Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356850 | RHN47055.1 | 80.851 | 94 | 18 | 0 | 89 | 182 | 104 | 197 | 2.05e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356850 | A0A396H7A9 | 80.851 | 94 | 18 | 0 | 89 | 182 | 104 | 197 | 9.79e-46 | 158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1356850 | 0.827576 | 1.449434e-54 | -8.615850e-47 |
| Msa1356850 | Msa1372760 | 0.803569 | 3.274955e-49 | -8.615850e-47 |
| Msa1356850 | Msa1378760 | 0.800944 | 1.136272e-48 | -8.615850e-47 |
| Msa1356850 | Msa1402730 | 0.807819 | 4.195424e-50 | -8.615850e-47 |
| Msa1356850 | Msa1438250 | 0.804238 | 2.377202e-49 | -8.615850e-47 |
| Msa1356850 | Msa1464940 | 0.803826 | 2.896737e-49 | -8.615850e-47 |
| Msa0657970 | Msa1356850 | 0.814084 | 1.844193e-51 | -8.615850e-47 |
| Msa0760130 | Msa1356850 | 0.803039 | 4.216997e-49 | -8.615850e-47 |
| Msa0157290 | Msa1356850 | 0.827893 | 1.216396e-54 | -8.615850e-47 |
| Msa0202950 | Msa1356850 | 0.802781 | 4.767814e-49 | -8.615850e-47 |
| Msa0220740 | Msa1356850 | 0.815396 | 9.444660e-52 | -8.615850e-47 |
| Msa1226660 | Msa1356850 | 0.813494 | 2.488321e-51 | -8.615850e-47 |
| Msa1238470 | Msa1356850 | 0.806577 | 7.690243e-50 | -8.615850e-47 |
| Msa1242220 | Msa1356850 | 0.820082 | 8.276228e-53 | -8.615850e-47 |
| Msa1283860 | Msa1356850 | 0.817081 | 3.968176e-52 | -8.615850e-47 |
| Msa1284680 | Msa1356850 | 0.804069 | 2.578002e-49 | -8.615850e-47 |
| Msa1314170 | Msa1356850 | 0.807696 | 4.455125e-50 | -8.615850e-47 |
| Msa1322890 | Msa1356850 | 0.817675 | 2.915454e-52 | -8.615850e-47 |
| Msa0410650 | Msa1356850 | 0.809143 | 2.188481e-50 | -8.615850e-47 |
| Msa1014540 | Msa1356850 | 0.825544 | 4.423333e-54 | -8.615850e-47 |
| Msa1082500 | Msa1356850 | 0.804729 | 1.877918e-49 | -8.615850e-47 |
| Msa1085200 | Msa1356850 | 0.810539 | 1.096408e-50 | -8.615850e-47 |
| Msa0284420 | Msa1356850 | 0.805153 | 1.531927e-49 | -8.615850e-47 |
| Msa0507680 | Msa1356850 | 0.802959 | 4.380079e-49 | -8.615850e-47 |
| Msa0533070 | Msa1356850 | 0.800954 | 1.131001e-48 | -8.615850e-47 |
| Msa0599890 | Msa1356850 | 0.801097 | 1.057436e-48 | -8.615850e-47 |
| Msa0880140 | Msa1356850 | 0.823824 | 1.125048e-53 | -8.615850e-47 |
| Msa0909120 | Msa1356850 | 0.831431 | 1.676238e-55 | -8.615850e-47 |
| Msa0909140 | Msa1356850 | 0.827159 | 1.824526e-54 | -8.615850e-47 |
| Msa0969520 | Msa1356850 | 0.804156 | 2.473180e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356850 | MtrunA17_Chr7g0248821 | 80.851 | 94 | 18 | 0 | 89 | 182 | 104 | 197 | 1.88e-49 | 158 |
| Msa1356850 | MtrunA17_Chr1g0206511 | 79.787 | 94 | 19 | 0 | 89 | 182 | 105 | 198 | 3.13e-49 | 158 |
| Msa1356850 | MtrunA17_Chr1g0173691 | 73.404 | 94 | 25 | 0 | 89 | 182 | 278 | 371 | 7.52e-42 | 144 |
| Msa1356850 | MtrunA17_Chr3g0133361 | 59.574 | 94 | 38 | 0 | 89 | 182 | 200 | 293 | 3.58e-34 | 122 |
