AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406550 MtrunA17_Chr4g0073551 94.667 150 6 1 1 150 1 148 3.19e-87 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406550 AT2G24090.1 55.844 154 52 3 2 150 3 145 6.58e-44 142

Find 48 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATCAGCAAAGCGATTT+AGG 0.147866 tig0023210:-82053 Msa1406550:CDS
CAAGATTGAACAAACCATTT+TGG 0.208259 tig0023210:+81942 None:intergenic
TTTCACGAGTCACTGATATT+TGG 0.257574 tig0023210:+79924 None:intergenic
AGTGACTATGACAATGTAAT+TGG 0.287106 tig0023210:-80114 Msa1406550:CDS
ATTTAGCATGGTCCTGTCTA+AGG 0.305154 tig0023210:-80023 Msa1406550:three_prime_UTR
GGCATCAGCAAAGCGATTTA+GGG 0.327417 tig0023210:-82052 Msa1406550:CDS
CGATTTAGGGTTACCGGTGC+TGG 0.339311 tig0023210:-82039 Msa1406550:CDS
TAGTAACCATGGAATGGTTT+TGG 0.345248 tig0023210:+82213 None:intergenic
GAAATTGAGACTCTCCAAAA+TGG 0.345784 tig0023210:-81956 Msa1406550:intron
CAAATGGTGTAAAAGCATAT+TGG 0.367232 tig0023210:+79987 None:intergenic
AGACATATGTAATGCTAAAC+AGG 0.381633 tig0023210:+79827 None:intergenic
GCAAAGCGATTTAGGGTTAC+CGG 0.390331 tig0023210:-82045 Msa1406550:CDS
GTAAATGTGAATAGTAGAAA+TGG 0.410222 tig0023210:+79856 None:intergenic
TCAATTCCCTCAAACTCAAT+TGG 0.415519 tig0023210:-82265 Msa1406550:CDS
AAAATCGTGCGTCGGAGAGC+AGG 0.438969 tig0023210:-82015 Msa1406550:CDS
GAATTGACATTGTTTGAGAA+AGG 0.445692 tig0023210:+82281 None:intergenic
CCATGTTAAGAGTGTGTTTG+TGG 0.447071 tig0023210:+82408 None:intergenic
TACTAGACCAATTGAGTTTG+AGG 0.451953 tig0023210:+82258 None:intergenic
ACTAGACCAATTGAGTTTGA+GGG 0.466679 tig0023210:+82259 None:intergenic
CTCACTATCGTATCCGCTAA+AGG 0.476723 tig0023210:-82176 Msa1406550:CDS
AAAATAAAACAACTTTCAAA+TGG 0.481515 tig0023210:+79971 None:intergenic
TTTCTGTTTACTTTCAGATA+CGG 0.499482 tig0023210:+80084 None:intergenic
TTAATTGCGTTTCAATCAAG+TGG 0.506120 tig0023210:+82525 None:intergenic
AGGATAGGATAGAACCTTGT+GGG 0.517887 tig0023210:+82139 None:intergenic
GTAAGATTTCTACGCGGTTG+TGG 0.520009 tig0023210:+82484 None:intergenic
ACACACTCTTAACATGGCGT+TGG 0.535399 tig0023210:-82402 Msa1406550:exon
TCTTAACCAAAACCATTCCA+TGG 0.537305 tig0023210:-82219 Msa1406550:CDS
TGTAATGCTAAACAGGAAGA+TGG 0.539942 tig0023210:+79834 None:intergenic
TTTCAATTTGTAGCCTTTAG+CGG 0.541342 tig0023210:+82163 None:intergenic
GACTTCACAAATCCTTAGAC+AGG 0.543426 tig0023210:+80011 None:intergenic
CATGGCGTTGGCTTCTGCAA+CGG 0.545322 tig0023210:-82390 Msa1406550:CDS
AATTGTTATTACATAATACA+AGG 0.547514 tig0023210:+79894 None:intergenic
GCGAGGAGAAGTAGTAACCA+TGG 0.549868 tig0023210:+82202 None:intergenic
