Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358280 | XP_013453403.1 | 79.938 | 643 | 65 | 4 | 1 | 601 | 1 | 621 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358280 | A0A072UCU8 | 79.938 | 643 | 65 | 4 | 1 | 601 | 1 | 621 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1358280 | 0.800167 | 1.636182e-48 | -8.615850e-47 |
| Msa0017510 | Msa1358280 | 0.826580 | 2.509999e-54 | -8.615850e-47 |
| Msa0110970 | Msa1358280 | 0.836592 | 8.548336e-57 | -8.615850e-47 |
| Msa1358280 | Msa1374550 | 0.832136 | 1.122824e-55 | -8.615850e-47 |
| Msa1358280 | Msa1392750 | 0.911892 | 3.632275e-83 | -8.615850e-47 |
| Msa1358280 | Msa1451160 | 0.800197 | 1.613345e-48 | -8.615850e-47 |
| Msa0626510 | Msa1358280 | 0.803490 | 3.400426e-49 | -8.615850e-47 |
| Msa0738040 | Msa1358280 | 0.809405 | 1.923555e-50 | -8.615850e-47 |
| Msa0785210 | Msa1358280 | 0.812634 | 3.841474e-51 | -8.615850e-47 |
| Msa0157290 | Msa1358280 | 0.827080 | 1.905821e-54 | -8.615850e-47 |
| Msa0197420 | Msa1358280 | 0.809016 | 2.329782e-50 | -8.615850e-47 |
| Msa0197930 | Msa1358280 | 0.801140 | 1.036344e-48 | -8.615850e-47 |
| Msa1303250 | Msa1358280 | 0.805558 | 1.259445e-49 | -8.615850e-47 |
| Msa0392490 | Msa1358280 | 0.806919 | 6.510955e-50 | -8.615850e-47 |
| Msa0410500 | Msa1358280 | 0.812766 | 3.594455e-51 | -8.615850e-47 |
| Msa0475790 | Msa1358280 | 0.803898 | 2.798079e-49 | -8.615850e-47 |
| Msa0277180 | Msa1358280 | 0.801661 | 8.105408e-49 | -8.615850e-47 |
| Msa0487630 | Msa1358280 | 0.813908 | 2.017256e-51 | -8.615850e-47 |
| Msa0574890 | Msa1358280 | 0.819384 | 1.194504e-52 | -8.615850e-47 |
| Msa0843220 | Msa1358280 | 0.805412 | 1.351567e-49 | -8.615850e-47 |
| Msa0880140 | Msa1358280 | 0.823772 | 1.156883e-53 | -8.615850e-47 |
| Msa0930780 | Msa1358280 | 0.813160 | 2.945257e-51 | -8.615850e-47 |
| Msa0936410 | Msa1358280 | 0.817283 | 3.572704e-52 | -8.615850e-47 |
| Msa0973250 | Msa1358280 | 0.801691 | 7.989998e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358280 | MtrunA17_Chr5g0397401 | 79.938 | 643 | 65 | 4 | 1 | 601 | 1 | 621 | 0.0 | 919 |
| Msa1358280 | MtrunA17_Chr8g0386851 | 52.314 | 497 | 171 | 9 | 166 | 601 | 238 | 729 | 1.52e-144 | 436 |
| Msa1358280 | MtrunA17_Chr8g0386851 | 41.606 | 274 | 121 | 10 | 1 | 245 | 1 | 264 | 2.57e-30 | 126 |
| Msa1358280 | MtrunA17_Chr4g0032351 | 31.250 | 368 | 196 | 15 | 251 | 601 | 549 | 876 | 3.84e-28 | 120 |
| Msa1358280 | MtrunA17_Chr2g0328721 | 48.062 | 129 | 57 | 5 | 417 | 540 | 754 | 877 | 1.29e-24 | 109 |
| Msa1358280 | MtrunA17_Chr1g0186181 | 28.446 | 341 | 178 | 11 | 248 | 532 | 264 | 594 | 5.73e-24 | 106 |
| Msa1358280 | MtrunA17_Chr7g0240931 | 29.630 | 297 | 168 | 12 | 251 | 531 | 530 | 801 | 3.22e-23 | 104 |
| Msa1358280 | MtrunA17_Chr4g0008861 | 28.523 | 298 | 172 | 10 | 247 | 531 | 607 | 876 | 1.43e-21 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358280 | AT4G11450.1 | 34.040 | 708 | 320 | 22 | 16 | 601 | 12 | 694 | 1.38e-80 | 268 |
| Msa1358280 | AT1G63520.1 | 32.564 | 390 | 192 | 11 | 243 | 601 | 179 | 528 | 2.28e-46 | 171 |
| Msa1358280 | AT5G59020.1 | 29.810 | 369 | 195 | 18 | 251 | 601 | 458 | 780 | 4.82e-24 | 107 |
| Msa1358280 | AT2G29510.1 | 27.027 | 370 | 196 | 13 | 251 | 601 | 525 | 839 | 2.99e-21 | 99.0 |
| Msa1358280 | AT1G04490.9 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT1G04490.5 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT1G04490.6 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT1G04490.3 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT1G04490.7 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT1G04490.2 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT1G04490.1 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT1G04490.8 | 34.184 | 196 | 100 | 8 | 350 | 532 | 210 | 389 | 5.10e-21 | 96.3 |
| Msa1358280 | AT2G33360.2 | 36.782 | 174 | 88 | 6 | 375 | 535 | 270 | 434 | 2.25e-20 | 94.7 |
| Msa1358280 | AT2G33360.1 | 36.782 | 174 | 88 | 6 | 375 | 535 | 425 | 589 | 3.67e-20 | 95.1 |
