AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464940 MtrunA17_Chr4g0002171 98.015 403 8 0 1 403 58 460 0.0 820
Msa1464940 MtrunA17_Chr8g0391901 27.606 355 223 12 28 374 283 611 1.40e-27 115
Msa1464940 MtrunA17_Chr2g0297971 26.615 387 239 16 1 376 241 593 5.19e-27 113
Msa1464940 MtrunA17_Chr1g0192821 28.302 265 151 12 115 377 25 252 3.19e-15 77.4
Msa1464940 MtrunA17_Chr1g0192821 29.167 312 180 16 61 370 25 297 6.47e-15 76.6
Msa1464940 MtrunA17_Chr2g0286241 27.542 236 141 8 146 376 59 269 8.34e-14 73.2
Msa1464940 MtrunA17_Chr1g0197401 26.160 237 131 9 152 374 3 209 6.91e-13 70.1
Msa1464940 MtrunA17_Chr1g0198221 27.679 336 177 18 61 373 17 309 4.34e-12 67.8
Msa1464940 MtrunA17_Chr1g0198221 26.299 308 188 17 61 353 74 357 6.49e-11 63.9
Msa1464940 MtrunA17_Chr2g0322121 29.018 224 129 10 159 378 150 347 1.21e-11 66.6
Msa1464940 MtrunA17_Chr1g0196221 28.111 217 132 8 163 378 86 279 1.29e-11 66.2
Msa1464940 MtrunA17_Chr2g0311721 26.482 253 149 12 63 309 20 241 8.41e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464940 AT1G51550.1 59.709 412 146 6 1 401 61 463 4.62e-170 484
Msa1464940 AT2G18915.1 28.312 385 233 17 1 376 229 579 3.02e-30 122
Msa1464940 AT2G18915.2 28.571 385 232 17 1 376 239 589 3.93e-30 122
Msa1464940 AT1G68050.1 29.745 353 213 17 28 374 272 595 1.76e-27 115
Msa1464940 AT5G57360.1 27.907 387 234 18 1 376 238 590 4.61e-27 113
Msa1464940 AT5G57360.2 27.907 387 234 18 1 376 238 590 5.03e-27 113
Msa1464940 AT2G36360.5 29.377 337 179 20 61 373 17 318 7.72e-14 73.6
Msa1464940 AT2G36360.3 28.313 332 180 18 61 373 17 309 6.87e-13 70.5
Msa1464940 AT2G36360.2 28.916 332 178 19 61 373 17 309 7.09e-13 70.5
Msa1464940 AT2G36360.1 28.916 332 178 19 61 373 17 309 7.09e-13 70.5
Msa1464940 AT2G36360.4 28.012 332 181 17 61 373 17 309 7.38e-13 70.5
Msa1464940 AT1G08420.2 29.464 224 128 10 159 378 171 368 1.10e-12 70.5
Msa1464940 AT1G08420.1 29.464 224 128 10 159 378 171 368 1.19e-12 70.5
Msa1464940 AT1G74150.4 26.103 272 169 9 115 384 56 297 1.51e-12 69.7
Msa1464940 AT1G18610.1 25.145 346 211 15 61 394 22 331 1.66e-12 69.3
Msa1464940 AT1G18610.2 25.145 346 211 15 61 394 22 331 1.66e-12 69.3
Msa1464940 AT1G74150.1 26.103 272 169 9 115 384 72 313 2.52e-12 68.9
Msa1464940 AT2G27210.2 29.018 224 129 10 159 378 160 357 2.63e-12 69.3
Msa1464940 AT1G74150.3 26.103 272 169 9 115 384 72 313 2.65e-12 68.9
Msa1464940 AT1G74150.2 26.103 272 169 9 115 384 72 313 2.67e-12 68.9
Msa1464940 AT2G27210.1 29.018 224 129 10 159 378 160 357 2.80e-12 69.3

Find 90 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTAGGTTGTTAATTTA+TGG 0.139839 tig0044760:+1906 Msa1464940:CDS
TTATTAGCATTATAGGTTTA+TGG 0.192786 tig0044760:+2427 Msa1464940:three_prime_UTR
GCATTGTTTATTAGCATTAT+AGG 0.230546 tig0044760:+2420 Msa1464940:three_prime_UTR
GATGATTTCCTTGTTCTCTT+TGG 0.258038 tig0044760:+1387 Msa1464940:CDS
GACTTCACGGCCTTCGTTTA+GGG 0.260841 tig0044760:+1595 Msa1464940:CDS
