AlfalfaGEDB | Msa1368130

M. sativa cultivar zhongmu-4 / Msa1368130

KEGG: -
GO: -
PFAM: PF00085.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368130	XP_003607216.2	93.778	1109	51	1	1	1109	1	1091	0.0	2113

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368130	G7JNH2	93.778	1109	51	1	1	1109	1	1091	0.0	2113

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007480	Msa1368130	0.803741	3.015819e-49	-8.615850e-47
Msa0046100	Msa1368130	0.806210	9.188677e-50	-8.615850e-47
Msa0079400	Msa1368130	0.811414	7.085606e-51	-8.615850e-47
Msa0146260	Msa1368130	0.807620	4.623407e-50	-8.615850e-47
Msa0225750	Msa1368130	0.802002	6.897468e-49	-8.615850e-47
Msa0226890	Msa1368130	0.800683	1.284412e-48	-8.615850e-47
Msa0259290	Msa1368130	0.812944	3.285100e-51	-8.615850e-47
Msa0388960	Msa1368130	0.802230	6.191620e-49	-8.615850e-47
Msa0410500	Msa1368130	0.801515	8.684232e-49	-8.615850e-47
Msa0410650	Msa1368130	0.825983	3.480105e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1368130	MtrunA17_Chr4g0038001	93.688	1109	51	2	1	1109	1	1090	0.0	2107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1368130	AT3G19780.1	37.891	1119	584	24	25	1109	18	1059	703
Msa1368130	AT3G19780.2	38.070	1119	581	25	25	1109	18	1058	702
Msa1368130	AT3G19780.4	37.965	914	492	21	224	1109	1	867	560
Msa1368130	AT3G19780.3	38.532	872	464	19	266	1109	22	849	552

