AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1226660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1226660 MtrunA17_Chr8g0344411 96.023 176 7 0 30 205 578 753 1.07e-118 353
Msa1226660 MtrunA17_Chr2g0300981 36.471 170 101 2 31 198 556 720 3.58e-24 99.4
Msa1226660 MtrunA17_Chr4g0070331 37.572 173 97 6 31 198 580 746 1.25e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1226660 AT1G72500.1 42.458 179 88 5 31 200 582 754 3.75e-31 120
Msa1226660 AT1G19110.1 40.000 170 96 3 31 198 583 748 8.46e-22 93.2

Find 45 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAAATGCTTTGTCTGTT+TGG 0.286098 8_2:-1215621 None:intergenic
GAAATCCCAAAGTTATTTCT+TGG 0.301433 8_2:+1215120 Msa1226660:CDS
AAGTGGGAGAGGTGGTAAAA+TGG 0.330282 8_2:+1215658 Msa1226660:three_prime_UTR
AAACCATCTGAAGGACTATT+GGG 0.347518 8_2:+1215213 Msa1226660:CDS
AAAACCATCTGAAGGACTAT+TGG 0.370662 8_2:+1215212 Msa1226660:CDS
TCCATCAGAGTATACTTTCA+TGG 0.371580 8_2:+1214727 Msa1226660:CDS
GTCCTCCAAGAAATAACTTT+GGG 0.375977 8_2:-1215125 None:intergenic
ACAATAACCTTATGTTCAAC+TGG 0.387095 8_2:-1215436 None:intergenic
CACACTTAGCTTCAAGGGAT+TGG 0.388864 8_2:+1215092 Msa1226660:CDS
TTTACAATCAATAATATGAT+AGG 0.395263 8_2:+1215516 Msa1226660:three_prime_UTR
TATATGTCCAGTTGAACATA+AGG 0.406409 8_2:+1215429 Msa1226660:three_prime_UTR
CAGCTTCTACTTGTTGTGGT+AGG 0.406572 8_2:+1215241 Msa1226660:CDS
AAGCTATCCTATCATATGAT+AGG 0.414112 8_2:-1215548 None:intergenic
GTTTGTTCTGTTGTCTAAAG+TGG 0.423018 8_2:+1215641 Msa1226660:three_prime_UTR
TGTTCTCAGATTCATGCTCT+TGG 0.424200 8_2:+1214244 Msa1226660:CDS
ACCTAGTCACTGCTCGTGCC+TGG 0.457687 8_2:+1214383 Msa1226660:CDS
AGCTTCTACTTGTTGTGGTA+GGG 0.458348 8_2:+1215242 Msa1226660:CDS
AGTCCTCCAAGAAATAACTT+TGG 0.461508 8_2:-1215126 None:intergenic
TGAAGCATTTCTGTTACAAA+AGG 0.468309 8_2:+1214790 Msa1226660:CDS
ATACGGCACACTTAGCTTCA+AGG 0.469413 8_2:+1215086 Msa1226660:CDS
GGTGGTCAGATGAAGAAGAT+TGG 0.471014 8_2:-1215600 None:intergenic
AGCTTATCCTATCATATGAT+AGG 0.471042 8_2:+1215541 Msa1226660:three_prime_UTR
AAGTCAAGAGCTGGAGGAGA+AGG 0.477873 8_2:+1214414 Msa1226660:CDS
ATCCCAAAGTTATTTCTTGG+AGG 0.479788 8_2:+1215123 Msa1226660:CDS
TTCCCCAATAGTCCTTCAGA+TGG 0.513937 8_2:-1215216 None:intergenic
TTTGTTCTGTTGTCTAAAGT+GGG 0.514743 8_2:+1215642 Msa1226660:three_prime_UTR