| Msa1356850 | MtrunA17_Chr3g0101861 | 58.824 | 102 | 38 | 1 | 81 | 182 | 368 | 465 | 1.28e-32 | 121 |
| Msa1356850 | MtrunA17_Chr3g0139511 | 72.222 | 72 | 20 | 0 | 111 | 182 | 109 | 180 | 2.66e-29 | 106 |
| Msa1356850 | MtrunA17_Chr7g0269671 | 79.630 | 54 | 11 | 0 | 89 | 142 | 279 | 332 | 5.25e-22 | 90.9 |
| Msa1356850 | MtrunA17_Chr6g0472831 | 65.385 | 52 | 18 | 0 | 89 | 140 | 200 | 251 | 1.24e-18 | 80.5 |
| Msa1356850 | MtrunA17_Chr3g0129801 | 72.727 | 44 | 12 | 0 | 89 | 132 | 11 | 54 | 3.53e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356850 | AT5G28780.1 | 54.839 | 93 | 40 | 1 | 91 | 183 | 241 | 331 | 6.12e-27 | 104 |
| Msa1356850 | AT3G51690.1 | 50.549 | 91 | 44 | 1 | 93 | 182 | 241 | 331 | 4.37e-26 | 102 |
| Msa1356850 | AT3G51700.1 | 53.571 | 84 | 38 | 1 | 97 | 179 | 249 | 332 | 8.82e-25 | 99.0 |
Find 34 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCATACCGTCCATTTC+AGG | 0.264379 | tig0015877:-16741 | Msa1356850:CDS |
| TTCTGCTCACCACATTCATT+TGG | 0.317790 | tig0015877:-16712 | Msa1356850:CDS |
| TTGATCTGCAGAACATGCTT+CGG | 0.412355 | tig0015877:-16951 | Msa1356850:intron |
| TGCCTCCGTTGGAATTTAAA+CGG | 0.420787 | tig0015877:+16176 | None:intergenic |
| CACTTCAAATGTTGTTTACA+AGG | 0.425656 | tig0015877:-15964 | Msa1356850:CDS |
| ATTCTAATGACCGATGATAA+TGG | 0.427956 | tig0015877:-16002 | Msa1356850:CDS |
| AAGTTGACCATGTGAAAATA+CGG | 0.443537 | tig0015877:+16067 | None:intergenic |
| AACGGAATCCTTGTGTATGC+AGG | 0.459903 | tig0015877:+16194 | None:intergenic |
| TTGGATGCATCACATATGAT+TGG | 0.476836 | tig0015877:-16922 | Msa1356850:CDS |
| GAATGTGTTGTGGGAAGTTA+AGG | 0.481331 | tig0015877:-17341 | Msa1356850:CDS |
| GAACATGCTTCGGTTTCTGT+TGG | 0.492088 | tig0015877:-16941 | Msa1356850:CDS |
| TTGTAATGGGAATGTGTTGT+GGG | 0.521629 | tig0015877:-17350 | None:intergenic |
| CCATGTGAAAATACGGGTTG+TGG | 0.547197 | tig0015877:+16074 | None:intergenic |
| ACAAAGGAAACTGCCTCCGT+TGG | 0.574748 | tig0015877:+16165 | None:intergenic |
| AGTTGACCATGTGAAAATAC+GGG | 0.574946 | tig0015877:+16068 | None:intergenic |
| TTGGCAGCTAAATCTTGAGT+GGG | 0.575851 | tig0015877:-16795 | Msa1356850:intron |
| CACTTACACCTGCATACACA+AGG | 0.584678 | tig0015877:-16202 | Msa1356850:CDS |
| TCTAGAGTTACATCAAGAGT+TGG | 0.587682 | tig0015877:-16032 | Msa1356850:CDS |
| CGATGATAATGGTGTTAGCA+TGG | 0.588117 | tig0015877:-15991 | Msa1356850:CDS |
| TGGATGCATCACATATGATT+GGG | 0.591969 | tig0015877:-16921 | Msa1356850:CDS |
| GGACAGTCGCTCAAGCAAGT+TGG | 0.592952 | tig0015877:-16107 | Msa1356850:CDS |
| GGATTCCGTTTAAATTCCAA+CGG | 0.596250 | tig0015877:-16181 | Msa1356850:CDS |
| CATGCTAACACCATTATCAT+CGG | 0.603730 | tig0015877:+15992 | None:intergenic |
| ATTGCAAAACATACATACAA+AGG | 0.608882 | tig0015877:+16149 | None:intergenic |
| GCATCACATATGATTGGGTG+TGG | 0.610963 | tig0015877:-16916 | Msa1356850:CDS |
| GTTGGCAGCTAAATCTTGAG+TGG | 0.623493 | tig0015877:-16796 | Msa1356850:intron |