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Find 245 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCTAACGGATTCAAT+TGG	0.514279	tig0018621:+4823	Msa1368130:CDS
AAAACTAAGTTCTCTAGCAA+AGG	0.577164	tig0018621:+7581	Msa1368130:CDS
AAAGAACTCACTTGTAGATC+AGG	0.414529	tig0018621:-7516	None:intergenic
AAAGAGGCTCCTTTGTCCCT+TGG	0.363881	tig0018621:+10692	Msa1368130:CDS
AAAGCTTGAGATGTGATTCG+AGG	0.575128	tig0018621:-8275	None:intergenic
AAATCCAAATTAACAAATGG+AGG	0.598901	tig0018621:-8233	None:intergenic
AACAAATATGATGGAGCCCT+AGG	0.620788	tig0018621:+10416	Msa1368130:CDS
AACAACTTGAACACCCAGCT+AGG	0.615039	tig0018621:-6773	None:intergenic
AACAAGACTTCTTAGTGTAA+AGG	0.475281	tig0018621:-11194	None:intergenic
AACAATTTCAAAAGAAAATT+TGG	0.131795	tig0018621:-11136	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGTAGGGTATAAATATTC+AGG	+	tig0018621:4889-4908	Msa1368130:CDS	30.0%
GTTTATCTTACATTTGCTCA+CGG	+	tig0018621:5168-5187	Msa1368130:intron	30.0%
TTTATCTTACATTTGCTCAC+GGG	+	tig0018621:5169-5188	Msa1368130:intron	30.0%
ATTCAAACAAACCCGTATTA+TGG	-	tig0018621:5228-5247	None:intergenic	30.0%
AGTACTTATAAGACTGTTTG+AGG	+	tig0018621:5294-5313	Msa1368130:intron	30.0%
GTACTTATAAGACTGTTTGA+GGG	+	tig0018621:5295-5314	Msa1368130:intron	30.0%
AATATGCTGAAAACAGCTTA+TGG	-	tig0018621:5356-5375	None:intergenic	30.0%
GCTATAAAATGAATTTCAGG+TGG	-	tig0018621:5598-5617	None:intergenic	30.0%
TGATACCATATTAGAAATGG+TGG	-	tig0018621:5906-5925	None:intergenic	30.0%
CTCTGATACCATATTAGAAA+TGG	-	tig0018621:5909-5928	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018621	gene	4461	11206	4461	ID=Msa1368130;Name=Msa1368130
tig0018621	mRNA	4461	11206	4461	ID=Msa1368130-mRNA-1;Parent=Msa1368130;Name=Msa1368130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=86\|0.83\|0.57\|1\|1\|1\|7\|218\|1109
tig0018621	exon	4461	5126	4461	ID=Msa1368130-mRNA-1:exon:328;Parent=Msa1368130-mRNA-1
tig0018621	exon	6305	6385	6305	ID=Msa1368130-mRNA-1:exon:329;Parent=Msa1368130-mRNA-1
tig0018621	exon	6469	6863	6469	ID=Msa1368130-mRNA-1:exon:330;Parent=Msa1368130-mRNA-1
tig0018621	exon	7168	8503	7168	ID=Msa1368130-mRNA-1:exon:331;Parent=Msa1368130-mRNA-1
tig0018621	exon	8923	9053	8923	ID=Msa1368130-mRNA-1:exon:332;Parent=Msa1368130-mRNA-1
tig0018621	exon	9870	10011	9870	ID=Msa1368130-mRNA-1:exon:333;Parent=Msa1368130-mRNA-1
tig0018621	exon	10324	11206	10324	ID=Msa1368130-mRNA-1:exon:334;Parent=Msa1368130-mRNA-1
tig0018621	five_prime_UTR	4461	4546	4461	ID=Msa1368130-mRNA-1:five_prime_utr;Parent=Msa1368130-mRNA-1
tig0018621	CDS	4547	5126	4547	ID=Msa1368130-mRNA-1:cds;Parent=Msa1368130-mRNA-1
tig0018621	CDS	6305	6385	6305	ID=Msa1368130-mRNA-1:cds;Parent=Msa1368130-mRNA-1
tig0018621	CDS	6469	6863	6469	ID=Msa1368130-mRNA-1:cds;Parent=Msa1368130-mRNA-1
tig0018621	CDS	7168	8503	7168	ID=Msa1368130-mRNA-1:cds;Parent=Msa1368130-mRNA-1
tig0018621	CDS	8923	9053	8923	ID=Msa1368130-mRNA-1:cds;Parent=Msa1368130-mRNA-1
tig0018621	CDS	9870	10011	9870	ID=Msa1368130-mRNA-1:cds;Parent=Msa1368130-mRNA-1
tig0018621	CDS	10324	10988	10324	ID=Msa1368130-mRNA-1:cds;Parent=Msa1368130-mRNA-1
tig0018621	three_prime_UTR	10989	11206	10989	ID=Msa1368130-mRNA-1:three_prime_utr;Parent=Msa1368130-mRNA-1