AAGGCAGCTTCTACTTGTTG+TGG 0.524207 8_2:+1215237 Msa1226660:CDS
TTTCTTGGAGGACTGAGTCA+TGG 0.526665 8_2:+1215135 Msa1226660:CDS
TAAATGCTTTGTCTGTTTGG+TGG 0.531503 8_2:-1215618 None:intergenic
ACAAAGTTGAGTGCAAACTA+TGG 0.532632 8_2:-1215328 None:intergenic
TTCTACTTGTTGTGGTAGGG+TGG 0.543772 8_2:+1215245 Msa1226660:CDS
TACGGCACACTTAGCTTCAA+GGG 0.545418 8_2:+1215087 Msa1226660:CDS
TCCATGAAAGTATACTCTGA+TGG 0.549476 8_2:-1214728 None:intergenic
ACCTCTTCAAAACAGGCATA+CGG 0.569071 8_2:+1215069 Msa1226660:intron
TCTGTTGTCTAAAGTGGGAG+AGG 0.578162 8_2:+1215647 Msa1226660:three_prime_UTR
ACCAGGCACGAGCAGTGACT+AGG 0.603982 8_2:-1214384 None:intergenic
TACTATGCAACTCATAAGCA+CGG 0.609095 8_2:+1214198 Msa1226660:CDS
AAAGAAGCAAAACCATCTGA+AGG 0.611520 8_2:+1215204 Msa1226660:CDS
TCAGATGAAGAAGATTGGAT+AGG 0.611933 8_2:-1215595 None:intergenic
ATCTGAAGGACTATTGGGGA+AGG 0.612930 8_2:+1215218 Msa1226660:CDS
GTTGTCTAAAGTGGGAGAGG+TGG 0.620538 8_2:+1215650 Msa1226660:three_prime_UTR
AGAGCATGAATCTGAGAACA+AGG 0.646135 8_2:-1214241 None:intergenic
GGAGGACTGAGTCATGGATG+TGG 0.656850 8_2:+1215141 Msa1226660:CDS
AACCATCTGAAGGACTATTG+GGG 0.680096 8_2:+1215214 Msa1226660:CDS
AGGGTGGCTGACACATGTTG+TGG 0.691615 8_2:+1215261 Msa1226660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATTTAAATACCAA+AGG - chr8_2:1214818-1214837 None:intergenic 10.0%
!! GGTATTTAAATATATAATAA+TGG + chr8_2:1214820-1214839 Msa1226660:intron 10.0%
!! ATTATATATTTAAATACCAA+AGG - chr8_2:1214818-1214837 None:intergenic 10.0%
!! GGTATTTAAATATATAATAA+TGG + chr8_2:1214820-1214839 Msa1226660:intron 10.0%
!! TTTACAATCAATAATATGAT+AGG + chr8_2:1215516-1215535 Msa1226660:three_prime_UTR 15.0%
!! TTTACAATCAATAATATGAT+AGG + chr8_2:1215516-1215535 Msa1226660:three_prime_UTR 15.0%
!!! ATGCATCTTGATATAAATTT+TGG + chr8_2:1214326-1214345 Msa1226660:intron 20.0%
!! ATTTCGTTCATTAAAACAAA+AGG + chr8_2:1214476-1214495 Msa1226660:intron 20.0%
!!! ATGCATCTTGATATAAATTT+TGG + chr8_2:1214326-1214345 Msa1226660:intron 20.0%
!! ATTTCGTTCATTAAAACAAA+AGG + chr8_2:1214476-1214495 Msa1226660:intron 20.0%
!!! TAAATTTTGGTATTTACTCC+AGG + chr8_2:1214339-1214358 Msa1226660:intron 25.0%
! GGAAACTAAAAAAGCAAAAA+TGG + chr8_2:1214497-1214516 Msa1226660:intron 25.0%