GTTCTTGTAAATTGTGTGTG+AGG 0.563309 tig0023210:+82430 None:intergenic
TTAGCATTACATATGTCTTG+TGG 0.568915 tig0023210:-79822 Msa1406550:three_prime_UTR
CGAGTAGAGGAAGAAGAAGA+TGG 0.569694 tig0023210:+82329 None:intergenic
CCACAAACACACTCTTAACA+TGG 0.593623 tig0023210:-82408 Msa1406550:exon
TCTGAATTATGAATTTAGCA+TGG 0.600627 tig0023210:-80035 Msa1406550:three_prime_UTR
GAGAAGTAGTAACCATGGAA+TGG 0.608033 tig0023210:+82207 None:intergenic
AAGTCTCAAGGCGGCAAAGG+AGG 0.608560 tig0023210:+82358 None:intergenic
TGAAAGTCTCAAGGCGGCAA+AGG 0.614182 tig0023210:+82355 None:intergenic
GTAGAGGAAGAAGAAGATGG+TGG 0.614461 tig0023210:+82332 None:intergenic
AGATGGTGGTGAAAGTCTCA+AGG 0.634963 tig0023210:+82346 None:intergenic
ACTGAAAGAGACACGAGTAG+AGG 0.649199 tig0023210:+82316 None:intergenic
GATACGATAGTGAGAGAGCG+AGG 0.653895 tig0023210:+82185 None:intergenic
CTACAAATTGAAAACCCACA+AGG 0.682218 tig0023210:-82153 Msa1406550:intron
TGGTGGTGAAAGTCTCAAGG+CGG 0.774344 tig0023210:+82349 None:intergenic
GATTGAGTAAGATTTCTACG+CGG 0.814577 tig0023210:+82478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTTGTGAATT+AGG - tig0023210:81502-81521 Msa1406550:intron 10.0%
!!! TTAATTGAATTTCATTTTTC+AGG - tig0023210:80190-80209 Msa1406550:intron 15.0%
!! AAAATAAAACAACTTTCAAA+TGG + tig0023210:82295-82314 None:intergenic 15.0%
!!! TTTATTTTACAAATGAATTG+AGG - tig0023210:82307-82326 Msa1406550:CDS 15.0%
!!! AATTGTTATTACATAATACA+AGG + tig0023210:82372-82391 None:intergenic 15.0%
!!! TAAATCAATTTTTTTCCTTA+TGG - tig0023210:82464-82483 Msa1406550:five_prime_UTR 15.0%
!! TTATTATCATCATTCTTCTT+TGG - tig0023210:80370-80389 Msa1406550:intron 20.0%
!!! TTTGGTATTTGTTTACTTTT+TGG - tig0023210:80430-80449 Msa1406550:intron 20.0%
!!! TGATTGATAATTCATAAGAT+AGG + tig0023210:81037-81056 None:intergenic 20.0%
!! GATATTGTTAATTAGTAAGT+TGG - tig0023210:81178-81197 Msa1406550:intron 20.0%
!!! TCATGTTATTTGTTAATAAG+AGG - tig0023210:81217-81236 Msa1406550:intron 20.0%
!!! CATGTTATTTGTTAATAAGA+GGG - tig0023210:81218-81237 Msa1406550:intron 20.0%
!!! ATGTTATTTGTTAATAAGAG+GGG - tig0023210:81219-81238 Msa1406550:intron 20.0%
!! TTAAATTAGCTATGAAATCA+TGG - tig0023210:81415-81434 Msa1406550:intron 20.0%
!! TAAATTAGCTATGAAATCAT+GGG - tig0023210:81416-81435 Msa1406550:intron 20.0%
!! ACGAACAATTAAGTTAATTA+TGG - tig0023210:82067-82086 Msa1406550:intron 20.0%
! TACATAGTTAAACTTGAAGT+GGG + tig0023210:80158-80177 None:intergenic 25.0%
! ATACATAGTTAAACTTGAAG+TGG + tig0023210:80159-80178 None:intergenic 25.0%
!! AAGTTTTACTACATGAAAGT+GGG - tig0023210:80654-80673 Msa1406550:intron 25.0%
!! GACATTGTAGATATTTTGTT+TGG + tig0023210:80850-80869 None:intergenic 25.0%