Gene Sequence

>Msa1368130

ATGAAGCCTCCGATCCCGTTATCAACGACGATGATAGCCATAACCCTAGCAACAGCAACACTATCTCTCTCCATCATCCCCACCTCATCATGGCAAATCCTCACTTCCCACAATTTCACTTCCCAGATCCAACTCCACCCACACATCCTCCTCCTCCTCACTCTCCCTTGGTCCGGCGAAGCTCGTTCCCTTATGAACGATATCTCAAACGCAATCTCCAACAAACCGCAAGAATTTCAAAATCTTAAACTAATGTTCATGTACATCAATAATGAAAAAACGCTAACGGATTCAATTGGTGTTAGTGTTGATGGAATGGTGAATGTTGTTTATTTTCATCATTCTGTAGGGTATAAATATTCAGGAAGACTTTCGGCGAGAAATGTGTTGAATTCGGTTCATGGCTATGTTAACTTTGCGCCTGAGGAGGTTCCTTTGAAAATGATTGATAGTGCGAAGGATTTCGCGACGTTTGTTGATTCGGCTGATGTGAGTATCGTTCTTGTTGATTTTTGTGGATGGACGCAGAAGTTGTTAGCGAAGAGCAAGAAATTCAATGGAACACATAATAGTAATATTGAGCTTCACCATATAATGGGTTTCAGTGGAGAGAATGATAGAATACTGGCGTCAAGGGGCAAGACTAACCAGAAGGTTGCTGAGGGGGGCATGTGCAAGGTTGAGCACAGCACCGATAAAGGGTTTTGTGAAGTTCCTTCGCTTTGGGAATTTAGCTCAGTTAATGATGGCCGTTTGGGGGGCTTCACGGATCAGAACAGTCATAATCTAAATCCCTGTTCATTTGAAGAATTTGAGCGTTTCCACTCTTTCTACGAGAAATTCATGAATGCTGTGAAAGAATTTTTTCTGCCTTCTGAACGTCATAGATTTGGTCTGGTTTCCGATAGGGCGATGCTTTCATCCTTAGGTGTTGCTGATTCTGGTTCATGGTTTGCAGTTCGCTACCTAGCTGGGTGTTCAAGTTGTTCACATATTCTTAAAGAAGAGGATGACTTGAACTATGTTTTGCAGAGGAATAATTATTTTGTCAAAGAGTTGGAAGGCAATGATCACAATCAAGAAGCCACTATTCCAGCAAATAAGCCGTCAGTACTTCTATTTGTTGACAGATCATCCGACTCCTCAGAAACTAGGGGAAAGAGTATGGAAGCTCTTAAAGCTCTTAGAGTATTGGCACAGCATTATCATGTGAATCAAATAGATACAAAGAATAATGGTAATCACAAAAAAGTTTCTATCCGAAATTATCGTGGCACAAAGAGCACACCTGATCTTCTTAAGTCAAATTCGGTGATGAAAGCTCAGAAGATTAAACTAAACAAGAAGATATCTTCCATCACGATTATTAATGAAGGTAAACAAGTTAGTGTGGATAATGTAGCCCCTGATCTACAAGTGAGTTCTTTGAATGAGTTATTGAGTTACATTGTCCAGCAAAAGAAGGATGGAAAACTAAGTTCTCTAGCAAAGGATTTAGGTTTCCAACTTTTATCCGGTGATATTGACATTAGTTCAGCTAATACACAACAACAATTGCATTCAGAAGTTCAGTCAAATCAAATTTCAGCAGAAACTTCTCAAGAAGATCATACAGGTAGTACTGCAATGACAGAAGGCTATCCATATAAATCTGCTGTAGAGCCTGGGAAAAATCCCAAACTGGTCGTGCTATCTTCTCAGCATGAAGTCAAGAAATCTTCTATTGTCACCAGTGAAGAGATAAAAGCAGTGAAATCTGAAGAATCCATCATAGATCACGGACTTCCTAGTGCAAAAATTATTCAATCAGAAATAGATAGTTCCACCGATGGTTCTTCTGATGGAAACAATAATGGAAAACAGGATCATTTTCTTGGTTTTAATGGTTCCTTTTTCTATTCTGATGGTAATTATCAATTGCTTGAAAGGCTCACTGGTACTTCTAGAATTCCGTCTTTGGTCATAGTTGATCCCTTTTGGCAGCAACATTATGTTTACCCTGAAGAGAAAAGTTTCAACTATGCTTCAATGTATGGTTTTCTTTCTGAGTTTCTTAATGGAACCCTGGTTCCATATCAATTGTCAGAACATGTTCTTCAAGGCCAAAGGGAGGCCATGCGTCCTCCATTTGTTAATTTGGATTTTCATGAGGTGGATTCTATACCTCGAATCACATCTCAAGCTTTCTCTGAATTTGTTATTGGTTTCAACCGTTCTAACAAAGAAAACACTTCAAATGCATGGAATAAAGATGTCTTGGTCTTGTTTAGCAATAGTTGGTGTGCATTCTGCCAGAGAATGGAATTGATTGTTCGTGAAGTATATCGGGCCATCAAGGGTCATGTTGATACATTAAAGGGGGGATCTGATAACGGTGAGAATTTGACTGTATTCTCTAATAGTTTGACAACTGATTGCTACATGTCAGAAGATTTTGATTATCTTACGATGAAGATTCCAACAATCTACTTATTGGATTGTACATTGAATGACTGCCATCTGGTACTGAAGTCAGTAGATCAGAGGGATGTTTATCCTGCACTGGTTTTATTTCCAGCAGAAAAGAAGGAACCTCTTCTTTATGAAGGAGATGTGGCTGTAGTTGATGTTATGAAGTTTGTAGCAGAACATGGAAATAACTTTAATCATCTTATCAAAGATAAAGCAGTTCTGTGGCTGTCTGAAACAGTAATCAGGAATCAAAACTTACATGGTACTTTGCAACCTGACGTTCTTGAGGAATCACTTCATACACGGAACAAATATGATGGAGCCCTAGGTCAAGATAAAATACCGAATCAGGTGGTCGAACCTAACATGATAAATTTACCAGTATCAAATGGATGGCAAGAAACATTGCCTCATGTGGTGGTCGGTTCGGTGCTAATTGCCACAGAAAAGCTTTTGGGGGTTGAGCCATTTGGTGGATCCAAGATTCTCATTGTGGCAGCGGATCAAGCAACCGGATTTCAAGGTCTTATCATTAACAAGCATCTAAAATGGACTAACTTGGAAGAAGACTTGGAAAAATTGAAAGAGGCTCCTTTGTCCCTTGGGGGTCCAGTTGTGAAAACTGGAATGCCTCTTTTATCCTTAACCAGAACAGTTTCCGGATATAATTTACCTGAAATCCTACCTGGAATTTACTTCCTTGATTATGTAGTGACAACTAGTATAATCCAGAAGCTGAAATATGCAAAAGAACCAGTTGACAGCTACTGGTTTTTCTTCGGGTACTCAAATTGGGAATGGAATCAGTTGTATCATGAGATGGCAGAAGGAGCGTGGAATTTGAGTGAGGATGGAGCGAGACATTTACAATGGCCTTGA