GCTTCATGATGTATGGTTAT+TGG 0.269291 tig0044760:+1776 Msa1464940:CDS
GGACTTCACGGCCTTCGTTT+AGG 0.277584 tig0044760:+1594 Msa1464940:CDS
GTTCAACCTGTTGAACCTTC+TGG 0.284085 tig0044760:+2146 Msa1464940:CDS
AATACAGCAACTACTCAATT+AGG 0.317271 tig0044760:+2368 Msa1464940:three_prime_UTR
ATGGTAATCCATGGAGGAAT+TGG 0.346210 tig0044760:+1573 Msa1464940:CDS
CCTGTTGAACCTTCTGGACT+TGG 0.354019 tig0044760:+2152 Msa1464940:CDS
TTTGTATGTGTTTGGTGGAA+TGG 0.359174 tig0044760:+2112 Msa1464940:CDS
TGACTTGCATTGGAAGAAAT+AGG 0.362144 tig0044760:+1715 Msa1464940:CDS
GGCATACCAAGTGGAAGATT+TGG 0.363811 tig0044760:+1345 Msa1464940:CDS
TCAACTCTAAGGACTAATTA+AGG 0.370650 tig0044760:+2211 Msa1464940:exon
GGTCGTTATTTGTATGTGTT+TGG 0.379139 tig0044760:+2104 Msa1464940:CDS
TTTGAACTTGCTGTGGTTGA+AGG 0.384453 tig0044760:-1990 None:intergenic
TCTTCCATTTCAATATTCTC+TGG 0.397428 tig0044760:-1311 None:intergenic
CGTGCCTGCGTAGATCCTTC+TGG 0.398486 tig0044760:+2083 Msa1464940:CDS
TTGTCAGATAGTCATTGTTT+CGG 0.403264 tig0044760:+1636 Msa1464940:CDS
AAATGGAAGACAGTTCATTC+AGG 0.403941 tig0044760:+1324 Msa1464940:CDS
CCATCGCCTCCGCCACGTTC+AGG 0.406508 tig0044760:+1684 Msa1464940:CDS
GATTTCCTTGTTCTCTTTGG+AGG 0.411789 tig0044760:+1390 Msa1464940:CDS
TTCTGGACTTGGATTTGATA+AGG 0.415767 tig0044760:+2163 Msa1464940:CDS
TCATGGAAAATGATAGATGT+TGG 0.416089 tig0044760:+1492 Msa1464940:CDS
GAGCTTGTGCTTCAACTCTA+AGG 0.421662 tig0044760:+2200 Msa1464940:CDS
CATGGAAAATGATAGATGTT+GGG 0.424832 tig0044760:+1493 Msa1464940:CDS
GACACGTGGGTGGCATATAT+TGG 0.425018 tig0044760:+1279 Msa1464940:CDS
TGGTCATACATGTGTGGAAA+TGG 0.431263 tig0044760:+1365 Msa1464940:CDS
ATTTCCAGAGAATATTGAAA+TGG 0.442502 tig0044760:+1307 Msa1464940:CDS
CCAAGTCCAGAAGGTTCAAC+AGG 0.443345 tig0044760:-2152 None:intergenic
CACTCTCTTTGAACTTGCTG+TGG 0.455008 tig0044760:-1997 None:intergenic
TGGAAACGATGGAAATCAAA+TGG 0.459866 tig0044760:+2032 Msa1464940:CDS
GAGTGTTGCTCCACCACCTA+GGG 0.460059 tig0044760:+1515 Msa1464940:CDS
GGTAGGTTGTTAATTTATGG+AGG 0.460207 tig0044760:+1909 Msa1464940:CDS
CGTCAAAATGATACATGGAT+TGG 0.465503 tig0044760:+1432 Msa1464940:CDS
GTGTTTGGTGGAATGGTGGA+TGG 0.468198 tig0044760:+2119 Msa1464940:CDS
ATGAAGTGCTTCATGATGTA+TGG 0.478974 tig0044760:+1769 Msa1464940:CDS
CTTGCCAAGGTTACATGAGA+TGG 0.479976 tig0044760:+1802 Msa1464940:CDS
CGTTATTTGTATGTGTTTGG+TGG 0.484542 tig0044760:+2107 Msa1464940:CDS
GGACACACGTTGACTTGCAT+TGG 0.486949 tig0044760:+1705 Msa1464940:CDS
CCTGAACGTGGCGGAGGCGA+TGG 0.489645 tig0044760:-1684 None:intergenic
TTTGGAGGCATCAATGATCA+TGG 0.493134 tig0044760:+1405 Msa1464940:CDS
AGAGAGTGTTGACGAGGATG+TGG 0.493745 tig0044760:+2012 Msa1464940:CDS
CATGGAGGAATTGGACTTCA+CGG 0.495304 tig0044760:+1582 Msa1464940:CDS
GGTATTTCACTTCCTAGAGT+TGG 0.496132 tig0044760:+1861 Msa1464940:CDS
CTTATCTGATTGAAAATACA+TGG 0.496690 tig0044760:-2300 None:intergenic
ATAGTCATTGTTTCGGCACA+TGG 0.499649 tig0044760:+1643 Msa1464940:CDS