| Msa1358280 | AT5G01030.3 | 39.655 | 116 | 61 | 2 | 416 | 531 | 612 | 718 | 9.06e-20 | 94.0 |
| Msa1358280 | AT5G01030.1 | 39.655 | 116 | 61 | 2 | 416 | 531 | 612 | 718 | 9.06e-20 | 94.0 |
| Msa1358280 | AT5G01030.2 | 39.655 | 116 | 61 | 2 | 416 | 531 | 612 | 718 | 9.06e-20 | 94.0 |
| Msa1358280 | AT2G37930.1 | 33.871 | 124 | 68 | 3 | 410 | 530 | 388 | 500 | 1.28e-15 | 80.5 |
| Msa1358280 | AT2G37930.3 | 33.871 | 124 | 68 | 3 | 410 | 530 | 416 | 528 | 1.39e-15 | 80.5 |
| Msa1358280 | AT2G37930.4 | 33.871 | 124 | 68 | 3 | 410 | 530 | 416 | 528 | 1.39e-15 | 80.5 |
| Msa1358280 | AT1G04490.4 | 34.437 | 151 | 72 | 7 | 350 | 487 | 210 | 346 | 7.01e-14 | 73.9 |
Find 126 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATCTCATTACAATATT+TGG | 0.129685 | tig0016220:-478662 | None:intergenic |
| TTCACTTCTTACCAAATTTC+AGG | 0.167787 | tig0016220:-478421 | None:intergenic |
| GAATTAGAAGATGGAGTATT+TGG | 0.195876 | tig0016220:+476862 | Msa1358280:CDS |
| GTTAATGATTCTCTTGTAAT+TGG | 0.204795 | tig0016220:+476318 | Msa1358280:CDS |
| GAGTAGGTAATGCTTTAAAT+TGG | 0.219018 | tig0016220:+476716 | Msa1358280:CDS |
| ATTTGTCAATAGAGAAATTA+AGG | 0.231675 | tig0016220:+476567 | Msa1358280:CDS |
| TGTTGGTAGGACCTGAAATT+TGG | 0.234521 | tig0016220:+478410 | Msa1358280:three_prime_UTR |
| TTCAAAGATTAGAAGTAATA+AGG | 0.259001 | tig0016220:+476296 | Msa1358280:CDS |
| TTTACCTTAAACTCAAAATA+AGG | 0.270888 | tig0016220:-476658 | None:intergenic |
| GAGGTTGCGACTGTGGTGGC+TGG | 0.277543 | tig0016220:+477223 | Msa1358280:CDS |
| CAATCACTTTCTGCTGGATA+TGG | 0.291670 | tig0016220:-476387 | None:intergenic |
| TCTAGTTTATGAGATCTAAA+TGG | 0.292871 | tig0016220:-475922 | None:intergenic |
| TTCTTGTTCCTGTGCTTGTA+TGG | 0.323518 | tig0016220:+476179 | Msa1358280:CDS |
| ATTGAATTGTGCATAAATTC+AGG | 0.325515 | tig0016220:+476225 | Msa1358280:CDS |
| TTTGGTGTTACAAATTATCT+TGG | 0.330407 | tig0016220:-478644 | None:intergenic |
| ACCTTCTTCAGTAATATCTA+AGG | 0.332298 | tig0016220:+476125 | Msa1358280:CDS |
| GCACTGTATATGTTCAAATA+AGG | 0.333451 | tig0016220:-478560 | None:intergenic |
| ACCAACAATTGCATACAATA+TGG | 0.339112 | tig0016220:-478394 | None:intergenic |
| ACCCGCCCGATAGGAGAAAA+AGG | 0.340515 | tig0016220:-478279 | None:intergenic |
| ATGAGATGGAAGAACAGAAT+TGG | 0.341418 | tig0016220:-475806 | None:intergenic |
| TTTAGATCTCATAAACTAGA+AGG | 0.341549 | tig0016220:+475925 | Msa1358280:CDS |
| AAGGAGAAAGCATGTAGAAA+TGG | 0.343187 | tig0016220:+475850 | Msa1358280:CDS |
| TGGAGTATTTGGAAACTATA+TGG | 0.345752 | tig0016220:+476873 | Msa1358280:CDS |
| TGAAGAGACATCACTTGGTT+TGG | 0.373109 | tig0016220:-477097 | None:intergenic |
| ACTAGTGACAACTCTTATTC+TGG | 0.379125 | tig0016220:+476045 | Msa1358280:CDS |
| TTTGCAACAAAGGCATGTTC+AGG | 0.382252 | tig0016220:-476685 | None:intergenic |
| AAGCTTTCTCTCTTATGAAA+TGG | 0.395331 | tig0016220:-477033 | None:intergenic |
| AGGAGAAAGCATGTAGAAAT+GGG | 0.398086 | tig0016220:+475851 | Msa1358280:CDS |
| GGTAGAGGTGCCATGCAAAA+TGG | 0.403175 | tig0016220:-478085 | None:intergenic |
| AGTAGGTAATGCTTTAAATT+GGG | 0.403955 | tig0016220:+476717 | Msa1358280:CDS |
| TAGTTCAAATCAGAAGAAAA+TGG | 0.416816 | tig0016220:+475981 | Msa1358280:CDS |
| TCTAGTATAGTAGAAGTAAC+AGG | 0.420129 | tig0016220:+476264 | Msa1358280:CDS |
| CTGATTTGAACTATGACAAA+TGG | 0.420784 | tig0016220:-475971 | None:intergenic |
| GGACCATTGCTTTCAGCACT+TGG | 0.422219 | tig0016220:-477168 | None:intergenic |
| TATTGTAATGAGATAATAAG+AGG | 0.423587 | tig0016220:+478667 | Msa1358280:three_prime_UTR |
| CTTCTTCCTTTCATGAATTG+TGG | 0.423987 | tig0016220:-476004 | None:intergenic |
| AAACAATAGCAGCACTTTCA+AGG | 0.433528 | tig0016220:-477002 | None:intergenic |
| TGGAGAAAATGTGGAGTATC+TGG | 0.438698 | tig0016220:+478612 | Msa1358280:three_prime_UTR |
| CGACTGTGGTGGCTGGGACA+TGG | 0.444536 | tig0016220:+477230 | Msa1358280:CDS |
| AGCGAAGAATAATGCAGGCT+TGG | 0.447721 | tig0016220:+476768 | Msa1358280:CDS |
| GGCAAACCATGGTTTCCAAT+TGG | 0.448117 | tig0016220:-477147 | None:intergenic |