! AGTGATAAAAACTTGGTATT+TGG + tig0023210:81150-81169 None:intergenic 25.0%
! TCTATTGAGTGATAAAAACT+TGG + tig0023210:81157-81176 None:intergenic 25.0%
!! AAGTTTTTATCACTCAATAG+AGG - tig0023210:81156-81175 Msa1406550:intron 25.0%
!! AAAATTTGAAAAGTGCAACT+TGG + tig0023210:81577-81596 None:intergenic 25.0%
! ATCTCAGCAATAAATATTTG+CGG + tig0023210:81646-81665 None:intergenic 25.0%
! TGATAAATTACAACCTTCTA+TGG - tig0023210:81688-81707 Msa1406550:intron 25.0%
! GAATGATATTTGATATACTG+TGG - tig0023210:81936-81955 Msa1406550:intron 25.0%
!!! ATTTTTACCGAACTTTTTCT+TGG - tig0023210:82015-82034 Msa1406550:CDS 25.0%
!!! TTTTTACCGAACTTTTTCTT+GGG - tig0023210:82016-82035 Msa1406550:CDS 25.0%
! AAAATTCCCAAGAAAAAGTT+CGG + tig0023210:82025-82044 None:intergenic 25.0%
! TTTCTGTTTACTTTCAGATA+CGG + tig0023210:82182-82201 None:intergenic 25.0%
! TCTGAATTATGAATTTAGCA+TGG - tig0023210:82228-82247 Msa1406550:CDS 25.0%
! GTAAATGTGAATAGTAGAAA+TGG + tig0023210:82410-82429 None:intergenic 25.0%
! TTTACAACAAAAAGTCCATA+AGG + tig0023210:82482-82501 None:intergenic 25.0%
!!! ACTTTTTGTTGTAAATCATG+TGG - tig0023210:82487-82506 Msa1406550:five_prime_UTR 25.0%
TTAATTGCGTTTCAATCAAG+TGG + tig0023210:79741-79760 None:intergenic 30.0%
GAATTGACATTGTTTGAGAA+AGG + tig0023210:79985-80004 None:intergenic 30.0%
!!! GAATGGTTTTGGTTAAGAAT+TGG + tig0023210:80042-80061 None:intergenic 30.0%
TTTCAATTTGTAGCCTTTAG+CGG + tig0023210:80103-80122 None:intergenic 30.0%
TGCTCTACAAAAAGAATAAG+AGG - tig0023210:80282-80301 Msa1406550:intron 30.0%
TCTACAAAAAGAATAAGAGG+AGG - tig0023210:80285-80304 Msa1406550:intron 30.0%
! CAAGATTGAACAAACCATTT+TGG + tig0023210:80324-80343 None:intergenic 30.0%
TCATTGCTTACAACTGTATT+TGG - tig0023210:80412-80431 Msa1406550:intron 30.0%
! GAAGTTTTACTACATGAAAG+TGG - tig0023210:80653-80672 Msa1406550:intron 30.0%
ACACATGAAAAATAGAGAGA+AGG + tig0023210:80786-80805 None:intergenic 30.0%
ATATATCATGTAGCTCAAGT+AGG - tig0023210:80883-80902 Msa1406550:intron 30.0%
TCCTATATGAACATGGAAAT+CGG + tig0023210:80925-80944 None:intergenic 30.0%
TGATGTCAAAACGGTTTAAA+GGG + tig0023210:80953-80972 None:intergenic 30.0%
GATAATTCATAAGATAGGCA+AGG + tig0023210:81032-81051 None:intergenic 30.0%
TGAGAGAGAGAAAAAGATTA+AGG + tig0023210:81087-81106 None:intergenic 30.0%
! AATTAGTAAGTTGGCTAACT+AGG - tig0023210:81187-81206 Msa1406550:intron 30.0%
! TGCTGATTGTTTGTATTCAA+GGG - tig0023210:81320-81339 Msa1406550:intron 30.0%
! AGGCATTTTGTTAAGATTTG+TGG + tig0023210:81541-81560 None:intergenic 30.0%
ATCTTAACAAAATGCCTTGA+TGG - tig0023210:81544-81563 Msa1406550:intron 30.0%