GCATGAGCTCCCCTAGGTGG+TGG 0.503523 tig0044760:-1525 None:intergenic
GGAGTGTTGCTCCACCACCT+AGG 0.505879 tig0044760:+1514 Msa1464940:CDS
GTATGTGTTTGGTGGAATGG+TGG 0.507525 tig0044760:+2115 Msa1464940:CDS
AGTTGGTCACACTGCTACAA+TGG 0.510947 tig0044760:+1878 Msa1464940:CDS
CTAGGAAGTGAAATACCATC+TGG 0.516166 tig0044760:-1855 None:intergenic
ACTTCACGGCCTTCGTTTAG+GGG 0.526092 tig0044760:+1596 Msa1464940:CDS
AACGTGGCGGAGGCGATGGA+TGG 0.538917 tig0044760:-1680 None:intergenic
ATGCCACCCACGTGTCATCA+AGG 0.541647 tig0044760:-1272 None:intergenic
ACTTGCTGTGGTTGAAGGAA+TGG 0.543167 tig0044760:-1985 None:intergenic
GTGTGTCCTGAACGTGGCGG+AGG 0.547895 tig0044760:-1690 None:intergenic
GAATCCATCTCATGTAACCT+TGG 0.555112 tig0044760:-1806 None:intergenic
GTAGCAGTGTGACCAACTCT+AGG 0.558419 tig0044760:-1873 None:intergenic
GAGAAGACTCATCAAGACAT+AGG 0.561244 tig0044760:+1931 Msa1464940:CDS
TGGTTATTGGATACTTGCCA+AGG 0.561263 tig0044760:+1789 Msa1464940:CDS
TTGCATCGACGACAAGAGAA+TGG 0.566710 tig0044760:+1554 Msa1464940:CDS
GACAAGAGAATGGTAATCCA+TGG 0.574745 tig0044760:+1564 Msa1464940:CDS
GAAACCGTCAAAATGATACA+TGG 0.591830 tig0044760:+1427 Msa1464940:CDS
GCCTTCGTTTAGGGGACACA+TGG 0.593734 tig0044760:+1604 Msa1464940:CDS
TGATGCCTCCAAAGAGAACA+AGG 0.601552 tig0044760:-1395 None:intergenic
CAAGCAGCATGAGCTCCCCT+AGG 0.602113 tig0044760:-1531 None:intergenic
TTATCAAATCCAAGTCCAGA+AGG 0.606895 tig0044760:-2161 None:intergenic
GATTTACAAAACATACCAGA+TGG 0.608221 tig0044760:+1840 Msa1464940:CDS
TATGCTAACACATGACATAG+TGG 0.613330 tig0044760:-2271 None:intergenic
ACATACAAATAACGACCAGA+AGG 0.627124 tig0044760:-2098 None:intergenic
GACGACACCTTGATGACACG+TGG 0.627520 tig0044760:+1265 Msa1464940:CDS
GTATGACCAAATCTTCCACT+TGG 0.629532 tig0044760:-1351 None:intergenic
CGTGAAGTCCAATTCCTCCA+TGG 0.635655 tig0044760:-1581 None:intergenic
GCAGCATGAGCTCCCCTAGG+TGG 0.638154 tig0044760:-1528 None:intergenic
GTTATACACAATGAAAACAA+AGG 0.653684 tig0044760:+1459 Msa1464940:CDS
CGATGAAACGATCTAGACTT+CGG 0.657515 tig0044760:-2062 None:intergenic
ACACCTTGATGACACGTGGG+TGG 0.657803 tig0044760:+1269 Msa1464940:CDS
GTCAACGTGTGTCCTGAACG+TGG 0.663195 tig0044760:-1696 None:intergenic
GTTCATTCAGGCATACCAAG+TGG 0.677159 tig0044760:+1336 Msa1464940:CDS
TCCATGTGTCCCCTAAACGA+AGG 0.678498 tig0044760:-1605 None:intergenic
AGTGTTGCTCCACCACCTAG+GGG 0.681365 tig0044760:+1516 Msa1464940:CDS
ACGACCAGAAGGATCTACGC+AGG 0.686097 tig0044760:-2087 None:intergenic
GTTCAAAGAGAGTGTTGACG+AGG 0.688260 tig0044760:+2006 Msa1464940:CDS
TGACGAGGATGTGGAAACGA+TGG 0.693492 tig0044760:+2021 Msa1464940:CDS
AAGAGAATGGTAATCCATGG+AGG 0.711153 tig0044760:+1567 Msa1464940:CDS
ACGACACCTTGATGACACGT+GGG 0.729987 tig0044760:+1266 Msa1464940:CDS
AAGATTTGGTCATACATGTG+TGG 0.738733 tig0044760:+1359 Msa1464940:CDS
AACGTGTGTCCTGAACGTGG+CGG 0.807074 tig0044760:-1693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAAAGAAAAAAAACA+TGG - tig0044760:274-293 None:intergenic 15.0%