! AAGCAAAAATGGAAAATATG+TGG + chr8_2:1214508-1214527 Msa1226660:intron 25.0%
! GAATAAAAATGATGTCAAGA+AGG + chr8_2:1214763-1214782 Msa1226660:CDS 25.0%
! GATAGCTTAGTCAAAAAAAA+AGG + chr8_2:1215563-1215582 Msa1226660:three_prime_UTR 25.0%
!!! TAAATTTTGGTATTTACTCC+AGG + chr8_2:1214339-1214358 Msa1226660:intron 25.0%
! GGAAACTAAAAAAGCAAAAA+TGG + chr8_2:1214497-1214516 Msa1226660:intron 25.0%
! AAGCAAAAATGGAAAATATG+TGG + chr8_2:1214508-1214527 Msa1226660:intron 25.0%
! GAATAAAAATGATGTCAAGA+AGG + chr8_2:1214763-1214782 Msa1226660:CDS 25.0%
! GATAGCTTAGTCAAAAAAAA+AGG + chr8_2:1215563-1215582 Msa1226660:three_prime_UTR 25.0%
! CTCTTGACTTTTTAATAACC+AGG - chr8_2:1214404-1214423 None:intergenic 30.0%
GTTATTAAAAAGTCAAGAGC+TGG + chr8_2:1214405-1214424 Msa1226660:CDS 30.0%
ATTACAACTGTTTAACCACT+TGG - chr8_2:1214618-1214637 None:intergenic 30.0%
! TTTTGTAACAGAAATGCTTC+AGG - chr8_2:1214791-1214810 None:intergenic 30.0%
! TGAAGCATTTCTGTTACAAA+AGG + chr8_2:1214790-1214809 Msa1226660:CDS 30.0%
TGGAACTACTCTAATAGTTA+CGG - chr8_2:1214863-1214882 None:intergenic 30.0%
TGTGCAAAAGGGAAAAATAA+TGG - chr8_2:1214883-1214902 None:intergenic 30.0%
CTGATACATATTGTGCAAAA+GGG - chr8_2:1214894-1214913 None:intergenic 30.0%
TCTGATACATATTGTGCAAA+AGG - chr8_2:1214895-1214914 None:intergenic 30.0%
!! GAAATCCCAAAGTTATTTCT+TGG + chr8_2:1215120-1215139 Msa1226660:CDS 30.0%
TATATGTCCAGTTGAACATA+AGG + chr8_2:1215429-1215448 Msa1226660:three_prime_UTR 30.0%
ACAATAACCTTATGTTCAAC+TGG - chr8_2:1215439-1215458 None:intergenic 30.0%
AGCTTATCCTATCATATGAT+AGG + chr8_2:1215541-1215560 Msa1226660:three_prime_UTR 30.0%
AAGCTATCCTATCATATGAT+AGG - chr8_2:1215551-1215570 None:intergenic 30.0%
AACTAAATGCTTTGTCTGTT+TGG - chr8_2:1215624-1215643 None:intergenic 30.0%
! TTTGTTCTGTTGTCTAAAGT+GGG + chr8_2:1215642-1215661 Msa1226660:three_prime_UTR 30.0%
! CTCTTGACTTTTTAATAACC+AGG - chr8_2:1214404-1214423 None:intergenic 30.0%
GTTATTAAAAAGTCAAGAGC+TGG + chr8_2:1214405-1214424 Msa1226660:CDS 30.0%
ATTACAACTGTTTAACCACT+TGG - chr8_2:1214618-1214637 None:intergenic 30.0%
! TTTTGTAACAGAAATGCTTC+AGG - chr8_2:1214791-1214810 None:intergenic 30.0%
! TGAAGCATTTCTGTTACAAA+AGG + chr8_2:1214790-1214809 Msa1226660:CDS 30.0%
TGGAACTACTCTAATAGTTA+CGG - chr8_2:1214863-1214882 None:intergenic 30.0%