| ATTATTGATGGGACAAGAGT+TGG | 0.452032 | tig0016220:+475750 | None:intergenic |
| ATGCAAAATGGCGACGCAAA+TGG | 0.453647 | tig0016220:-478073 | None:intergenic |
| TTGGTGTTACAAATTATCTT+GGG | 0.454142 | tig0016220:-478643 | None:intergenic |
| CTTCAGCGCTAAGGAAGAAC+AGG | 0.454329 | tig0016220:+478107 | Msa1358280:CDS |
| TCCATATTGTATGCAATTGT+TGG | 0.457862 | tig0016220:+478393 | Msa1358280:three_prime_UTR |
| GGATTGCCTAAAAGAATAAG+AGG | 0.461921 | tig0016220:-477258 | None:intergenic |
| GTAAATGTGGTATTACCAAT+TGG | 0.463627 | tig0016220:+477132 | Msa1358280:CDS |
| TTCAACTAATGTCATGCAAA+AGG | 0.463878 | tig0016220:-477995 | None:intergenic |
| TGAGATGGAAGAACAGAATT+GGG | 0.465267 | tig0016220:-475805 | None:intergenic |
| AGATTACCATGCAAATGAAC+AGG | 0.469037 | tig0016220:-476610 | None:intergenic |
| AAAGGTAGGAGCACTTTCTT+CGG | 0.471674 | tig0016220:-477977 | None:intergenic |
| GCGAAGAATAATGCAGGCTT+GGG | 0.473494 | tig0016220:+476769 | Msa1358280:CDS |
| TCCTTAGATATTACTGAAGA+AGG | 0.476269 | tig0016220:-476126 | None:intergenic |
| TGGAGTTGCAGCCTTCAATC+AGG | 0.477604 | tig0016220:-478343 | None:intergenic |
| TTATGTTCTGAATTAGAAGA+TGG | 0.478333 | tig0016220:+476853 | Msa1358280:CDS |
| CTGTTCTTCCTTAGCGCTGA+AGG | 0.479011 | tig0016220:-478106 | None:intergenic |
| GAATGAATAGTCAGCTCTCA+TGG | 0.479134 | tig0016220:+478592 | Msa1358280:three_prime_UTR |
| TGGATATGGTTGGTGAGAAT+TGG | 0.482415 | tig0016220:-476373 | None:intergenic |
| CGCTCACCTGTTCATTTGCA+TGG | 0.482795 | tig0016220:+476604 | Msa1358280:CDS |
| GATGAACAATCACTTTCTGC+TGG | 0.484536 | tig0016220:-476393 | None:intergenic |
| TTCCTTAGCGCTGAAGGTAG+AGG | 0.484557 | tig0016220:-478100 | None:intergenic |
| TTCCAACATAGCCTGATTGA+AGG | 0.485429 | tig0016220:+478332 | Msa1358280:three_prime_UTR |
| GGATGAAATTCACATCCATA+TGG | 0.486294 | tig0016220:+478452 | Msa1358280:three_prime_UTR |
| CATCCATATGGACTCCTAGC+TGG | 0.488531 | tig0016220:+478464 | Msa1358280:three_prime_UTR |
| TCTTTCTTATGACTCATAGC+TGG | 0.493201 | tig0016220:-478505 | None:intergenic |
| TTGCCAGCTAGGAGTCCATA+TGG | 0.494038 | tig0016220:-478467 | None:intergenic |
| TGACAATGATTCATCATCAA+TGG | 0.497989 | tig0016220:+476804 | Msa1358280:CDS |
| AAACTGTTTGAATGTGAAGA+AGG | 0.511668 | tig0016220:+475831 | Msa1358280:CDS |
| TTGCATGACATTAGTTGAAG+AGG | 0.513032 | tig0016220:+477999 | Msa1358280:CDS |
| ATGCCTTTGTTGCAAAGACA+TGG | 0.516018 | tig0016220:+476692 | Msa1358280:CDS |
| AGGTTGCGACTGTGGTGGCT+GGG | 0.520329 | tig0016220:+477224 | Msa1358280:CDS |
| TTGCAACAAAGGCATGTTCA+GGG | 0.525799 | tig0016220:-476684 | None:intergenic |
| TCGTGAAGATCGCCCTCTTG+TGG | 0.528877 | tig0016220:+477293 | Msa1358280:CDS |
| CAGTCATAACAGAGGAGAAG+AGG | 0.532964 | tig0016220:+478205 | Msa1358280:CDS |
| CACCTCTACCTTCAGCGCTA+AGG | 0.536910 | tig0016220:+478098 | Msa1358280:CDS |
| TATTGTATGCAATTGTTGGT+AGG | 0.537280 | tig0016220:+478397 | Msa1358280:three_prime_UTR |
| ATACAATATGGACTCATAGC+TGG | 0.537713 | tig0016220:-478382 | None:intergenic |
| CTTCATCGTTACTTGATCGA+TGG | 0.538533 | tig0016220:+477190 | Msa1358280:CDS |
| ATTGATGTGAATTGCCAGCT+AGG | 0.539474 | tig0016220:-478478 | None:intergenic |
| CACTTTCTGCTGGATATGGT+TGG | 0.544380 | tig0016220:-476383 | None:intergenic |
| TCTTCACGAAATTGAACACT+AGG | 0.545067 | tig0016220:-477279 | None:intergenic |
| GCCTAAAAGAATAAGAGGGC+AGG | 0.547406 | tig0016220:-477253 | None:intergenic |
| GAAAGCTTGAAATACAAAAG+AGG | 0.552857 | tig0016220:+477048 | Msa1358280:CDS |
| AGCCTTCAATCAGGCTATGT+TGG | 0.557210 | tig0016220:-478334 | None:intergenic |
| CATGGTGGAGGTTGCGACTG+TGG | 0.566215 | tig0016220:+477216 | Msa1358280:CDS |
| GTATTACCAATTGGAAACCA+TGG | 0.570636 | tig0016220:+477141 | Msa1358280:CDS |
| CTAAATGGAAGAATCTTGCA+TGG | 0.574109 | tig0016220:-475907 | None:intergenic |
| TTAGATCTCATAAACTAGAA+GGG | 0.574614 | tig0016220:+475926 | Msa1358280:CDS |
| ACTAATGTCATGCAAAAGGT+AGG | 0.574689 | tig0016220:-477991 | None:intergenic |
| CAGCTCTCATGGAGAAAATG+TGG | 0.575275 | tig0016220:+478603 | Msa1358280:three_prime_UTR |