!!! ATAAATTTAGAAGTTGATTA+CGG + tig0044760:815-834 Msa1464940:intron 15.0%
!!! GTTTTTTTTCTTTCTATTTG+TGG + tig0044760:275-294 Msa1464940:intron 20.0%
!! TTACAGTAATTGATGTAAAT+CGG + tig0044760:930-949 Msa1464940:intron 20.0%
!! TGTATAAATAATTCATATGG+TGG - tig0044760:1055-1074 None:intergenic 20.0%
!! CAGTGTATAAATAATTCATA+TGG - tig0044760:1058-1077 None:intergenic 20.0%
!!! GTGAAAATTGTAAAAACTTT+TGG + tig0044760:2398-2417 Msa1464940:three_prime_UTR 20.0%
!! TTATTAGCATTATAGGTTTA+TGG + tig0044760:2427-2446 Msa1464940:three_prime_UTR 20.0%
! CTATAAGCAAATATATCAGA+TGG + tig0044760:108-127 Msa1464940:CDS 25.0%
! ATTATTTACCCTAAAGAGAA+AGG + tig0044760:433-452 Msa1464940:intron 25.0%
! GTTTAATTCCTTTCTCTTTA+GGG - tig0044760:444-463 None:intergenic 25.0%
! TGTTTAATTCCTTTCTCTTT+AGG - tig0044760:445-464 None:intergenic 25.0%
! TAAAGAGAAAGGAATTAAAC+AGG + tig0044760:444-463 Msa1464940:intron 25.0%
!!! GCATTGACTTAAAAATTAGA+CGG - tig0044760:612-631 None:intergenic 25.0%
! TACAGTAATTGATGTAAATC+GGG + tig0044760:931-950 Msa1464940:intron 25.0%
! AGGTAAAAAAATCCTTCTTA+TGG - tig0044760:1006-1025 None:intergenic 25.0%
!! TTATTTATACACTGCCTTTT+TGG + tig0044760:1064-1083 Msa1464940:intron 25.0%
!!! TTTGTTTTGTGCTTTGTTTT+AGG + tig0044760:1243-1262 Msa1464940:intron 25.0%
! ATTTCCAGAGAATATTGAAA+TGG + tig0044760:1307-1326 Msa1464940:CDS 25.0%
! GTTATACACAATGAAAACAA+AGG + tig0044760:1459-1478 Msa1464940:CDS 25.0%
!! AGAAATAGGACAATACTTTT+CGG + tig0044760:1729-1748 Msa1464940:CDS 25.0%
!! ACATAGGAAAAATGACTTTT+GGG + tig0044760:1947-1966 Msa1464940:CDS 25.0%
! CTTATCTGATTGAAAATACA+TGG - tig0044760:2303-2322 None:intergenic 25.0%
! GCATTGTTTATTAGCATTAT+AGG + tig0044760:2420-2439 Msa1464940:three_prime_UTR 25.0%
AAACTGATGAACATGATGAT+TGG - tig0044760:74-93 None:intergenic 30.0%
! ATCATGTTCATCAGTTTTCA+TGG + tig0044760:77-96 Msa1464940:CDS 30.0%
TTTCATAAGTGAGATTCACA+TGG + tig0044760:328-347 Msa1464940:intron 30.0%
GTATCGTAATTGTTACAATG+AGG + tig0044760:571-590 Msa1464940:intron 30.0%
TTAGACCGTTAATAGACAAA+AGG + tig0044760:678-697 Msa1464940:intron 30.0%
! TTAGAAGTTGATTACGGTTT+AGG + tig0044760:821-840 Msa1464940:intron 30.0%
TACTTGATCTTACCATAAGA+AGG + tig0044760:991-1010 Msa1464940:intron 30.0%
!!! AAGAAGGATTTTTTTACCTG+TGG + tig0044760:1007-1026 Msa1464940:intron 30.0%
ATTAGTCAAATCTCGACTAT+TGG + tig0044760:1101-1120 Msa1464940:intron 30.0%
TCTTCCATTTCAATATTCTC+TGG - tig0044760:1314-1333 None:intergenic 30.0%
! CAATCCATGTATCATTTTGA+CGG - tig0044760:1434-1453 None:intergenic 30.0%
!!! ACAAAGGCATTACATTTTCA+TGG + tig0044760:1475-1494 Msa1464940:CDS 30.0%
TCATGGAAAATGATAGATGT+TGG + tig0044760:1492-1511 Msa1464940:CDS 30.0%
CATGGAAAATGATAGATGTT+GGG + tig0044760:1493-1512 Msa1464940:CDS 30.0%
TTGTCAGATAGTCATTGTTT+CGG + tig0044760:1636-1655 Msa1464940:CDS 30.0%
GATTTACAAAACATACCAGA+TGG + tig0044760:1840-1859 Msa1464940:CDS 30.0%
! GACATAGGAAAAATGACTTT+TGG + tig0044760:1946-1965 Msa1464940:CDS 30.0%