TGTGCAAAAGGGAAAAATAA+TGG - chr8_2:1214883-1214902 None:intergenic 30.0%
CTGATACATATTGTGCAAAA+GGG - chr8_2:1214894-1214913 None:intergenic 30.0%
TCTGATACATATTGTGCAAA+AGG - chr8_2:1214895-1214914 None:intergenic 30.0%
!! GAAATCCCAAAGTTATTTCT+TGG + chr8_2:1215120-1215139 Msa1226660:CDS 30.0%
TATATGTCCAGTTGAACATA+AGG + chr8_2:1215429-1215448 Msa1226660:three_prime_UTR 30.0%
ACAATAACCTTATGTTCAAC+TGG - chr8_2:1215439-1215458 None:intergenic 30.0%
AGCTTATCCTATCATATGAT+AGG + chr8_2:1215541-1215560 Msa1226660:three_prime_UTR 30.0%
AAGCTATCCTATCATATGAT+AGG - chr8_2:1215551-1215570 None:intergenic 30.0%
AACTAAATGCTTTGTCTGTT+TGG - chr8_2:1215624-1215643 None:intergenic 30.0%
! TTTGTTCTGTTGTCTAAAGT+GGG + chr8_2:1215642-1215661 Msa1226660:three_prime_UTR 30.0%
TACTATGCAACTCATAAGCA+CGG + chr8_2:1214198-1214217 Msa1226660:CDS 35.0%
! TATGTCTCTTTGAAAAGACC+TGG - chr8_2:1214360-1214379 None:intergenic 35.0%
ATTAAAAAGTCAAGAGCTGG+AGG + chr8_2:1214408-1214427 Msa1226660:CDS 35.0%
AGAAAGAGTTATACTCCAAG+TGG + chr8_2:1214600-1214619 Msa1226660:intron 35.0%
ATTTGGTTAGAAATGAGTGG+GGG - chr8_2:1214658-1214677 None:intergenic 35.0%
CATTTGGTTAGAAATGAGTG+GGG - chr8_2:1214659-1214678 None:intergenic 35.0%
GCATTTGGTTAGAAATGAGT+GGG - chr8_2:1214660-1214679 None:intergenic 35.0%
AGCATTTGGTTAGAAATGAG+TGG - chr8_2:1214661-1214680 None:intergenic 35.0%
TTAGAGAGCAGTTTAGCATT+TGG - chr8_2:1214675-1214694 None:intergenic 35.0%
ATGCTAAACTGCTCTCTAAT+AGG + chr8_2:1214676-1214695 Msa1226660:intron 35.0%
TCCATCAGAGTATACTTTCA+TGG + chr8_2:1214727-1214746 Msa1226660:CDS 35.0%
! TCCATGAAAGTATACTCTGA+TGG - chr8_2:1214731-1214750 None:intergenic 35.0%
!! TCTGTTACAAAAGGTACCTT+TGG + chr8_2:1214799-1214818 Msa1226660:intron 35.0%
CTACTCTAATAGTTACGGAA+GGG - chr8_2:1214858-1214877 None:intergenic 35.0%
ACTACTCTAATAGTTACGGA+AGG - chr8_2:1214859-1214878 None:intergenic 35.0%
TACACGATGAAACACTGAAA+CGG - chr8_2:1215038-1215057 None:intergenic 35.0%
!! ATCCCAAAGTTATTTCTTGG+AGG + chr8_2:1215123-1215142 Msa1226660:CDS 35.0%
GTCCTCCAAGAAATAACTTT+GGG - chr8_2:1215128-1215147 None:intergenic 35.0%
AGTCCTCCAAGAAATAACTT+TGG - chr8_2:1215129-1215148 None:intergenic 35.0%
AAAGAAGCAAAACCATCTGA+AGG + chr8_2:1215204-1215223 Msa1226660:CDS 35.0%
AAAACCATCTGAAGGACTAT+TGG + chr8_2:1215212-1215231 Msa1226660:CDS 35.0%
