AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0429530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429530 MtrunA17_Chr3g0133221 92.419 277 2 1 1 277 1 258 0.0 520
Msa0429530 MtrunA17_Chr8g0367701 71.667 180 51 0 97 276 90 269 2.63e-98 289
Msa0429530 MtrunA17_Chr7g0251801 47.475 198 94 3 78 274 86 274 3.83e-64 202
Msa0429530 MtrunA17_Chr2g0315771 47.030 202 102 3 79 275 25 226 3.73e-61 193
Msa0429530 MtrunA17_Chr1g0162171 39.623 159 95 1 117 274 62 220 1.52e-43 147
Msa0429530 MtrunA17_Chr6g0481891 38.994 159 96 1 117 274 38 196 2.03e-42 144
Msa0429530 MtrunA17_Chr8g0388871 37.654 162 97 2 116 274 22 182 3.14e-40 138
Msa0429530 MtrunA17_Chr1g0212091 36.413 184 107 3 93 274 43 218 3.77e-40 139
Msa0429530 MtrunA17_Chr1g0212121 35.849 159 101 1 117 274 57 215 4.72e-37 130
Msa0429530 MtrunA17_Chr1g0212171 35.625 160 102 1 116 274 59 218 1.18e-36 130
Msa0429530 MtrunA17_Chr1g0212181 35.583 163 103 2 117 277 57 219 4.17e-35 126
Msa0429530 MtrunA17_Chr1g0212111 43.396 106 59 1 170 274 49 154 3.48e-25 98.6
Msa0429530 MtrunA17_Chr1g0212131 41.071 56 33 0 219 274 6 61 6.75e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429530 AT1G28200.1 71.605 243 61 2 35 277 23 257 8.71e-123 351
Msa0429530 AT1G28200.2 71.605 243 61 2 35 277 23 257 8.71e-123 351
Msa0429530 AT2G22475.1 72.727 198 53 1 80 276 96 293 8.19e-110 320
Msa0429530 AT2G22475.2 72.603 146 39 1 80 224 96 241 1.52e-76 233
Msa0429530 AT4G40100.1 57.789 199 47 4 80 276 55 218 6.83e-73 223
Msa0429530 AT5G13200.1 41.473 258 130 6 18 270 15 256 3.77e-60 192
Msa0429530 AT4G01600.1 42.211 199 108 3 80 274 29 224 1.18e-54 177
Msa0429530 AT4G01600.3 42.135 178 101 1 99 274 8 185 1.08e-51 168
Msa0429530 AT4G01600.2 41.206 199 105 4 80 274 29 219 1.47e-50 166
Msa0429530 AT5G23350.1 34.259 216 133 4 64 274 2 213 5.44e-40 139
Msa0429530 AT5G23360.1 36.875 160 98 2 117 274 47 205 1.33e-38 135
Msa0429530 AT5G13200.2 39.234 209 106 6 18 221 15 207 1.55e-38 135
Msa0429530 AT5G23370.1 33.333 219 131 6 64 274 2 213 4.04e-38 134
Msa0429530 AT5G08350.1 33.831 201 116 4 76 274 27 212 4.33e-38 134

Find 105 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGTTGTTACTTGTTTC+TGG 0.126004 3_2:-80984993 Msa0429530:three_prime_UTR
AATAAATAATTTGACGGTTT+TGG 0.134533 3_2:-80989745 Msa0429530:five_prime_UTR
CCGTTGACAATCATGAATTT+TGG 0.145817 3_2:-80985236 Msa0429530:CDS
TGAAAGATGTTCTTGGAAAA+TGG 0.239709 3_2:-80989169 Msa0429530:CDS
AGCAAGATCTTCAGCCTTCT+TGG 0.287689 3_2:+80989124 None:intergenic
GAATCAGAGTCTTGGGGTTT+GGG 0.291767 3_2:+80989473 None:intergenic
TTGTGTTGGTGGGTTGGACT+TGG 0.298593 3_2:+80989510 None:intergenic
ACGTCGTTTGGGTCGAGTTT+AGG 0.310396 3_2:+80989419 None:intergenic
TTTAGGATACGGAGCGTAAT+CGG 0.313258 3_2:+80989436 None:intergenic
GGTGGTGGTGCGACGTCGTT+TGG 0.326020 3_2:+80989407 None:intergenic
ATATTATTACATTCTAAATC+TGG 0.330201 3_2:-80984943 Msa0429530:three_prime_UTR
AAATGCCAATAGGTTCCTTC+AGG 0.335160 3_2:-80989885 Msa0429530:five_prime_UTR
AGAATCAGAGTCTTGGGGTT+TGG 0.350975 3_2:+80989472 None:intergenic
ATTTAAACATGATAGTTATA+TGG 0.356108 3_2:-80984890 Msa0429530:three_prime_UTR
GATTCGGTGAAAGATGTTCT+TGG 0.357881 3_2:-80989176 Msa0429530:CDS
TGCTACCTCTCCACCTCTGC+TGG 0.362383 3_2:-80987875 Msa0429530:CDS
ATAGGTTCCTTCAGGGTTAG+AGG 0.371485 3_2:-80989877 Msa0429530:five_prime_UTR
CTCTTAGCAGAAGTGGGTTC+GGG 0.375941 3_2:+80989296 None:intergenic
GACTCAATGGAGCTATTATA+AGG 0.381490 3_2:-80987768 Msa0429530:intron
GCAGAAGTGGGTTCGGGAAC+TGG 0.387440 3_2:+80989302 None:intergenic
TTAGGATACGGAGCGTAATC+GGG 0.390438 3_2:+80989437 None:intergenic
TACTTCCTTAGTCTAGTTTG+TGG 0.390817 3_2:-80985043 Msa0429530:three_prime_UTR
GGGTTGGCTTTGCTTGTGGA+TGG 0.392668 3_2:+80985285 None:intergenic
CACCTCTGCTGGACCTGTCA+TGG 0.396719 3_2:-80987864 Msa0429530:CDS
GAAAGATGTTCTTGGAAAAT+GGG 0.402168 3_2:-80989168 Msa0429530:CDS
AGAGTCTTGGGGTTTGGGAT+TGG 0.404551 3_2:+80989478 None:intergenic
TGCTCAGGGAACAAAAGTTC+TGG 0.404565 3_2:-80987975 Msa0429530:CDS
ATCAACACAGACCTCATGTT+TGG 0.406142 3_2:+80985114 None:intergenic
ACTCTTAGCAGAAGTGGGTT+CGG 0.407099 3_2:+80989295 None:intergenic
AGAGTGAGAATCAGAGTCTT+GGG 0.416127 3_2:+80989466 None:intergenic
TTCCTTCAGGGTTAGAGGTT+AGG 0.421275 3_2:-80989872 Msa0429530:five_prime_UTR
TTGTGTTTGTGTTGGTGGGT+TGG 0.423984 3_2:+80989504 None:intergenic
ATTGAGTCTGGTCACCAGTC+TGG 0.437061 3_2:+80987783 None:intergenic
AAGAAGGCTGAAGATCTTGC+TGG 0.439141 3_2:-80989122 Msa0429530:CDS
GGTGTTTGTGTTTGTGTTGG+TGG 0.440766 3_2:+80989499 None:intergenic
GGTTGGCTTTGCTTGTGGAT+GGG 0.441303 3_2:+80985286 None:intergenic
TTCCATAAAACAGTGAAAAC+AGG 0.443896 3_2:-80988031 Msa0429530:intron
TCAGGGTTAGAGGTTAGGTT+AGG 0.447915 3_2:-80989867 Msa0429530:five_prime_UTR
AGTCAAAATAAATAATTTGA+CGG 0.449268 3_2:-80989751 Msa0429530:five_prime_UTR
GTGTTTGTGTTTGTGTTGGT+GGG 0.451705 3_2:+80989500 None:intergenic
TGCTGTGGGAAGAATTGCTC+AGG 0.454151 3_2:-80987990 Msa0429530:CDS
GGGCATGGTGGTGGCAGCAT+CGG 0.455840 3_2:+80989355 None:intergenic
TGTGTTGGTGGGTTGGACTT+GGG 0.461657 3_2:+80989511 None:intergenic