!! TTTGATAAGGAGCTTTTTCT+TGG + tig0044760:2176-2195 Msa1464940:CDS 30.0%
!! TTGATAAGGAGCTTTTTCTT+GGG + tig0044760:2177-2196 Msa1464940:CDS 30.0%
! TCAACTCTAAGGACTAATTA+AGG + tig0044760:2211-2230 Msa1464940:exon 30.0%
AATACAGCAACTACTCAATT+AGG + tig0044760:2368-2387 Msa1464940:three_prime_UTR 30.0%
CATAAATTGTCATACCCTCA+TGG + tig0044760:145-164 Msa1464940:CDS 35.0%
GGAAATCTAAATCTCCATGA+GGG - tig0044760:162-181 None:intergenic 35.0%
!!! ATGGCTTCTAGTTTTAGACT+AGG + tig0044760:347-366 Msa1464940:intron 35.0%
ATTAGACGGTTAGTAGACAA+AGG - tig0044760:598-617 None:intergenic 35.0%
! CAGGTCCTTTTGTCTATTAA+CGG - tig0044760:686-705 None:intergenic 35.0%
AAGGACCTGATTGTAACAAT+TGG + tig0044760:697-716 Msa1464940:intron 35.0%
AGGACCTGATTGTAACAATT+GGG + tig0044760:698-717 Msa1464940:intron 35.0%
GTGGCATAATCTCCAAATAT+AGG - tig0044760:1036-1055 None:intergenic 35.0%
!!! CTAGGTTTTGAAGTCCAAAA+AGG - tig0044760:1081-1100 None:intergenic 35.0%
AGTCGAGATTTGACTAATCT+AGG - tig0044760:1099-1118 None:intergenic 35.0%
TTTCACTAAAGATGCTTCAG+AGG + tig0044760:1183-1202 Msa1464940:intron 35.0%
AAATGGAAGACAGTTCATTC+AGG + tig0044760:1324-1343 Msa1464940:CDS 35.0%
! AAGATTTGGTCATACATGTG+TGG + tig0044760:1359-1378 Msa1464940:CDS 35.0%
GATGATTTCCTTGTTCTCTT+TGG + tig0044760:1387-1406 Msa1464940:CDS 35.0%
GAAACCGTCAAAATGATACA+TGG + tig0044760:1427-1446 Msa1464940:CDS 35.0%
CGTCAAAATGATACATGGAT+TGG + tig0044760:1432-1451 Msa1464940:CDS 35.0%
! TGACTTGCATTGGAAGAAAT+AGG + tig0044760:1715-1734 Msa1464940:CDS 35.0%
! AATAGGACAATACTTTTCGG+AGG + tig0044760:1732-1751 Msa1464940:CDS 35.0%
! ATGAAGTGCTTCATGATGTA+TGG + tig0044760:1769-1788 Msa1464940:CDS 35.0%
GCTTCATGATGTATGGTTAT+TGG + tig0044760:1776-1795 Msa1464940:CDS 35.0%
GGAGGTAGGTTGTTAATTTA+TGG + tig0044760:1906-1925 Msa1464940:CDS 35.0%
GGTAGGTTGTTAATTTATGG+AGG + tig0044760:1909-1928 Msa1464940:CDS 35.0%
TGGAAACGATGGAAATCAAA+TGG + tig0044760:2032-2051 Msa1464940:CDS 35.0%
ACATACAAATAACGACCAGA+AGG - tig0044760:2101-2120 None:intergenic 35.0%
GGTCGTTATTTGTATGTGTT+TGG + tig0044760:2104-2123 Msa1464940:CDS 35.0%
CGTTATTTGTATGTGTTTGG+TGG + tig0044760:2107-2126 Msa1464940:CDS 35.0%
! TTTGTATGTGTTTGGTGGAA+TGG + tig0044760:2112-2131 Msa1464940:CDS 35.0%
TTATCAAATCCAAGTCCAGA+AGG - tig0044760:2164-2183 None:intergenic 35.0%
TTCTGGACTTGGATTTGATA+AGG + tig0044760:2163-2182 Msa1464940:CDS 35.0%
!! TGATAAGGAGCTTTTTCTTG+GGG + tig0044760:2178-2197 Msa1464940:CDS 35.0%
TATGCTAACACATGACATAG+TGG - tig0044760:2274-2293 None:intergenic 35.0%
ACTCAAGTCTCTCTTGCATA+AGG - tig0044760:11-30 None:intergenic 40.0%
AGACTTGAGTTCAACATGTG+TGG + tig0044760:21-40 Msa1464940:CDS 40.0%
GGGAAATCTAAATCTCCATG+AGG - tig0044760:163-182 None:intergenic 40.0%
AGTGAGAAGCTCTTGCTTTA+GGG - tig0044760:183-202 None:intergenic 40.0%
! TCTGACTGTCTTGTCTTGTT+TGG + tig0044760:217-236 Msa1464940:CDS 40.0%
GCACTAACTTAGACCAACAT+TGG + tig0044760:630-649 Msa1464940:intron 40.0%