AAACCATCTGAAGGACTATT+GGG + chr8_2:1215213-1215232 Msa1226660:CDS 35.0%
ACAAAGTTGAGTGCAAACTA+TGG - chr8_2:1215331-1215350 None:intergenic 35.0%
TCAGATGAAGAAGATTGGAT+AGG - chr8_2:1215598-1215617 None:intergenic 35.0%
TAAATGCTTTGTCTGTTTGG+TGG - chr8_2:1215621-1215640 None:intergenic 35.0%
GTTTGTTCTGTTGTCTAAAG+TGG + chr8_2:1215641-1215660 Msa1226660:three_prime_UTR 35.0%
TACTATGCAACTCATAAGCA+CGG + chr8_2:1214198-1214217 Msa1226660:CDS 35.0%
! TATGTCTCTTTGAAAAGACC+TGG - chr8_2:1214360-1214379 None:intergenic 35.0%
ATTAAAAAGTCAAGAGCTGG+AGG + chr8_2:1214408-1214427 Msa1226660:CDS 35.0%
AGAAAGAGTTATACTCCAAG+TGG + chr8_2:1214600-1214619 Msa1226660:intron 35.0%
ATTTGGTTAGAAATGAGTGG+GGG - chr8_2:1214658-1214677 None:intergenic 35.0%
CATTTGGTTAGAAATGAGTG+GGG - chr8_2:1214659-1214678 None:intergenic 35.0%
GCATTTGGTTAGAAATGAGT+GGG - chr8_2:1214660-1214679 None:intergenic 35.0%
AGCATTTGGTTAGAAATGAG+TGG - chr8_2:1214661-1214680 None:intergenic 35.0%
TTAGAGAGCAGTTTAGCATT+TGG - chr8_2:1214675-1214694 None:intergenic 35.0%
ATGCTAAACTGCTCTCTAAT+AGG + chr8_2:1214676-1214695 Msa1226660:intron 35.0%
TCCATCAGAGTATACTTTCA+TGG + chr8_2:1214727-1214746 Msa1226660:CDS 35.0%
! TCCATGAAAGTATACTCTGA+TGG - chr8_2:1214731-1214750 None:intergenic 35.0%
!! TCTGTTACAAAAGGTACCTT+TGG + chr8_2:1214799-1214818 Msa1226660:intron 35.0%
CTACTCTAATAGTTACGGAA+GGG - chr8_2:1214858-1214877 None:intergenic 35.0%
ACTACTCTAATAGTTACGGA+AGG - chr8_2:1214859-1214878 None:intergenic 35.0%
TACACGATGAAACACTGAAA+CGG - chr8_2:1215038-1215057 None:intergenic 35.0%
!! ATCCCAAAGTTATTTCTTGG+AGG + chr8_2:1215123-1215142 Msa1226660:CDS 35.0%
GTCCTCCAAGAAATAACTTT+GGG - chr8_2:1215128-1215147 None:intergenic 35.0%
AGTCCTCCAAGAAATAACTT+TGG - chr8_2:1215129-1215148 None:intergenic 35.0%
AAAGAAGCAAAACCATCTGA+AGG + chr8_2:1215204-1215223 Msa1226660:CDS 35.0%
AAAACCATCTGAAGGACTAT+TGG + chr8_2:1215212-1215231 Msa1226660:CDS 35.0%
AAACCATCTGAAGGACTATT+GGG + chr8_2:1215213-1215232 Msa1226660:CDS 35.0%
ACAAAGTTGAGTGCAAACTA+TGG - chr8_2:1215331-1215350 None:intergenic 35.0%
TCAGATGAAGAAGATTGGAT+AGG - chr8_2:1215598-1215617 None:intergenic 35.0%
TAAATGCTTTGTCTGTTTGG+TGG - chr8_2:1215621-1215640 None:intergenic 35.0%