TATAATAGCTCCATTGAGTC+TGG 0.472016 3_2:+80987771 None:intergenic
GTGGGTTCGGGAACTGGTGC+AGG 0.472656 3_2:+80989308 None:intergenic
CTGAAACGTGAATACGTGAA+TGG 0.474225 3_2:+80989664 None:intergenic
TGGACTTGGGCTTGAACATG+AGG 0.476251 3_2:+80989524 None:intergenic
CTAACCCTGAAGGAACCTAT+TGG 0.480999 3_2:+80989880 None:intergenic
GGGATTAGATTCGGCGGGCA+TGG 0.481538 3_2:+80989340 None:intergenic
ACCTCTGCTGGACCTGTCAT+GGG 0.481952 3_2:-80987863 Msa0429530:CDS
GCAGTCTCGCTGATACACTA+TGG 0.482340 3_2:-80985160 Msa0429530:exon
TCGATCGATTTGTTGTAAGT+TGG 0.489993 3_2:-80984917 Msa0429530:three_prime_UTR
ATTGGTGTTTGTGTTTGTGT+TGG 0.490015 3_2:+80989496 None:intergenic
AGATTCGGCGGGCATGGTGG+TGG 0.492264 3_2:+80989346 None:intergenic
CATGGTGGTGGCAGCATCGG+TGG 0.493757 3_2:+80989358 None:intergenic
GCGCGAGATTCAGTAGCAAC+AGG 0.494862 3_2:+80989380 None:intergenic
AGTAGGGTTGGCTTTGCTTG+TGG 0.497012 3_2:+80985281 None:intergenic
GTGGTGGTGCGACGTCGTTT+GGG 0.498600 3_2:+80989408 None:intergenic
CAGCTCCACAAACTAGACTA+AGG 0.505325 3_2:+80985038 None:intergenic
GAGAGTGAGAATCAGAGTCT+TGG 0.511071 3_2:+80989465 None:intergenic
AACTGGTGCAGGAGAGACAT+AGG 0.514578 3_2:+80989319 None:intergenic
ATTGTTGACTTGAGGAGGAT+CGG 0.514814 3_2:+80989583 None:intergenic
TTCAATTCAAACTCAAGTTG+AGG 0.515568 3_2:+80989633 None:intergenic
TGAAACGTGAATACGTGAAT+GGG 0.516841 3_2:+80989665 None:intergenic
TCAGTAGCAACAGGTGGTGG+TGG 0.526626 3_2:+80989389 None:intergenic
GAAATTACTCTTAGCAGAAG+TGG 0.529017 3_2:+80989289 None:intergenic
GTAGCAACAGGTGGTGGTGG+TGG 0.530974 3_2:+80989392 None:intergenic
GATTCAGTAGCAACAGGTGG+TGG 0.532264 3_2:+80989386 None:intergenic
AGACTGGTGACCAGACTCAA+TGG 0.534492 3_2:-80987781 Msa0429530:CDS
AAATTACTCTTAGCAGAAGT+GGG 0.535463 3_2:+80989290 None:intergenic
AGAGACATAGGGATTAGATT+CGG 0.541864 3_2:+80989331 None:intergenic
TTTGGGTCGAGTTTAGGATA+CGG 0.542371 3_2:+80989425 None:intergenic
CTCATATTGTTGACTTGAGG+AGG 0.542882 3_2:+80989578 None:intergenic
CATGACAGGTCCAGCAGAGG+TGG 0.545232 3_2:+80987865 None:intergenic
AATGCCAATAGGTTCCTTCA+GGG 0.546428 3_2:-80989884 Msa0429530:five_prime_UTR
ACTGCTCGCAGCTGATGCAA+TGG 0.553859 3_2:+80985312 None:intergenic
TCACCAGTCTGGTAAGAAAG+TGG 0.556592 3_2:+80987794 None:intergenic
TGAACATGAGGTTGAACTTG+AGG 0.558806 3_2:+80989536 None:intergenic
AACCCACTTTCTTACCAGAC+TGG 0.563921 3_2:-80987797 Msa0429530:CDS
CCAAAATTCATGATTGTCAA+CGG 0.566250 3_2:+80985236 None:intergenic
ACATAGGGATTAGATTCGGC+GGG 0.570583 3_2:+80989335 None:intergenic
TAGGATACGGAGCGTAATCG+GGG 0.571711 3_2:+80989438 None:intergenic
ACAGCAGCATCAGCAAAACT+AGG 0.577655 3_2:+80988007 None:intergenic
AAATACAAGACTCCCATGAC+AGG 0.580237 3_2:+80987851 None:intergenic
GACATAGGGATTAGATTCGG+CGG 0.580305 3_2:+80989334 None:intergenic
CTGCTCATATTGTTGACTTG+AGG 0.581802 3_2:+80989575 None:intergenic
CAGGTCCAGCAGAGGTGGAG+AGG 0.582547 3_2:+80987870 None:intergenic
ATTAGATTCGGCGGGCATGG+TGG 0.585883 3_2:+80989343 None:intergenic
AGCTGCTGAAGCTACCAAGA+AGG 0.592291 3_2:-80989138 Msa0429530:CDS
AAAGATGTTCTTGGAAAATG+GGG 0.592681 3_2:-80989167 Msa0429530:CDS
GTCAACAATATGAGCAGTGG+TGG 0.593987 3_2:-80989569 Msa0429530:exon
CACCAGTCTGGTAAGAAAGT+GGG 0.607437 3_2:+80987795 None:intergenic
GGAACAAAAGTTCTGGCAGA+AGG 0.613260 3_2:-80987968 Msa0429530:CDS
AACCTAACCTCTAACCCTGA+AGG 0.623990 3_2:+80989870 None:intergenic
ACTGGTGCAGGAGAGACATA+GGG 0.634538 3_2:+80989320 None:intergenic
TCCCATGACAGGTCCAGCAG+AGG 0.644056 3_2:+80987862 None:intergenic
CAAGTCAACAATATGAGCAG+TGG 0.644143 3_2:-80989572 Msa0429530:exon
GAGTGAGAATCAGAGTCTTG+GGG 0.647869 3_2:+80989467 None:intergenic
ACAAAAGTTCTGGCAGAAGG+TGG 0.648034 3_2:-80987965 Msa0429530:CDS
AAGATCTTGCTGGAAACATG+TGG 0.657196 3_2:-80989112 Msa0429530:CDS
ACATGAGGTTGAACTTGAGG+AGG 0.662022 3_2:+80989539 None:intergenic
AGGATACGGAGCGTAATCGG+GGG 0.674476 3_2:+80989439 None:intergenic
CGAGATTCAGTAGCAACAGG+TGG 0.675679 3_2:+80989383 None:intergenic
GCTGTGGGAAGAATTGCTCA+GGG 0.687709 3_2:-80987989 Msa0429530:CDS
CACGTAGTATACCAAACATG+AGG 0.689654 3_2:-80985125 Msa0429530:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATATATTAAATTTT+AGG - chr3_2:80988736-80988755 Msa0429530:intron 0.0%
!!! AAATAATATATTAAATTTTA+GGG - chr3_2:80988737-80988756 Msa0429530:intron 0.0%
!!! TTTTGTAATGTTTATTTTAA+GGG - chr3_2:80986451-80986470 Msa0429530:intron 10.0%
!! GCTATAAAATTAATTAAAAT+AGG + chr3_2:80986647-80986666 None:intergenic 10.0%
!!! ATTTTAATTAATTTTATAGC+TGG - chr3_2:80986647-80986666 Msa0429530:intron 10.0%
!! AAAAAAAAGTAAAAATGCAA+CGG - chr3_2:80984959-80984978 Msa0429530:three_prime_UTR 15.0%
!! AGTCAAAATAAATAATTTGA+CGG - chr3_2:80985018-80985037 Msa0429530:three_prime_UTR 15.0%
!! CTTAAATGAATTTCAATAAT+TGG + chr3_2:80985721-80985740 None:intergenic 15.0%
!!! CTTTTGTAATGTTTATTTTA+AGG - chr3_2:80986450-80986469 Msa0429530:intron 15.0%
!!! TGAAATATTTGACTTTTTTA+TGG + chr3_2:80986534-80986553 None:intergenic 15.0%
!!! TATTCATAAAATTTTGCTAT+AGG + chr3_2:80987186-80987205 None:intergenic 15.0%