! TAGACCAACATTGGCTACAT+AGG + tig0044760:639-658 Msa1464940:intron 40.0%
ACTGCCCAATTGTTACAATC+AGG - tig0044760:705-724 None:intergenic 40.0%
!! CAATTGGGCAGTTTGCTATA+TGG + tig0044760:713-732 Msa1464940:intron 40.0%
TTGGTCCTCGTGTTTCAATT+GGG - tig0044760:752-771 None:intergenic 40.0%
TTTGGTCCTCGTGTTTCAAT+TGG - tig0044760:753-772 None:intergenic 40.0%
GGACCAAAATTGTACAATCC+TGG + tig0044760:765-784 Msa1464940:intron 40.0%
! GTGCCAGGATTGTACAATTT+TGG - tig0044760:771-790 None:intergenic 40.0%
TGATTACGGTTTAGGTGATG+TGG + tig0044760:829-848 Msa1464940:intron 40.0%
GCATTTCATTCAACTTGCCT+AGG + tig0044760:961-980 Msa1464940:intron 40.0%
AGATCAAGTAGAAGTCTCCT+AGG - tig0044760:981-1000 None:intergenic 40.0%
TACCTGTGGACTCCTATATT+TGG + tig0044760:1021-1040 Msa1464940:intron 40.0%
GTATGACCAAATCTTCCACT+TGG - tig0044760:1354-1373 None:intergenic 40.0%
TGGTCATACATGTGTGGAAA+TGG + tig0044760:1365-1384 Msa1464940:CDS 40.0%
GATTTCCTTGTTCTCTTTGG+AGG + tig0044760:1390-1409 Msa1464940:CDS 40.0%
!! TTTGGAGGCATCAATGATCA+TGG + tig0044760:1405-1424 Msa1464940:CDS 40.0%
GACAAGAGAATGGTAATCCA+TGG + tig0044760:1564-1583 Msa1464940:CDS 40.0%
AAGAGAATGGTAATCCATGG+AGG + tig0044760:1567-1586 Msa1464940:CDS 40.0%
ATGGTAATCCATGGAGGAAT+TGG + tig0044760:1573-1592 Msa1464940:CDS 40.0%
ATAGTCATTGTTTCGGCACA+TGG + tig0044760:1643-1662 Msa1464940:CDS 40.0%
! ACAATACTTTTCGGAGGTAG+AGG + tig0044760:1738-1757 Msa1464940:CDS 40.0%
TGGTTATTGGATACTTGCCA+AGG + tig0044760:1789-1808 Msa1464940:CDS 40.0%
GAATCCATCTCATGTAACCT+TGG - tig0044760:1809-1828 None:intergenic 40.0%
CTAGGAAGTGAAATACCATC+TGG - tig0044760:1858-1877 None:intergenic 40.0%
GGTATTTCACTTCCTAGAGT+TGG + tig0044760:1861-1880 Msa1464940:CDS 40.0%
! CACACTGCTACAATGGTTTT+AGG + tig0044760:1885-1904 Msa1464940:CDS 40.0%
!!! ACTGCTACAATGGTTTTAGG+AGG + tig0044760:1888-1907 Msa1464940:CDS 40.0%
!!! CTACAATGGTTTTAGGAGGT+AGG + tig0044760:1892-1911 Msa1464940:CDS 40.0%
GAGAAGACTCATCAAGACAT+AGG + tig0044760:1931-1950 Msa1464940:CDS 40.0%
!! TTTGAACTTGCTGTGGTTGA+AGG - tig0044760:1993-2012 None:intergenic 40.0%
CGATGAAACGATCTAGACTT+CGG - tig0044760:2065-2084 None:intergenic 40.0%
GAGTGAGAAGCTCTTGCTTT+AGG - tig0044760:184-203 None:intergenic 45.0%
!! GACTGTCTTGTCTTGTTTGG+TGG + tig0044760:220-239 Msa1464940:CDS 45.0%
!! TGTCTTGTCTTGTTTGGTGG+TGG + tig0044760:223-242 Msa1464940:CDS 45.0%
AGAGACTCAAGTCGCACAAT+TGG - tig0044760:548-567 None:intergenic 45.0%
TTGTGCGACTTGAGTCTCTT+AGG + tig0044760:549-568 Msa1464940:intron 45.0%
AGAGCCTATGTAGCCAATGT+TGG - tig0044760:646-665 None:intergenic 45.0%
!! TTGGGCAGTTTGCTATATGG+AGG + tig0044760:716-735 Msa1464940:intron 45.0%
ATTCGCCCAATTGAAACACG+AGG + tig0044760:744-763 Msa1464940:intron 45.0%
! CACTTTTGTACTCAAGTGCC+AGG - tig0044760:786-805 None:intergenic 45.0%
CTCCAAATATAGGAGTCCAC+AGG - tig0044760:1026-1045 None:intergenic 45.0%
GTTCATTCAGGCATACCAAG+TGG + tig0044760:1336-1355 Msa1464940:CDS 45.0%
