AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197420 MtrunA17_Chr2g0289841 96.624 237 4 1 1 237 1 233 8.59e-168 462
Msa0197420 MtrunA17_Chr4g0075711 80.660 212 41 0 25 236 15 226 1.03e-121 345
Msa0197420 MtrunA17_Chr3g0120921 77.273 198 45 0 39 236 28 225 6.04e-114 325
Msa0197420 MtrunA17_Chr8g0377621 67.052 173 57 0 64 236 59 231 5.73e-87 257
Msa0197420 MtrunA17_Chr3g0122221 67.429 175 56 1 63 236 52 226 3.59e-84 250
Msa0197420 MtrunA17_Chr7g0261611 50.000 190 93 2 46 234 29 217 2.86e-63 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197420 AT3G07880.1 77.273 198 44 1 39 236 41 237 7.42e-114 326
Msa0197420 AT1G62450.1 71.429 203 56 1 37 237 21 223 7.27e-98 285
Msa0197420 AT1G12070.1 69.608 204 60 1 35 236 19 222 3.41e-94 275

Find 86 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTGGATTTCCATCTTC+TGG 0.210863 2_1:-15286686 None:intergenic
AGCACAAATAACAATGATTA+AGG 0.217161 2_1:-15288120 None:intergenic
GTCAACCATAACATTGTTTC+AGG 0.229464 2_1:+15286764 Msa0197420:CDS
AATCAAACTGTTCACTCTTT+TGG 0.268300 2_1:+15288365 Msa0197420:three_prime_UTR
TCGTGTGGTGATCCGAAATA+AGG 0.273045 2_1:-15285605 None:intergenic
CTCATCATTGTTAAGATTAC+CGG 0.289882 2_1:-15288213 None:intergenic
CAGATTAATGTTCACTTTCC+AGG 0.308843 2_1:+15286742 Msa0197420:CDS
ACAAATATGGTCCTTGTTCT+TGG 0.315249 2_1:+15288321 Msa0197420:three_prime_UTR
CAAAACCACTTCTCCTTCAA+TGG 0.315692 2_1:-15285850 None:intergenic
CTTTCAAACCTCCCTTATTT+CGG 0.317322 2_1:+15285593 Msa0197420:five_prime_UTR
CCAGATGGTGTTGTCTCTTC+AGG 0.324079 2_1:-15287222 None:intergenic
AGAAAGGACTGGCAGTAATT+AGG 0.336601 2_1:+15288047 Msa0197420:exon
ACCAACACTGTGTGGAAAAC+TGG 0.339922 2_1:+15286797 Msa0197420:CDS
GGGTCCACAATGTACCTTAA+AGG 0.356936 2_1:+15286077 Msa0197420:CDS
GAAGGAGGTGGTGGTGGTGG+TGG 0.358005 2_1:+15285967 Msa0197420:CDS
GGATTTCCATCTTCTGGTAT+TGG 0.367712 2_1:-15286680 None:intergenic
ATGATGAGAGCTTGAGGAGG+TGG 0.368412 2_1:+15286218 Msa0197420:CDS
CCTGAAGAGACAACACCATC+TGG 0.386766 2_1:+15287222 Msa0197420:CDS
AGGAAGATGATGATGAAGAT+AGG 0.399631 2_1:+15286043 Msa0197420:CDS
CTTTGGAAGATTCTACCAAC+TGG 0.405068 2_1:+15285759 Msa0197420:five_prime_UTR
AAAGTAAACCACAAACCCTT+TGG 0.405134 2_1:-15286701 None:intergenic
AGGCTCAGAATCTTCACTTC+TGG 0.405375 2_1:-15286620 None:intergenic
TGTGAGAAATTTAGAAACTC+TGG 0.409824 2_1:+15286595 Msa0197420:intron
ATGTTTGGGGTGCACAAATA+TGG 0.411114 2_1:+15288308 Msa0197420:three_prime_UTR
ATGGAAATCCAAAGGGTTTG+TGG 0.414134 2_1:+15286693 Msa0197420:CDS
GGTATTGGAAGAACTATATC+AGG 0.417145 2_1:-15286665 None:intergenic
AATGAAGGAGGTGGTGGTGG+TGG 0.419453 2_1:+15285964 Msa0197420:CDS
AGGGAAAGAGAGAGAGGTGG+AGG 0.428643 2_1:-15285532 None:intergenic