Protein sequence

>Msa1368130

MKPPIPLSTTMIAITLATATLSLSIIPTSSWQILTSHNFTSQIQLHPHILLLLTLPWSGEARSLMNDISNAISNKPQEFQNLKLMFMYINNEKTLTDSIGVSVDGMVNVVYFHHSVGYKYSGRLSARNVLNSVHGYVNFAPEEVPLKMIDSAKDFATFVDSADVSIVLVDFCGWTQKLLAKSKKFNGTHNSNIELHHIMGFSGENDRILASRGKTNQKVAEGGMCKVEHSTDKGFCEVPSLWEFSSVNDGRLGGFTDQNSHNLNPCSFEEFERFHSFYEKFMNAVKEFFLPSERHRFGLVSDRAMLSSLGVADSGSWFAVRYLAGCSSCSHILKEEDDLNYVLQRNNYFVKELEGNDHNQEATIPANKPSVLLFVDRSSDSSETRGKSMEALKALRVLAQHYHVNQIDTKNNGNHKKVSIRNYRGTKSTPDLLKSNSVMKAQKIKLNKKISSITIINEGKQVSVDNVAPDLQVSSLNELLSYIVQQKKDGKLSSLAKDLGFQLLSGDIDISSANTQQQLHSEVQSNQISAETSQEDHTGSTAMTEGYPYKSAVEPGKNPKLVVLSSQHEVKKSSIVTSEEIKAVKSEESIIDHGLPSAKIIQSEIDSSTDGSSDGNNNGKQDHFLGFNGSFFYSDGNYQLLERLTGTSRIPSLVIVDPFWQQHYVYPEEKSFNYASMYGFLSEFLNGTLVPYQLSEHVLQGQREAMRPPFVNLDFHEVDSIPRITSQAFSEFVIGFNRSNKENTSNAWNKDVLVLFSNSWCAFCQRMELIVREVYRAIKGHVDTLKGGSDNGENLTVFSNSLTTDCYMSEDFDYLTMKIPTIYLLDCTLNDCHLVLKSVDQRDVYPALVLFPAEKKEPLLYEGDVAVVDVMKFVAEHGNNFNHLIKDKAVLWLSETVIRNQNLHGTLQPDVLEESLHTRNKYDGALGQDKIPNQVVEPNMINLPVSNGWQETLPHVVVGSVLIATEKLLGVEPFGGSKILIVAADQATGFQGLIINKHLKWTNLEEDLEKLKEAPLSLGGPVVKTGMPLLSLTRTVSGYNLPEILPGIYFLDYVVTTSIIQKLKYAKEPVDSYWFFFGYSNWEWNQLYHEMAEGAWNLSEDGARHLQWP*