GGCATACCAAGTGGAAGATT+TGG + tig0044760:1345-1364 Msa1464940:CDS 45.0%
TGATGCCTCCAAAGAGAACA+AGG - tig0044760:1398-1417 None:intergenic 45.0%
! TTGCATCGACGACAAGAGAA+TGG + tig0044760:1554-1573 Msa1464940:CDS 45.0%
CATGGAGGAATTGGACTTCA+CGG + tig0044760:1582-1601 Msa1464940:CDS 45.0%
! CTTTTCGGAGGTAGAGGTTT+AGG + tig0044760:1744-1763 Msa1464940:CDS 45.0%
CTTGCCAAGGTTACATGAGA+TGG + tig0044760:1802-1821 Msa1464940:CDS 45.0%
AGTTGGTCACACTGCTACAA+TGG + tig0044760:1878-1897 Msa1464940:CDS 45.0%
!! ACTTGCTGTGGTTGAAGGAA+TGG - tig0044760:1988-2007 None:intergenic 45.0%
!! CACTCTCTTTGAACTTGCTG+TGG - tig0044760:2000-2019 None:intergenic 45.0%
!! GTTCAAAGAGAGTGTTGACG+AGG + tig0044760:2006-2025 Msa1464940:CDS 45.0%
! GTATGTGTTTGGTGGAATGG+TGG + tig0044760:2115-2134 Msa1464940:CDS 45.0%
GTTCAACCTGTTGAACCTTC+TGG + tig0044760:2146-2165 Msa1464940:CDS 45.0%
GAGCTTGTGCTTCAACTCTA+AGG + tig0044760:2200-2219 Msa1464940:CDS 45.0%
!! TTGTTTGGTGGTGGCTGTGA+TGG + tig0044760:232-251 Msa1464940:CDS 50.0%
! ACGACACCTTGATGACACGT+GGG + tig0044760:1266-1285 Msa1464940:CDS 50.0%
GACACGTGGGTGGCATATAT+TGG + tig0044760:1279-1298 Msa1464940:CDS 50.0%
CGTGAAGTCCAATTCCTCCA+TGG - tig0044760:1584-1603 None:intergenic 50.0%
GACTTCACGGCCTTCGTTTA+GGG + tig0044760:1595-1614 Msa1464940:CDS 50.0%
ACTTCACGGCCTTCGTTTAG+GGG + tig0044760:1596-1615 Msa1464940:CDS 50.0%
TCCATGTGTCCCCTAAACGA+AGG - tig0044760:1608-1627 None:intergenic 50.0%
!! GGACACACGTTGACTTGCAT+TGG + tig0044760:1705-1724 Msa1464940:CDS 50.0%
GTAGCAGTGTGACCAACTCT+AGG - tig0044760:1876-1895 None:intergenic 50.0%
!! AGAGAGTGTTGACGAGGATG+TGG + tig0044760:2012-2031 Msa1464940:CDS 50.0%
TGACGAGGATGTGGAAACGA+TGG + tig0044760:2021-2040 Msa1464940:CDS 50.0%
! GTGTTTGGTGGAATGGTGGA+TGG + tig0044760:2119-2138 Msa1464940:CDS 50.0%
CCAAGTCCAGAAGGTTCAAC+AGG - tig0044760:2155-2174 None:intergenic 50.0%
CCTGTTGAACCTTCTGGACT+TGG + tig0044760:2152-2171 Msa1464940:CDS 50.0%
!! TTTGGTGGTGGCTGTGATGG+AGG + tig0044760:235-254 Msa1464940:CDS 55.0%
! GACGACACCTTGATGACACG+TGG + tig0044760:1265-1284 Msa1464940:CDS 55.0%
! ACACCTTGATGACACGTGGG+TGG + tig0044760:1269-1288 Msa1464940:CDS 55.0%
ATGCCACCCACGTGTCATCA+AGG - tig0044760:1275-1294 None:intergenic 55.0%
! GAGTGTTGCTCCACCACCTA+GGG + tig0044760:1515-1534 Msa1464940:CDS 55.0%
! AGTGTTGCTCCACCACCTAG+GGG + tig0044760:1516-1535 Msa1464940:CDS 55.0%
GGACTTCACGGCCTTCGTTT+AGG + tig0044760:1594-1613 Msa1464940:CDS 55.0%
GCCTTCGTTTAGGGGACACA+TGG + tig0044760:1604-1623 Msa1464940:CDS 55.0%
AACGTGTGTCCTGAACGTGG+CGG - tig0044760:1696-1715 None:intergenic 55.0%
GTCAACGTGTGTCCTGAACG+TGG - tig0044760:1699-1718 None:intergenic 55.0%
ACGACCAGAAGGATCTACGC+AGG - tig0044760:2090-2109 None:intergenic 55.0%
! GTGGTGGCTGTGATGGAGGT+TGG + tig0044760:239-258 Msa1464940:intron 60.0%
!! GGAGTGTTGCTCCACCACCT+AGG + tig0044760:1514-1533 Msa1464940:CDS 60.0%
CAAGCAGCATGAGCTCCCCT+AGG - tig0044760:1534-1553 None:intergenic 60.0%