| ATTAGAGCGAAGAATAATGC+AGG | 0.577832 | tig0016220:+476763 | Msa1358280:CDS |
| TGTGGAGAAATATCAACCAC+TGG | 0.578630 | tig0016220:+477311 | Msa1358280:CDS |
| GGTTGATATTTCTCCACAAG+AGG | 0.580921 | tig0016220:-477306 | None:intergenic |
| AGAAGATAGAAATTTCAAGT+AGG | 0.583123 | tig0016220:+476022 | Msa1358280:CDS |
| GCACAGGAACAAGAAACAGA+TGG | 0.584959 | tig0016220:-476171 | None:intergenic |
| AAGAACTAGAGCATCTTCTA+CGG | 0.584988 | tig0016220:-478537 | None:intergenic |
| AAATGGCCACAATTCATGAA+AGG | 0.585694 | tig0016220:+475998 | Msa1358280:CDS |
| ACACTTCATACCCGCCCGAT+AGG | 0.587731 | tig0016220:-478288 | None:intergenic |
| AAAAGGCGGGTTCAGCATAG+AGG | 0.592188 | tig0016220:-478262 | None:intergenic |
| GCTGTGTTCCATACAAGCAC+AGG | 0.592937 | tig0016220:-476187 | None:intergenic |
| ATTGTAATGAGATAATAAGA+GGG | 0.593877 | tig0016220:+478668 | Msa1358280:three_prime_UTR |
| ACTAGTGAAGAGACATCACT+TGG | 0.595326 | tig0016220:-477102 | None:intergenic |
| TTGTGTGGTTCAGATGATGA+AGG | 0.597591 | tig0016220:+476084 | Msa1358280:CDS |
| GTTGCAAAGACATGGAGAGT+AGG | 0.601872 | tig0016220:+476700 | Msa1358280:CDS |
| CATCGATCAAGTAACGATGA+AGG | 0.603033 | tig0016220:-477189 | None:intergenic |
| AGATGATGAAGGTTCTGTTG+AGG | 0.604425 | tig0016220:+476095 | Msa1358280:CDS |
| TTTCAGCACTTGGCAAACCA+TGG | 0.608452 | tig0016220:-477158 | None:intergenic |
| TTACTTGATCGATGGAAACA+TGG | 0.608456 | tig0016220:+477198 | Msa1358280:CDS |
| TCTCCATGTCTTTGCAACAA+AGG | 0.610158 | tig0016220:-476695 | None:intergenic |
| TGCAACAAAGGCATGTTCAG+GGG | 0.610690 | tig0016220:-476683 | None:intergenic |
| ACTAGTAGAGCAAGTAAATG+TGG | 0.623840 | tig0016220:+477119 | Msa1358280:CDS |
| GATTGCCTAAAAGAATAAGA+GGG | 0.636194 | tig0016220:-477257 | None:intergenic |
| GTTGATATTTCTCCACAAGA+GGG | 0.637606 | tig0016220:-477305 | None:intergenic |
| GACAGTGTCTAATATTCACA+AGG | 0.640826 | tig0016220:+478227 | Msa1358280:CDS |
| GGCTGAGAGAAAAGTTCCAG+TGG | 0.651763 | tig0016220:-477327 | None:intergenic |
| TAGAAATGGGAAATTCAAAG+AGG | 0.661488 | tig0016220:+475864 | Msa1358280:CDS |
| GGTAAGAAGTGAACATGGTG+AGG | 0.674527 | tig0016220:+478431 | Msa1358280:three_prime_UTR |
| GGTGGAGGTTGCGACTGTGG+TGG | 0.681780 | tig0016220:+477219 | Msa1358280:CDS |
| GATCGATGGAAACATGGTGG+AGG | 0.686983 | tig0016220:+477204 | Msa1358280:CDS |
| CTTGATCGATGGAAACATGG+TGG | 0.691146 | tig0016220:+477201 | Msa1358280:CDS |
| CATCAAATCAGTCATAACAG+AGG | 0.691271 | tig0016220:+478197 | Msa1358280:CDS |
| TTGCCAAGTGCTGAAAGCAA+TGG | 0.693247 | tig0016220:+477165 | Msa1358280:CDS |
| ACAGTGTCTAATATTCACAA+GGG | 0.748410 | tig0016220:+478228 | Msa1358280:CDS |
| AATTTGGTAAGAAGTGAACA+TGG | 0.753223 | tig0016220:+478426 | Msa1358280:three_prime_UTR |
| AGAAAATGTGGAGTATCTGG+TGG | 0.762271 | tig0016220:+478615 | Msa1358280:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAAAAAACAATTAAAG+AGG | - | tig0016220:477921-477940 | None:intergenic | 15.0% |
| !!! | ACTTACATTTTATCTATTTT+TGG | + | tig0016220:477943-477962 | Msa1358280:intron | 15.0% |
| !! | TATTATCTCATTACAATATT+TGG | - | tig0016220:478665-478684 | None:intergenic | 15.0% |
| !! | TTCAAAGATTAGAAGTAATA+AGG | + | tig0016220:476296-476315 | Msa1358280:CDS | 20.0% |
| !! | ATTTGTCAATAGAGAAATTA+AGG | + | tig0016220:476567-476586 | Msa1358280:CDS | 20.0% |
| !! | TTTACCTTAAACTCAAAATA+AGG | - | tig0016220:476661-476680 | None:intergenic | 20.0% |
| !! | TTCTTATTAAATTTGAGAAC+TGG | - | tig0016220:477416-477435 | None:intergenic | 20.0% |
| !!! | TGCAATTGTTTTATAAAATG+TGG | - | tig0016220:477668-477687 | None:intergenic | 20.0% |
| !!! | TTTTGTTGAATACAAATAAC+AGG | - | tig0016220:477762-477781 | None:intergenic | 20.0% |
| !! | TATTGTAATGAGATAATAAG+AGG | + | tig0016220:478667-478686 | Msa1358280:three_prime_UTR | 20.0% |
| !! | ATTGTAATGAGATAATAAGA+GGG | + | tig0016220:478668-478687 | Msa1358280:three_prime_UTR | 20.0% |
| !! | TCTAGTTTATGAGATCTAAA+TGG | - | tig0016220:475925-475944 | None:intergenic | 25.0% |
| ! | TTTAGATCTCATAAACTAGA+AGG | + | tig0016220:475925-475944 | Msa1358280:CDS | 25.0% |