TCTTAACAAAATGCCTTGAT+GGG - tig0023210:81545-81564 Msa1406550:intron 30.0%
GAGGACTAAAATAAAGTCAT+TGG - tig0023210:81718-81737 Msa1406550:intron 30.0%
AGTGACTATGACAATGTAAT+TGG - tig0023210:82149-82168 Msa1406550:intron 30.0%
! CAAATGGTGTAAAAGCATAT+TGG + tig0023210:82279-82298 None:intergenic 30.0%
AGACATATGTAATGCTAAAC+AGG + tig0023210:82439-82458 None:intergenic 30.0%
TTAGCATTACATATGTCTTG+TGG - tig0023210:82441-82460 Msa1406550:five_prime_UTR 30.0%
GATTGAGTAAGATTTCTACG+CGG + tig0023210:79788-79807 None:intergenic 35.0%
GTTCTTGTAAATTGTGTGTG+AGG + tig0023210:79836-79855 None:intergenic 35.0%
TCAATTCCCTCAAACTCAAT+TGG - tig0023210:79998-80017 Msa1406550:three_prime_UTR 35.0%
ACTAGACCAATTGAGTTTGA+GGG + tig0023210:80007-80026 None:intergenic 35.0%
TACTAGACCAATTGAGTTTG+AGG + tig0023210:80008-80027 None:intergenic 35.0%
!!! GTTTTGGTTAAGAATTGGAG+CGG + tig0023210:80037-80056 None:intergenic 35.0%
TCTTAACCAAAACCATTCCA+TGG - tig0023210:80044-80063 Msa1406550:three_prime_UTR 35.0%
! TAGTAACCATGGAATGGTTT+TGG + tig0023210:80053-80072 None:intergenic 35.0%
CTACAAATTGAAAACCCACA+AGG - tig0023210:80110-80129 Msa1406550:CDS 35.0%
GAAATTGAGACTCTCCAAAA+TGG - tig0023210:80307-80326 Msa1406550:intron 35.0%
! TAGCTTGTATCTAACTCCTA+AGG + tig0023210:80527-80546 None:intergenic 35.0%
TTAGGAGTTAGATACAAGCT+AGG - tig0023210:80526-80545 Msa1406550:intron 35.0%
TAGGAGTTAGATACAAGCTA+GGG - tig0023210:80527-80546 Msa1406550:intron 35.0%
! TTTTGTGCAATTGTTATGCG+CGG - tig0023210:80573-80592 Msa1406550:intron 35.0%
!! AAAGTGGGTGACTTTTTCTT+GGG - tig0023210:80669-80688 Msa1406550:intron 35.0%
GTTGTGAGATTACTAGAAGA+GGG - tig0023210:80697-80716 Msa1406550:intron 35.0%
!! TTTTAGGAAATGGGAATGGA+TGG - tig0023210:80724-80743 Msa1406550:intron 35.0%
TGAAAAATAGAGAGAAGGCA+GGG + tig0023210:80781-80800 None:intergenic 35.0%
ATGAAAAATAGAGAGAAGGC+AGG + tig0023210:80782-80801 None:intergenic 35.0%
TCCGATTTCCATGTTCATAT+AGG - tig0023210:80921-80940 Msa1406550:intron 35.0%
GTGATGTCAAAACGGTTTAA+AGG + tig0023210:80954-80973 None:intergenic 35.0%
TCATAAGATAGGCAAGGTAA+AGG + tig0023210:81026-81045 None:intergenic 35.0%
ACTTATCACACAATTGAGTG+TGG - tig0023210:81060-81079 Msa1406550:intron 35.0%
AAACAATCAGCAGAGATTTG+AGG + tig0023210:81312-81331 None:intergenic 35.0%
! CTGCTGATTGTTTGTATTCA+AGG - tig0023210:81319-81338 Msa1406550:intron 35.0%
ATGAAATCATGGGTTTGAAC+TGG - tig0023210:81426-81445 Msa1406550:intron 35.0%
GACAGTAGAACAGAAAATTG+TGG + tig0023210:81624-81643 None:intergenic 35.0%
AACCTTCTATGGAAAATGTG+AGG - tig0023210:81699-81718 Msa1406550:intron 35.0%