| TGGTTCATGTTGGTACATTG+CGG | 0.638839 | tig0015877:+15934 | None:intergenic |
| TCTCACTATCAGCAGAGATG+CGG | 0.642589 | tig0015877:-16763 | Msa1356850:CDS |
| TTTGTAATGGGAATGTGTTG+TGG | 0.644952 | tig0015877:-17351 | None:intergenic |
| ACAGCAAGTCCAAATGAATG+TGG | 0.648428 | tig0015877:+16703 | None:intergenic |
| TTCCGTTTAAATTCCAACGG+AGG | 0.653695 | tig0015877:-16178 | Msa1356850:CDS |
| TTGTGGGAAGTTAAGGCACA+TGG | 0.658135 | tig0015877:-17334 | Msa1356850:CDS |
| ATGACAATCAACAAGAGTCG+AGG | 0.677625 | tig0015877:-16128 | Msa1356850:CDS |
| TGGCAGCTAAATCTTGAGTG+GGG | 0.727689 | tig0015877:-16794 | Msa1356850:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATACAACTATAAA+AGG | + | tig0015877:16938-16957 | None:intergenic | 10.0% |
| !!! | ATTTTAAATACAACTATAAA+AGG | + | tig0015877:16938-16957 | None:intergenic | 10.0% |
| !!! | CTTGACAAAATTCTATATTT+TGG | - | tig0015877:16157-16176 | Msa1356850:CDS | 20.0% |
| !!! | ATATTTTGTAGTCTTTTGAA+TGG | - | tig0015877:16213-16232 | Msa1356850:intron | 20.0% |
| !!! | TATTTTGTAGTCTTTTGAAT+GGG | - | tig0015877:16214-16233 | Msa1356850:intron | 20.0% |
| !!! | ATCGTCTTATTAGTTATTTT+AGG | - | tig0015877:16280-16299 | Msa1356850:intron | 20.0% |
| !!! | TCTTATTAGTTATTTTAGGT+AGG | - | tig0015877:16284-16303 | Msa1356850:intron | 20.0% |
| !!! | GGTAGGATTTTATATTTTTT+TGG | - | tig0015877:16301-16320 | Msa1356850:intron | 20.0% |
| !! | TTATACAACTCAATTACAAT+AGG | + | tig0015877:16655-16674 | None:intergenic | 20.0% |
| !! | ATGACATCAAAATTATAAGT+TGG | - | tig0015877:16959-16978 | Msa1356850:intron | 20.0% |
| !! | TGACATCAAAATTATAAGTT+GGG | - | tig0015877:16960-16979 | Msa1356850:intron | 20.0% |
| !!! | CTTGACAAAATTCTATATTT+TGG | - | tig0015877:16157-16176 | Msa1356850:CDS | 20.0% |
| !!! | ATATTTTGTAGTCTTTTGAA+TGG | - | tig0015877:16213-16232 | Msa1356850:intron | 20.0% |
| !!! | TATTTTGTAGTCTTTTGAAT+GGG | - | tig0015877:16214-16233 | Msa1356850:intron | 20.0% |
| !!! | ATCGTCTTATTAGTTATTTT+AGG | - | tig0015877:16280-16299 | Msa1356850:intron | 20.0% |
| !!! | TCTTATTAGTTATTTTAGGT+AGG | - | tig0015877:16284-16303 | Msa1356850:intron | 20.0% |
| !!! | GGTAGGATTTTATATTTTTT+TGG | - | tig0015877:16301-16320 | Msa1356850:intron | 20.0% |
| !! | TTATACAACTCAATTACAAT+AGG | + | tig0015877:16655-16674 | None:intergenic | 20.0% |
| !! | ATGACATCAAAATTATAAGT+TGG | - | tig0015877:16959-16978 | Msa1356850:intron | 20.0% |
| !! | TGACATCAAAATTATAAGTT+GGG | - | tig0015877:16960-16979 | Msa1356850:intron | 20.0% |
| ! | AGCTTATACAAAAAATGTTG+AGG | - | tig0015877:15988-16007 | Msa1356850:CDS | 25.0% |
| ! | AAAAATGTTGAGGTAATTTG+AGG | - | tig0015877:15998-16017 | Msa1356850:CDS | 25.0% |
| !!! | GACAAAATTCTATATTTTGG+TGG | - | tig0015877:16160-16179 | Msa1356850:CDS | 25.0% |
| ! | TGAACTATTGGGTAATTAAA+TGG | - | tig0015877:16184-16203 | Msa1356850:CDS | 25.0% |
| !! | ATTTTGTAGTCTTTTGAATG+GGG | - | tig0015877:16215-16234 | Msa1356850:intron | 25.0% |