!!! TTTAATTAACATGAGATTTT+TGG - chr3_2:80987360-80987379 Msa0429530:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr3_2:80987482-80987501 None:intergenic 15.0%
!!! TAGTTTTATAAGTAATACTT+TGG + chr3_2:80987585-80987604 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr3_2:80987609-80987628 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr3_2:80987608-80987627 Msa0429530:intron 15.0%
!!! TACATGTTTATTTTTTTTGA+AGG - chr3_2:80987942-80987961 Msa0429530:CDS 15.0%
!! ACAAAAGGTTATAAAATTTA+GGG + chr3_2:80988339-80988358 None:intergenic 15.0%
!! AACAAAAGGTTATAAAATTT+AGG + chr3_2:80988340-80988359 None:intergenic 15.0%
!! AACAAAGGTTATAAAATTTA+GGG + chr3_2:80988950-80988969 None:intergenic 15.0%
!! AATGTAATCTATTAATCATA+CGG + chr3_2:80989260-80989279 None:intergenic 15.0%
!! ATATTATTACATTCTAAATC+TGG - chr3_2:80989826-80989845 Msa0429530:five_prime_UTR 15.0%
!! ATTTAAACATGATAGTTATA+TGG - chr3_2:80989879-80989898 Msa0429530:five_prime_UTR 15.0%
!!! AATAAATAATTTGACGGTTT+TGG - chr3_2:80985024-80985043 Msa0429530:three_prime_UTR 20.0%
!!! ATAAATAATTTGACGGTTTT+GGG - chr3_2:80985025-80985044 Msa0429530:three_prime_UTR 20.0%
!! TAATTGGAAGTAAAAGAATT+AGG + chr3_2:80985705-80985724 None:intergenic 20.0%
!! GCTATTCAATAAATATTTCT+TGG - chr3_2:80985740-80985759 Msa0429530:intron 20.0%
!! AATTAGAATAGATTGAATGA+AGG - chr3_2:80986219-80986238 Msa0429530:intron 20.0%
!! ATTAGAATAGATTGAATGAA+GGG - chr3_2:80986220-80986239 Msa0429530:intron 20.0%
!!! TAATCTCTACACTTTTTTAA+TGG + chr3_2:80986299-80986318 None:intergenic 20.0%
!! TATTTATGTAATCAAAGCAT+CGG + chr3_2:80986561-80986580 None:intergenic 20.0%
!!! ATTAATTTTATAGCTGGAAA+TGG - chr3_2:80986653-80986672 Msa0429530:intron 20.0%
!! TTGTTCTTTAATAACTGATT+TGG - chr3_2:80987058-80987077 Msa0429530:intron 20.0%
!! TAATCATCCAAAATAATTTC+AGG + chr3_2:80987405-80987424 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr3_2:80987522-80987541 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr3_2:80987599-80987618 Msa0429530:intron 20.0%
!!! ATAGATTTTAGATGTATCTA+GGG - chr3_2:80987885-80987904 Msa0429530:CDS 20.0%
!! TAATTCCTCGAAAAAAATAT+TGG + chr3_2:80987924-80987943 None:intergenic 20.0%
!! TATCTGATTATAACATTTGT+TGG - chr3_2:80988188-80988207 Msa0429530:intron 20.0%
!! ATCTGATTATAACATTTGTT+GGG - chr3_2:80988189-80988208 Msa0429530:intron 20.0%
!!! TACTTTTAATCACAACAAAA+AGG + chr3_2:80988578-80988597 None:intergenic 20.0%
!! CAAGCAATTTATATTAAGAT+TGG - chr3_2:80988645-80988664 Msa0429530:intron 20.0%
!! CAACAAAGGTTATAAAATTT+AGG + chr3_2:80988951-80988970 None:intergenic 20.0%
!! TTGAGAATAAATGTTATCTT+TGG - chr3_2:80989285-80989304 Msa0429530:intron 20.0%
!!! GTCATATTTTTTCTATTGTT+TGG - chr3_2:80989388-80989407 Msa0429530:CDS 20.0%
!!! TCTGTATAAATTTTTCAGTA+GGG + chr3_2:80989507-80989526 None:intergenic 20.0%
!!! ATCTGTATAAATTTTTCAGT+AGG + chr3_2:80989508-80989527 None:intergenic 20.0%
!!! AATCATGAATTTTGGTTTAT+GGG - chr3_2:80989541-80989560 Msa0429530:CDS 20.0%
!! TAAAGTATCTGCAAAATCAA+AGG + chr3_2:80985573-80985592 None:intergenic 25.0%
!! TTTTGCAGATACTTTAGATT+CGG - chr3_2:80985577-80985596 Msa0429530:intron 25.0%
!! ATTTTTACTTTGTATGTGCA+TGG - chr3_2:80985832-80985851 Msa0429530:intron 25.0%
! CTAATTACGACAAAATTTAG+AGG + chr3_2:80986205-80986224 None:intergenic 25.0%
!! GGTTTCTCTTATAATTTTCT+AGG + chr3_2:80986278-80986297 None:intergenic 25.0%
! TAAAATAGGGAAATGTTAAC+CGG + chr3_2:80986633-80986652 None:intergenic 25.0%
! TCAGTTATTAAAGAACAAAG+CGG + chr3_2:80987056-80987075 None:intergenic 25.0%
!! TGATTATTTCTCAATACTAG+AGG - chr3_2:80987120-80987139 Msa0429530:intron 25.0%
! ATTAAAAAATCCTCAAATGC+TGG + chr3_2:80987346-80987365 None:intergenic 25.0%
!! CATCTAAAATCTATGAGTAT+TGG + chr3_2:80987879-80987898 None:intergenic 25.0%
!! CATAGATTTTAGATGTATCT+AGG - chr3_2:80987884-80987903 Msa0429530:CDS 25.0%
!!! TTTTTTTGAAGGATTTTTCG+AGG - chr3_2:80987953-80987972 Msa0429530:CDS 25.0%
!!! GAACAAGTAGCTATTTTTTT+TGG + chr3_2:80988073-80988092 None:intergenic 25.0%
!! TCTGATTATAACATTTGTTG+GGG - chr3_2:80988190-80988209 Msa0429530:intron 25.0%
! AGATATGTTGTATTGAGAAA+TGG - chr3_2:80988802-80988821 Msa0429530:intron 25.0%
!! ACATAATTCTTTTGATGTTG+AGG - chr3_2:80989126-80989145 Msa0429530:CDS 25.0%
!! CATAATTCTTTTGATGTTGA+GGG - chr3_2:80989127-80989146 Msa0429530:CDS 25.0%
! GAATAAATGTTATCTTTGGA+TGG - chr3_2:80989289-80989308 Msa0429530:intron 25.0%
!!! TATAAATTTTTCAGTAGGGT+TGG + chr3_2:80989503-80989522 None:intergenic 25.0%
!!! CAATCATGAATTTTGGTTTA+TGG - chr3_2:80989540-80989559 Msa0429530:CDS 25.0%
!!! TTTCATGTTTTTGTGAATTG+AGG + chr3_2:80989688-80989707 None:intergenic 25.0%
TCAAAAAACGAAATGCCAAT+AGG - chr3_2:80984874-80984893 Msa0429530:three_prime_UTR 30.0%
! TTCAATTCAAACTCAAGTTG+AGG + chr3_2:80985139-80985158 None:intergenic 30.0%
AAATTACTCTTAGCAGAAGT+GGG + chr3_2:80985482-80985501 None:intergenic 30.0%
TATCTGCAAAATCAAAGGAT+AGG + chr3_2:80985568-80985587 None:intergenic 30.0%
TGAAAGATGTTCTTGGAAAA+TGG - chr3_2:80985600-80985619 Msa0429530:intron 30.0%
GAAAGATGTTCTTGGAAAAT+GGG - chr3_2:80985601-80985620 Msa0429530:intron 30.0%