GTTTGTTCTGTTGTCTAAAG+TGG + chr8_2:1215641-1215660 Msa1226660:three_prime_UTR 35.0%
AGAGCATGAATCTGAGAACA+AGG - chr8_2:1214244-1214263 None:intergenic 40.0%
TGTTCTCAGATTCATGCTCT+TGG + chr8_2:1214244-1214263 Msa1226660:CDS 40.0%
TACCTACACCTCTTCAAAAC+AGG + chr8_2:1215062-1215081 Msa1226660:intron 40.0%
ACCTCTTCAAAACAGGCATA+CGG + chr8_2:1215069-1215088 Msa1226660:intron 40.0%
! TTTGCTTCTTTTGTTGCTGG+TGG - chr8_2:1215195-1215214 None:intergenic 40.0%
! GGTTTTGCTTCTTTTGTTGC+TGG - chr8_2:1215198-1215217 None:intergenic 40.0%
AACCATCTGAAGGACTATTG+GGG + chr8_2:1215214-1215233 Msa1226660:CDS 40.0%
!! AGCTTCTACTTGTTGTGGTA+GGG + chr8_2:1215242-1215261 Msa1226660:CDS 40.0%
AGAGCATGAATCTGAGAACA+AGG - chr8_2:1214244-1214263 None:intergenic 40.0%
TGTTCTCAGATTCATGCTCT+TGG + chr8_2:1214244-1214263 Msa1226660:CDS 40.0%
TACCTACACCTCTTCAAAAC+AGG + chr8_2:1215062-1215081 Msa1226660:intron 40.0%
ACCTCTTCAAAACAGGCATA+CGG + chr8_2:1215069-1215088 Msa1226660:intron 40.0%
! TTTGCTTCTTTTGTTGCTGG+TGG - chr8_2:1215195-1215214 None:intergenic 40.0%
! GGTTTTGCTTCTTTTGTTGC+TGG - chr8_2:1215198-1215217 None:intergenic 40.0%
AACCATCTGAAGGACTATTG+GGG + chr8_2:1215214-1215233 Msa1226660:CDS 40.0%
!! AGCTTCTACTTGTTGTGGTA+GGG + chr8_2:1215242-1215261 Msa1226660:CDS 40.0%
CTGTGTCCGTTACACATACA+CGG + chr8_2:1214921-1214940 Msa1226660:intron 45.0%
TCAGTGCCGTGTATGTGTAA+CGG - chr8_2:1214930-1214949 None:intergenic 45.0%
!!! TGCCTGTTTTGAAGAGGTGT+AGG - chr8_2:1215067-1215086 None:intergenic 45.0%
ATACGGCACACTTAGCTTCA+AGG + chr8_2:1215086-1215105 Msa1226660:CDS 45.0%
TACGGCACACTTAGCTTCAA+GGG + chr8_2:1215087-1215106 Msa1226660:CDS 45.0%
CACACTTAGCTTCAAGGGAT+TGG + chr8_2:1215092-1215111 Msa1226660:CDS 45.0%
TTTCTTGGAGGACTGAGTCA+TGG + chr8_2:1215135-1215154 Msa1226660:CDS 45.0%
TTCCCCAATAGTCCTTCAGA+TGG - chr8_2:1215219-1215238 None:intergenic 45.0%
ATCTGAAGGACTATTGGGGA+AGG + chr8_2:1215218-1215237 Msa1226660:CDS 45.0%
! AAGGCAGCTTCTACTTGTTG+TGG + chr8_2:1215237-1215256 Msa1226660:CDS 45.0%
!! CAGCTTCTACTTGTTGTGGT+AGG + chr8_2:1215241-1215260 Msa1226660:CDS 45.0%
!! TTCTACTTGTTGTGGTAGGG+TGG + chr8_2:1215245-1215264 Msa1226660:CDS 45.0%
GGTGGTCAGATGAAGAAGAT+TGG - chr8_2:1215603-1215622 None:intergenic 45.0%
! TCTGTTGTCTAAAGTGGGAG+AGG + chr8_2:1215647-1215666 Msa1226660:three_prime_UTR 45.0%