GGAACAACTTGAAAAGGATA+AGG 0.428665 2_1:+15286098 Msa0197420:CDS
TCTTTGAGTACAACCATTGA+AGG 0.434934 2_1:+15285837 Msa0197420:five_prime_UTR
AGGTGGAAGGAACAGCTTCT+TGG 0.460032 2_1:+15286235 Msa0197420:CDS
AGTCTCAGTTTGAGGACTAA+AGG 0.467180 2_1:-15287184 None:intergenic
GATAGCAGTAAAGAAATGAT+TGG 0.472454 2_1:+15287159 Msa0197420:CDS
CTTAAAGGAACAACTTGAAA+AGG 0.479070 2_1:+15286092 Msa0197420:CDS
AGATGCCAAGAAGGCAGAGA+AGG 0.484178 2_1:-15285634 None:intergenic
TTGTGGTTTACTTTGAAAGA+AGG 0.487138 2_1:+15286710 Msa0197420:CDS
CGTGTGGTGATCCGAAATAA+GGG 0.492159 2_1:-15285604 None:intergenic
TTTAGGATGATGAGAGCTTG+AGG 0.494234 2_1:+15286212 Msa0197420:intron
GATAATGAAGGAGGTGGTGG+TGG 0.500855 2_1:+15285961 Msa0197420:CDS
ATCTGGGATGTTTGCTAGAG+GGG 0.506001 2_1:+15287239 Msa0197420:CDS
TGAGACCTGAAACAATGTTA+TGG 0.506555 2_1:-15286769 None:intergenic
TGTGAAAAGTGATAAGGAAG+AGG 0.508987 2_1:+15285909 Msa0197420:CDS
AGGAAGAAAAGATGCCAAGA+AGG 0.512847 2_1:-15285643 None:intergenic
TGATGATAACAAGTGCTACT+TGG 0.512860 2_1:+15288001 Msa0197420:CDS
TAAGAGAGGGAAAGAGAGAG+AGG 0.513591 2_1:-15285538 None:intergenic
TTTCTAATCCTGTCTGAGAC+CGG 0.514082 2_1:+15288194 Msa0197420:three_prime_UTR
GTTCTTCCAATACCAGAAGA+TGG 0.514303 2_1:+15286674 Msa0197420:CDS
TGAGAGAGAAAGTTTAAGAG+AGG 0.516276 2_1:-15285552 None:intergenic
GAGAGAGAAAGTTTAAGAGA+GGG 0.518831 2_1:-15285551 None:intergenic
GAAGATAGGAAGATTGAGTT+GGG 0.520070 2_1:+15286057 Msa0197420:CDS
GGCATATTCAGCTAGAAGTA+AGG 0.525812 2_1:+15287260 Msa0197420:CDS
TGAAGATAGGAAGATTGAGT+TGG 0.526221 2_1:+15286056 Msa0197420:CDS
TGAGTGTAAGTCTCAGTTTG+AGG 0.527673 2_1:-15287192 None:intergenic
TAAGATTACCGGTCTCAGAC+AGG 0.539093 2_1:-15288202 None:intergenic
ACATATGAATCAATCAATGT+AGG 0.540113 2_1:-15288092 None:intergenic
GTGTGGAAAACTGGTATCAA+AGG 0.544247 2_1:+15286806 Msa0197420:CDS
GAGAGGGAAAGAGAGAGAGG+TGG 0.549226 2_1:-15285535 None:intergenic
CCAGAAGATGGAAATCCAAA+GGG 0.550094 2_1:+15286686 Msa0197420:CDS
GAGTTCTGTTGCTGCTACTG+AGG 0.550601 2_1:+15286020 Msa0197420:CDS
ACCAGAAGATGGAAATCCAA+AGG 0.565847 2_1:+15286685 Msa0197420:CDS
CAAGAAGGCAGAGAAGGAAA+AGG 0.566078 2_1:-15285628 None:intergenic
TACAACCATTGAAGGAGAAG+TGG 0.568479 2_1:+15285845 Msa0197420:five_prime_UTR
AGTGTTGACATCAATGCTGT+TGG 0.578216 2_1:+15286259 Msa0197420:CDS
AGTGATAATGAAGGAGGTGG+TGG 0.578607 2_1:+15285958 Msa0197420:CDS
TATGAATCAATCAATGTAGG+AGG 0.579564 2_1:-15288089 None:intergenic
CATCTGGGATGTTTGCTAGA+GGG 0.582598 2_1:+15287238 Msa0197420:CDS
TGTTCCTTTAAGGTACATTG+TGG 0.585755 2_1:-15286081 None:intergenic
TGATAATGTGAAAAGTGATA+AGG 0.588267 2_1:+15285903 Msa0197420:CDS
CTGAAGAGACAACACCATCT+GGG 0.589031 2_1:+15287223 Msa0197420:CDS