AAAGATGTTCTTGGAAAATG+GGG - chr3_2:80985602-80985621 Msa0429530:intron 30.0%
!!! CGCTTATTTTATTCTAGTGT+TGG + chr3_2:80986037-80986056 None:intergenic 30.0%
AAGTGTAGAGATTAATGAGT+TGG - chr3_2:80986305-80986324 Msa0429530:intron 30.0%
! AGAGATTAATGAGTTGGATA+AGG - chr3_2:80986311-80986330 Msa0429530:intron 30.0%
! AAGCTTTATCCAATTAAGTG+GGG + chr3_2:80986385-80986404 None:intergenic 30.0%
! CAAGCTTTATCCAATTAAGT+GGG + chr3_2:80986386-80986405 None:intergenic 30.0%
AGAAAACACAGAAAGTAAAC+TGG - chr3_2:80986680-80986699 Msa0429530:intron 30.0%
GTCAAAATAGCTCAAATGAA+TGG + chr3_2:80986717-80986736 None:intergenic 30.0%
TTCCATAAAACAGTGAAAAC+AGG - chr3_2:80986738-80986757 Msa0429530:intron 30.0%
GTAATGCAGTATACATATCA+TGG + chr3_2:80987086-80987105 None:intergenic 30.0%
AATGACTCCAACTAAATTTC+CGG + chr3_2:80987241-80987260 None:intergenic 30.0%
! ATTGATATTTGAGGTTCCAA+GGG + chr3_2:80987296-80987315 None:intergenic 30.0%
ACTGACATGATTGATATTTG+AGG + chr3_2:80987305-80987324 None:intergenic 30.0%
!!! GATTTTTGGAATTCGAAGAA+AGG - chr3_2:80987374-80987393 Msa0429530:intron 30.0%
!! TATTTTGGATGATTACCCTT+AGG - chr3_2:80987410-80987429 Msa0429530:intron 30.0%
! ATTTTGGATGATTACCCTTA+GGG - chr3_2:80987411-80987430 Msa0429530:intron 30.0%
GTATTACTTAAGATCCCTAA+GGG + chr3_2:80987428-80987447 None:intergenic 30.0%
AGTATTACTTAAGATCCCTA+AGG + chr3_2:80987429-80987448 None:intergenic 30.0%
AATGATTAAGAGAAAGAGGA+TGG + chr3_2:80987642-80987661 None:intergenic 30.0%
ATGCAATGATTAAGAGAAAG+AGG + chr3_2:80987646-80987665 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr3_2:80987690-80987709 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr3_2:80987691-80987710 Msa0429530:intron 30.0%
! AAATCAAGGATTCCCTTTTA+CGG - chr3_2:80987767-80987786 Msa0429530:intron 30.0%
! TCCAAATTTGAAGTATGAGT+GGG - chr3_2:80987822-80987841 Msa0429530:CDS 30.0%
TATTGGACATGTACTAGTAT+CGG + chr3_2:80987862-80987881 None:intergenic 30.0%
! ATTTTAGATGTATCTAGGGA+AGG - chr3_2:80987889-80987908 Msa0429530:CDS 30.0%
! TTTTAGATGTATCTAGGGAA+GGG - chr3_2:80987890-80987909 Msa0429530:CDS 30.0%
!!! ATGCTCCAATATTTTTTTCG+AGG - chr3_2:80987916-80987935 Msa0429530:CDS 30.0%
! TTGGAGTAGTGTTTAAAATG+TGG + chr3_2:80987991-80988010 None:intergenic 30.0%
AAACACTACTCCAATACAAT+TGG - chr3_2:80987997-80988016 Msa0429530:CDS 30.0%
AACACTACTCCAATACAATT+GGG - chr3_2:80987998-80988017 Msa0429530:CDS 30.0%
ATGATGTATCCCAATTGTAT+TGG + chr3_2:80988010-80988029 None:intergenic 30.0%
! TTGTTCAACCTTTTTCTTCA+TGG - chr3_2:80988087-80988106 Msa0429530:intron 30.0%
! CTGATTATAACATTTGTTGG+GGG - chr3_2:80988191-80988210 Msa0429530:intron 30.0%
! TGATTATAACATTTGTTGGG+GGG - chr3_2:80988192-80988211 Msa0429530:intron 30.0%
! TAACGTAAACCTACTACTTT+TGG - chr3_2:80988260-80988279 Msa0429530:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + chr3_2:80988272-80988291 None:intergenic 30.0%
AGTCTAGTTACATCAACAAA+AGG + chr3_2:80988354-80988373 None:intergenic 30.0%
AAGGAACTCTTAAAAACTCA+GGG + chr3_2:80988392-80988411 None:intergenic 30.0%
TAAGGAACTCTTAAAAACTC+AGG + chr3_2:80988393-80988412 None:intergenic 30.0%
ACTTTGAACCAAACCAATAT+CGG + chr3_2:80988432-80988451 None:intergenic 30.0%
! CATAATTCTTTTGATGTCGA+GGG - chr3_2:80988483-80988502 Msa0429530:intron 30.0%
TATTGAGAAATGGTAAAACG+TGG - chr3_2:80988812-80988831 Msa0429530:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + chr3_2:80988272-80988291 None:intergenic 30.0%
TAACCTTTGTTGATGTAACT+AGG - chr3_2:80988959-80988978 Msa0429530:intron 30.0%
TTTGAACCAAACCAATATTG+GGG + chr3_2:80989074-80989093 None:intergenic 30.0%
CTTTGAACCAAACCAATATT+GGG + chr3_2:80989075-80989094 None:intergenic 30.0%
ACTTTGAACCAAACCAATAT+TGG + chr3_2:80988432-80988451 None:intergenic 30.0%
CATCAAAAGAATTATGTGTC+TGG + chr3_2:80989123-80989142 None:intergenic 30.0%
!! TTTTGATGTTGAGGGTATAA+AGG - chr3_2:80989135-80989154 Msa0429530:CDS 30.0%
AGGATACAATGAGTAAGAAT+GGG + chr3_2:80989206-80989225 None:intergenic 30.0%
GATTAGTGACTACACTTATA+TGG - chr3_2:80989313-80989332 Msa0429530:CDS 30.0%
! AGCTTTTCATCTTATGCATT+AGG - chr3_2:80989426-80989445 Msa0429530:CDS 30.0%
! TTTTCATCTTATGCATTAGG+TGG - chr3_2:80989429-80989448 Msa0429530:CDS 30.0%
CCAAAATTCATGATTGTCAA+CGG + chr3_2:80989536-80989555 None:intergenic 30.0%
TGAAACGTGAATACGTGAAT+GGG + chr3_2:80985107-80985126 None:intergenic 35.0%
! ATTGGTGTTTGTGTTTGTGT+TGG + chr3_2:80985276-80985295 None:intergenic 35.0%
AGAGACATAGGGATTAGATT+CGG + chr3_2:80985441-80985460 None:intergenic 35.0%
GAAATTACTCTTAGCAGAAG+TGG + chr3_2:80985483-80985502 None:intergenic 35.0%
TTGTGATCAAGAGAAGATAG+AGG - chr3_2:80985887-80985906 Msa0429530:intron 35.0%
!! TTGTATGTGAAGGAAGTGTT+GGG - chr3_2:80986001-80986020 Msa0429530:intron 35.0%
TAGAATTAGAGAGAGAGTTG+AGG - chr3_2:80986107-80986126 Msa0429530:intron 35.0%
CAGAAAAGATGCTAGAAACT+AGG - chr3_2:80986142-80986161 Msa0429530:intron 35.0%
TTTATCCAATTAAGTGGGGT+AGG + chr3_2:80986381-80986400 None:intergenic 35.0%
! CCAAGCTTTATCCAATTAAG+TGG + chr3_2:80986387-80986406 None:intergenic 35.0%
CCACTTAATTGGATAAAGCT+TGG - chr3_2:80986384-80986403 Msa0429530:intron 35.0%