AAGTGGGAGAGGTGGTAAAA+TGG + chr8_2:1215658-1215677 Msa1226660:three_prime_UTR 45.0%
CTGTGTCCGTTACACATACA+CGG + chr8_2:1214921-1214940 Msa1226660:intron 45.0%
TCAGTGCCGTGTATGTGTAA+CGG - chr8_2:1214930-1214949 None:intergenic 45.0%
!!! TGCCTGTTTTGAAGAGGTGT+AGG - chr8_2:1215067-1215086 None:intergenic 45.0%
ATACGGCACACTTAGCTTCA+AGG + chr8_2:1215086-1215105 Msa1226660:CDS 45.0%
TACGGCACACTTAGCTTCAA+GGG + chr8_2:1215087-1215106 Msa1226660:CDS 45.0%
CACACTTAGCTTCAAGGGAT+TGG + chr8_2:1215092-1215111 Msa1226660:CDS 45.0%
TTTCTTGGAGGACTGAGTCA+TGG + chr8_2:1215135-1215154 Msa1226660:CDS 45.0%
TTCCCCAATAGTCCTTCAGA+TGG - chr8_2:1215219-1215238 None:intergenic 45.0%
ATCTGAAGGACTATTGGGGA+AGG + chr8_2:1215218-1215237 Msa1226660:CDS 45.0%
! AAGGCAGCTTCTACTTGTTG+TGG + chr8_2:1215237-1215256 Msa1226660:CDS 45.0%
!! CAGCTTCTACTTGTTGTGGT+AGG + chr8_2:1215241-1215260 Msa1226660:CDS 45.0%
!! TTCTACTTGTTGTGGTAGGG+TGG + chr8_2:1215245-1215264 Msa1226660:CDS 45.0%
GGTGGTCAGATGAAGAAGAT+TGG - chr8_2:1215603-1215622 None:intergenic 45.0%
! TCTGTTGTCTAAAGTGGGAG+AGG + chr8_2:1215647-1215666 Msa1226660:three_prime_UTR 45.0%
AAGTGGGAGAGGTGGTAAAA+TGG + chr8_2:1215658-1215677 Msa1226660:three_prime_UTR 45.0%
AAGTCAAGAGCTGGAGGAGA+AGG + chr8_2:1214414-1214433 Msa1226660:CDS 50.0%
!! CGTGTATGTGTAACGGACAC+AGG - chr8_2:1214923-1214942 None:intergenic 50.0%
! CTTTGTGTCACTGTCGTGTC+TGG + chr8_2:1215009-1215028 Msa1226660:intron 50.0%
!!! GCCGTATGCCTGTTTTGAAG+AGG - chr8_2:1215073-1215092 None:intergenic 50.0%
! GTTGTCTAAAGTGGGAGAGG+TGG + chr8_2:1215650-1215669 Msa1226660:three_prime_UTR 50.0%
AAGTCAAGAGCTGGAGGAGA+AGG + chr8_2:1214414-1214433 Msa1226660:CDS 50.0%
!! CGTGTATGTGTAACGGACAC+AGG - chr8_2:1214923-1214942 None:intergenic 50.0%
! CTTTGTGTCACTGTCGTGTC+TGG + chr8_2:1215009-1215028 Msa1226660:intron 50.0%
!!! GCCGTATGCCTGTTTTGAAG+AGG - chr8_2:1215073-1215092 None:intergenic 50.0%
! GTTGTCTAAAGTGGGAGAGG+TGG + chr8_2:1215650-1215669 Msa1226660:three_prime_UTR 50.0%
GGAGGACTGAGTCATGGATG+TGG + chr8_2:1215141-1215160 Msa1226660:CDS 55.0%
AGGGTGGCTGACACATGTTG+TGG + chr8_2:1215261-1215280 Msa1226660:CDS 55.0%
GGAGGACTGAGTCATGGATG+TGG + chr8_2:1215141-1215160 Msa1226660:CDS 55.0%
AGGGTGGCTGACACATGTTG+TGG + chr8_2:1215261-1215280 Msa1226660:CDS 55.0%