| ! | TTAGATCTCATAAACTAGAA+GGG | + | tig0016220:475926-475945 | Msa1358280:CDS | 25.0% |
| ! | TAGTTCAAATCAGAAGAAAA+TGG | + | tig0016220:475981-476000 | Msa1358280:CDS | 25.0% |
| !! | AGAAGATAGAAATTTCAAGT+AGG | + | tig0016220:476022-476041 | Msa1358280:CDS | 25.0% |
| ! | ATTGAATTGTGCATAAATTC+AGG | + | tig0016220:476225-476244 | Msa1358280:CDS | 25.0% |
| ! | GTTAATGATTCTCTTGTAAT+TGG | + | tig0016220:476318-476337 | Msa1358280:CDS | 25.0% |
| ! | TAATTCTCCTCTTAAAAAAG+TGG | + | tig0016220:476344-476363 | Msa1358280:CDS | 25.0% |
| !!! | CTTTTTTTTGACTTTGTGAA+GGG | - | tig0016220:476468-476487 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTTGACTTTGTGA+AGG | - | tig0016220:476469-476488 | None:intergenic | 25.0% |
| ! | AAAAAAAGTTGCAAGAAACA+TGG | + | tig0016220:476480-476499 | Msa1358280:intron | 25.0% |
| !!! | ACATCCTTATTTTGAGTTTA+AGG | + | tig0016220:476654-476673 | Msa1358280:CDS | 25.0% |
| !! | AGTAGGTAATGCTTTAAATT+GGG | + | tig0016220:476717-476736 | Msa1358280:CDS | 25.0% |
| !! | TTATGTTCTGAATTAGAAGA+TGG | + | tig0016220:476853-476872 | Msa1358280:CDS | 25.0% |
| !!! | TTGTTGTAAGACTTTTTCTT+TGG | - | tig0016220:476949-476968 | None:intergenic | 25.0% |
| ! | TGAAATTTAATCTTTACCTG+AGG | - | tig0016220:477351-477370 | None:intergenic | 25.0% |
| ! | TCATATAAAGTCTTTCTTGA+AGG | + | tig0016220:477368-477387 | Msa1358280:intron | 25.0% |
| ! | ATTATGACGATTTAATCGAT+TGG | - | tig0016220:477610-477629 | None:intergenic | 25.0% |
| !!! | TACAACAATGTGTTTTTGAT+TGG | + | tig0016220:477846-477865 | Msa1358280:intron | 25.0% |
| !! | GTAATGAAGATAATTTTGCA+TGG | - | tig0016220:478044-478063 | None:intergenic | 25.0% |
| !!! | TTGGTGTTACAAATTATCTT+GGG | - | tig0016220:478646-478665 | None:intergenic | 25.0% |
| !!! | TTTGGTGTTACAAATTATCT+TGG | - | tig0016220:478647-478666 | None:intergenic | 25.0% |
| !! | TTCAAACAGTTTTGATGAGA+TGG | - | tig0016220:475823-475842 | None:intergenic | 30.0% |
| AAACTGTTTGAATGTGAAGA+AGG | + | tig0016220:475831-475850 | Msa1358280:CDS | 30.0% | |
| TAGAAATGGGAAATTCAAAG+AGG | + | tig0016220:475864-475883 | Msa1358280:CDS | 30.0% | |
| ! | CTGATTTGAACTATGACAAA+TGG | - | tig0016220:475974-475993 | None:intergenic | 30.0% |
| !!! | AGCATTTTTTATGCATTGTG+TGG | + | tig0016220:476069-476088 | Msa1358280:CDS | 30.0% |
| ACCTTCTTCAGTAATATCTA+AGG | + | tig0016220:476125-476144 | Msa1358280:CDS | 30.0% | |
| TCCTTAGATATTACTGAAGA+AGG | - | tig0016220:476129-476148 | None:intergenic | 30.0% | |
| TCTAGTATAGTAGAAGTAAC+AGG | + | tig0016220:476264-476283 | Msa1358280:CDS | 30.0% | |
| !!! | GAGATTTCCACTTTTTTAAG+AGG | - | tig0016220:476354-476373 | None:intergenic | 30.0% |
| ! | TTTTTCTGATTGGAGTGAAT+GGG | - | tig0016220:476437-476456 | None:intergenic | 30.0% |
| !! | CTCAAGTTGAAAAACAAACA+AGG | + | tig0016220:476631-476650 | Msa1358280:CDS | 30.0% |
| ! | GAGTAGGTAATGCTTTAAAT+TGG | + | tig0016220:476716-476735 | Msa1358280:CDS | 30.0% |
| TGACAATGATTCATCATCAA+TGG | + | tig0016220:476804-476823 | Msa1358280:CDS | 30.0% | |
| ! | GAATTAGAAGATGGAGTATT+TGG | + | tig0016220:476862-476881 | Msa1358280:CDS | 30.0% |
| ! | TGGAGTATTTGGAAACTATA+TGG | + | tig0016220:476873-476892 | Msa1358280:CDS | 30.0% |
| ! | CTTTGGTATTACAGTTTTTC+TGG | - | tig0016220:476932-476951 | None:intergenic | 30.0% |
| AAGCTTTCTCTCTTATGAAA+TGG | - | tig0016220:477036-477055 | None:intergenic | 30.0% | |
| GAAAGCTTGAAATACAAAAG+AGG | + | tig0016220:477048-477067 | Msa1358280:CDS | 30.0% | |
| GTAAATGTGGTATTACCAAT+TGG | + | tig0016220:477132-477151 | Msa1358280:CDS | 30.0% | |
| GATTGCCTAAAAGAATAAGA+GGG | - | tig0016220:477260-477279 | None:intergenic | 30.0% | |
| ATCGTGAAAAAATCAGTACA+GGG | - | tig0016220:477556-477575 | None:intergenic | 30.0% | |
| AATCGTGAAAAAATCAGTAC+AGG | - | tig0016220:477557-477576 | None:intergenic | 30.0% | |
| ! | TCACGATTTAAAAGCATGTT+TGG | + | tig0016220:477569-477588 | Msa1358280:intron | 30.0% |
| GAACATTCTTCAAACTAACT+AGG | + | tig0016220:477727-477746 | Msa1358280:intron | 30.0% | |