!! AAATGTCTTAAAAAGTGCCC+CGG - chr3_2:80986602-80986621 Msa0429530:intron 35.0%
! GACCTGTTTTCACTGTTTTA+TGG + chr3_2:80986743-80986762 None:intergenic 35.0%
!!! GTTTTAAGAAGTTGTTCCTC+TGG + chr3_2:80986867-80986886 None:intergenic 35.0%
TATAATAGCTCCATTGAGTC+TGG + chr3_2:80987001-80987020 None:intergenic 35.0%
GACTCAATGGAGCTATTATA+AGG - chr3_2:80987001-80987020 Msa0429530:intron 35.0%
AAATTTCCGGGACACAAATT+GGG + chr3_2:80987228-80987247 None:intergenic 35.0%
TAAATTTCCGGGACACAAAT+TGG + chr3_2:80987229-80987248 None:intergenic 35.0%
ATGACTCCAACTAAATTTCC+GGG + chr3_2:80987240-80987259 None:intergenic 35.0%
! GATTGATATTTGAGGTTCCA+AGG + chr3_2:80987297-80987316 None:intergenic 35.0%
ACTAATATCACCAGCATTTG+AGG - chr3_2:80987333-80987352 Msa0429530:intron 35.0%
! GGTGCTTCCTGAAATTATTT+TGG - chr3_2:80987395-80987414 Msa0429530:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3_2:80987456-80987475 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr3_2:80987556-80987575 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr3_2:80987560-80987579 None:intergenic 35.0%
AAGGCAACATAACTGAACAT+GGG + chr3_2:80987742-80987761 None:intergenic 35.0%
AAAGGCAACATAACTGAACA+TGG + chr3_2:80987743-80987762 None:intergenic 35.0%
TGTTGCCTTTCTTGAAATCA+AGG - chr3_2:80987753-80987772 Msa0429530:intron 35.0%
GGAATCCTTGATTTCAAGAA+AGG + chr3_2:80987761-80987780 None:intergenic 35.0%
! ACTTCAAATTTGGAGTACCT+GGG + chr3_2:80987816-80987835 None:intergenic 35.0%
! TACTTCAAATTTGGAGTACC+TGG + chr3_2:80987817-80987836 None:intergenic 35.0%
! CTCCAAATTTGAAGTATGAG+TGG - chr3_2:80987821-80987840 Msa0429530:CDS 35.0%
ACCCACTCATACTTCAAATT+TGG + chr3_2:80987826-80987845 None:intergenic 35.0%
! ACATGTACTAGTATCGGATA+CGG + chr3_2:80987856-80987875 None:intergenic 35.0%
! GAGTAGTGTTTAAAATGTGG+CGG + chr3_2:80987988-80988007 None:intergenic 35.0%
AGACAACACCATGAAGAAAA+AGG + chr3_2:80988098-80988117 None:intergenic 35.0%
TCGTGATAAACTAAGAAGCA+TGG - chr3_2:80988117-80988136 Msa0429530:intron 35.0%
! CGTGATAAACTAAGAAGCAT+GGG - chr3_2:80988118-80988137 Msa0429530:intron 35.0%
AGCAAAGGCTTCTCTTAAAT+AGG - chr3_2:80988152-80988171 Msa0429530:intron 35.0%
! GATTATAACATTTGTTGGGG+GGG - chr3_2:80988193-80988212 Msa0429530:intron 35.0%
! ATTATAACATTTGTTGGGGG+GGG - chr3_2:80988194-80988213 Msa0429530:intron 35.0%
GGGGAAACATATATGAACTA+AGG + chr3_2:80988411-80988430 None:intergenic 35.0%
CATATATGTTTCCCCGATAT+TGG - chr3_2:80988416-80988435 Msa0429530:intron 35.0%
TTTGAACCAAACCAATATCG+GGG + chr3_2:80988430-80988449 None:intergenic 35.0%
CTTTGAACCAAACCAATATC+GGG + chr3_2:80988431-80988450 None:intergenic 35.0%
CATCAAAAGAATTATGCGTC+TGG + chr3_2:80988479-80988498 None:intergenic 35.0%
! GCATAATTCTTTTGATGTCG+AGG - chr3_2:80988482-80988501 Msa0429530:intron 35.0%
GCAAGAATATGATAGGGATT+AGG - chr3_2:80988537-80988556 Msa0429530:intron 35.0%
! TAGCGTAAACCTACTACTTT+TGG - chr3_2:80988873-80988892 Msa0429530:intron 35.0%
AAGGAACTCCTAAAAACTCA+GGG + chr3_2:80989002-80989021 None:intergenic 35.0%
CATACATGTTTCCCCAATAT+TGG - chr3_2:80989060-80989079 Msa0429530:intron 35.0%
! ATGTTTCCCCAATATTGGTT+TGG - chr3_2:80989065-80989084 Msa0429530:intron 35.0%
CAGGATACAATGAGTAAGAA+TGG + chr3_2:80989207-80989226 None:intergenic 35.0%
ACTCATTGTATCCTGAATTC+TGG - chr3_2:80989212-80989231 Msa0429530:intron 35.0%
CTCTTTAACTACCAGAATTC+AGG + chr3_2:80989226-80989245 None:intergenic 35.0%
! CCGTTGACAATCATGAATTT+TGG - chr3_2:80989533-80989552 Msa0429530:CDS 35.0%
! TACTTCCTTAGTCTAGTTTG+TGG - chr3_2:80989726-80989745 Msa0429530:five_prime_UTR 35.0%
!!! GAGCTGTTTTAGTATTGTGA+TGG - chr3_2:80989748-80989767 Msa0429530:five_prime_UTR 35.0%
! CATTCGTTGTTACTTGTTTC+TGG - chr3_2:80989776-80989795 Msa0429530:five_prime_UTR 35.0%
!! TCGATCGATTTGTTGTAAGT+TGG - chr3_2:80989852-80989871 Msa0429530:five_prime_UTR 35.0%
AAATGCCAATAGGTTCCTTC+AGG - chr3_2:80984884-80984903 Msa0429530:three_prime_UTR 40.0%
AATGCCAATAGGTTCCTTCA+GGG - chr3_2:80984885-80984904 Msa0429530:three_prime_UTR 40.0%
CTGAAACGTGAATACGTGAA+TGG + chr3_2:80985108-80985127 None:intergenic 40.0%
!! ATTGTTGACTTGAGGAGGAT+CGG + chr3_2:80985189-80985208 None:intergenic 40.0%
!! CTCATATTGTTGACTTGAGG+AGG + chr3_2:80985194-80985213 None:intergenic 40.0%
!! CTGCTCATATTGTTGACTTG+AGG + chr3_2:80985197-80985216 None:intergenic 40.0%
CAAGTCAACAATATGAGCAG+TGG - chr3_2:80985197-80985216 Msa0429530:CDS 40.0%
TGAACATGAGGTTGAACTTG+AGG + chr3_2:80985236-80985255 None:intergenic 40.0%
! GTGTTTGTGTTTGTGTTGGT+GGG + chr3_2:80985272-80985291 None:intergenic 40.0%
AGAGTGAGAATCAGAGTCTT+GGG + chr3_2:80985306-80985325 None:intergenic 40.0%
! TTTAGGATACGGAGCGTAAT+CGG + chr3_2:80985336-80985355 None:intergenic 40.0%
! TTTGGGTCGAGTTTAGGATA+CGG + chr3_2:80985347-80985366 None:intergenic 40.0%
!! GATTCGGTGAAAGATGTTCT+TGG - chr3_2:80985593-80985612 Msa0429530:intron 40.0%
AAGATCTTGCTGGAAACATG+TGG - chr3_2:80985657-80985676 Msa0429530:intron 40.0%
TTACTTTGTATGTGCATGGC+TGG - chr3_2:80985836-80985855 Msa0429530:intron 40.0%
