AlfalfaGEDB | Msa1402730

M. sativa cultivar zhongmu-4 / Msa1402730

KEGG: K01942
GO: GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700
PFAM: PF03099.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402730	XP_003601098.1	98.127	267	5	0	1	267	95	361	0.0	556

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402730	sp\|Q9SL92\|HCS1_ARATH	76.316	266	63	0	1	266	102	367	4.71e-157	444

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402730	G7J3L5	98.127	267	5	0	1	267	95	361	0.0	556

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014710	Msa1402730	0.800526	1.383142e-48	-8.615850e-47
Msa0015390	Msa1402730	0.832027	1.194377e-55	-8.615850e-47
Msa0017510	Msa1402730	0.827686	1.363881e-54	-8.615850e-47
Msa0020930	Msa1402730	0.808518	2.977003e-50	-8.615850e-47
Msa0021510	Msa1402730	0.820761	5.782569e-53	-8.615850e-47
Msa0031340	Msa1402730	0.815913	7.246238e-52	-8.615850e-47
Msa0040450	Msa1402730	0.806939	6.448561e-50	-8.615850e-47
Msa0045790	Msa1402730	0.805824	1.107450e-49	-8.615850e-47
Msa0046100	Msa1402730	0.823920	1.067924e-53	-8.615850e-47
Msa0046160	Msa1402730	0.803034	4.227174e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402730	MtrunA17_Chr3g0115071	98.127	267	5	0	1	267	95	361	0.0	556

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402730	AT2G25710.1	76.316	266	63	1	266	102	367	4.79e-158	444
Msa1402730	AT2G25710.2	76.316	266	63	1	266	102	367	4.79e-158	444
Msa1402730	AT2G25710.5	76.316	266	63	1	266	64	329	4.93e-158	442
Msa1402730	AT2G25710.4	76.316	266	63	1	266	64	329	4.93e-158	442
Msa1402730	AT1G37150.2	75.188	266	66	1	266	64	329	6.45e-156	437
Msa1402730	AT1G37150.4	75.299	251	62	16	266	36	286	1.23e-145	409
Msa1402730	AT1G37150.9	71.064	235	68	1	235	64	298	6.41e-129	369
Msa1402730	AT1G37150.3	72.174	230	64	1	230	64	293	1.94e-128	366
Msa1402730	AT1G37150.8	72.174	230	64	1	230	64	293	1.94e-128	366
Msa1402730	AT1G37150.7	72.174	230	64	1	230	64	293	1.94e-128	366

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Find 90 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAATGAGGTCACATTT+CGG	0.436292	tig0022891:-38543	None:intergenic
AAGAAGTTCAATATCAGTGC+AGG	0.537210	tig0022891:+42049	Msa1402730:CDS
AATACACACTGGAAGGTTGA+TGG	0.504856	tig0022891:+40321	Msa1402730:five_prime_UTR
AATGCCTGGGAGTCTCCATT+AGG	0.471596	tig0022891:+41272	Msa1402730:CDS
AATTCATGAATGAACTAAAT+TGG	0.279539	tig0022891:-40810	None:intergenic
AATTTGGCAGGCTTCTCATA+TGG	0.421581	tig0022891:+40848	Msa1402730:CDS
ACTGTATTTAAGGATGTTGT+TGG	0.393939	tig0022891:-42272	None:intergenic
AGCTCCACCCTGATGGTAAT+AGG	0.416462	tig0022891:+45589	Msa1402730:CDS
AGCTGTGGATTGCAGTTTGT+TGG	0.408229	tig0022891:+40645	Msa1402730:five_prime_UTR
AGGAACTATATTACAAGACA+TGG	0.642353	tig0022891:+44840	Msa1402730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAATGAGGTCACATTT+CGG	-	tig0022891:38546-38565	None:intergenic	30.0%
ATATAGCATATGTTGTGCTA+AGG	+	tig0022891:38831-38850	Msa1402730:intron	30.0%
AATCCATAAGGTTACTGTTA+TGG	-	tig0022891:39094-39113	None:intergenic	30.0%
CTCATCAATTTGCCAATAAA+TGG	+	tig0022891:39578-39597	Msa1402730:intron	30.0%
TCGGTTAATAGATATGCAAA+TGG	+	tig0022891:39928-39947	Msa1402730:intron	30.0%
AGAGCAAATACAAATACCTA+GGG	-	tig0022891:40054-40073	None:intergenic	30.0%
AAGAGCAAATACAAATACCT+AGG	-	tig0022891:40055-40074	None:intergenic	30.0%
TCTAACAAATTTGATGCCAT+TGG	+	tig0022891:40085-40104	Msa1402730:intron	30.0%
TTATGAAAGACACAATCCAT+CGG	-	tig0022891:40124-40143	None:intergenic	30.0%
CATGAATGAACTAAATTGGA+AGG	-	tig0022891:40809-40828	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022891	gene	38425	46219	38425	ID=Msa1402730;Name=Msa1402730
tig0022891	mRNA	38425	46219	38425	ID=Msa1402730-mRNA-1;Parent=Msa1402730;Name=Msa1402730-mRNA-1;_AED=0.17;_eAED=0.17;_QI=559\|0.9\|0.81\|1\|0.7\|0.72\|11\|317\|267
tig0022891	exon	38425	38631	38425	ID=Msa1402730-mRNA-1:exon:19069;Parent=Msa1402730-mRNA-1
tig0022891	exon	40314	40442	40314	ID=Msa1402730-mRNA-1:exon:19070;Parent=Msa1402730-mRNA-1
tig0022891	exon	40603	40908	40603	ID=Msa1402730-mRNA-1:exon:19071;Parent=Msa1402730-mRNA-1
tig0022891	exon	41105	41166	41105	ID=Msa1402730-mRNA-1:exon:19072;Parent=Msa1402730-mRNA-1
tig0022891	exon	41261	41409	41261	ID=Msa1402730-mRNA-1:exon:19073;Parent=Msa1402730-mRNA-1
tig0022891	exon	41950	42070	41950	ID=Msa1402730-mRNA-1:exon:19074;Parent=Msa1402730-mRNA-1
tig0022891	exon	42243	42398	42243	ID=Msa1402730-mRNA-1:exon:19075;Parent=Msa1402730-mRNA-1
tig0022891	exon	44825	44870	44825	ID=Msa1402730-mRNA-1:exon:19076;Parent=Msa1402730-mRNA-1
tig0022891	exon	45174	45240	45174	ID=Msa1402730-mRNA-1:exon:19077;Parent=Msa1402730-mRNA-1
tig0022891	exon	45534	45610	45534	ID=Msa1402730-mRNA-1:exon:19078;Parent=Msa1402730-mRNA-1
tig0022891	exon	45860	46219	45860	ID=Msa1402730-mRNA-1:exon:19079;Parent=Msa1402730-mRNA-1
tig0022891	five_prime_UTR	38425	38631	38425	ID=Msa1402730-mRNA-1:five_prime_utr;Parent=Msa1402730-mRNA-1
tig0022891	five_prime_UTR	40314	40442	40314	ID=Msa1402730-mRNA-1:five_prime_utr;Parent=Msa1402730-mRNA-1
tig0022891	five_prime_UTR	40603	40825	40603	ID=Msa1402730-mRNA-1:five_prime_utr;Parent=Msa1402730-mRNA-1
tig0022891	CDS	40826	40908	40826	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	41105	41166	41105	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	41261	41409	41261	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	41950	42070	41950	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	42243	42398	42243	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	44825	44870	44825	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	45174	45240	45174	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	45534	45610	45534	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	CDS	45860	45902	45860	ID=Msa1402730-mRNA-1:cds;Parent=Msa1402730-mRNA-1
tig0022891	three_prime_UTR	45903	46219	45903	ID=Msa1402730-mRNA-1:three_prime_utr;Parent=Msa1402730-mRNA-1