| ! | CAGTCTAAATCAAAAACAAA+AGG | + | tig0015877:16394-16413 | None:intergenic | 25.0% |
| !! | TGATATATCCATACTGTTTT+AGG | - | tig0015877:16462-16481 | Msa1356850:intron | 25.0% |
| ! | GATACGAAAATTATGTTGAA+AGG | + | tig0015877:16761-16780 | None:intergenic | 25.0% |
| !! | ACTACACATATATCTTTTTC+TGG | + | tig0015877:16832-16851 | None:intergenic | 25.0% |
| !! | AGATATATGTGTAGTGTTTT+TGG | - | tig0015877:16837-16856 | Msa1356850:intron | 25.0% |
| ! | ATTGCAAAACATACATACAA+AGG | + | tig0015877:17137-17156 | None:intergenic | 25.0% |
| ! | AGCTTATACAAAAAATGTTG+AGG | - | tig0015877:15988-16007 | Msa1356850:CDS | 25.0% |
| ! | AAAAATGTTGAGGTAATTTG+AGG | - | tig0015877:15998-16017 | Msa1356850:CDS | 25.0% |
| !!! | GACAAAATTCTATATTTTGG+TGG | - | tig0015877:16160-16179 | Msa1356850:CDS | 25.0% |
| ! | TGAACTATTGGGTAATTAAA+TGG | - | tig0015877:16184-16203 | Msa1356850:CDS | 25.0% |
| !! | ATTTTGTAGTCTTTTGAATG+GGG | - | tig0015877:16215-16234 | Msa1356850:intron | 25.0% |
| ! | CAGTCTAAATCAAAAACAAA+AGG | + | tig0015877:16394-16413 | None:intergenic | 25.0% |
| !! | TGATATATCCATACTGTTTT+AGG | - | tig0015877:16462-16481 | Msa1356850:intron | 25.0% |
| ! | GATACGAAAATTATGTTGAA+AGG | + | tig0015877:16761-16780 | None:intergenic | 25.0% |
| !! | ACTACACATATATCTTTTTC+TGG | + | tig0015877:16832-16851 | None:intergenic | 25.0% |
| !! | AGATATATGTGTAGTGTTTT+TGG | - | tig0015877:16837-16856 | Msa1356850:intron | 25.0% |
| ! | ATTGCAAAACATACATACAA+AGG | + | tig0015877:17137-17156 | None:intergenic | 25.0% |
| TGAGGTTTGGATAAGATAAT+TGG | - | tig0015877:16016-16035 | Msa1356850:CDS | 30.0% | |
| ! | TGAACTAATGGGTAATCATA+TGG | - | tig0015877:16043-16062 | Msa1356850:CDS | 30.0% |
| TTTATCTGAATGAATGACAC+TGG | - | tig0015877:16090-16109 | Msa1356850:CDS | 30.0% | |
| TATATCAACTCCGTTAAAAC+CGG | + | tig0015877:16449-16468 | None:intergenic | 30.0% | |
| AAGTTGACCATGTGAAAATA+CGG | + | tig0015877:17219-17238 | None:intergenic | 30.0% | |
| ATTCTAATGACCGATGATAA+TGG | - | tig0015877:17281-17300 | Msa1356850:intron | 30.0% | |
| ! | CACTTCAAATGTTGTTTACA+AGG | - | tig0015877:17319-17338 | Msa1356850:CDS | 30.0% |
| TGAGGTTTGGATAAGATAAT+TGG | - | tig0015877:16016-16035 | Msa1356850:CDS | 30.0% | |
| ! | TGAACTAATGGGTAATCATA+TGG | - | tig0015877:16043-16062 | Msa1356850:CDS | 30.0% |
| TTTATCTGAATGAATGACAC+TGG | - | tig0015877:16090-16109 | Msa1356850:CDS | 30.0% | |
| TATATCAACTCCGTTAAAAC+CGG | + | tig0015877:16449-16468 | None:intergenic | 30.0% | |
| AAGTTGACCATGTGAAAATA+CGG | + | tig0015877:17219-17238 | None:intergenic | 30.0% | |
| ATTCTAATGACCGATGATAA+TGG | - | tig0015877:17281-17300 | Msa1356850:intron | 30.0% | |
| ! | CACTTCAAATGTTGTTTACA+AGG | - | tig0015877:17319-17338 | Msa1356850:CDS | 30.0% |
| ! | TGTTGAGGTAATTTGAGGTT+TGG | - | tig0015877:16003-16022 | Msa1356850:CDS | 35.0% |
| GGTTTGGATAAGATAATTGG+TGG | - | tig0015877:16019-16038 | Msa1356850:CDS | 35.0% | |