CGTGCCTGCGTAGATCCTTC+TGG + tig0044760:2083-2102 Msa1464940:CDS 60.0%
GCATGAGCTCCCCTAGGTGG+TGG - tig0044760:1528-1547 None:intergenic 65.0%
GCAGCATGAGCTCCCCTAGG+TGG - tig0044760:1531-1550 None:intergenic 65.0%
! AACGTGGCGGAGGCGATGGA+TGG - tig0044760:1683-1702 None:intergenic 65.0%
GTGTGTCCTGAACGTGGCGG+AGG - tig0044760:1693-1712 None:intergenic 65.0%
! CCTGAACGTGGCGGAGGCGA+TGG - tig0044760:1687-1706 None:intergenic 70.0%
CCATCGCCTCCGCCACGTTC+AGG + tig0044760:1684-1703 Msa1464940:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0044760 gene 1 2484 1 ID=Msa1464940;Name=Msa1464940
tig0044760 mRNA 1 2484 1 ID=Msa1464940-mRNA-1;Parent=Msa1464940;Name=Msa1464940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|1|1|1|1|2|264|403
tig0044760 exon 1 256 1 ID=Msa1464940-mRNA-1:exon:24637;Parent=Msa1464940-mRNA-1
tig0044760 exon 1265 2484 1265 ID=Msa1464940-mRNA-1:exon:24638;Parent=Msa1464940-mRNA-1
tig0044760 CDS 1 256 1 ID=Msa1464940-mRNA-1:cds;Parent=Msa1464940-mRNA-1
tig0044760 CDS 1265 2220 1265 ID=Msa1464940-mRNA-1:cds;Parent=Msa1464940-mRNA-1
tig0044760 three_prime_UTR 2221 2484 2221 ID=Msa1464940-mRNA-1:three_prime_utr;Parent=Msa1464940-mRNA-1
Gene Sequence

>Msa1464940

TGGAAATCCTTATGCAAGAGAGACTTGAGTTCAACATGTGTGGATTCATTAGTCAAGTCTTGTAATAATTCCAATCATCATGTTCATCAGTTTTCATGGATGAAACTCTATAAGCAAATATATCAGATGGATTCTGTTTGTTGTCATAAATTGTCATACCCTCATGGAGATTTAGATTTCCCTAAAGCAAGAGCTTCTCACTCTCTCAACTTTGTTTCTGACTGTCTTGTCTTGTTTGGTGGTGGCTGTGATGGAGGACGACACCTTGATGACACGTGGGTGGCATATATTGGTAACGATTTCCAGAGAATATTGAAATGGAAGACAGTTCATTCAGGCATACCAAGTGGAAGATTTGGTCATACATGTGTGGAAATGGATGATTTCCTTGTTCTCTTTGGAGGCATCAATGATCATGGAAACCGTCAAAATGATACATGGATTGGAAAAGTTATACACAATGAAAACAAAGGCATTACATTTTCATGGAAAATGATAGATGTTGGGAGTGTTGCTCCACCACCTAGGGGAGCTCATGCTGCTTGTTGCATCGACGACAAGAGAATGGTAATCCATGGAGGAATTGGACTTCACGGCCTTCGTTTAGGGGACACATGGATCTTAGAATTGTCAGATAGTCATTGTTTCGGCACATGGCATGAGATTGCTATCCATCCATCGCCTCCGCCACGTTCAGGACACACGTTGACTTGCATTGGAAGAAATAGGACAATACTTTTCGGAGGTAGAGGTTTAGGTTATGAAGTGCTTCATGATGTATGGTTATTGGATACTTGCCAAGGTTACATGAGATGGATTCAAGTACTTTATGATTTACAAAACATACCAGATGGTATTTCACTTCCTAGAGTTGGTCACACTGCTACAATGGTTTTAGGAGGTAGGTTGTTAATTTATGGAGGAGAAGACTCATCAAGACATAGGAAAAATGACTTTTGGGTATTAGATATTAGTTCCATTCCTTCAACCACAGCAAGTTCAAAGAGAGTGTTGACGAGGATGTGGAAACGATGGAAATCAAATGGATATGAACCGAAGTCTAGATCGTTTCATCGTGCCTGCGTAGATCCTTCTGGTCGTTATTTGTATGTGTTTGGTGGAATGGTGGATGGTTTAGTTCAACCTGTTGAACCTTCTGGACTTGGATTTGATAAGGAGCTTTTTCTTGGGGAGCTTGTGCTTCAACTCTAA

Protein sequence

>Msa1464940

WKSLCKRDLSSTCVDSLVKSCNNSNHHVHQFSWMKLYKQIYQMDSVCCHKLSYPHGDLDFPKARASHSLNFVSDCLVLFGGGCDGGRHLDDTWVAYIGNDFQRILKWKTVHSGIPSGRFGHTCVEMDDFLVLFGGINDHGNRQNDTWIGKVIHNENKGITFSWKMIDVGSVAPPPRGAHAACCIDDKRMVIHGGIGLHGLRLGDTWILELSDSHCFGTWHEIAIHPSPPPRSGHTLTCIGRNRTILFGGRGLGYEVLHDVWLLDTCQGYMRWIQVLYDLQNIPDGISLPRVGHTATMVLGGRLLIYGGEDSSRHRKNDFWVLDISSIPSTTASSKRVLTRMWKRWKSNGYEPKSRSFHRACVDPSGRYLYVFGGMVDGLVQPVEPSGLGFDKELFLGELVLQL*