Gene Sequence

>Msa1402730

ATGAATTCTCTTTCTACCAATCAATTTGGCAGGCTTCTCATATGGTCTCCTGAGTTAACTTCGACACATGATGTCGTTTCACACAACTTTTGTGAGCTTCCGGTTGGTACAGTATGTGTTGGTGATATCCAGAACAAGGGAAGAGGTCGGTCAAAGAATGCCTGGGAGTCTCCATTAGGTTGCCTGATGTTTTCTTTTACTCTGCAAATGGAGGATGGACGGGTCGTTCCTTTAGTTCAGTATGTTGTTTCCTTGGCTATCACAGAGGCAATCAAGGATATCTGTGACAAAAATGGATTGCCGTGCATTGATGTTAAAATCAAGTGGCCAAATGATCTGTACTTAAACGGATTTAAAGTTGGAGGCATTCTTTGCACCTCTACATATAAATCAAAGAAGTTCAATATCAGTGCAGGAATAGGATTGAATGTCAATAATGAGAAGCCAACAACATCCTTAAATACAGTTCTAAGAGAATTGTCTGTGGGAGCTTACCAATTTCAAAGAGAAGATGTTCTGGCAGCCTTTTTTAACAAATTTGAGAAGTTTTTTGATCTATTTTTGAATCAAGGATTTCAAACCCTAGAGGAACTATATTACAAGACATGGTTGCACAGTGGACAGAGAGTTATTGTACAAGAAAAGAACGAGGACAAAGTAGTCGAACATGCGGTAACGATTCAGGGTTTGACGTCCTCGGGATATTTGTTGGCAGTCGGTGATGACAACCAAATGTGTGAGCTCCACCCTGATGGTAATAGCTTTGACTTTTTCAAAGGACTAGTCAGAAGGAAACTTGAATGA

Protein sequence

>Msa1402730

MNSLSTNQFGRLLIWSPELTSTHDVVSHNFCELPVGTVCVGDIQNKGRGRSKNAWESPLGCLMFSFTLQMEDGRVVPLVQYVVSLAITEAIKDICDKNGLPCIDVKIKWPNDLYLNGFKVGGILCTSTYKSKKFNISAGIGLNVNNEKPTTSLNTVLRELSVGAYQFQREDVLAAFFNKFEKFFDLFLNQGFQTLEELYYKTWLHSGQRVIVQEKNEDKVVEHAVTIQGLTSSGYLLAVGDDNQMCELHPDGNSFDFFKGLVRRKLE*