.0%
AAGAAATCACTTTGACACTG+TGG - chr8_1:75780525-75780544 Msa1214900:intron 35.0%
GTTCACAGTGAATGCATTTA+AGG + chr8_1:75780582-75780601 None:intergenic 35.0%
TTTCAACGACGATAGTATCT+CGG + chr8_1:75780864-75780883 None:intergenic 35.0%
CAATTCTTCACTTGCTTCAT+TGG - chr8_1:75780970-75780989 Msa1214900:CDS 35.0%
CAGGTGTGTTTCATTCAATT+AGG - chr8_1:75780999-75781018 Msa1214900:CDS 35.0%
CAGACATCTTATTCGATGTT+AGG - chr8_1:75781060-75781079 Msa1214900:CDS 35.0%
TGATTTAGATGGTTATGACC+TGG - chr8_1:75781091-75781110 Msa1214900:intron 35.0%
GGTTATGACCTGGAAAATTA+AGG - chr8_1:75781101-75781120 Msa1214900:intron 35.0%
CTGAGGATAATCTATTAGCA+AGG + chr8_1:75781360-75781379 None:intergenic 35.0%
TGCCAACAAAATTATAGGCT+AGG - chr8_1:75781417-75781436 Msa1214900:intron 35.0%
GCCAACAAAATTATAGGCTA+GGG - chr8_1:75781418-75781437 Msa1214900:intron 35.0%
! TCCCTAGCCTATAATTTTGT+TGG + chr8_1:75781422-75781441 None:intergenic 35.0%
! TGAAGACACAAAGGCAATTT+TGG + chr8_1:75781556-75781575 None:intergenic 35.0%
!!! TTTTCTGGCTCACCAAATTT+TGG - chr8_1:75781705-75781724 Msa1214900:CDS 35.0%
!!! TCACCAAATTTTGGTGTCAT+GGG - chr8_1:75781714-75781733 Msa1214900:CDS 35.0%
!! ACCAACAAGCTCATTTTTCA+CGG - chr8_1:75781767-75781786 Msa1214900:CDS 35.0%
TTTAATGGCTAAAGTTTGGG+TGG + chr8_1:75781915-75781934 None:intergenic 35.0%
CCCAAACTTTAGCCATTAAA+AGG - chr8_1:75781915-75781934 Msa1214900:five_prime_UTR 35.0%
!! TTAGCCATTAAAAGGTGTCA+CGG - chr8_1:75781923-75781942 Msa1214900:five_prime_UTR 35.0%
TTGGAGGATAAGGTTGTTGT+TGG + chr8_1:75779491-75779510 None:intergenic 40.0%
! TGGCAATTTGGAACATTTGG+AGG + chr8_1:75779507-75779526 None:intergenic 40.0%
AAGACATGGCAATGGCAATT+TGG + chr8_1:75779519-75779538 None:intergenic 40.0%
ACAGGGTTGTAAGCATATGT+TGG + chr8_1:75779669-75779688 None:intergenic 40.0%
! CTTTTGGTCACACTTAGTGA+TGG + chr8_1:75779741-75779760 None:intergenic 40.0%
ACTCAATGAAAGGACCAAAC+TGG + chr8_1:75779787-75779806 None:intergenic 40.0%
AGTTTGGTCCTTTCATTGAG+TGG - chr8_1:75779786-75779805 Msa1214900:exon 40.0%
GTCCTTTCATTGAGTGGTAA+GGG - chr8_1:75779792-75779811 Msa1214900:exon 40.0%
AACCCTTACCACTCAATGAA+AGG + chr8_1:75779797-75779816 None:intergenic 40.0%
! ATTACCTGTTTCTTTGGTGG+AGG + chr8_1:75779928-75779947 None:intergenic 40.0%
! CACATTACCTGTTTCTTTGG+TGG + chr8_1:75779931-75779950 None:intergenic 40.0%
!!! CTGAGTTTTCAAGTTCAGCA+GGG - chr8_1:75780270-75780289 Msa1214900:intron 40.0%
!! ACTTCAGCTGGTTCTGTATT+AGG - chr8_1:75780405-75780424 Msa1214900:intron 40.0%
!! CTTCAGCTGGTTCTGTATTA+GGG - chr8_1:75780406-75780425 Msa1214900:intron 40.0%
TTCTGTATTAGGGAAAGGCA+AGG - chr8_1:75780416-75780435 Msa1214900:intron 40.0%
CCCGTTTCATTGTGTATGTT+TGG - chr8_1:75780486-75780505 Msa1214900:CDS 40.0%
TTCAACGACGATAGTATCTC+GGG + chr8_1:75780863-75780882 None:intergenic 40.0%
!! CTTGCTTCATTGGTTTCATC+AGG - chr8_1:75780980-75780999 Msa1214900:CDS 40.0%
AGGCCTTCTCTTGATTTAGA+TGG - chr8_1:75781080-75781099 Msa1214900:intron 40.0%
! CCAAACACCCTTAATTTTCC+AGG + chr8_1:75781112-75781131 None:intergenic 40.0%
!! CCTGGAAAATTAAGGGTGTT+TGG - chr8_1:75781109-75781128 Msa1214900:intron 40.0%
TGCGCTTAAGAAAGTTTCTG+AGG + chr8_1:75781377-75781396 None:intergenic 40.0%
!! GGCTGGTTGGTAAACTTAAA+GGG - chr8_1:75781610-75781629 Msa1214900:CDS 40.0%
!!! CTCACCAAATTTTGGTGTCA+TGG - chr8_1:75781713-75781732 Msa1214900:CDS 40.0%
!!! CACCAAATTTTGGTGTCATG+GGG - chr8_1:75781715-75781734 Msa1214900:CDS 40.0%
TTCCTAGATAAAGCTCTGCT+GGG + chr8_1:75781745-75781764 None:intergenic 40.0%
TTTCCTAGATAAAGCTCTGC+TGG + chr8_1:75781746-75781765 None:intergenic 40.0%
TCCGTGAAAAATGAGCTTGT+TGG + chr8_1:75781771-75781790 None:intergenic 40.0%