| ! | TTGAAGTTAGTTAGCCTAAT+TGG | + | tig0016220:477783-477802 | Msa1358280:intron | 30.0% |
| !! | CATTCAGTTTTTCAGTAACA+TGG | + | tig0016220:477883-477902 | Msa1358280:intron | 30.0% |
| !!! | TTTATCTATTTTTGGTGCAC+AGG | + | tig0016220:477951-477970 | Msa1358280:intron | 30.0% |
| !!! | TTATCTATTTTTGGTGCACA+GGG | + | tig0016220:477952-477971 | Msa1358280:intron | 30.0% |
| TTCAACTAATGTCATGCAAA+AGG | - | tig0016220:477998-478017 | None:intergenic | 30.0% | |
| ACAGTGTCTAATATTCACAA+GGG | + | tig0016220:478228-478247 | Msa1358280:CDS | 30.0% | |
| TCCATATTGTATGCAATTGT+TGG | + | tig0016220:478393-478412 | Msa1358280:three_prime_UTR | 30.0% | |
| ACCAACAATTGCATACAATA+TGG | - | tig0016220:478397-478416 | None:intergenic | 30.0% | |
| TATTGTATGCAATTGTTGGT+AGG | + | tig0016220:478397-478416 | Msa1358280:three_prime_UTR | 30.0% | |
| TTCACTTCTTACCAAATTTC+AGG | - | tig0016220:478424-478443 | None:intergenic | 30.0% | |
| AATTTGGTAAGAAGTGAACA+TGG | + | tig0016220:478426-478445 | Msa1358280:three_prime_UTR | 30.0% | |
| GCACTGTATATGTTCAAATA+AGG | - | tig0016220:478563-478582 | None:intergenic | 30.0% | |
| TGAGATGGAAGAACAGAATT+GGG | - | tig0016220:475808-475827 | None:intergenic | 35.0% | |
| ATGAGATGGAAGAACAGAAT+TGG | - | tig0016220:475809-475828 | None:intergenic | 35.0% | |
| ! | AAGGAGAAAGCATGTAGAAA+TGG | + | tig0016220:475850-475869 | Msa1358280:CDS | 35.0% |
| ! | AGGAGAAAGCATGTAGAAAT+GGG | + | tig0016220:475851-475870 | Msa1358280:CDS | 35.0% |
| CTAAATGGAAGAATCTTGCA+TGG | - | tig0016220:475910-475929 | None:intergenic | 35.0% | |
| AAATGGCCACAATTCATGAA+AGG | + | tig0016220:475998-476017 | Msa1358280:CDS | 35.0% | |
| CTTCTTCCTTTCATGAATTG+TGG | - | tig0016220:476007-476026 | None:intergenic | 35.0% | |
| ACTAGTGACAACTCTTATTC+TGG | + | tig0016220:476045-476064 | Msa1358280:CDS | 35.0% | |
| ! | CTTTTTCTGATTGGAGTGAA+TGG | - | tig0016220:476438-476457 | None:intergenic | 35.0% |
| CATTCACTCCAATCAGAAAA+AGG | + | tig0016220:476436-476455 | Msa1358280:intron | 35.0% | |
| !! | GGATTTAGCCTTTTTCTGAT+TGG | - | tig0016220:476447-476466 | None:intergenic | 35.0% |
| AGATTACCATGCAAATGAAC+AGG | - | tig0016220:476613-476632 | None:intergenic | 35.0% | |
| ATTAGAGCGAAGAATAATGC+AGG | + | tig0016220:476763-476782 | Msa1358280:CDS | 35.0% | |
| AAACAATAGCAGCACTTTCA+AGG | - | tig0016220:477005-477024 | None:intergenic | 35.0% | |
| ACTAGTAGAGCAAGTAAATG+TGG | + | tig0016220:477119-477138 | Msa1358280:CDS | 35.0% | |
| GTATTACCAATTGGAAACCA+TGG | + | tig0016220:477141-477160 | Msa1358280:CDS | 35.0% | |
| TTACTTGATCGATGGAAACA+TGG | + | tig0016220:477198-477217 | Msa1358280:CDS | 35.0% | |
| GGATTGCCTAAAAGAATAAG+AGG | - | tig0016220:477261-477280 | None:intergenic | 35.0% | |
| TCTTCACGAAATTGAACACT+AGG | - | tig0016220:477282-477301 | None:intergenic | 35.0% | |
| GTTGATATTTCTCCACAAGA+GGG | - | tig0016220:477308-477327 | None:intergenic | 35.0% | |
| CTTTCTTGAAGGAACTTAGA+TGG | + | tig0016220:477379-477398 | Msa1358280:intron | 35.0% | |
| TATTCTTAAATGCGCGTTCA+TGG | - | tig0016220:477515-477534 | None:intergenic | 35.0% | |
| GAAGAATGTTCTAACTACTG+CGG | - | tig0016220:477718-477737 | None:intergenic | 35.0% | |
| ATCCTATGTAGTATGTACAC+AGG | - | tig0016220:477819-477838 | None:intergenic | 35.0% | |
| ACTAATGTCATGCAAAAGGT+AGG | - | tig0016220:477994-478013 | None:intergenic | 35.0% | |
| TTGCATGACATTAGTTGAAG+AGG | + | tig0016220:477999-478018 | Msa1358280:CDS | 35.0% | |
| CATCAAATCAGTCATAACAG+AGG | + | tig0016220:478197-478216 | Msa1358280:CDS | 35.0% | |
| GACAGTGTCTAATATTCACA+AGG | + | tig0016220:478227-478246 | Msa1358280:CDS | 35.0% | |
| ! | CTGGCAATAAATATTTTCGC+TGG | - | tig0016220:478366-478385 | None:intergenic | 35.0% |
| ATACAATATGGACTCATAGC+TGG | - | tig0016220:478385-478404 | None:intergenic | 35.0% | |
| GGATGAAATTCACATCCATA+TGG | + | tig0016220:478452-478471 | Msa1358280:three_prime_UTR | 35.0% | |
| TCTTTCTTATGACTCATAGC+TGG | - | tig0016220:478508-478527 | None:intergenic | 35.0% | |