AGGATGATGAGAGCTTGAGG+AGG 0.599532 2_1:+15286215 Msa0197420:intron
AAACAATGTTATGGTTGACC+TGG 0.602214 2_1:-15286760 None:intergenic
GTTGACATCAATGCTGTTGG+AGG 0.602320 2_1:+15286262 Msa0197420:CDS
TTTGGAAGATTCTACCAACT+GGG 0.610079 2_1:+15285760 Msa0197420:five_prime_UTR
TTCTGTTGCTGCTACTGAGG+AGG 0.610284 2_1:+15286023 Msa0197420:CDS
AGAAACAAGTAAAACACTGA+AGG 0.611286 2_1:-15288150 None:intergenic
TGAGAGCTTGAGGAGGTGGA+AGG 0.612840 2_1:+15286222 Msa0197420:CDS
CCATCTGGGATGTTTGCTAG+AGG 0.625157 2_1:+15287237 Msa0197420:CDS
GTTGAAGAAAGTGATAATGA+AGG 0.638901 2_1:+15285949 Msa0197420:CDS
CCTCTAGCAAACATCCCAGA+TGG 0.639199 2_1:-15287237 None:intergenic
GAAAGTGATAATGAAGGAGG+TGG 0.650808 2_1:+15285955 Msa0197420:CDS
TCAAGTACACCAACACTGTG+TGG 0.658417 2_1:+15286789 Msa0197420:CDS
GAAGAAAGTGATAATGAAGG+AGG 0.669435 2_1:+15285952 Msa0197420:CDS
GTAATCTTAACAATGATGAG+AGG 0.672415 2_1:+15288216 Msa0197420:three_prime_UTR
ATGCTATTATTCCAAGAACA+AGG 0.680928 2_1:-15288332 None:intergenic
CAGAGAAGGAAAAGGTCGTG+TGG 0.684242 2_1:-15285620 None:intergenic
GTGGTGATCCGAAATAAGGG+AGG 0.721116 2_1:-15285601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAACAACATAATTAAA+AGG - chr2_1:15286441-15286460 None:intergenic 10.0%
!! AATAAATGTTCTAATAAATT+TGG + chr2_1:15287703-15287722 Msa0197420:intron 10.0%
!! CAACAATAATAATATATGTT+CGG - chr2_1:15287396-15287415 None:intergenic 15.0%
!!! TTACATATTTTTACTTGTTT+GGG + chr2_1:15287619-15287638 Msa0197420:intron 15.0%
!! ACATTTATTGAATTTATTGA+TGG - chr2_1:15287692-15287711 None:intergenic 15.0%
!!! TTGAATTCTGAGAAAAAATA+TGG + chr2_1:15285870-15285889 Msa0197420:exon 20.0%
!!! TGAATTCTGAGAAAAAATAT+GGG + chr2_1:15285871-15285890 Msa0197420:exon 20.0%
!!! TTTGTTTTTGTTGTGATTTT+AGG + chr2_1:15286195-15286214 Msa0197420:intron 20.0%
!!! ATGTTGTTTATATAGTAGAT+AGG + chr2_1:15286448-15286467 Msa0197420:intron 20.0%
!! TTAATGATTCAATTAGTACT+TGG - chr2_1:15286525-15286544 None:intergenic 20.0%
!! CGAACATATATTATTATTGT+TGG + chr2_1:15287394-15287413 Msa0197420:intron 20.0%
!!! CTTACATATTTTTACTTGTT+TGG + chr2_1:15287618-15287637 Msa0197420:intron 20.0%
!! TAATTCAAATATCAGAAAAG+TGG - chr2_1:15287750-15287769 None:intergenic 20.0%
! AGAAAAATGAGATAAAGCAA+AGG - chr2_1:15285666-15285685 None:intergenic 25.0%
!! TGATAATGTGAAAAGTGATA+AGG + chr2_1:15285903-15285922 Msa0197420:CDS 25.0%
! AATTTCTCACAATAAACCAA+TGG - chr2_1:15286586-15286605 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAATCA+GGG + chr2_1:15287074-15287093 Msa0197420:intron 25.0%
! TTGAAATTGAGTTATGACAA+AGG + chr2_1:15287428-15287447 Msa0197420:intron 25.0%
! CAATATTATGAATGTTGTGA+AGG + chr2_1:15287513-15287532 Msa0197420:intron 25.0%
!!! AATTACTTCTCTGAAATTCT+TGG + chr2_1:15287765-15287784 Msa0197420:intron 25.0%