TTGTTCACTCAAGCTACTGA+AGG - chr8_1:75781867-75781886 Msa1214900:CDS 40.0%
GGTCCTTTCATTGAGTGGTA+AGG - chr8_1:75779791-75779810 Msa1214900:exon 45.0%
AGTTCCTCCACCAAAGAAAC+AGG - chr8_1:75779921-75779940 Msa1214900:intron 45.0%
!!! GCTGAGTTTTCAAGTTCAGC+AGG - chr8_1:75780269-75780288 Msa1214900:intron 45.0%
! TGCAGGGTATCTTCAAGACT+TGG - chr8_1:75780335-75780354 Msa1214900:intron 45.0%
!! GCTGGTTCTGTATTAGGGAA+AGG - chr8_1:75780411-75780430 Msa1214900:intron 45.0%
! GAAAGGCAAGGATGCTGATT+GGG - chr8_1:75780428-75780447 Msa1214900:intron 45.0%
TCACTGTGAACCCCTTTGTT+AGG - chr8_1:75780591-75780610 Msa1214900:intron 45.0%
! AGTATCTCGGGCATGAGTTT+TGG + chr8_1:75780851-75780870 None:intergenic 45.0%
!! GGGCTGGTTGGTAAACTTAA+AGG - chr8_1:75781609-75781628 Msa1214900:CDS 45.0%
TGCCCCATGACACCAAAATT+TGG + chr8_1:75781720-75781739 None:intergenic 45.0%
CGGATCATGAAGTTTGAGCT+TGG - chr8_1:75781787-75781806 Msa1214900:CDS 45.0%
! TCTGCCGTGACACCTTTTAA+TGG + chr8_1:75781930-75781949 None:intergenic 45.0%
!! ATTAAAAGGTGTCACGGCAG+AGG - chr8_1:75781929-75781948 Msa1214900:five_prime_UTR 45.0%
GGAAAGGCAAGGATGCTGAT+TGG - chr8_1:75780427-75780446 Msa1214900:intron 50.0%
CTCAGACTTCTCTTCAGGAC+TGG + chr8_1:75780939-75780958 None:intergenic 50.0%
CAGTCCTGAAGAGAAGTCTG+AGG - chr8_1:75780937-75780956 Msa1214900:intron 50.0%
TCCTGAAGAGAAGTCTGAGG+TGG - chr8_1:75780940-75780959 Msa1214900:intron 50.0%
TCCACCTCAGACTTCTCTTC+AGG + chr8_1:75780944-75780963 None:intergenic 50.0%
GGCAGTTGCTCAGAATGATG+TGG - chr8_1:75781524-75781543 Msa1214900:CDS 50.0%
TGCAGAGGCTGAAGACACAA+AGG + chr8_1:75781565-75781584 None:intergenic 50.0%
CAGCCTCTGCAATTGAGAAG+TGG - chr8_1:75781574-75781593 Msa1214900:CDS 50.0%
GGTCCACTTCTCAATTGCAG+AGG + chr8_1:75781580-75781599 None:intergenic 50.0%
AGAAGTGGACCTCCTTGACA+GGG - chr8_1:75781589-75781608 Msa1214900:CDS 50.0%
TTTACCAACCAGCCCTGTCA+AGG + chr8_1:75781604-75781623 None:intergenic 50.0%
! GTCCCAGCAGAGCTTTATCT+AGG - chr8_1:75781740-75781759 Msa1214900:CDS 50.0%
GAGAAGTGGACCTCCTTGAC+AGG - chr8_1:75781588-75781607 Msa1214900:CDS 55.0%
! ACCTCCTTGACAGGGCTGGT+TGG - chr8_1:75781597-75781616 Msa1214900:CDS 60.0%
ACCAACCAGCCCTGTCAAGG+AGG + chr8_1:75781601-75781620 None:intergenic 60.0%
GTGGACCTCCTTGACAGGGC+TGG - chr8_1:75781593-75781612 Msa1214900:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 75779467 75781968 75779467 ID=Msa1214900;Name=Msa1214900
chr8_1 mRNA 75779467 75781968 75779467 ID=Msa1214900-mRNA-1;Parent=Msa1214900;Name=Msa1214900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|1|1|4|330|238
chr8_1 exon 75779467 75779906 75779467 ID=Msa1214900-mRNA-1:exon:26000;Parent=Msa1214900-mRNA-1
chr8_1 exon 75780434 75780506 75780434 ID=Msa1214900-mRNA-1:exon:25999;Parent=Msa1214900-mRNA-1
chr8_1 exon 75780956 75781095 75780956 ID=Msa1214900-mRNA-1:exon:25998;Parent=Msa1214900-mRNA-1
chr8_1 exon 75781493 75781968 75781493 ID=Msa1214900-mRNA-1:exon:25997;Parent=Msa1214900-mRNA-1
chr8_1 five_prime_UTR 75781887 75781968 75781887 ID=Msa1214900-mRNA-1:five_prime_utr;Parent=Msa1214900-mRNA-1
chr8_1 CDS 75781493 75781886 75781493 ID=Msa1214900-mRNA-1:cds;Parent=Msa1214900-mRNA-1
chr8_1 CDS 75780956 75781095 75780956 ID=Msa1214900-mRNA-1:cds;Parent=Msa1214900-mRNA-1
chr8_1 CDS 75780434 75780506 75780434 ID=Msa1214900-mRNA-1:cds;Parent=Msa1214900-mRNA-1
chr8_1 CDS 75779797 75779906 75779797 ID=Msa1214900-mRNA-1:cds;Parent=Msa1214900-mRNA-1
chr8_1 three_prime_UTR 75779467 75779796 75779467 ID=Msa1214900-mRNA-1:three_prime_utr;Parent=Msa1214900-mRNA-1
Gene Sequence