ACCTAGTCACTGCTCGTGCC+TGG + chr8_2:1214383-1214402 Msa1226660:CDS 60.0%
ACCAGGCACGAGCAGTGACT+AGG - chr8_2:1214387-1214406 None:intergenic 60.0%
ACCTAGTCACTGCTCGTGCC+TGG + chr8_2:1214383-1214402 Msa1226660:CDS 60.0%
ACCAGGCACGAGCAGTGACT+AGG - chr8_2:1214387-1214406 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 1214183 1215686 1214183 ID=Msa1226660;Name=Msa1226660
chr8_2 mRNA 1214183 1215686 1214183 ID=Msa1226660-mRNA-1;Parent=Msa1226660;Name=Msa1226660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.66|0.5|1|1|1|4|264|205
chr8_2 exon 1214183 1214272 1214183 ID=Msa1226660-mRNA-1:exon:277;Parent=Msa1226660-mRNA-1
chr8_2 exon 1214361 1214435 1214361 ID=Msa1226660-mRNA-1:exon:278;Parent=Msa1226660-mRNA-1
chr8_2 exon 1214698 1214811 1214698 ID=Msa1226660-mRNA-1:exon:279;Parent=Msa1226660-mRNA-1
chr8_2 exon 1215084 1215686 1215084 ID=Msa1226660-mRNA-1:exon:280;Parent=Msa1226660-mRNA-1
chr8_2 CDS 1214183 1214272 1214183 ID=Msa1226660-mRNA-1:cds;Parent=Msa1226660-mRNA-1
chr8_2 CDS 1214361 1214435 1214361 ID=Msa1226660-mRNA-1:cds;Parent=Msa1226660-mRNA-1
chr8_2 CDS 1214698 1214811 1214698 ID=Msa1226660-mRNA-1:cds;Parent=Msa1226660-mRNA-1
chr8_2 CDS 1215084 1215422 1215084 ID=Msa1226660-mRNA-1:cds;Parent=Msa1226660-mRNA-1
chr8_2 three_prime_UTR 1215423 1215686 1215423 ID=Msa1226660-mRNA-1:three_prime_utr;Parent=Msa1226660-mRNA-1
Gene Sequence

>Msa1226660

ATGTTGACTGCATATTACTATGCAACTCATAAGCACGGCAGCTCTTACACGAGTATCACCTTGTTCTCAGATTCATGCTCTTGGCTATTTGTCTTTTCAAAGAGACATATTGACCTAGTCACTGCTCGTGCCTGGTTATTAAAAAGTCAAGAGCTGGAGGAGAAGGTTTCTAAAATGAGCATTCAAAATAACGTTCCATCAGAGTATACTTTCATGGAGATGATTCTTGTGAATAAAAATGATGTCAAGAAGGCACCTGAAGCATTTCTGTTACAAAAGGCATACGGCACACTTAGCTTCAAGGGATTGGAAGTTGAAATCCCAAAGTTATTTCTTGGAGGACTGAGTCATGGATGTGGTGACTTGAAAGCAACTGCTGAGAACATTCCACCAGCAACAAAAGAAGCAAAACCATCTGAAGGACTATTGGGGAAGGCAGCTTCTACTTGTTGTGGTAGGGTGGCTGACACATGTTGTGGCATGTGTTTGCTAAAGACATGCTCTTTTGTGAATGATCAATGCACCATAGTTTGCACTCAACTTTGTGCAGCATTAGCTTGTTTTGAGTTAATTAAATGCTGTATTGAGCTCTGTGATTGTGAGTGTGATTGCTTGTAG

Protein sequence

>Msa1226660

MLTAYYYATHKHGSSYTSITLFSDSCSWLFVFSKRHIDLVTARAWLLKSQELEEKVSKMSIQNNVPSEYTFMEMILVNKNDVKKAPEAFLLQKAYGTLSFKGLEVEIPKLFLGGLSHGCGDLKATAENIPPATKEAKPSEGLLGKAASTCCGRVADTCCGMCLLKTCSFVNDQCTIVCTQLCAALACFELIKCCIELCDCECDCL*