| ! | ATAATTGGTGGCTGAACTAA+TGG | - | tig0015877:16031-16050 | Msa1356850:CDS | 35.0% |
| ! | TAATTGGTGGCTGAACTAAT+GGG | - | tig0015877:16032-16051 | Msa1356850:CDS | 35.0% |
| !!! | TATTTTGGTGGCTGAACTAT+TGG | - | tig0015877:16172-16191 | Msa1356850:CDS | 35.0% |
| !! | ATTTTGGTGGCTGAACTATT+GGG | - | tig0015877:16173-16192 | Msa1356850:CDS | 35.0% |
| !! | GGATAGAGCAATTAGTTCTA+TGG | - | tig0015877:16236-16255 | Msa1356850:intron | 35.0% |
| TTGGATGCATCACATATGAT+TGG | - | tig0015877:16361-16380 | Msa1356850:intron | 35.0% | |
| TGGATGCATCACATATGATT+GGG | - | tig0015877:16362-16381 | Msa1356850:intron | 35.0% | |
| !!! | TCCATACTGTTTTAGGATGT+TGG | - | tig0015877:16469-16488 | Msa1356850:intron | 35.0% |
| GAAAAACATCCTGAAATGGA+CGG | + | tig0015877:16554-16573 | None:intergenic | 35.0% | |
| AGCAGAAAAACATCCTGAAA+TGG | + | tig0015877:16558-16577 | None:intergenic | 35.0% | |
| !! | GAGAAGCATTGACATTTATG+AGG | + | tig0015877:16621-16640 | None:intergenic | 35.0% |
| GGATTCCGTTTAAATTCCAA+CGG | - | tig0015877:17102-17121 | Msa1356850:intron | 35.0% | |
| AGTTGACCATGTGAAAATAC+GGG | + | tig0015877:17218-17237 | None:intergenic | 35.0% | |
| ! | TCTAGAGTTACATCAAGAGT+TGG | - | tig0015877:17251-17270 | Msa1356850:intron | 35.0% |
| CATGCTAACACCATTATCAT+CGG | + | tig0015877:17294-17313 | None:intergenic | 35.0% | |
| ! | TGTTGAGGTAATTTGAGGTT+TGG | - | tig0015877:16003-16022 | Msa1356850:CDS | 35.0% |
| GGTTTGGATAAGATAATTGG+TGG | - | tig0015877:16019-16038 | Msa1356850:CDS | 35.0% | |
| ! | ATAATTGGTGGCTGAACTAA+TGG | - | tig0015877:16031-16050 | Msa1356850:CDS | 35.0% |
| ! | TAATTGGTGGCTGAACTAAT+GGG | - | tig0015877:16032-16051 | Msa1356850:CDS | 35.0% |
| !!! | TATTTTGGTGGCTGAACTAT+TGG | - | tig0015877:16172-16191 | Msa1356850:CDS | 35.0% |
| !! | ATTTTGGTGGCTGAACTATT+GGG | - | tig0015877:16173-16192 | Msa1356850:CDS | 35.0% |
| !! | GGATAGAGCAATTAGTTCTA+TGG | - | tig0015877:16236-16255 | Msa1356850:intron | 35.0% |
| TTGGATGCATCACATATGAT+TGG | - | tig0015877:16361-16380 | Msa1356850:intron | 35.0% | |
| TGGATGCATCACATATGATT+GGG | - | tig0015877:16362-16381 | Msa1356850:intron | 35.0% | |
| !!! | TCCATACTGTTTTAGGATGT+TGG | - | tig0015877:16469-16488 | Msa1356850:intron | 35.0% |
| GAAAAACATCCTGAAATGGA+CGG | + | tig0015877:16554-16573 | None:intergenic | 35.0% | |
| AGCAGAAAAACATCCTGAAA+TGG | + | tig0015877:16558-16577 | None:intergenic | 35.0% | |
| !! | GAGAAGCATTGACATTTATG+AGG | + | tig0015877:16621-16640 | None:intergenic | 35.0% |
| GGATTCCGTTTAAATTCCAA+CGG | - | tig0015877:17102-17121 | Msa1356850:intron | 35.0% | |
| AGTTGACCATGTGAAAATAC+GGG | + | tig0015877:17218-17237 | None:intergenic | 35.0% | |
| ! | TCTAGAGTTACATCAAGAGT+TGG | - | tig0015877:17251-17270 | Msa1356850:intron | 35.0% |
| CATGCTAACACCATTATCAT+CGG | + | tig0015877:17294-17313 | None:intergenic | 35.0% | |