! ACATATGAATCAATCAATGT+AGG - chr2_1:15288095-15288114 None:intergenic 25.0%
! AGCACAAATAACAATGATTA+AGG - chr2_1:15288123-15288142 None:intergenic 25.0%
!!! AAATTTGAGTTTTGCATGTT+TGG + chr2_1:15288293-15288312 Msa0197420:three_prime_UTR 25.0%
!!! AATTTGAGTTTTGCATGTTT+GGG + chr2_1:15288294-15288313 Msa0197420:three_prime_UTR 25.0%
! TTTCTTTTCTTACAAACCCA+AGG + chr2_1:15285721-15285740 Msa0197420:five_prime_UTR 30.0%
!! GAACAAGAAAAAAGTACCTT+GGG - chr2_1:15285740-15285759 None:intergenic 30.0%
!! AGAACAAGAAAAAAGTACCT+TGG - chr2_1:15285741-15285760 None:intergenic 30.0%
!!! GGTACTTTTTTCTTGTTCTT+TGG + chr2_1:15285742-15285761 Msa0197420:five_prime_UTR 30.0%
!!! ATTTGTCCTTTTTTCGTTGA+TGG + chr2_1:15285801-15285820 Msa0197420:five_prime_UTR 30.0%
!!! TTTGTCCTTTTTTCGTTGAT+GGG + chr2_1:15285802-15285821 Msa0197420:five_prime_UTR 30.0%
AATAACCCATCAACGAAAAA+AGG - chr2_1:15285810-15285829 None:intergenic 30.0%
! GTTGAAGAAAGTGATAATGA+AGG + chr2_1:15285949-15285968 Msa0197420:CDS 30.0%
!!! CTTTTCAAGTTGTTCCTTTA+AGG - chr2_1:15286094-15286113 None:intergenic 30.0%
CTTAAAGGAACAACTTGAAA+AGG + chr2_1:15286092-15286111 Msa0197420:CDS 30.0%
ACCTCATAATGAAAATCCAT+TGG + chr2_1:15286567-15286586 Msa0197420:intron 30.0%
!! ACCAATGGATTTTCATTATG+AGG - chr2_1:15286571-15286590 None:intergenic 30.0%
TGTGAGAAATTTAGAAACTC+TGG + chr2_1:15286595-15286614 Msa0197420:intron 30.0%
! TTGTGGTTTACTTTGAAAGA+AGG + chr2_1:15286710-15286729 Msa0197420:CDS 30.0%
GTAAGTGATTATGCGATAAA+CGG + chr2_1:15287047-15287066 Msa0197420:intron 30.0%
! GTTAAGTTGTTTATCCAATC+AGG + chr2_1:15287073-15287092 Msa0197420:intron 30.0%
ACATAAACTATTACCCTGAT+TGG - chr2_1:15287090-15287109 None:intergenic 30.0%
GTTTATGTCAAACCATAAAC+TGG + chr2_1:15287102-15287121 Msa0197420:intron 30.0%
TCAACTGTAACAAACAAACA+AGG - chr2_1:15287141-15287160 None:intergenic 30.0%
GATAGCAGTAAAGAAATGAT+TGG + chr2_1:15287159-15287178 Msa0197420:CDS 30.0%
! ATGAAATTAGTGAAAGGTGT+AGG - chr2_1:15287539-15287558 None:intergenic 30.0%
TGGCAAATGAAATTAGTGAA+AGG - chr2_1:15287545-15287564 None:intergenic 30.0%
AATATCAGAAAAGTGGTTGA+AGG - chr2_1:15287743-15287762 None:intergenic 30.0%
ATTGCTTCATTCAAAAGCAA+AGG - chr2_1:15287812-15287831 None:intergenic 30.0%
! CTACACTTTTGATATCAGAA+AGG + chr2_1:15288031-15288050 Msa0197420:CDS 30.0%
TATGAATCAATCAATGTAGG+AGG - chr2_1:15288092-15288111 None:intergenic 30.0%
AGAAACAAGTAAAACACTGA+AGG - chr2_1:15288153-15288172 None:intergenic 30.0%
CTCATCATTGTTAAGATTAC+CGG - chr2_1:15288216-15288235 None:intergenic 30.0%
GTAATCTTAACAATGATGAG+AGG + chr2_1:15288216-15288235 Msa0197420:three_prime_UTR 30.0%