TCAATTGAACTGAACTGTAG+TGG - tig0023210:81765-81784 Msa1406550:intron 35.0%
CAGTATAGAATTTCATCACC+TGG - tig0023210:81833-81852 Msa1406550:intron 35.0%
ATAGAATTTCATCACCTGGA+AGG - tig0023210:81837-81856 Msa1406550:intron 35.0%
! AAATCCAAGTGTTGTTAGGA+TGG + tig0023210:81907-81926 None:intergenic 35.0%
! CTAGAAATCCAAGTGTTGTT+AGG + tig0023210:81911-81930 None:intergenic 35.0%
TCAACCAAAATGCCACATTT+CGG + tig0023210:81991-82010 None:intergenic 35.0%
TTTCACGAGTCACTGATATT+TGG + tig0023210:82342-82361 None:intergenic 35.0%
TGTAATGCTAAACAGGAAGA+TGG + tig0023210:82432-82451 None:intergenic 35.0%
! CCATGTTAAGAGTGTGTTTG+TGG + tig0023210:79858-79877 None:intergenic 40.0%
CCACAAACACACTCTTAACA+TGG - tig0023210:79855-79874 Msa1406550:three_prime_UTR 40.0%
GAGAAGTAGTAACCATGGAA+TGG + tig0023210:80059-80078 None:intergenic 40.0%
AGGATAGGATAGAACCTTGT+GGG + tig0023210:80127-80146 None:intergenic 40.0%
! AAGTGGGTTTGAAAGAGGAT+AGG + tig0023210:80142-80161 None:intergenic 40.0%
! ACTTGAAGTGGGTTTGAAAG+AGG + tig0023210:80147-80166 None:intergenic 40.0%
! CTAACTCCTAAGGTACTCTT+GGG + tig0023210:80517-80536 None:intergenic 40.0%
! TCTAACTCCTAAGGTACTCT+TGG + tig0023210:80518-80537 None:intergenic 40.0%
GTTAGATACAAGCTAGGGTA+TGG - tig0023210:80532-80551 Msa1406550:intron 40.0%
!! GAAAGTGGGTGACTTTTTCT+TGG - tig0023210:80668-80687 Msa1406550:intron 40.0%
!! AAGTGGGTGACTTTTTCTTG+GGG - tig0023210:80670-80689 Msa1406550:intron 40.0%
GGTTGTGAGATTACTAGAAG+AGG - tig0023210:80696-80715 Msa1406550:intron 40.0%
!! TGGCTTTTAGGAAATGGGAA+TGG - tig0023210:80720-80739 Msa1406550:intron 40.0%
ATGGGAATGGATGGAAAAGT+TGG - tig0023210:80733-80752 Msa1406550:intron 40.0%
ATGGATGGAAAAGTTGGACT+TGG - tig0023210:80739-80758 Msa1406550:intron 40.0%
GGCATCATCCTATATGAACA+TGG + tig0023210:80932-80951 None:intergenic 40.0%
CTTGATGCGTGATGTCAAAA+CGG + tig0023210:80962-80981 None:intergenic 40.0%
ACAAGATAGGTCACTCTCTA+AGG + tig0023210:81247-81266 None:intergenic 40.0%
GAGTGACCTATCTTGTCAAA+TGG - tig0023210:81251-81270 Msa1406550:intron 40.0%
GACCTATCTTGTCAAATGGA+AGG - tig0023210:81255-81274 Msa1406550:intron 40.0%
CTCCTTCCATTTGACAAGAT+AGG + tig0023210:81260-81279 None:intergenic 40.0%
TCTTGTCAAATGGAAGGAGT+AGG - tig0023210:81261-81280 Msa1406550:intron 40.0%
CTTGTCAAATGGAAGGAGTA+GGG - tig0023210:81262-81281 Msa1406550:intron 40.0%
TTGTCAAATGGAAGGAGTAG+GGG - tig0023210:81263-81282 Msa1406550:intron 40.0%
GTAGGGGGCTTAATGAATTT+AGG - tig0023210:81279-81298 Msa1406550:intron 40.0%
GGGGCTTAATGAATTTAGGA+GGG - tig0023210:81283-81302 Msa1406550:intron 40.0%
GCTTAATGAATTTAGGAGGG+TGG - tig0023210:81286-81305 Msa1406550:intron 40.0%