| GAATGTGTTGTGGGAAGTTA+AGG | - | tig0015877:15942-15961 | Msa1356850:CDS | 40.0% | |
| TTGATCTGCAGAACATGCTT+CGG | - | tig0015877:16332-16351 | Msa1356850:intron | 40.0% | |
| GATTTAGACTGTCACCAAGT+TGG | - | tig0015877:16403-16422 | Msa1356850:intron | 40.0% | |
| CTACTCATGCAATTCCAACT+TGG | + | tig0015877:16420-16439 | None:intergenic | 40.0% | |
| ATTGCATGAGTAGTGTGTTC+CGG | - | tig0015877:16427-16446 | Msa1356850:intron | 40.0% | |
| !! | GTAGTGTGTTCCGGTTTTAA+CGG | - | tig0015877:16436-16455 | Msa1356850:intron | 40.0% |
| GCCAACATCCTAAAACAGTA+TGG | + | tig0015877:16473-16492 | None:intergenic | 40.0% | |
| TTGGCAGCTAAATCTTGAGT+GGG | - | tig0015877:16488-16507 | Msa1356850:intron | 40.0% | |
| TTCTGCTCACCACATTCATT+TGG | - | tig0015877:16571-16590 | Msa1356850:intron | 40.0% | |
| ACAGCAAGTCCAAATGAATG+TGG | + | tig0015877:16583-16602 | None:intergenic | 40.0% | |
| !!! | GACTTGCTGTATTTTGTGAG+AGG | - | tig0015877:16593-16612 | Msa1356850:intron | 40.0% |
| ATTACAATAGGCCTGGAGTT+GGG | + | tig0015877:16643-16662 | None:intergenic | 40.0% | |
| AATTACAATAGGCCTGGAGT+TGG | + | tig0015877:16644-16663 | None:intergenic | 40.0% | |
| CAACTCAATTACAATAGGCC+TGG | + | tig0015877:16650-16669 | None:intergenic | 40.0% | |
| CACGCACAGGTCATATAATA+AGG | + | tig0015877:17020-17039 | None:intergenic | 40.0% | |
| CTTATTATATGACCTGTGCG+TGG | - | tig0015877:17018-17037 | Msa1356850:intron | 40.0% | |
| CGATCTAGGTATATATACCC+AGG | - | tig0015877:17054-17073 | Msa1356850:intron | 40.0% | |
| TTCCGTTTAAATTCCAACGG+AGG | - | tig0015877:17105-17124 | Msa1356850:intron | 40.0% | |
| TGCCTCCGTTGGAATTTAAA+CGG | + | tig0015877:17110-17129 | None:intergenic | 40.0% | |
| ATGACAATCAACAAGAGTCG+AGG | - | tig0015877:17155-17174 | Msa1356850:intron | 40.0% | |
| !! | CGATGATAATGGTGTTAGCA+TGG | - | tig0015877:17292-17311 | Msa1356850:intron | 40.0% |
| GAATGTGTTGTGGGAAGTTA+AGG | - | tig0015877:15942-15961 | Msa1356850:CDS | 40.0% | |
| TTGATCTGCAGAACATGCTT+CGG | - | tig0015877:16332-16351 | Msa1356850:intron | 40.0% | |
| GATTTAGACTGTCACCAAGT+TGG | - | tig0015877:16403-16422 | Msa1356850:intron | 40.0% | |
| CTACTCATGCAATTCCAACT+TGG | + | tig0015877:16420-16439 | None:intergenic | 40.0% | |
| ATTGCATGAGTAGTGTGTTC+CGG | - | tig0015877:16427-16446 | Msa1356850:intron | 40.0% | |
| !! | GTAGTGTGTTCCGGTTTTAA+CGG | - | tig0015877:16436-16455 | Msa1356850:intron | 40.0% |
| GCCAACATCCTAAAACAGTA+TGG | + | tig0015877:16473-16492 | None:intergenic | 40.0% | |
| TTGGCAGCTAAATCTTGAGT+GGG | - | tig0015877:16488-16507 | Msa1356850:intron | 40.0% | |
| TTCTGCTCACCACATTCATT+TGG | - | tig0015877:16571-16590 | Msa1356850:intron | 40.0% | |
| ACAGCAAGTCCAAATGAATG+TGG | + | tig0015877:16583-16602 | None:intergenic | 40.0% | |
| !!! | GACTTGCTGTATTTTGTGAG+AGG | - | tig0015877:16593-16612 | Msa1356850:intron | 40.0% |
| ATTACAATAGGCCTGGAGTT+GGG | + | tig0015877:16643-16662 | None:intergenic | 40.0% | |