| ! | AAGAACTAGAGCATCTTCTA+CGG | - | tig0016220:478540-478559 | None:intergenic | 35.0% |
| TTGTGTGGTTCAGATGATGA+AGG | + | tig0016220:476084-476103 | Msa1358280:CDS | 40.0% | |
| AGATGATGAAGGTTCTGTTG+AGG | + | tig0016220:476095-476114 | Msa1358280:CDS | 40.0% | |
| TTCTTGTTCCTGTGCTTGTA+TGG | + | tig0016220:476179-476198 | Msa1358280:CDS | 40.0% | |
| !! | TGGATATGGTTGGTGAGAAT+TGG | - | tig0016220:476376-476395 | None:intergenic | 40.0% |
| CAATCACTTTCTGCTGGATA+TGG | - | tig0016220:476390-476409 | None:intergenic | 40.0% | |
| GATGAACAATCACTTTCTGC+TGG | - | tig0016220:476396-476415 | None:intergenic | 40.0% | |
| !! | GTCAGCATCTTTTGTTGTGT+TGG | - | tig0016220:476536-476555 | None:intergenic | 40.0% |
| ! | TTGCAACAAAGGCATGTTCA+GGG | - | tig0016220:476687-476706 | None:intergenic | 40.0% |
| ! | TTTGCAACAAAGGCATGTTC+AGG | - | tig0016220:476688-476707 | None:intergenic | 40.0% |
| ATGCCTTTGTTGCAAAGACA+TGG | + | tig0016220:476692-476711 | Msa1358280:CDS | 40.0% | |
| TCTCCATGTCTTTGCAACAA+AGG | - | tig0016220:476698-476717 | None:intergenic | 40.0% | |
| TGAAGAGACATCACTTGGTT+TGG | - | tig0016220:477100-477119 | None:intergenic | 40.0% | |
| ACTAGTGAAGAGACATCACT+TGG | - | tig0016220:477105-477124 | None:intergenic | 40.0% | |
| CATCGATCAAGTAACGATGA+AGG | - | tig0016220:477192-477211 | None:intergenic | 40.0% | |
| CTTCATCGTTACTTGATCGA+TGG | + | tig0016220:477190-477209 | Msa1358280:CDS | 40.0% | |
| ! | GGTTGATATTTCTCCACAAG+AGG | - | tig0016220:477309-477328 | None:intergenic | 40.0% |
| TGTGGAGAAATATCAACCAC+TGG | + | tig0016220:477311-477330 | Msa1358280:CDS | 40.0% | |
| CTCCTGTGTACATACTACAT+AGG | + | tig0016220:477814-477833 | Msa1358280:intron | 40.0% | |
| !! | AAAGGTAGGAGCACTTTCTT+CGG | - | tig0016220:477980-477999 | None:intergenic | 40.0% |
| TTCCAACATAGCCTGATTGA+AGG | + | tig0016220:478332-478351 | Msa1358280:three_prime_UTR | 40.0% | |
| ! | TGTTGGTAGGACCTGAAATT+TGG | + | tig0016220:478410-478429 | Msa1358280:three_prime_UTR | 40.0% |
| ATTGATGTGAATTGCCAGCT+AGG | - | tig0016220:478481-478500 | None:intergenic | 40.0% | |
| GAATGAATAGTCAGCTCTCA+TGG | + | tig0016220:478592-478611 | Msa1358280:three_prime_UTR | 40.0% | |
| ! | TGGAGAAAATGTGGAGTATC+TGG | + | tig0016220:478612-478631 | Msa1358280:three_prime_UTR | 40.0% |
| ! | AGAAAATGTGGAGTATCTGG+TGG | + | tig0016220:478615-478634 | Msa1358280:three_prime_UTR | 40.0% |
| GCACAGGAACAAGAAACAGA+TGG | - | tig0016220:476174-476193 | None:intergenic | 45.0% | |
| CACTTTCTGCTGGATATGGT+TGG | - | tig0016220:476386-476405 | None:intergenic | 45.0% | |
| ! | TGCAACAAAGGCATGTTCAG+GGG | - | tig0016220:476686-476705 | None:intergenic | 45.0% |
| GTTGCAAAGACATGGAGAGT+AGG | + | tig0016220:476700-476719 | Msa1358280:CDS | 45.0% | |
| AGCGAAGAATAATGCAGGCT+TGG | + | tig0016220:476768-476787 | Msa1358280:CDS | 45.0% | |
| GCGAAGAATAATGCAGGCTT+GGG | + | tig0016220:476769-476788 | Msa1358280:CDS | 45.0% | |
| GGCAAACCATGGTTTCCAAT+TGG | - | tig0016220:477150-477169 | None:intergenic | 45.0% | |
| TTTCAGCACTTGGCAAACCA+TGG | - | tig0016220:477161-477180 | None:intergenic | 45.0% | |
| !! | TTGCCAAGTGCTGAAAGCAA+TGG | + | tig0016220:477165-477184 | Msa1358280:CDS | 45.0% |
| CTTGATCGATGGAAACATGG+TGG | + | tig0016220:477201-477220 | Msa1358280:CDS | 45.0% | |
| ! | GCCTGCCCTCTTATTCTTTT+AGG | + | tig0016220:477252-477271 | Msa1358280:CDS | 45.0% |
| GCCTAAAAGAATAAGAGGGC+AGG | - | tig0016220:477256-477275 | None:intergenic | 45.0% | |
| GCGCGTTCATGGTATTTGAT+AGG | - | tig0016220:477504-477523 | None:intergenic | 45.0% | |
| !! | ATCCAGTCAGCGCTGAATTT+TGG | + | tig0016220:477690-477709 | Msa1358280:intron | 45.0% |
| !! | TTCCAAAATTCAGCGCTGAC+TGG | - | tig0016220:477695-477714 | None:intergenic | 45.0% |
| !! | CAGGAGCTTGTTGTCCAATT+AGG | - | tig0016220:477800-477819 | None:intergenic | 45.0% |
| ATGCAAAATGGCGACGCAAA+TGG | - | tig0016220:478076-478095 | None:intergenic | 45.0% | |
| !! | ATTTGCGTCGCCATTTTGCA+TGG | + | tig0016220:478075-478094 | Msa1358280:CDS | 45.0% |
| CAGTCATAACAGAGGAGAAG+AGG | + | tig0016220:478205-478224 | Msa1358280:CDS | 45.0% | |