TACTTTGTATGTGCATGGCT+GGG - chr3_2:80985837-80985856 Msa0429530:intron 40.0%
AAGATAGAGGCCAATTAGAG+AGG - chr3_2:80985900-80985919 Msa0429530:intron 40.0%
GCAAACACATCCTCTCTAAT+TGG + chr3_2:80985913-80985932 None:intergenic 40.0%
AGAGGATGTGTTTGCATTTC+TGG - chr3_2:80985918-80985937 Msa0429530:intron 40.0%
! GTTGTATGTGAAGGAAGTGT+TGG - chr3_2:80986000-80986019 Msa0429530:intron 40.0%
AAATAAGCGTAGCAGAGATG+AGG - chr3_2:80986048-80986067 Msa0429530:intron 40.0%
AGGATCATGTGTTCAATGTG+TGG - chr3_2:80986068-80986087 Msa0429530:intron 40.0%
AGATGCTAGAAACTAGGCTT+AGG - chr3_2:80986148-80986167 Msa0429530:intron 40.0%
!! AATGTCTTAAAAAGTGCCCC+GGG - chr3_2:80986603-80986622 Msa0429530:intron 40.0%
!!! AACTTTTGAGACTGTACCAG+AGG - chr3_2:80986848-80986867 Msa0429530:intron 40.0%
AAATACAAGACTCCCATGAC+AGG + chr3_2:80986921-80986940 None:intergenic 40.0%
AACAAAGCGGTAACAAGCAA+AGG + chr3_2:80987043-80987062 None:intergenic 40.0%
AATTTCCGGGACACAAATTG+GGG + chr3_2:80987227-80987246 None:intergenic 40.0%
TTGTGTCCCGGAAATTTAGT+TGG - chr3_2:80987231-80987250 Msa0429530:intron 40.0%
AAAATCACACTCTCTTCCCT+TGG - chr3_2:80987277-80987296 Msa0429530:intron 40.0%
GCTGGTGATATTAGTCGTTA+AGG + chr3_2:80987328-80987347 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_2:80987695-80987714 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr3_2:80987557-80987576 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3_2:80987695-80987714 Msa0429530:intron 40.0%
CATGCAAGACTACCGTAAAA+GGG + chr3_2:80987782-80987801 None:intergenic 40.0%
ACATGCAAGACTACCGTAAA+AGG + chr3_2:80987783-80987802 None:intergenic 40.0%
TGGTAGAGAAAGACTGTACA+AGG + chr3_2:80988053-80988072 None:intergenic 40.0%
! TTATAACATTTGTTGGGGGG+GGG - chr3_2:80988195-80988214 Msa0429530:intron 40.0%
! ATGTTTCCCCGATATTGGTT+TGG - chr3_2:80988421-80988440 Msa0429530:intron 40.0%
TAGGGAAATGCTAAAGAGTG+CGG - chr3_2:80988755-80988774 Msa0429530:intron 40.0%
CAGCCTAGTTACATCAACAA+AGG + chr3_2:80988965-80988984 None:intergenic 40.0%
CAAGGAACTCCTAAAAACTC+AGG + chr3_2:80989003-80989022 None:intergenic 40.0%
GAATTTGAGAGAGAGATGCA+AGG + chr3_2:80989021-80989040 None:intergenic 40.0%
GGGGAAACATGTATGAACTA+AGG + chr3_2:80989055-80989074 None:intergenic 40.0%
! ATGTTGAGGGTATAAAGGAG+TGG - chr3_2:80989140-80989159 Msa0429530:CDS 40.0%
AAAGGAGTGGAAGCTAACTA+AGG - chr3_2:80989153-80989172 Msa0429530:CDS 40.0%
GACTACACTTATATGGTGTG+TGG - chr3_2:80989320-80989339 Msa0429530:CDS 40.0%
CACGTAGTATACCAAACATG+AGG - chr3_2:80989644-80989663 Msa0429530:five_prime_UTR 40.0%
ATCAACACAGACCTCATGTT+TGG + chr3_2:80989658-80989677 None:intergenic 40.0%
CTAACCCTGAAGGAACCTAT+TGG + chr3_2:80984892-80984911 None:intergenic 45.0%
ATAGGTTCCTTCAGGGTTAG+AGG - chr3_2:80984892-80984911 Msa0429530:three_prime_UTR 45.0%
TTCCTTCAGGGTTAGAGGTT+AGG - chr3_2:80984897-80984916 Msa0429530:three_prime_UTR 45.0%
AACCTAACCTCTAACCCTGA+AGG + chr3_2:80984902-80984921 None:intergenic 45.0%
TCAGGGTTAGAGGTTAGGTT+AGG - chr3_2:80984902-80984921 Msa0429530:three_prime_UTR 45.0%
GTCAACAATATGAGCAGTGG+TGG - chr3_2:80985200-80985219 Msa0429530:CDS 45.0%
ACATGAGGTTGAACTTGAGG+AGG + chr3_2:80985233-80985252 None:intergenic 45.0%
! TTGTGTTTGTGTTGGTGGGT+TGG + chr3_2:80985268-80985287 None:intergenic 45.0%
GGTGTTTGTGTTTGTGTTGG+TGG + chr3_2:80985273-80985292 None:intergenic 45.0%
GAATCAGAGTCTTGGGGTTT+GGG + chr3_2:80985299-80985318 None:intergenic 45.0%
AGAATCAGAGTCTTGGGGTT+TGG + chr3_2:80985300-80985319 None:intergenic 45.0%
GAGTGAGAATCAGAGTCTTG+GGG + chr3_2:80985305-80985324 None:intergenic 45.0%
GAGAGTGAGAATCAGAGTCT+TGG + chr3_2:80985307-80985326 None:intergenic 45.0%
TTAGGATACGGAGCGTAATC+GGG + chr3_2:80985335-80985354 None:intergenic 45.0%
ACATAGGGATTAGATTCGGC+GGG + chr3_2:80985437-80985456 None:intergenic 45.0%
GACATAGGGATTAGATTCGG+CGG + chr3_2:80985438-80985457 None:intergenic 45.0%
! ACTCTTAGCAGAAGTGGGTT+CGG + chr3_2:80985477-80985496 None:intergenic 45.0%
AGCAAGATCTTCAGCCTTCT+TGG + chr3_2:80985648-80985667 None:intergenic 45.0%
AAGAAGGCTGAAGATCTTGC+TGG - chr3_2:80985647-80985666 Msa0429530:intron 45.0%
ACTTTGTATGTGCATGGCTG+GGG - chr3_2:80985838-80985857 Msa0429530:intron 45.0%
ACCTGCGATGTTGTATGTGA+AGG - chr3_2:80985991-80986010 Msa0429530:intron 45.0%
TCCTTCACATACAACATCGC+AGG + chr3_2:80985995-80986014 None:intergenic 45.0%
GAAACTAGGCTTAGGTGCTT+TGG - chr3_2:80986156-80986175 Msa0429530:intron 45.0%
GCATTCAAAACGCTAGAGAG+AGG - chr3_2:80986242-80986261 Msa0429530:intron 45.0%
ATTAAGTGGGGTAGGCTACA+TGG + chr3_2:80986373-80986392 None:intergenic 45.0%
TGTAGCCTACCCCACTTAAT+TGG - chr3_2:80986373-80986392 Msa0429530:intron 45.0%
!! AAATCCTTAAAGAGTGCCCC+GGG + chr3_2:80986494-80986513 None:intergenic 45.0%
!! GAAATCCTTAAAGAGTGCCC+CGG + chr3_2:80986495-80986514 None:intergenic 45.0%
!! ATGTCTTAAAAAGTGCCCCG+GGG - chr3_2:80986604-80986623 Msa0429530:intron 45.0%
ACAGCAGCATCAGCAAAACT+AGG + chr3_2:80986765-80986784 None:intergenic 45.0%
!! TAGTTTTGCTGATGCTGCTG+TGG - chr3_2:80986764-80986783 Msa0429530:intron 45.0%
! AGTTTTGCTGATGCTGCTGT+GGG - chr3_2:80986765-80986784 Msa0429530:intron 45.0%