| AATTACAATAGGCCTGGAGT+TGG | + | tig0015877:16644-16663 | None:intergenic | 40.0% | |
| CAACTCAATTACAATAGGCC+TGG | + | tig0015877:16650-16669 | None:intergenic | 40.0% | |
| CACGCACAGGTCATATAATA+AGG | + | tig0015877:17020-17039 | None:intergenic | 40.0% | |
| CTTATTATATGACCTGTGCG+TGG | - | tig0015877:17018-17037 | Msa1356850:intron | 40.0% | |
| CGATCTAGGTATATATACCC+AGG | - | tig0015877:17054-17073 | Msa1356850:intron | 40.0% | |
| TTCCGTTTAAATTCCAACGG+AGG | - | tig0015877:17105-17124 | Msa1356850:intron | 40.0% | |
| TGCCTCCGTTGGAATTTAAA+CGG | + | tig0015877:17110-17129 | None:intergenic | 40.0% | |
| ATGACAATCAACAAGAGTCG+AGG | - | tig0015877:17155-17174 | Msa1356850:intron | 40.0% | |
| !! | CGATGATAATGGTGTTAGCA+TGG | - | tig0015877:17292-17311 | Msa1356850:intron | 40.0% |
| TTGTGGGAAGTTAAGGCACA+TGG | - | tig0015877:15949-15968 | Msa1356850:CDS | 45.0% | |
| GAACATGCTTCGGTTTCTGT+TGG | - | tig0015877:16342-16361 | Msa1356850:intron | 45.0% | |
| GCATCACATATGATTGGGTG+TGG | - | tig0015877:16367-16386 | Msa1356850:intron | 45.0% | |
| GTTGGCAGCTAAATCTTGAG+TGG | - | tig0015877:16487-16506 | Msa1356850:intron | 45.0% | |
| TGGCAGCTAAATCTTGAGTG+GGG | - | tig0015877:16489-16508 | Msa1356850:intron | 45.0% | |
| TCTCACTATCAGCAGAGATG+CGG | - | tig0015877:16520-16539 | Msa1356850:intron | 45.0% | |
| TTATATGACCTGTGCGTGGA+AGG | - | tig0015877:17022-17041 | Msa1356850:intron | 45.0% | |
| CACTTACACCTGCATACACA+AGG | - | tig0015877:17081-17100 | Msa1356850:intron | 45.0% | |
| AACGGAATCCTTGTGTATGC+AGG | + | tig0015877:17092-17111 | None:intergenic | 45.0% | |
| ! | CCATGTGAAAATACGGGTTG+TGG | + | tig0015877:17212-17231 | None:intergenic | 45.0% |
| ! | CCACAACCCGTATTTTCACA+TGG | - | tig0015877:17209-17228 | Msa1356850:intron | 45.0% |
| TTGTGGGAAGTTAAGGCACA+TGG | - | tig0015877:15949-15968 | Msa1356850:CDS | 45.0% | |
| GAACATGCTTCGGTTTCTGT+TGG | - | tig0015877:16342-16361 | Msa1356850:intron | 45.0% | |
| GCATCACATATGATTGGGTG+TGG | - | tig0015877:16367-16386 | Msa1356850:intron | 45.0% | |
| GTTGGCAGCTAAATCTTGAG+TGG | - | tig0015877:16487-16506 | Msa1356850:intron | 45.0% | |
| TGGCAGCTAAATCTTGAGTG+GGG | - | tig0015877:16489-16508 | Msa1356850:intron | 45.0% | |
| TCTCACTATCAGCAGAGATG+CGG | - | tig0015877:16520-16539 | Msa1356850:intron | 45.0% | |
| TTATATGACCTGTGCGTGGA+AGG | - | tig0015877:17022-17041 | Msa1356850:intron | 45.0% | |
| CACTTACACCTGCATACACA+AGG | - | tig0015877:17081-17100 | Msa1356850:intron | 45.0% | |
| AACGGAATCCTTGTGTATGC+AGG | + | tig0015877:17092-17111 | None:intergenic | 45.0% | |
| ! | CCATGTGAAAATACGGGTTG+TGG | + | tig0015877:17212-17231 | None:intergenic | 45.0% |
| ! | CCACAACCCGTATTTTCACA+TGG | - | tig0015877:17209-17228 | Msa1356850:intron | 45.0% |
| GCTTGCATACCGTCCATTTC+AGG | - | tig0015877:16542-16561 | Msa1356850:intron | 50.0% | |
| TCAATGCTTCTCCCAACTCC+AGG | - | tig0015877:16629-16648 | Msa1356850:intron | 50.0% | |