!! AGGATTTTGAAGGATGAAAT+TGG + chr2_1:15288236-15288255 Msa0197420:three_prime_UTR 30.0%
!! ATTTGAGTTTTGCATGTTTG+GGG + chr2_1:15288295-15288314 Msa0197420:three_prime_UTR 30.0%
ATGCTATTATTCCAAGAACA+AGG - chr2_1:15288335-15288354 None:intergenic 30.0%
! AATCAAACTGTTCACTCTTT+TGG + chr2_1:15288365-15288384 Msa0197420:three_prime_UTR 30.0%
GAGAGAGAAAGTTTAAGAGA+GGG - chr2_1:15285554-15285573 None:intergenic 35.0%
TGAGAGAGAAAGTTTAAGAG+AGG - chr2_1:15285555-15285574 None:intergenic 35.0%
! CTTTCAAACCTCCCTTATTT+CGG + chr2_1:15285593-15285612 Msa0197420:five_prime_UTR 35.0%
TTTGGAAGATTCTACCAACT+GGG + chr2_1:15285760-15285779 Msa0197420:five_prime_UTR 35.0%
AAAAACAAAAACGACCCAGT+TGG - chr2_1:15285777-15285796 None:intergenic 35.0%
TCTTTGAGTACAACCATTGA+AGG + chr2_1:15285837-15285856 Msa0197420:five_prime_UTR 35.0%
TGTGAAAAGTGATAAGGAAG+AGG + chr2_1:15285909-15285928 Msa0197420:CDS 35.0%
! GAAGAAAGTGATAATGAAGG+AGG + chr2_1:15285952-15285971 Msa0197420:CDS 35.0%
! AGGAAGATGATGATGAAGAT+AGG + chr2_1:15286043-15286062 Msa0197420:CDS 35.0%
TGAAGATAGGAAGATTGAGT+TGG + chr2_1:15286056-15286075 Msa0197420:CDS 35.0%
GAAGATAGGAAGATTGAGTT+GGG + chr2_1:15286057-15286076 Msa0197420:CDS 35.0%
!! TGTTCCTTTAAGGTACATTG+TGG - chr2_1:15286084-15286103 None:intergenic 35.0%
GGAACAACTTGAAAAGGATA+AGG + chr2_1:15286098-15286117 Msa0197420:CDS 35.0%
AAATATCCTTCTAGTGTTGC+TGG + chr2_1:15286410-15286429 Msa0197420:intron 35.0%
! TATCAGCAGCTTTTATTGCA+AGG - chr2_1:15286643-15286662 None:intergenic 35.0%
! GGTATTGGAAGAACTATATC+AGG - chr2_1:15286668-15286687 None:intergenic 35.0%
AAAGTAAACCACAAACCCTT+TGG - chr2_1:15286704-15286723 None:intergenic 35.0%
CAGATTAATGTTCACTTTCC+AGG + chr2_1:15286742-15286761 Msa0197420:CDS 35.0%
AAACAATGTTATGGTTGACC+TGG - chr2_1:15286763-15286782 None:intergenic 35.0%
GTCAACCATAACATTGTTTC+AGG + chr2_1:15286764-15286783 Msa0197420:CDS 35.0%
TGAGACCTGAAACAATGTTA+TGG - chr2_1:15286772-15286791 None:intergenic 35.0%
TAGCTCTTGATTCATCGTTA+AGG - chr2_1:15287313-15287332 None:intergenic 35.0%
ATCAAGAGCTAGTGTATGTT+TGG + chr2_1:15287322-15287341 Msa0197420:intron 35.0%
TGAGTTTGACAAAACCATAG+TGG - chr2_1:15287365-15287384 None:intergenic 35.0%
! TTTTCTTAACTCATAGCAGC+TGG - chr2_1:15287565-15287584 None:intergenic 35.0%
TTGAATGAAGCAATTGACAG+AGG + chr2_1:15287818-15287837 Msa0197420:intron 35.0%
! TGATGATAACAAGTGCTACT+TGG + chr2_1:15288001-15288020 Msa0197420:CDS 35.0%
! CTTTTGATATCAGAAAGGAC+TGG + chr2_1:15288036-15288055 Msa0197420:CDS 35.0%
! CAATGATGAGAGGATTTTGA+AGG + chr2_1:15288226-15288245 Msa0197420:three_prime_UTR 35.0%
ACAAATATGGTCCTTGTTCT+TGG + chr2_1:15288321-15288340 Msa0197420:three_prime_UTR 35.0%
AGGAAGAAAAGATGCCAAGA+AGG - chr2_1:15285646-15285665 None:intergenic 40.0%