| ! | AACCCGCCTTTTTCTCCTAT+CGG | + | tig0016220:478273-478292 | Msa1358280:CDS | 45.0% |
| AGCCTTCAATCAGGCTATGT+TGG | - | tig0016220:478337-478356 | None:intergenic | 45.0% | |
| GGTAAGAAGTGAACATGGTG+AGG | + | tig0016220:478431-478450 | Msa1358280:three_prime_UTR | 45.0% | |
| CAGCTCTCATGGAGAAAATG+TGG | + | tig0016220:478603-478622 | Msa1358280:three_prime_UTR | 45.0% | |
| GCTGTGTTCCATACAAGCAC+AGG | - | tig0016220:476190-476209 | None:intergenic | 50.0% | |
| CGCTCACCTGTTCATTTGCA+TGG | + | tig0016220:476604-476623 | Msa1358280:CDS | 50.0% | |
| GGACCATTGCTTTCAGCACT+TGG | - | tig0016220:477171-477190 | None:intergenic | 50.0% | |
| GATCGATGGAAACATGGTGG+AGG | + | tig0016220:477204-477223 | Msa1358280:CDS | 50.0% | |
| GGCTGAGAGAAAAGTTCCAG+TGG | - | tig0016220:477330-477349 | None:intergenic | 50.0% | |
| ! | GGAACTTTTCTCTCAGCCTC+AGG | + | tig0016220:477332-477351 | Msa1358280:CDS | 50.0% |
| !! | GGTAGAGGTGCCATGCAAAA+TGG | - | tig0016220:478088-478107 | None:intergenic | 50.0% |
| ! | TTCCTTAGCGCTGAAGGTAG+AGG | - | tig0016220:478103-478122 | None:intergenic | 50.0% |
| ! | CTGTTCTTCCTTAGCGCTGA+AGG | - | tig0016220:478109-478128 | None:intergenic | 50.0% |
| CTTCAGCGCTAAGGAAGAAC+AGG | + | tig0016220:478107-478126 | Msa1358280:CDS | 50.0% | |
| ! | AAAAGGCGGGTTCAGCATAG+AGG | - | tig0016220:478265-478284 | None:intergenic | 50.0% |
| ! | ACCCGCCTTTTTCTCCTATC+GGG | + | tig0016220:478274-478293 | Msa1358280:CDS | 50.0% |
| TGGAGTTGCAGCCTTCAATC+AGG | - | tig0016220:478346-478365 | None:intergenic | 50.0% | |
| CATCCATATGGACTCCTAGC+TGG | + | tig0016220:478464-478483 | Msa1358280:three_prime_UTR | 50.0% | |
| TTGCCAGCTAGGAGTCCATA+TGG | - | tig0016220:478470-478489 | None:intergenic | 50.0% | |
| TCGTGAAGATCGCCCTCTTG+TGG | + | tig0016220:477293-477312 | Msa1358280:CDS | 55.0% | |
| CACCTCTACCTTCAGCGCTA+AGG | + | tig0016220:478098-478117 | Msa1358280:CDS | 55.0% | |
| GCCCGATAGGAGAAAAAGGC+GGG | - | tig0016220:478278-478297 | None:intergenic | 55.0% | |
| CGCCCGATAGGAGAAAAAGG+CGG | - | tig0016220:478279-478298 | None:intergenic | 55.0% | |
| ! | CGCCTTTTTCTCCTATCGGG+CGG | + | tig0016220:478277-478296 | Msa1358280:CDS | 55.0% |
| ! | GCCTTTTTCTCCTATCGGGC+GGG | + | tig0016220:478278-478297 | Msa1358280:CDS | 55.0% |
| ACCCGCCCGATAGGAGAAAA+AGG | - | tig0016220:478282-478301 | None:intergenic | 55.0% | |
| ACACTTCATACCCGCCCGAT+AGG | - | tig0016220:478291-478310 | None:intergenic | 55.0% | |
| ! | CATGGTGGAGGTTGCGACTG+TGG | + | tig0016220:477216-477235 | Msa1358280:CDS | 60.0% |
| AGGTTGCGACTGTGGTGGCT+GGG | + | tig0016220:477224-477243 | Msa1358280:CDS | 60.0% | |
| GGTGGAGGTTGCGACTGTGG+TGG | + | tig0016220:477219-477238 | Msa1358280:CDS | 65.0% | |
| GAGGTTGCGACTGTGGTGGC+TGG | + | tig0016220:477223-477242 | Msa1358280:CDS | 65.0% | |
| CGACTGTGGTGGCTGGGACA+TGG | + | tig0016220:477230-477249 | Msa1358280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016220 | gene | 475757 | 478708 | 475757 | ID=Msa1358280;Name=Msa1358280 |
| tig0016220 | mRNA | 475757 | 478708 | 475757 | ID=Msa1358280-mRNA-1;Parent=Msa1358280;Name=Msa1358280-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.5|0.33|1|1|0.66|3|403|601 |
| tig0016220 | exon | 475757 | 476423 | 475757 | ID=Msa1358280-mRNA-1:exon:10733;Parent=Msa1358280-mRNA-1 |
| tig0016220 | exon | 476548 | 477353 | 476548 | ID=Msa1358280-mRNA-1:exon:10734;Parent=Msa1358280-mRNA-1 |
| tig0016220 | exon | 477973 | 478708 | 477973 | ID=Msa1358280-mRNA-1:exon:10735;Parent=Msa1358280-mRNA-1 |
| tig0016220 | CDS | 475757 | 476423 | 475757 | ID=Msa1358280-mRNA-1:cds;Parent=Msa1358280-mRNA-1 |
| tig0016220 | CDS | 476548 | 477353 | 476548 | ID=Msa1358280-mRNA-1:cds;Parent=Msa1358280-mRNA-1 |
| tig0016220 | CDS | 477973 | 478305 | 477973 | ID=Msa1358280-mRNA-1:cds;Parent=Msa1358280-mRNA-1 |
| tig0016220 | three_prime_UTR | 478306 | 478708 | 478306 | ID=Msa1358280-mRNA-1:three_prime_utr;Parent=Msa1358280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