>Msa1214900

ATGCGCCAAAAAATAAACAAAACAAAAGAGAGAGAAAAAAAAAACATGGCATCAAATTTTCTCTCAACAGCAAACCCTTTTCATCTAGCATCTTCATCACAATCTTCATTAGTAACACCAACATATGCTTACAACCCTGTCAAATGCAATGTGAAAAGACAATTAACTCCTTGCAAAGTAGTTAATCAACCATCACTAAGTGTGACCAAAAGAGACGTATCTATAGGTTTTATTACCAGTTTGGTCCTTTCATTGAGTGGTAAGGGTTTGTTTGATGCTAATGCTGCAATACTTGAAGCTGATGATGATGTTGAGCTTTTGGAAAAAGTAAAGAAAGATAGAAAGAAGAGACTTGAGAAACAAGGTGTCATTAGTTCCTCCACCAAAGAAACAGGGTATCTTCAAGACTTGGTGTACAAATTGAGTGAAGTTGGTCAAGCAATTGAAAAAAATGATCTAACTTCAGCTGGTTCTGTATTAGGGAAAGGCAAGGATGCTGATTGGGTGCAAAAAGCTAATATAGCTTTGAATAAGCTGAGCTCCAGTCCTGAAGAGAAGTCTGAGGTGGACACATTCAATTCTTCACTTGCTTCATTGGTTTCATCAGTTGCTCAGAATGATGTGGAGTCGTCCAAAATTGCCTTTGTGTCTTCAGCCTCTGCAATTGAGAAGTGGACCTCCTTGACAGGGCTGGTTGGTAAACTTAAAGGGATTTGA

Protein sequence

>Msa1214900

MRQKINKTKEREKKNMASNFLSTANPFHLASSSQSSLVTPTYAYNPVKCNVKRQLTPCKVVNQPSLSVTKRDVSIGFITSLVLSLSGKGLFDANAAILEADDDVELLEKVKKDRKKRLEKQGVISSSTKETGYLQDLVYKLSEVGQAIEKNDLTSAGSVLGKGKDADWVQKANIALNKLSSSPEEKSEVDTFNSSLASLVSSVAQNDVESSKIAFVSSASAIEKWTSLTGLVGKLKGI*