! CTTTGGAAGATTCTACCAAC+TGG + chr2_1:15285759-15285778 Msa0197420:five_prime_UTR 40.0%
TACAACCATTGAAGGAGAAG+TGG + chr2_1:15285845-15285864 Msa0197420:five_prime_UTR 40.0%
CAAAACCACTTCTCCTTCAA+TGG - chr2_1:15285853-15285872 None:intergenic 40.0%
! GAAAGTGATAATGAAGGAGG+TGG + chr2_1:15285955-15285974 Msa0197420:CDS 40.0%
! TTTAGGATGATGAGAGCTTG+AGG + chr2_1:15286212-15286231 Msa0197420:intron 40.0%
!! AGTGTTGACATCAATGCTGT+TGG + chr2_1:15286259-15286278 Msa0197420:CDS 40.0%
GAAAAACCAGCAACACTAGA+AGG - chr2_1:15286419-15286438 None:intergenic 40.0%
GTTCTTCCAATACCAGAAGA+TGG + chr2_1:15286674-15286693 Msa0197420:CDS 40.0%
GGATTTCCATCTTCTGGTAT+TGG - chr2_1:15286683-15286702 None:intergenic 40.0%
ACCAGAAGATGGAAATCCAA+AGG + chr2_1:15286685-15286704 Msa0197420:CDS 40.0%
CCAGAAGATGGAAATCCAAA+GGG + chr2_1:15286686-15286705 Msa0197420:CDS 40.0%
ATGGAAATCCAAAGGGTTTG+TGG + chr2_1:15286693-15286712 Msa0197420:CDS 40.0%
GTGTGGAAAACTGGTATCAA+AGG + chr2_1:15286806-15286825 Msa0197420:CDS 40.0%
TCATATCAATCCCTCTCTCA+GGG + chr2_1:15286833-15286852 Msa0197420:intron 40.0%
TCAACAATGAGGCCAGTTTA+TGG - chr2_1:15287117-15287136 None:intergenic 40.0%
ACAAACAAGGCTCAACAATG+AGG - chr2_1:15287128-15287147 None:intergenic 40.0%
AGTCTCAGTTTGAGGACTAA+AGG - chr2_1:15287187-15287206 None:intergenic 40.0%
TGAGTGTAAGTCTCAGTTTG+AGG - chr2_1:15287195-15287214 None:intergenic 40.0%
GGCATATTCAGCTAGAAGTA+AGG + chr2_1:15287260-15287279 Msa0197420:CDS 40.0%
GAGCTAGTGTATGTTTGGAT+TGG + chr2_1:15287327-15287346 Msa0197420:intron 40.0%
! CTAGTGTATGTTTGGATTGG+CGG + chr2_1:15287330-15287349 Msa0197420:intron 40.0%
TGTCTGTGTCAATGCTTCAT+AGG - chr2_1:15287883-15287902 None:intergenic 40.0%
! AGAAAGGACTGGCAGTAATT+AGG + chr2_1:15288047-15288066 Msa0197420:exon 40.0%
! TTTCTAATCCTGTCTGAGAC+CGG + chr2_1:15288194-15288213 Msa0197420:three_prime_UTR 40.0%
! ATGTTTGGGGTGCACAAATA+TGG + chr2_1:15288308-15288327 Msa0197420:three_prime_UTR 40.0%
TAAGAGAGGGAAAGAGAGAG+AGG - chr2_1:15285541-15285560 None:intergenic 45.0%
CGTGTGGTGATCCGAAATAA+GGG - chr2_1:15285607-15285626 None:intergenic 45.0%
TCGTGTGGTGATCCGAAATA+AGG - chr2_1:15285608-15285627 None:intergenic 45.0%
CAAGAAGGCAGAGAAGGAAA+AGG - chr2_1:15285631-15285650 None:intergenic 45.0%
! CTTTTCCTTCTCTGCCTTCT+TGG + chr2_1:15285629-15285648 Msa0197420:five_prime_UTR 45.0%
! AGTGATAATGAAGGAGGTGG+TGG + chr2_1:15285958-15285977 Msa0197420:CDS 45.0%
GGGTCCACAATGTACCTTAA+AGG + chr2_1:15286077-15286096 Msa0197420:CDS 45.0%
GTTGACATCAATGCTGTTGG+AGG + chr2_1:15286262-15286281 Msa0197420:CDS 45.0%
AGGCTCAGAATCTTCACTTC+TGG - chr2_1:15286623-15286642 None:intergenic 45.0%
CCCTTTGGATTTCCATCTTC+TGG - chr2_1:15286689-15286708 None:intergenic 45.0%