AACTTGGAATACACCCATCA+AGG + tig0023210:81561-81580 None:intergenic 40.0%
! GTCCTCACATTTTCCATAGA+AGG + tig0023210:81704-81723 None:intergenic 40.0%
GATGAGATGAAATTCCTTCC+AGG + tig0023210:81854-81873 None:intergenic 40.0%
! AGTGTTGTTAGGATGGATGT+GGG + tig0023210:81900-81919 None:intergenic 40.0%
! AAGTGTTGTTAGGATGGATG+TGG + tig0023210:81901-81920 None:intergenic 40.0%
ACATCCATCCTAACAACACT+TGG - tig0023210:81900-81919 Msa1406550:intron 40.0%
CAACCAAAATGCCACATTTC+GGG + tig0023210:81990-82009 None:intergenic 40.0%
ATTTAGCATGGTCCTGTCTA+AGG - tig0023210:82240-82259 Msa1406550:CDS 40.0%
GACTTCACAAATCCTTAGAC+AGG + tig0023210:82255-82274 None:intergenic 40.0%
GTAAGATTTCTACGCGGTTG+TGG + tig0023210:79782-79801 None:intergenic 45.0%
ACACACTCTTAACATGGCGT+TGG - tig0023210:79861-79880 Msa1406550:three_prime_UTR 45.0%
! AGATGGTGGTGAAAGTCTCA+AGG + tig0023210:79920-79939 None:intergenic 45.0%
GTAGAGGAAGAAGAAGATGG+TGG + tig0023210:79934-79953 None:intergenic 45.0%
CGAGTAGAGGAAGAAGAAGA+TGG + tig0023210:79937-79956 None:intergenic 45.0%
ACTGAAAGAGACACGAGTAG+AGG + tig0023210:79950-79969 None:intergenic 45.0%
CTCACTATCGTATCCGCTAA+AGG - tig0023210:80087-80106 Msa1406550:CDS 45.0%
GAGGATAGGATAGAACCTTG+TGG + tig0023210:80128-80147 None:intergenic 45.0%
AGGCATCAGCAAAGCGATTT+AGG - tig0023210:80210-80229 Msa1406550:intron 45.0%
GGCATCAGCAAAGCGATTTA+GGG - tig0023210:80211-80230 Msa1406550:intron 45.0%
! GCAAAGCGATTTAGGGTTAC+CGG - tig0023210:80218-80237 Msa1406550:intron 45.0%
! AAGGTACTCTTGGGCAAGAA+AGG + tig0023210:80508-80527 None:intergenic 45.0%
!! TTCTTGCCCAAGAGTACCTT+AGG - tig0023210:80508-80527 Msa1406550:intron 45.0%
TACAAGCTAGGGTATGGAAC+TGG - tig0023210:80538-80557 Msa1406550:intron 45.0%
!! GGTGACTTTTTCTTGGGGTT+GGG - tig0023210:80675-80694 Msa1406550:intron 45.0%
GTGAGATTACTAGAAGAGGG+TGG - tig0023210:80700-80719 Msa1406550:intron 45.0%
! ACTAGAAGAGGGTGGCTTTT+AGG - tig0023210:80708-80727 Msa1406550:intron 45.0%
!! AGAGGGTGGCTTTTAGGAAA+TGG - tig0023210:80714-80733 Msa1406550:intron 45.0%
!! GAGGGTGGCTTTTAGGAAAT+GGG - tig0023210:80715-80734 Msa1406550:intron 45.0%
TGTCAAATGGAAGGAGTAGG+GGG - tig0023210:81264-81283 Msa1406550:intron 45.0%
GGGGGCTTAATGAATTTAGG+AGG - tig0023210:81282-81301 Msa1406550:intron 45.0%
TGTTAGGATGGATGTGGGTT+TGG + tig0023210:81895-81914 None:intergenic 45.0%
! TCACCCGAAATGTGGCATTT+TGG - tig0023210:81984-82003 Msa1406550:CDS 45.0%
TGAAAGTCTCAAGGCGGCAA+AGG + tig0023210:79911-79930 None:intergenic 50.0%
! TGGTGGTGAAAGTCTCAAGG+CGG + tig0023210:79917-79936 None:intergenic 50.0%