| GCAGGTGTAAGTGATAGCCT+GGG | + | tig0015877:17074-17093 | None:intergenic | 50.0% | |
| TGCAGGTGTAAGTGATAGCC+TGG | + | tig0015877:17075-17094 | None:intergenic | 50.0% | |
| ACAAAGGAAACTGCCTCCGT+TGG | + | tig0015877:17121-17140 | None:intergenic | 50.0% | |
| GCTTGCATACCGTCCATTTC+AGG | - | tig0015877:16542-16561 | Msa1356850:intron | 50.0% | |
| TCAATGCTTCTCCCAACTCC+AGG | - | tig0015877:16629-16648 | Msa1356850:intron | 50.0% | |
| GCAGGTGTAAGTGATAGCCT+GGG | + | tig0015877:17074-17093 | None:intergenic | 50.0% | |
| TGCAGGTGTAAGTGATAGCC+TGG | + | tig0015877:17075-17094 | None:intergenic | 50.0% | |
| ACAAAGGAAACTGCCTCCGT+TGG | + | tig0015877:17121-17140 | None:intergenic | 50.0% | |
| ATGACCTGTGCGTGGAAGGA+CGG | - | tig0015877:17026-17045 | Msa1356850:intron | 55.0% | |
| GGACAGTCGCTCAAGCAAGT+TGG | - | tig0015877:17176-17195 | Msa1356850:intron | 55.0% | |
| ATGACCTGTGCGTGGAAGGA+CGG | - | tig0015877:17026-17045 | Msa1356850:intron | 55.0% | |
| GGACAGTCGCTCAAGCAAGT+TGG | - | tig0015877:17176-17195 | Msa1356850:intron | 55.0% | |
| TGACCTGTGCGTGGAAGGAC+GGG | - | tig0015877:17027-17046 | Msa1356850:intron | 60.0% | |
| GAAGGACGGGTGGACGATCT+AGG | - | tig0015877:17040-17059 | Msa1356850:intron | 60.0% | |
| TGACCTGTGCGTGGAAGGAC+GGG | - | tig0015877:17027-17046 | Msa1356850:intron | 60.0% | |
| GAAGGACGGGTGGACGATCT+AGG | - | tig0015877:17040-17059 | Msa1356850:intron | 60.0% | |
| CCACCCGTCCTTCCACGCAC+AGG | + | tig0015877:17033-17052 | None:intergenic | 70.0% | |
| CCTGTGCGTGGAAGGACGGG+TGG | - | tig0015877:17030-17049 | Msa1356850:intron | 70.0% | |
| CCACCCGTCCTTCCACGCAC+AGG | + | tig0015877:17033-17052 | None:intergenic | 70.0% | |
| CCTGTGCGTGGAAGGACGGG+TGG | - | tig0015877:17030-17049 | Msa1356850:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015877 | gene | 15938 | 17367 | 15938 | ID=Msa1356850;Name=Msa1356850 |
| tig0015877 | mRNA | 15938 | 17367 | 15938 | ID=Msa1356850-mRNA-1;Parent=Msa1356850;Name=Msa1356850-mRNA-1;_AED=0.72;_eAED=0.80;_QI=0|0|0|0.75|1|1|4|0|184 |
| tig0015877 | exon | 17296 | 17367 | 17296 | ID=Msa1356850-mRNA-1:exon:10214;Parent=Msa1356850-mRNA-1 |
| tig0015877 | exon | 16885 | 16962 | 16885 | ID=Msa1356850-mRNA-1:exon:10213;Parent=Msa1356850-mRNA-1 |
| tig0015877 | exon | 16698 | 16810 | 16698 | ID=Msa1356850-mRNA-1:exon:10212;Parent=Msa1356850-mRNA-1 |
| tig0015877 | exon | 15938 | 16229 | 15938 | ID=Msa1356850-mRNA-1:exon:10211;Parent=Msa1356850-mRNA-1 |
| tig0015877 | CDS | 17296 | 17367 | 17296 | ID=Msa1356850-mRNA-1:cds;Parent=Msa1356850-mRNA-1 |
| tig0015877 | CDS | 16885 | 16962 | 16885 | ID=Msa1356850-mRNA-1:cds;Parent=Msa1356850-mRNA-1 |
| tig0015877 | CDS | 16698 | 16810 | 16698 | ID=Msa1356850-mRNA-1:cds;Parent=Msa1356850-mRNA-1 |
| tig0015877 | CDS | 15938 | 16229 | 15938 | ID=Msa1356850-mRNA-1:cds;Parent=Msa1356850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