TCAAGTACACCAACACTGTG+TGG + chr2_1:15286789-15286808 Msa0197420:CDS 45.0%
ACCAACACTGTGTGGAAAAC+TGG + chr2_1:15286797-15286816 Msa0197420:CDS 45.0%
! ACCAGTTTTCCACACAGTGT+TGG - chr2_1:15286801-15286820 None:intergenic 45.0%
CTCATATCAATCCCTCTCTC+AGG + chr2_1:15286832-15286851 Msa0197420:intron 45.0%
TCAAAACATGCCCTGAGAGA+GGG - chr2_1:15286846-15286865 None:intergenic 45.0%
ATCAAAACATGCCCTGAGAG+AGG - chr2_1:15286847-15286866 None:intergenic 45.0%
CTGAAGAGACAACACCATCT+GGG + chr2_1:15287223-15287242 Msa0197420:CDS 45.0%
! CATCTGGGATGTTTGCTAGA+GGG + chr2_1:15287238-15287257 Msa0197420:CDS 45.0%
! ATCTGGGATGTTTGCTAGAG+GGG + chr2_1:15287239-15287258 Msa0197420:CDS 45.0%
!! GTTTGGATTGGCGGTGTATT+TGG + chr2_1:15287339-15287358 Msa0197420:intron 45.0%
CATTGACACAGACACTTCAC+TGG + chr2_1:15287889-15287908 Msa0197420:intron 45.0%
TAAGATTACCGGTCTCAGAC+AGG - chr2_1:15288205-15288224 None:intergenic 45.0%
GTGGTGATCCGAAATAAGGG+AGG - chr2_1:15285604-15285623 None:intergenic 50.0%
CAGAGAAGGAAAAGGTCGTG+TGG - chr2_1:15285623-15285642 None:intergenic 50.0%
AGATGCCAAGAAGGCAGAGA+AGG - chr2_1:15285637-15285656 None:intergenic 50.0%
! GATAATGAAGGAGGTGGTGG+TGG + chr2_1:15285961-15285980 Msa0197420:CDS 50.0%
GAGTTCTGTTGCTGCTACTG+AGG + chr2_1:15286020-15286039 Msa0197420:CDS 50.0%
TTCTGTTGCTGCTACTGAGG+AGG + chr2_1:15286023-15286042 Msa0197420:CDS 50.0%
AGGATGATGAGAGCTTGAGG+AGG + chr2_1:15286215-15286234 Msa0197420:intron 50.0%
ATGATGAGAGCTTGAGGAGG+TGG + chr2_1:15286218-15286237 Msa0197420:CDS 50.0%
AGGTGGAAGGAACAGCTTCT+TGG + chr2_1:15286235-15286254 Msa0197420:CDS 50.0%
!! CCAGATGGTGTTGTCTCTTC+AGG - chr2_1:15287225-15287244 None:intergenic 50.0%
CCTGAAGAGACAACACCATC+TGG + chr2_1:15287222-15287241 Msa0197420:CDS 50.0%
CCTCTAGCAAACATCCCAGA+TGG - chr2_1:15287240-15287259 None:intergenic 50.0%
! CCATCTGGGATGTTTGCTAG+AGG + chr2_1:15287237-15287256 Msa0197420:CDS 50.0%
AAGAGTTAGTGAGCCTGAGC+TGG + chr2_1:15287584-15287603 Msa0197420:intron 50.0%
AGCAGATAAGAGTCCAGCTC+AGG - chr2_1:15287600-15287619 None:intergenic 50.0%
AGGGAAAGAGAGAGAGGTGG+AGG - chr2_1:15285535-15285554 None:intergenic 55.0%
GAGAGGGAAAGAGAGAGAGG+TGG - chr2_1:15285538-15285557 None:intergenic 55.0%
!! AATGAAGGAGGTGGTGGTGG+TGG + chr2_1:15285964-15285983 Msa0197420:CDS 55.0%
TGAGAGCTTGAGGAGGTGGA+AGG + chr2_1:15286222-15286241 Msa0197420:CDS 55.0%
GGCGGTGTATTTGGCCACTA+TGG + chr2_1:15287348-15287367 Msa0197420:intron 55.0%
!! GAAGGAGGTGGTGGTGGTGG+TGG + chr2_1:15285967-15285986 Msa0197420:CDS 65.0%
!! GAGGTGGTGGTGGTGGTGGT+GGG + chr2_1:15285971-15285990 Msa0197420:CDS 65.0%
!! AGGTGGTGGTGGTGGTGGTG+GGG + chr2_1:15285972-15285991 Msa0197420:CDS 65.0%