GCGAGGAGAAGTAGTAACCA+TGG + tig0023210:80064-80083 None:intergenic 50.0%
GATACGATAGTGAGAGAGCG+AGG + tig0023210:80081-80100 None:intergenic 50.0%
! ACGCACGATTTTTCCAGCAC+CGG + tig0023210:80240-80259 None:intergenic 50.0%
GTGCTGGAAAAATCGTGCGT+CGG - tig0023210:80240-80259 Msa1406550:intron 50.0%
!! GGGTGACTTTTTCTTGGGGT+TGG - tig0023210:80674-80693 Msa1406550:intron 50.0%
TGTGGAGAAGCTCAAGTGTC+TGG - tig0023210:81954-81973 Msa1406550:intron 50.0%
AGAAGCTCAAGTGTCTGGCT+TGG - tig0023210:81959-81978 Msa1406550:CDS 50.0%
GCTTGGATTCACCCGAAATG+TGG - tig0023210:81976-81995 Msa1406550:CDS 50.0%
!! CATGGCGTTGGCTTCTGCAA+CGG - tig0023210:79873-79892 Msa1406550:three_prime_UTR 55.0%
AAGTCTCAAGGCGGCAAAGG+AGG + tig0023210:79908-79927 None:intergenic 55.0%
! CGATTTAGGGTTACCGGTGC+TGG - tig0023210:80224-80243 Msa1406550:intron 55.0%
AAAATCGTGCGTCGGAGAGC+AGG - tig0023210:80248-80267 Msa1406550:intron 55.0%
Chromosome Type Strat End Strand Name
tig0023210 gene 79733 82552 79733 ID=Msa1406550;Name=Msa1406550
tig0023210 mRNA 79733 82552 79733 ID=Msa1406550-mRNA-1;Parent=Msa1406550;Name=Msa1406550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=141|1|1|1|1|1|3|341|150
tig0023210 exon 79733 80151 79733 ID=Msa1406550-mRNA-1:exon:24624;Parent=Msa1406550-mRNA-1
tig0023210 exon 81957 82073 81957 ID=Msa1406550-mRNA-1:exon:24623;Parent=Msa1406550-mRNA-1
tig0023210 exon 82154 82552 82154 ID=Msa1406550-mRNA-1:exon:24622;Parent=Msa1406550-mRNA-1
tig0023210 five_prime_UTR 82412 82552 82412 ID=Msa1406550-mRNA-1:five_prime_utr;Parent=Msa1406550-mRNA-1
tig0023210 CDS 82154 82411 82154 ID=Msa1406550-mRNA-1:cds;Parent=Msa1406550-mRNA-1
tig0023210 CDS 81957 82073 81957 ID=Msa1406550-mRNA-1:cds;Parent=Msa1406550-mRNA-1
tig0023210 CDS 80074 80151 80074 ID=Msa1406550-mRNA-1:cds;Parent=Msa1406550-mRNA-1
tig0023210 three_prime_UTR 79733 80073 79733 ID=Msa1406550-mRNA-1:three_prime_utr;Parent=Msa1406550-mRNA-1
Gene Sequence

>Msa1406550

ATGGCGTTGGCTTCTGCAACGGTCACAGTCTCCTCCTTTGCCGCCTTGAGACTTTCACCACCATCTTCTTCTTCCTCTACTCGTGTCTCTTTCAGTTCAGTTAAATCACCTTTCTCAAACAATGTCAATTCCCTCAAACTCAATTGGTCTAGTAGTATTTCCGCTCCAATTCTTAACCAAAACCATTCCATGGTTACTACTTCTCCTCGCTCTCTCACTATCGTATCCGCTAAAGGCTACAAATTGAAAACCCACAAGGCATCAGCAAAGCGATTTAGGGTTACCGGTGCTGGAAAAATCGTGCGTCGGAGAGCAGGAAAGCAACATTTGCTCTACAAAAAGAATAAGAGGAGGAAATTGAGACTCTCCAAAATGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCGTATCTGAAAGTAAACAGAAAAGCTACGTAA

Protein sequence

>Msa1406550

MALASATVTVSSFAALRLSPPSSSSSTRVSFSSVKSPFSNNVNSLKLNWSSSISAPILNQNHSMVTTSPRSLTIVSAKGYKLKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKRRKLRLSKMIQVNRSDYDNVIGALPYLKVNRKAT*