TGCTCAGGGAACAAAAGTTC+TGG - chr3_2:80986794-80986813 Msa0429530:intron 45.0%
! GGAACAAAAGTTCTGGCAGA+AGG - chr3_2:80986801-80986820 Msa0429530:intron 45.0%
! ACAAAAGTTCTGGCAGAAGG+TGG - chr3_2:80986804-80986823 Msa0429530:intron 45.0%
AACCCACTTTCTTACCAGAC+TGG - chr3_2:80986972-80986991 Msa0429530:intron 45.0%
CACCAGTCTGGTAAGAAAGT+GGG + chr3_2:80986977-80986996 None:intergenic 45.0%
TCACCAGTCTGGTAAGAAAG+TGG + chr3_2:80986978-80986997 None:intergenic 45.0%
TAAACCCCCAATTTGTGTCC+CGG - chr3_2:80987219-80987238 Msa0429530:intron 45.0%
ATTTCCGGGACACAAATTGG+GGG + chr3_2:80987226-80987245 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_2:80987694-80987713 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3_2:80987694-80987713 Msa0429530:intron 45.0%
!! ACGGAGGGAGTATCATTGTT+TGG - chr3_2:80987710-80987729 Msa0429530:intron 45.0%
TGCATGTTACCTATGAACCC+AGG - chr3_2:80987796-80987815 Msa0429530:CDS 45.0%
! TTTGGAGTACCTGGGTTCAT+AGG + chr3_2:80987808-80987827 None:intergenic 45.0%
TGGGCAACTGAATAGAGCAA+AGG - chr3_2:80988137-80988156 Msa0429530:intron 45.0%
TAACAAGTGCCCTAAGGGTT+GGG + chr3_2:80988310-80988329 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + chr3_2:80988315-80988334 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + chr3_2:80988316-80988335 None:intergenic 45.0%
ATTCTTGCAAGATGTGTGCG+AGG - chr3_2:80988514-80988533 Msa0429530:intron 45.0%
TTCTTGCAAGATGTGTGCGA+GGG - chr3_2:80988515-80988534 Msa0429530:intron 45.0%
TGCGAGGGCAAGAATATGAT+AGG - chr3_2:80988530-80988549 Msa0429530:intron 45.0%
GCGAGGGCAAGAATATGATA+GGG - chr3_2:80988531-80988550 Msa0429530:intron 45.0%
TAACAAGTGCCCTAAGGGTT+GGG + chr3_2:80988310-80988329 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + chr3_2:80988315-80988334 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + chr3_2:80988316-80988335 None:intergenic 45.0%
! AGCTCAAGCCCTGAGTTTTT+AGG - chr3_2:80988381-80988400 Msa0429530:intron 45.0%
GAGTGGAAGCTAACTAAGGT+GGG - chr3_2:80989157-80989176 Msa0429530:CDS 45.0%
CAGCTCCACAAACTAGACTA+AGG + chr3_2:80989734-80989753 None:intergenic 45.0%
!!! CTTTTTTTTATTTTAAATTA+AGG + chr3_2:80984932-80984951 None:intergenic 5.0%
!! CTATAAAATTAATTAAAATA+GGG + chr3_2:80986646-80986665 None:intergenic 5.0%
!!! ATATTTTTATAAATATTGAT+TGG - chr3_2:80988597-80988616 Msa0429530:intron 5.0%
TGGACTTGGGCTTGAACATG+AGG + chr3_2:80985248-80985267 None:intergenic 50.0%
!! TGTGTTGGTGGGTTGGACTT+GGG + chr3_2:80985261-80985280 None:intergenic 50.0%
!! TTGTGTTGGTGGGTTGGACT+TGG + chr3_2:80985262-80985281 None:intergenic 50.0%
! AGAGTCTTGGGGTTTGGGAT+TGG + chr3_2:80985294-80985313 None:intergenic 50.0%
TAGGATACGGAGCGTAATCG+GGG + chr3_2:80985334-80985353 None:intergenic 50.0%
ACGTCGTTTGGGTCGAGTTT+AGG + chr3_2:80985353-80985372 None:intergenic 50.0%
GATTCAGTAGCAACAGGTGG+TGG + chr3_2:80985386-80985405 None:intergenic 50.0%
CGAGATTCAGTAGCAACAGG+TGG + chr3_2:80985389-80985408 None:intergenic 50.0%
ACTGGTGCAGGAGAGACATA+GGG + chr3_2:80985452-80985471 None:intergenic 50.0%
AACTGGTGCAGGAGAGACAT+AGG + chr3_2:80985453-80985472 None:intergenic 50.0%
! CTCTTAGCAGAAGTGGGTTC+GGG + chr3_2:80985476-80985495 None:intergenic 50.0%
AGCTGCTGAAGCTACCAAGA+AGG - chr3_2:80985631-80985650 Msa0429530:intron 50.0%
ACTAGGCTTAGGTGCTTTGG+AGG - chr3_2:80986159-80986178 Msa0429530:intron 50.0%
! GTCTTGTTAACGAGTACCCC+CGG - chr3_2:80986473-80986492 Msa0429530:intron 50.0%
TCTTGTTAACGAGTACCCCC+GGG - chr3_2:80986474-80986493 Msa0429530:intron 50.0%
!! AATCCTTAAAGAGTGCCCCG+GGG + chr3_2:80986493-80986512 None:intergenic 50.0%
!! TGTCTTAAAAAGTGCCCCGG+GGG - chr3_2:80986605-80986624 Msa0429530:intron 50.0%
TGCTGTGGGAAGAATTGCTC+AGG - chr3_2:80986779-80986798 Msa0429530:intron 50.0%
GCTGTGGGAAGAATTGCTCA+GGG - chr3_2:80986780-80986799 Msa0429530:intron 50.0%
ATTGAGTCTGGTCACCAGTC+TGG + chr3_2:80986989-80987008 None:intergenic 50.0%
AGACTGGTGACCAGACTCAA+TGG - chr3_2:80986988-80987007 Msa0429530:intron 50.0%
!! AGACTGTACAAGGAGCACTG+AGG + chr3_2:80988043-80988062 None:intergenic 50.0%
AACAAGTGCCCTAAGGGTTG+GGG + chr3_2:80988309-80988328 None:intergenic 50.0%
CTAACAAGTGCCCTAAGGGT+TGG + chr3_2:80988311-80988330 None:intergenic 50.0%
! TGCTAAAGAGTGCGGAGCAT+TGG - chr3_2:80988763-80988782 Msa0429530:intron 50.0%
CTAACAAGTGCCCTAAGGGT+TGG + chr3_2:80988311-80988330 None:intergenic 50.0%
GGAGTGGAAGCTAACTAAGG+TGG - chr3_2:80989156-80989175 Msa0429530:CDS 50.0%
!! GGTTGGCTTTGCTTGTGGAT+GGG + chr3_2:80989486-80989505 None:intergenic 50.0%
!! AGTAGGGTTGGCTTTGCTTG+TGG + chr3_2:80989491-80989510 None:intergenic 50.0%
GCAGTCTCGCTGATACACTA+TGG - chr3_2:80989609-80989628 Msa0429530:five_prime_UTR 50.0%
AGGATACGGAGCGTAATCGG+GGG + chr3_2:80985333-80985352 None:intergenic 55.0%
! TCAGTAGCAACAGGTGGTGG+TGG + chr3_2:80985383-80985402 None:intergenic 55.0%
GCGCGAGATTCAGTAGCAAC+AGG + chr3_2:80985392-80985411 None:intergenic 55.0%
ATTAGATTCGGCGGGCATGG+TGG + chr3_2:80985429-80985448 None:intergenic 55.0%
!! GGCTTAGGTGCTTTGGAGGT+TGG - chr3_2:80986163-80986182 Msa0429530:intron 55.0%