!! GGAGGTGGTGGTGGTGGTGG+TGG + chr2_1:15285970-15285989 Msa0197420:CDS 70.0%
!! GGTGGTGGTGGTGGTGGTGG+GGG + chr2_1:15285973-15285992 Msa0197420:CDS 70.0%
!! GGTGGTGGTGGTGGTGGGGG+TGG + chr2_1:15285976-15285995 Msa0197420:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 15285489 15288409 15285489 ID=Msa0197420;Name=Msa0197420
chr2_1 mRNA 15285489 15288409 15285489 ID=Msa0197420-mRNA-1;Parent=Msa0197420;Name=Msa0197420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=400|1|1|1|1|1|5|345|237
chr2_1 exon 15285489 15286119 15285489 ID=Msa0197420-mRNA-1:exon:6448;Parent=Msa0197420-mRNA-1
chr2_1 exon 15286217 15286283 15286217 ID=Msa0197420-mRNA-1:exon:6449;Parent=Msa0197420-mRNA-1
chr2_1 exon 15286609 15286827 15286609 ID=Msa0197420-mRNA-1:exon:6450;Parent=Msa0197420-mRNA-1
chr2_1 exon 15287157 15287281 15287157 ID=Msa0197420-mRNA-1:exon:6451;Parent=Msa0197420-mRNA-1
chr2_1 exon 15287993 15288409 15287993 ID=Msa0197420-mRNA-1:exon:6452;Parent=Msa0197420-mRNA-1
chr2_1 five_prime_UTR 15285489 15285888 15285489 ID=Msa0197420-mRNA-1:five_prime_utr;Parent=Msa0197420-mRNA-1
chr2_1 CDS 15285889 15286119 15285889 ID=Msa0197420-mRNA-1:cds;Parent=Msa0197420-mRNA-1
chr2_1 CDS 15286217 15286283 15286217 ID=Msa0197420-mRNA-1:cds;Parent=Msa0197420-mRNA-1
chr2_1 CDS 15286609 15286827 15286609 ID=Msa0197420-mRNA-1:cds;Parent=Msa0197420-mRNA-1
chr2_1 CDS 15287157 15287281 15287157 ID=Msa0197420-mRNA-1:cds;Parent=Msa0197420-mRNA-1
chr2_1 CDS 15287993 15288064 15287993 ID=Msa0197420-mRNA-1:cds;Parent=Msa0197420-mRNA-1
chr2_1 three_prime_UTR 15288065 15288409 15288065 ID=Msa0197420-mRNA-1:three_prime_utr;Parent=Msa0197420-mRNA-1
Gene Sequence

>Msa0197420

ATGGGTCTTGATGATGATAATGTGAAAAGTGATAAGGAAGAGGAGAAGAGTTCTCGTGTTGTTGAAGAAAGTGATAATGAAGGAGGTGGTGGTGGTGGTGGTGGGGGTGGCGATAGCAGATACATGAGTGAGAGTTCTGTTGCTGCTACTGAGGAGGAAGATGATGATGAAGATAGGAAGATTGAGTTGGGTCCACAATGTACCTTAAAGGAACAACTTGAAAAGGATAAGGATGATGAGAGCTTGAGGAGGTGGAAGGAACAGCTTCTTGGAAGTGTTGACATCAATGCTGTTGGAGAAACTCTGGAGCCAGAAGTGAAGATTCTGAGCCTTGCAATAAAAGCTGCTGATAGACCTGATATAGTTCTTCCAATACCAGAAGATGGAAATCCAAAGGGTTTGTGGTTTACTTTGAAAGAAGGTAGCAAATACAGATTAATGTTCACTTTCCAGGTCAACCATAACATTGTTTCAGGTCTCAAGTACACCAACACTGTGTGGAAAACTGGTATCAAAGTTGATAGCAGTAAAGAAATGATTGGAACCTTTAGTCCTCAAACTGAGACTTACACTCATGAGATGCCTGAAGAGACAACACCATCTGGGATGTTTGCTAGAGGGGCATATTCAGCTAGAAGTAAGTTTGTTGATGATGATAACAAGTGCTACTTGGAGATCAACTACACTTTTGATATCAGAAAGGACTGGCAGTAA

Protein sequence

>Msa0197420

MGLDDDNVKSDKEEEKSSRVVEESDNEGGGGGGGGGGDSRYMSESSVAATEEEDDDEDRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLEPEVKILSLAIKAADRPDIVLPIPEDGNPKGLWFTLKEGSKYRLMFTFQVNHNIVSGLKYTNTVWKTGIKVDSSKEMIGTFSPQTETYTHEMPEETTPSGMFARGAYSARSKFVDDDNKCYLEINYTFDIRKDWQ*