CTTGTTAACGAGTACCCCCG+GGG - chr3_2:80986475-80986494 Msa0429530:intron 55.0%
!! ATCCTTAAAGAGTGCCCCGG+GGG + chr3_2:80986492-80986511 None:intergenic 55.0%
AAATGTTAACCGGTGCCCCC+GGG + chr3_2:80986623-80986642 None:intergenic 55.0%
GAAATGTTAACCGGTGCCCC+CGG + chr3_2:80986624-80986643 None:intergenic 55.0%
ACCTCTGCTGGACCTGTCAT+GGG - chr3_2:80986906-80986925 Msa0429530:intron 55.0%
! GGGGCTTAGGGCACTTGTTA+AGG + chr3_2:80988289-80988308 None:intergenic 55.0%
ACAAGTGCCCTAAGGGTTGG+GGG + chr3_2:80988308-80988327 None:intergenic 55.0%
ACTGCTCGCAGCTGATGCAA+TGG + chr3_2:80989460-80989479 None:intergenic 55.0%
!! GGGTTGGCTTTGCTTGTGGA+TGG + chr3_2:80989487-80989506 None:intergenic 55.0%
! GTGGTGGTGCGACGTCGTTT+GGG + chr3_2:80985364-80985383 None:intergenic 60.0%
!! GTAGCAACAGGTGGTGGTGG+TGG + chr3_2:80985380-80985399 None:intergenic 60.0%
GGGATTAGATTCGGCGGGCA+TGG + chr3_2:80985432-80985451 None:intergenic 60.0%
! GCAGAAGTGGGTTCGGGAAC+TGG + chr3_2:80985470-80985489 None:intergenic 60.0%
! TACCCCCGGGGCACTCTTTA+AGG - chr3_2:80986487-80986506 Msa0429530:intron 60.0%
AATGTTAACCGGTGCCCCCG+GGG + chr3_2:80986622-80986641 None:intergenic 60.0%
TGCTACCTCTCCACCTCTGC+TGG - chr3_2:80986894-80986913 Msa0429530:intron 60.0%
CATGACAGGTCCAGCAGAGG+TGG + chr3_2:80986907-80986926 None:intergenic 60.0%
CACCTCTGCTGGACCTGTCA+TGG - chr3_2:80986905-80986924 Msa0429530:intron 60.0%
TCCCATGACAGGTCCAGCAG+AGG + chr3_2:80986910-80986929 None:intergenic 60.0%
CCCTAAGGGTTGGGGGCTTA+GGG + chr3_2:80988301-80988320 None:intergenic 60.0%
CCCTAAGCCCCCAACCCTTA+GGG - chr3_2:80988298-80988317 Msa0429530:intron 60.0%
! TGGGCGTAGGGCGCTTGTTA+AGG + chr3_2:80988902-80988921 None:intergenic 60.0%
TGCCCTAAGGGTTGGGCGTA+GGG + chr3_2:80988914-80988933 None:intergenic 60.0%
! GGTGGTGGTGCGACGTCGTT+TGG + chr3_2:80985365-80985384 None:intergenic 65.0%
!! CATGGTGGTGGCAGCATCGG+TGG + chr3_2:80985414-80985433 None:intergenic 65.0%
!! GGGCATGGTGGTGGCAGCAT+CGG + chr3_2:80985417-80985436 None:intergenic 65.0%
AGATTCGGCGGGCATGGTGG+TGG + chr3_2:80985426-80985445 None:intergenic 65.0%
GTGGGTTCGGGAACTGGTGC+AGG + chr3_2:80985464-80985483 None:intergenic 65.0%
!! AAAAAGTGCCCCGGGGGCAC+CGG - chr3_2:80986611-80986630 Msa0429530:intron 65.0%
CAGGTCCAGCAGAGGTGGAG+AGG + chr3_2:80986902-80986921 None:intergenic 65.0%
GCCCTAAGCCCCCAACCCTT+AGG - chr3_2:80988297-80988316 Msa0429530:intron 65.0%
GCCCTAAGGGTTGGGGGCTT+AGG + chr3_2:80988302-80988321 None:intergenic 65.0%
CGCCCTACGCCCAACCCTTA+GGG - chr3_2:80988909-80988928 Msa0429530:intron 65.0%
GTGCCCTAAGGGTTGGGCGT+AGG + chr3_2:80988915-80988934 None:intergenic 65.0%
GCGCCCTACGCCCAACCCTT+AGG - chr3_2:80988908-80988927 Msa0429530:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 80984864 80989927 80984864 ID=Msa0429530;Name=Msa0429530
chr3_2 mRNA 80984864 80989927 80984864 ID=Msa0429530-mRNA-1;Parent=Msa0429530;Name=Msa0429530-mRNA-1;_AED=0.02;_eAED=0.02;_QI=345|1|1|1|1|1|4|306|277
chr3_2 exon 80984864 80985343 80984864 ID=Msa0429530-mRNA-1:exon:22305;Parent=Msa0429530-mRNA-1
chr3_2 exon 80987769 80988040 80987769 ID=Msa0429530-mRNA-1:exon:22304;Parent=Msa0429530-mRNA-1
chr3_2 exon 80989105 80989206 80989105 ID=Msa0429530-mRNA-1:exon:22303;Parent=Msa0429530-mRNA-1
chr3_2 exon 80989297 80989927 80989297 ID=Msa0429530-mRNA-1:exon:22302;Parent=Msa0429530-mRNA-1
chr3_2 five_prime_UTR 80989583 80989927 80989583 ID=Msa0429530-mRNA-1:five_prime_utr;Parent=Msa0429530-mRNA-1
chr3_2 CDS 80989297 80989582 80989297 ID=Msa0429530-mRNA-1:cds;Parent=Msa0429530-mRNA-1
chr3_2 CDS 80989105 80989206 80989105 ID=Msa0429530-mRNA-1:cds;Parent=Msa0429530-mRNA-1
chr3_2 CDS 80987769 80988040 80987769 ID=Msa0429530-mRNA-1:cds;Parent=Msa0429530-mRNA-1
chr3_2 CDS 80985170 80985343 80985170 ID=Msa0429530-mRNA-1:cds;Parent=Msa0429530-mRNA-1
chr3_2 three_prime_UTR 80984864 80985169 80984864 ID=Msa0429530-mRNA-1:three_prime_utr;Parent=Msa0429530-mRNA-1
Gene Sequence

>Msa0429530

ATGAGCAGTGGTGGTGATCAACCTCCTCAAGTTCAACCTCATGTTCAAGCCCAAGTCCAACCCACCAACACAAACACAAACACCAATCCCAAACCCCAAGACTCTGATTCTCACTCTCACACCCCCGATTACGCTCCGTATCCTAAACTCGACCCAAACGACGTCGCACCACCACCACCACCTGTTGCTACTGAATCTCGCGCCACCGATGCTGCCACCACCATGCCCGCCGAATCTAATCCCTATGTCTCTCCTGCACCAGTTCCCGAACCCACTTCTGCTAAGAATACTTTAGATTCGGTGAAAGATGTTCTTGGAAAATGGGGTAAGAAAGCTGCTGAAGCTACCAAGAAGGCTGAAGATCTTGCTGGAAACATGTGGCAACACTTGAAAACAGGTCCTAGTTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGAACAAAAGTTCTGGCAGAAGGTGGCTACGAGAAGATCTTTAGACAAACTTTTGAGACTGTACCAGAGGAACAACTTCTTAAAACATATGCATGCTACCTCTCCACCTCTGCTGGACCTGTCATGGGAGTCTTGTATTTGTCAACTGCTAAGCTCGCATTCTGTAGCGACAACCCACTTTCTTACCAGACTGGTGACCAGACTCAATGGAGCTATTATAAGGTGGTCATTCCATTGCATCAGCTGCGAGCAGTGAACCCATCCACAAGCAAAGCCAACCCTACTGAAAAATTTATACAGATTATCTCCGTTGACAATCATGAATTTTGGTTTATGGGCTTTGTGTACTACGACAGCGCTGTTAAACATATTCAAGAAGCATTGCAGTCTCGCTGA
Protein sequence

>Msa0429530

MSSGGDQPPQVQPHVQAQVQPTNTNTNTNPKPQDSDSHSHTPDYAPYPKLDPNDVAPPPPPVATESRATDAATTMPAESNPYVSPAPVPEPTSAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGDQTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQEALQSR*