AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226890 MtrunA17_Chr2g0333251 83.034 725 66 6 32 720 1 704 0.0 1108
Msa0226890 MtrunA17_Chr3g0137541 40.541 703 318 12 79 697 15 701 7.44e-149 450
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226890 AT3G15920.1 39.500 800 328 23 32 720 1 755 1.86e-152 461
Msa0226890 AT4G32160.1 37.110 706 337 14 79 700 16 698 3.42e-120 377
Msa0226890 AT2G25350.1 34.815 675 322 16 79 681 15 643 1.25e-96 312
Msa0226890 AT2G25350.2 35.927 604 294 12 79 610 15 597 1.81e-94 307
Msa0226890 AT2G25350.5 36.396 566 267 12 79 572 15 559 3.79e-88 288
Msa0226890 AT2G25350.3 36.396 566 267 12 79 572 15 559 3.79e-88 288
Msa0226890 AT2G25350.4 36.175 481 214 12 79 487 15 474 6.53e-67 229

Find 145 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTGCTGCATCTGTTTC+TGG 0.096087 2_1:+77354112 Msa0226890:CDS
CCGTGGCTAGTCTCTGCTTC+TGG 0.153799 2_1:-77354567 None:intergenic
TTGTAGACAATGCCAGTTTA+AGG 0.154348 2_1:+77357739 Msa0226890:CDS
TCTCTTCCACCATTCCTTCT+TGG 0.181294 2_1:+77352699 Msa0226890:CDS
TATCATCATCAATCATAAAT+TGG 0.233168 2_1:-77352359 None:intergenic
TCTTCATCTTGTTCAGGATA+TGG 0.244138 2_1:-77352519 None:intergenic
AATTAAAAGTGAAGCTCTTT+TGG 0.255854 2_1:+77353602 Msa0226890:CDS
TGCTTGCTAAATGTGATTAT+TGG 0.277573 2_1:-77358027 None:intergenic
GGAGTCCTCCACCACCTAAT+TGG 0.285715 2_1:+77352625 Msa0226890:CDS
CACACCTCTTCTTCTCCTCT+TGG 0.293191 2_1:+77352672 Msa0226890:CDS
ATGATTGATGATGATATAAA+AGG 0.293546 2_1:+77352366 Msa0226890:CDS
GATGTTTCGCATGACCTTCC+TGG 0.294851 2_1:+77354460 Msa0226890:CDS
ATTGACTTGTTTCCTTAAAC+TGG 0.308319 2_1:-77357751 None:intergenic
TACTTCACCATCTGATGCTT+TGG 0.326539 2_1:+77356894 Msa0226890:CDS
CTCTTCCTCTTGGTATGGAT+TGG 0.330203 2_1:+77352604 Msa0226890:CDS
TACACAAATGCAGTGGGATA+TGG 0.344319 2_1:+77356065 Msa0226890:CDS
TACAAAAGCATCCGTTGTTC+AGG 0.349368 2_1:+77356244 Msa0226890:CDS
CAAGAGACCAATCCGATTAT+CGG 0.352515 2_1:-77356932 None:intergenic
AGCTGTGTCAACTTTGCTTC+AGG 0.353816 2_1:+77354438 Msa0226890:CDS
GGACAACTAATGAAGAATTA+AGG 0.355410 2_1:+77357697 Msa0226890:CDS
TATACAACTACAGATGATAC+TGG 0.355565 2_1:+77357675 Msa0226890:CDS
TTCTCCTCTTCCTCTTGGTA+TGG 0.359729 2_1:+77352599 Msa0226890:CDS
TCAGCGACGGCGTTTATTAG+AGG 0.363778 2_1:+77353773 Msa0226890:intron
TGTTAGCAACATCCGATAAT+CGG 0.364824 2_1:+77356920 Msa0226890:CDS
TCATCATCTTCATCTTGTTC+AGG 0.373924 2_1:-77352525 None:intergenic
CGTGGCTAGTCTCTGCTTCT+GGG 0.375277 2_1:-77354566 None:intergenic
ATCGAGTATAGTTAAATTGC+CGG 0.390524 2_1:+77357964 Msa0226890:three_prime_UTR
ACTATAGCTCTTCGCCTAGA+TGG 0.395183 2_1:+77354337 Msa0226890:CDS
AGATATGAAGTTGCTAATAA+AGG 0.405971 2_1:+77356361 Msa0226890:CDS
ATTCGCACAGAATTCTATTC+CGG 0.406058 2_1:-77357983 None:intergenic
TTACTTGTAGGTCAAAGATT+TGG 0.407476 2_1:+77355966 Msa0226890:intron
CCCTTCTGAGGTTTCTGAGC+TGG 0.417560 2_1:+77354144 Msa0226890:CDS
CCTTCTGAGGTTTCTGAGCT+GGG 0.420819 2_1:+77354145 Msa0226890:CDS
GACAAGGTCACTGAGAATTC+TGG 0.421046 2_1:+77354310 Msa0226890:CDS
GCAACAGCTCAGCGAATTGA+TGG 0.429244 2_1:+77356421 Msa0226890:CDS
CTCATTAGTAAAGTCTTGGC+TGG 0.443866 2_1:-77354275 None:intergenic
ACACCTTCTCCTCTTCCTCT+TGG 0.452825 2_1:+77352594 Msa0226890:CDS
GTGGTGGGACCGTTCCAATT+AGG 0.455501 2_1:-77352639 None:intergenic
TGGCGAAGGCAGGTATTTCA+TGG 0.455775 2_1:-77353559 None:intergenic
GGAACGGTCCCACCACTCTC+TGG 0.457143 2_1:+77352646 Msa0226890:CDS
TGATCAACACTTGTTTCAGT+TGG 0.459583 2_1:-77354244 None:intergenic
AGCAAGATTGAATCAAGAAA+TGG 0.460614 2_1:+77354615 Msa0226890:CDS
TTCATCTTCCTCATTCTCCT+CGG 0.464822 2_1:-77357799 None:intergenic
AGTAACCTAGTAACATACAT+AGG 0.467250 2_1:-77357895 None:intergenic
ACTTCTCGATACAGAAATAT+CGG 0.467786 2_1:-77353817 None:intergenic
CTGAGTTTCCAGAGGATACA+TGG 0.469287 2_1:-77354486 None:intergenic
GAAGAAACAAACATCATGGT+TGG 0.475129 2_1:-77358052 None:intergenic
ATTGCGGACAACTTAACATC+GGG 0.479149 2_1:+77354205 Msa0226890:CDS
ATGTTTCGCATGACCTTCCT+GGG 0.483805 2_1:+77354461 Msa0226890:CDS
TATCCTCATTAGTAAAGTCT+TGG 0.484477 2_1:-77354279 None:intergenic
TTATAATGATTTAGGATGAA+AGG 0.489862 2_1:+77356207 Msa0226890:intron
CGGAAGGAAGAGTGTTGTGT+TGG 0.494391 2_1:+77352433 Msa0226890:CDS
ATGGGATCAGGCACAGCTCT+TGG 0.494460 2_1:+77357614 Msa0226890:intron
GAGAACTCTTCAGAAGGAAA+AGG 0.505418 2_1:+77356747 Msa0226890:intron
GTGTGGGGCCAGAGAGTGGT+GGG 0.508183 2_1:-77352654 None:intergenic
CCTGGGAGCCATGTATCCTC+TGG 0.509448 2_1:+77354478 Msa0226890:CDS
TGTACCCTATGTATGTTACT+AGG 0.511797 2_1:+77357890 Msa0226890:three_prime_UTR
GAAGAAGAAGGAGAGGATTG+AGG 0.519182 2_1:-77352731 None:intergenic
AAGAGGAGAAGAAGAGGTGT+GGG 0.520026 2_1:-77352670 None:intergenic
TAGTAGTGGTAATAGCTTGA+GGG 0.520932 2_1:-77352877 None:intergenic
GTGAGTGTTGGCGGAACGGA+AGG 0.523759 2_1:+77352417 Msa0226890:CDS
GTTTGAAGAAACAAACATCA+TGG 0.525631 2_1:-77358056 None:intergenic
GACGGCGTTTATTAGAGGAT+TGG 0.529635 2_1:+77353778 Msa0226890:CDS
GTTCTAACTGAGAGCTTCTG+AGG 0.530046 2_1:-77356394 None:intergenic
TGAAGAATTAAGGAAAATGC+TGG 0.530259 2_1:+77357707 Msa0226890:CDS
AGAAAAGATGTGAGTGTTGG+CGG 0.534220 2_1:+77352408 Msa0226890:CDS
TGGTGATGATACCCCTTCTG+AGG 0.536049 2_1:+77354132 Msa0226890:CDS
GTGTGAAGTCGGCTCCATCT+AGG 0.536680 2_1:-77354351 None:intergenic
CCAGAGGATACATGGCTCCC+AGG 0.537554 2_1:-77354478 None:intergenic
AACTTGTGTCGCTCATCCAA+TGG 0.540733 2_1:-77354526 None:intergenic
ACTCTTGAAGCCTCTTCTGA+AGG 0.541023 2_1:-77356825 None:intergenic
GGTGATAAATCATATGCGTA+TGG 0.541315 2_1:-77352465 None:intergenic
AATGAAATTGAAGTTTGAAG+AGG 0.542626 2_1:+77356119 Msa0226890:CDS
CTGCAGAGAAAACATGCAGC+AGG 0.543507 2_1:+77356017 Msa0226890:CDS
AGGAGAAGGTGTTTCAGAAA+CGG 0.545944 2_1:-77352583 None:intergenic
GGTGTGGGGCCAGAGAGTGG+TGG 0.547475 2_1:-77352655 None:intergenic
AATCATAAATTGGTTGTGCA+CGG 0.548091 2_1:-77352349 None:intergenic
CAATCCATACCAAGAGGAAG+AGG 0.549149 2_1:-77352603 None:intergenic
TGAGGAACAAGAAGCCAAGA+AGG 0.551912 2_1:-77352713 None:intergenic
ATCATAAATTGGTTGTGCAC+GGG 0.552009 2_1:-77352348 None:intergenic
CAGCCAAGACTTTACTAATG+AGG 0.552795 2_1:+77354276 Msa0226890:CDS
TCAATTTCATTTCTGTCTCG+AGG 0.553699 2_1:-77356107 None:intergenic
AACAAGAAGCCAAGAAGGAA+TGG 0.560175 2_1:-77352708 None:intergenic
GCAACATCCGATAATCGGAT+TGG 0.562831 2_1:+77356925 Msa0226890:CDS
ATACCAAGAGGAAGAGGAGA+AGG 0.563232 2_1:-77352597 None:intergenic
CCGTTCCAATTAGGTGGTGG+AGG 0.565888 2_1:-77352630 None:intergenic
GAAAGAAAAGATGTGAGTGT+TGG 0.567255 2_1:+77352405 Msa0226890:CDS
AGAGGTGTGGGGCCAGAGAG+TGG 0.567559 2_1:-77352658 None:intergenic
TCTCAAATCCGAGGAGAATG+AGG 0.568189 2_1:+77357791 Msa0226890:CDS
AAGTCCAAGAGGAGAAGAAG+AGG 0.569896 2_1:-77352676 None:intergenic
AGATGTGAGTGTTGGCGGAA+CGG 0.572707 2_1:+77352413 Msa0226890:CDS
GCGCAATATGATTCTAGTAG+TGG 0.576713 2_1:-77352891 None:intergenic
AGCATTAGCTGGTGTGAAGT+CGG 0.577674 2_1:-77354362 None:intergenic
CAAGAGGAGAAGAAGAGGTG+TGG 0.581319 2_1:-77352671 None:intergenic
GTAACCTAGTAACATACATA+GGG 0.582141 2_1:-77357894 None:intergenic
TTCTTCTTCTGATCCCGTCG+TGG 0.585721 2_1:+77352751 Msa0226890:CDS
GGACCGTTCCAATTAGGTGG+TGG 0.587808 2_1:-77352633 None:intergenic
TTCTAACTGAGAGCTTCTGA+GGG 0.594772 2_1:-77356393 None:intergenic
TATTCAGAGAACTCTTCAGA+AGG 0.594795 2_1:+77356741 Msa0226890:intron
AGGATACATGGCTCCCAGGA+AGG 0.600732 2_1:-77354474 None:intergenic
GTTTAGTTTAGTACCACGAC+GGG 0.601531 2_1:-77352764 None:intergenic
GGCGAAGGCAGGTATTTCAT+GGG 0.601932 2_1:-77353558 None:intergenic
CCCAGCTCAGAAACCTCAGA+AGG 0.602240 2_1:-77354145 None:intergenic
CTAGTAGTGGTAATAGCTTG+AGG 0.603638 2_1:-77352878 None:intergenic
GAAACGGCGTCGTTTCCGAG+TGG 0.603676 2_1:-77352567 None:intergenic
AACAAATCCAAAGCATCAGA+TGG 0.605868 2_1:-77356901 None:intergenic
AGACCGTCAACAGAAAACAT+TGG 0.606258 2_1:+77354394 Msa0226890:CDS
AAGACAATATCTTGTGACAA+AGG 0.608890 2_1:+77354642 Msa0226890:CDS
ACAAATGCAGTGGGATATGG+AGG 0.618627 2_1:+77356068 Msa0226890:CDS
AGTGTGCAATCCTTCAGAAG+AGG 0.619022 2_1:+77356815 Msa0226890:CDS
AGTAGTGGTAATAGCTTGAG+GGG 0.620169 2_1:-77352876 None:intergenic
TAGCTGATATCGTTCATCAA+AGG 0.620616 2_1:-77352486 None:intergenic
GTGGGACCGTTCCAATTAGG+TGG 0.624328 2_1:-77352636 None:intergenic
AAAGGTTTACACAAATGCAG+TGG 0.626560 2_1:+77356058 Msa0226890:CDS
AAGGTTTACACAAATGCAGT+GGG 0.626811 2_1:+77356059 Msa0226890:CDS
AGTGGGATATGGAGGAACTT+CGG 0.629220 2_1:+77356076 Msa0226890:CDS
CATTTGCTTCTCCTGAACAA+CGG 0.635355 2_1:-77356255 None:intergenic
ATACAACTACAGATGATACT+GGG 0.636328 2_1:+77357676 Msa0226890:CDS
CCAGCTCAGAAACCTCAGAA+GGG 0.640075 2_1:-77354144 None:intergenic
GATTGGTCTCTTGCTTGCAG+AGG 0.641568 2_1:+77356942 Msa0226890:CDS
TATTGCGGACAACTTAACAT+CGG 0.642658 2_1:+77354204 Msa0226890:CDS
AAGAAGCCAAGAAGGAATGG+TGG 0.642967 2_1:-77352705 None:intergenic
TGAAAGTTCTGATCATATTG+CGG 0.642983 2_1:+77354189 Msa0226890:CDS
TCTCCTCGGATTTGAGAGCA+CGG 0.646545 2_1:-77357785 None:intergenic
CAGCTCAGAAACCTCAGAAG+GGG 0.649657 2_1:-77354143 None:intergenic
TTAGGATGAAAGGTTGCTAG+CGG 0.654903 2_1:+77356217 Msa0226890:intron
CCGCCGTGCTCTCAAATCCG+AGG 0.655129 2_1:+77357782 Msa0226890:CDS
ACAAGATGTAGAAAATGTTG+TGG 0.656733 2_1:+77357638 Msa0226890:CDS
TATAACTATCTCAATCCACT+CGG 0.656997 2_1:+77352552 Msa0226890:CDS
ACAGCTCAGCGAATTGATGG+AGG 0.664421 2_1:+77356424 Msa0226890:CDS
CCTCCACCACCTAATTGGAA+CGG 0.670773 2_1:+77352630 Msa0226890:CDS
AGTTTAGTTTAGTACCACGA+CGG 0.675186 2_1:-77352765 None:intergenic
AATGTTGTGGATGCTGCGGA+AGG 0.680763 2_1:+77357651 Msa0226890:CDS
GGTGGAAGAGAAAGTCCAAG+AGG 0.682786 2_1:-77352687 None:intergenic
CCAGAAGCAGAGACTAGCCA+CGG 0.683328 2_1:+77354567 Msa0226890:CDS
TAACAAATCTGAGTTTCCAG+AGG 0.689483 2_1:-77354494 None:intergenic
AGAGGAGAAGAAGAGGTGTG+GGG 0.689904 2_1:-77352669 None:intergenic
GGGATATGGAGGAACTTCGG+AGG 0.692756 2_1:+77356079 Msa0226890:CDS
TGAGGATAATAGTACAGACA+AGG 0.697385 2_1:+77354294 Msa0226890:CDS
GGACTCCAATCCATACCAAG+AGG 0.699795 2_1:-77352609 None:intergenic
GTTGCAGCAAGAGCTAGATG+TGG 0.705517 2_1:+77356277 Msa0226890:CDS
AGAAAATGTTGTGGATGCTG+CGG 0.718543 2_1:+77357647 Msa0226890:CDS
TTGCGGACAACTTAACATCG+GGG 0.748961 2_1:+77354206 Msa0226890:CDS
CCTCGGATTTGAGAGCACGG+CGG 0.772593 2_1:-77357782 None:intergenic
TTTCTGAGCTGGGAACACCG+AGG 0.811651 2_1:+77354155 Msa0226890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTAATGAAAAAAAAAAA+AGG - chr2_1:77352806-77352825 None:intergenic 10.0%
!!! GTATAAAACTTTTTTTATTT+AGG + chr2_1:77353486-77353505 Msa0226890:intron 10.0%
!!! TTCTCTTTTTTTTTTTTAAA+TGG + chr2_1:77354741-77354760 Msa0226890:intron 10.0%
!! GTATTAACAATTATTAAATT+TGG - chr2_1:77354957-77354976 None:intergenic 10.0%
!!! TTCAAAATATTTTCATTTTA+AGG + chr2_1:77355465-77355484 Msa0226890:intron 10.0%
!!! TCAAAATATTTTCATTTTAA+GGG + chr2_1:77355466-77355485 Msa0226890:intron 10.0%
!!! TAACAATTTATTATTTTCAT+TGG + chr2_1:77357293-77357312 Msa0226890:intron 10.0%
!!! TATTATCATTATAGTTTTAC+AGG + chr2_1:77352834-77352853 Msa0226890:intron 15.0%
!! TGAAAAAAAATACAAAAACA+AGG - chr2_1:77353522-77353541 None:intergenic 15.0%
!!! TTAATTCTCAATATCTTTTT+CGG - chr2_1:77353588-77353607 None:intergenic 15.0%
!!! TTTTCTTTTCATTTTTTCAA+AGG + chr2_1:77353710-77353729 Msa0226890:intron 15.0%
!!! AAATATTATGTTTTACTTGT+AGG + chr2_1:77355954-77355973 Msa0226890:intron 15.0%
!!! TCATTATAATTTTTCACTAT+AGG - chr2_1:77356196-77356215 None:intergenic 15.0%
!! GTGAAAAATTATAATGATTT+AGG + chr2_1:77356199-77356218 Msa0226890:intron 15.0%
!!! TTTTTATATCTGCAAATATA+TGG + chr2_1:77357595-77357614 Msa0226890:intron 15.0%
!!! TTTTATATCTGCAAATATAT+GGG + chr2_1:77357596-77357615 Msa0226890:intron 15.0%
!! TATCATCATCAATCATAAAT+TGG - chr2_1:77352362-77352381 None:intergenic 20.0%
!!! ATGATTGATGATGATATAAA+AGG + chr2_1:77352366-77352385 Msa0226890:CDS 20.0%
!!! TATTTTTTTTCAGCTGAAAA+AGG + chr2_1:77353530-77353549 Msa0226890:CDS 20.0%
!! TGAAAATTAACAACTAACAT+TGG - chr2_1:77354767-77354786 None:intergenic 20.0%
!!! GTATATTAGGTGTTTTAAAA+TGG + chr2_1:77355297-77355316 Msa0226890:intron 20.0%
!!! TTGAACATATGACAATATTT+TGG - chr2_1:77355550-77355569 None:intergenic 20.0%
!! AAACAGATACAATCAATTAT+TGG - chr2_1:77355754-77355773 None:intergenic 20.0%
!! TATAAATGAATTAGAAGAAG+CGG - chr2_1:77355818-77355837 None:intergenic 20.0%
!!! TTATAATGATTTAGGATGAA+AGG + chr2_1:77356207-77356226 Msa0226890:intron 20.0%
!!! AATCGGATTTTCAAATTTTT+AGG - chr2_1:77356693-77356712 None:intergenic 20.0%
!! AACAAAAACATGAAGTTAAT+CGG - chr2_1:77356710-77356729 None:intergenic 20.0%
!!! TTTGTGCGAAAAATATTTTT+CGG + chr2_1:77356976-77356995 Msa0226890:intron 20.0%
!! TAATAAGCTTGGTAAAAATA+GGG - chr2_1:77357109-77357128 None:intergenic 20.0%
!!! TTCTAAAATAAGTAGAATAG+GGG - chr2_1:77357243-77357262 None:intergenic 20.0%
!!! GTTCTAAAATAAGTAGAATA+GGG - chr2_1:77357244-77357263 None:intergenic 20.0%
!!! AGTTCTAAAATAAGTAGAAT+AGG - chr2_1:77357245-77357264 None:intergenic 20.0%
!!! TTATTTTAGAACTCCTATTT+TGG + chr2_1:77357252-77357271 Msa0226890:intron 20.0%
!!! TTAGAAAAGTTTTTTGCAAA+TGG - chr2_1:77357827-77357846 None:intergenic 20.0%
!!! TAAGTTTGTTAAGACTGTTT+AGG + chr2_1:77352988-77353007 Msa0226890:intron 25.0%
! AAGTTAATTGTGTGTGAATA+AGG - chr2_1:77353033-77353052 None:intergenic 25.0%
! TTCACACACAATTAACTTAA+AGG + chr2_1:77353035-77353054 Msa0226890:intron 25.0%
! TCACACACAATTAACTTAAA+GGG + chr2_1:77353036-77353055 Msa0226890:intron 25.0%
! TTATTACTTGTGAGACTATT+TGG + chr2_1:77353198-77353217 Msa0226890:intron 25.0%
! TATTACTTGTGAGACTATTT+GGG + chr2_1:77353199-77353218 Msa0226890:intron 25.0%
! TTTGATAAGTTATCTTGAAG+AGG - chr2_1:77353285-77353304 None:intergenic 25.0%
!! AATTAAAAGTGAAGCTCTTT+TGG + chr2_1:77353602-77353621 Msa0226890:CDS 25.0%
! ACGTATGTTGAATATCATAA+AGG - chr2_1:77353956-77353975 None:intergenic 25.0%
!!! TTTGTTATTGACTTTTCCAT+TGG + chr2_1:77354510-77354529 Msa0226890:CDS 25.0%
! TTGAAACCAATAAAAGTTAG+AGG - chr2_1:77354794-77354813 None:intergenic 25.0%
! TTAAATCTGCATAAGTTGTA+TGG + chr2_1:77354823-77354842 Msa0226890:intron 25.0%
! CAGGTACAAAATTAAATCTA+TGG - chr2_1:77354902-77354921 None:intergenic 25.0%
!! ATTTGCTACAAATGAGTATT+TGG - chr2_1:77355004-77355023 None:intergenic 25.0%
!!! GAATATTTGTTATTGTCCAT+AGG + chr2_1:77355275-77355294 Msa0226890:intron 25.0%
! TTATTGTCCATAGGTATATT+AGG + chr2_1:77355284-77355303 Msa0226890:intron 25.0%
! TAAAACACCTAATATACCTA+TGG - chr2_1:77355294-77355313 None:intergenic 25.0%
! AAGGGCTAAATATGTATTAT+AGG + chr2_1:77355484-77355503 Msa0226890:intron 25.0%
! CATTTCATATTCATAATGTG+GGG - chr2_1:77355615-77355634 None:intergenic 25.0%
! CCATTTCATATTCATAATGT+GGG - chr2_1:77355616-77355635 None:intergenic 25.0%
! ACCATTTCATATTCATAATG+TGG - chr2_1:77355617-77355636 None:intergenic 25.0%
! AGATACAATCAATTATTGGA+AGG - chr2_1:77355750-77355769 None:intergenic 25.0%
! AACAAGTTTAATCTCAATGA+TGG + chr2_1:77355880-77355899 Msa0226890:intron 25.0%
! AATGAAATTGAAGTTTGAAG+AGG + chr2_1:77356119-77356138 Msa0226890:CDS 25.0%
!! TAACATCTCTTTTCACATTT+TGG + chr2_1:77356167-77356186 Msa0226890:intron 25.0%
! AGATATGAAGTTGCTAATAA+AGG + chr2_1:77356361-77356380 Msa0226890:CDS 25.0%
! ACATTTATCTAAACTAGACT+GGG + chr2_1:77356516-77356535 Msa0226890:intron 25.0%
!!! GGTTTAGATTTTCTGTTTTT+AGG + chr2_1:77356664-77356683 Msa0226890:intron 25.0%
!! TGTAAATTTTCTTGTTGAAG+AGG + chr2_1:77356852-77356871 Msa0226890:CDS 25.0%
!! TTGTGCGAAAAATATTTTTC+GGG + chr2_1:77356977-77356996 Msa0226890:intron 25.0%
!!! AGGTTTGTTTCTTTTGTTTT+TGG + chr2_1:77357033-77357052 Msa0226890:intron 25.0%
!!! GGTTTGTTTCTTTTGTTTTT+GGG + chr2_1:77357034-77357053 Msa0226890:intron 25.0%
! AATAAGCTTGGTAAAAATAG+GGG - chr2_1:77357108-77357127 None:intergenic 25.0%
! CTAATAAGCTTGGTAAAAAT+AGG - chr2_1:77357110-77357129 None:intergenic 25.0%
! GAGAAAGTAAAGATTGTAAT+CGG - chr2_1:77357170-77357189 None:intergenic 25.0%
! GATTACAATCTTTACTTTCT+CGG + chr2_1:77357169-77357188 Msa0226890:intron 25.0%
! ATTACAATCTTTACTTTCTC+GGG + chr2_1:77357170-77357189 Msa0226890:intron 25.0%
! CAAATTATCATAGATTCATG+CGG - chr2_1:77357403-77357422 None:intergenic 25.0%
! TGAAAAAACTCAAATTTGAC+AGG - chr2_1:77357440-77357459 None:intergenic 25.0%
! AAATTTCAGAATCTTGTCAT+AGG - chr2_1:77357490-77357509 None:intergenic 25.0%
! ATAAAAAACTGTGAGTAAAG+AGG - chr2_1:77357582-77357601 None:intergenic 25.0%
TATAACTATCTCAATCCACT+CGG + chr2_1:77352552-77352571 Msa0226890:CDS 30.0%
!! TAGTTTTACAGGATTCAAGT+TGG + chr2_1:77352845-77352864 Msa0226890:intron 30.0%
TTAATTGTGTGTGAATAAGG+TGG - chr2_1:77353030-77353049 None:intergenic 30.0%
TTGTATCATACAAGCATGTT+TGG - chr2_1:77353413-77353432 None:intergenic 30.0%
!!! ATTCTCAATATCTTTTTCGG+TGG - chr2_1:77353585-77353604 None:intergenic 30.0%
AAGAAGCAAAAGATGAAAAG+AGG - chr2_1:77353641-77353660 None:intergenic 30.0%
!!! TTGTTTTTTTTCTTCAGCGA+CGG + chr2_1:77353760-77353779 Msa0226890:intron 30.0%
ACTTCTCGATACAGAAATAT+CGG - chr2_1:77353820-77353839 None:intergenic 30.0%
! CTTTCATATTTTTCATGCCT+CGG - chr2_1:77354175-77354194 None:intergenic 30.0%
! TGAAAGTTCTGATCATATTG+CGG + chr2_1:77354189-77354208 Msa0226890:CDS 30.0%
TATCCTCATTAGTAAAGTCT+TGG - chr2_1:77354282-77354301 None:intergenic 30.0%
AGCAAGATTGAATCAAGAAA+TGG + chr2_1:77354615-77354634 Msa0226890:CDS 30.0%
AAGACAATATCTTGTGACAA+AGG + chr2_1:77354642-77354661 Msa0226890:CDS 30.0%
! CATTTGCCTCTAACTTTTAT+TGG + chr2_1:77354785-77354804 Msa0226890:intron 30.0%
TGAAAAATCATACTTTGCCA+AGG - chr2_1:77354856-77354875 None:intergenic 30.0%
ATTTATTGAATGCGAACATC+AGG - chr2_1:77354921-77354940 None:intergenic 30.0%
GCATTCAATAAATTACCATC+AGG + chr2_1:77354928-77354947 Msa0226890:intron 30.0%
! TATTAAATTTGGCTTCCTGA+TGG - chr2_1:77354946-77354965 None:intergenic 30.0%
! TTCATGAAACTGTCATTTAG+TGG + chr2_1:77355023-77355042 Msa0226890:intron 30.0%
!!! ATCATGGTATTGGTTCATTT+TGG + chr2_1:77355057-77355076 Msa0226890:intron 30.0%
CCCACATTATGAATATGAAA+TGG + chr2_1:77355613-77355632 Msa0226890:intron 30.0%
TTACTTGTAGGTCAAAGATT+TGG + chr2_1:77355966-77355985 Msa0226890:intron 30.0%
! TTGTGTAAACCTTTCCTTTT+CGG - chr2_1:77356052-77356071 None:intergenic 30.0%
GTAACATATAAGAACCAGAA+AGG - chr2_1:77356474-77356493 None:intergenic 30.0%
GACATTTATCTAAACTAGAC+TGG + chr2_1:77356515-77356534 Msa0226890:intron 30.0%
ATTCTTGATCCTTCTACTAA+AGG + chr2_1:77356634-77356653 Msa0226890:intron 30.0%
!!! CCATTTTTTCCTTTAGTAGA+AGG - chr2_1:77356646-77356665 None:intergenic 30.0%
CCTTCTACTAAAGGAAAAAA+TGG + chr2_1:77356643-77356662 Msa0226890:intron 30.0%
! TGTGCGAAAAATATTTTTCG+GGG + chr2_1:77356978-77356997 Msa0226890:intron 30.0%
!!! TTGTTTCTTTTGTTTTTGGG+TGG + chr2_1:77357037-77357056 Msa0226890:intron 30.0%
!!! TGTTTTTGGGTGGTTTTTTA+AGG + chr2_1:77357047-77357066 Msa0226890:intron 30.0%
!!! GTTTTTGGGTGGTTTTTTAA+GGG + chr2_1:77357048-77357067 Msa0226890:intron 30.0%
!!! TTTTTGGGTGGTTTTTTAAG+GGG + chr2_1:77357049-77357068 Msa0226890:intron 30.0%
TTGGTAAAAATAGGGGAAAT+CGG - chr2_1:77357101-77357120 None:intergenic 30.0%
CAGAGTGTAATATCCAAAAT+AGG - chr2_1:77357268-77357287 None:intergenic 30.0%
AGAGTAACACAATTGATGTA+GGG + chr2_1:77357357-77357376 Msa0226890:intron 30.0%
GAATCTTGTCATAGGAAAAT+TGG - chr2_1:77357482-77357501 None:intergenic 30.0%
TTCACCTAGCAATTATCATT+TGG + chr2_1:77357508-77357527 Msa0226890:intron 30.0%
TCACCTAGCAATTATCATTT+GGG + chr2_1:77357509-77357528 Msa0226890:intron 30.0%
ACAAGATGTAGAAAATGTTG+TGG + chr2_1:77357638-77357657 Msa0226890:CDS 30.0%
TATACAACTACAGATGATAC+TGG + chr2_1:77357675-77357694 Msa0226890:CDS 30.0%
ATACAACTACAGATGATACT+GGG + chr2_1:77357676-77357695 Msa0226890:CDS 30.0%
GGACAACTAATGAAGAATTA+AGG + chr2_1:77357697-77357716 Msa0226890:CDS 30.0%
TGAAGAATTAAGGAAAATGC+TGG + chr2_1:77357707-77357726 Msa0226890:CDS 30.0%
!! ATTGACTTGTTTCCTTAAAC+TGG - chr2_1:77357754-77357773 None:intergenic 30.0%
GTAACCTAGTAACATACATA+GGG - chr2_1:77357897-77357916 None:intergenic 30.0%
AGTAACCTAGTAACATACAT+AGG - chr2_1:77357898-77357917 None:intergenic 30.0%
!!! ACTTTTTTTTGAGAGCTACT+AGG + chr2_1:77357915-77357934 Msa0226890:three_prime_UTR 30.0%
ATCGAGTATAGTTAAATTGC+CGG + chr2_1:77357964-77357983 Msa0226890:three_prime_UTR 30.0%
! TGCTTGCTAAATGTGATTAT+TGG - chr2_1:77358030-77358049 None:intergenic 30.0%
GTTTGAAGAAACAAACATCA+TGG - chr2_1:77358059-77358078 None:intergenic 30.0%
GAAAGAAAAGATGTGAGTGT+TGG + chr2_1:77352405-77352424 Msa0226890:CDS 35.0%
GGTGATAAATCATATGCGTA+TGG - chr2_1:77352468-77352487 None:intergenic 35.0%
TAGCTGATATCGTTCATCAA+AGG - chr2_1:77352489-77352508 None:intergenic 35.0%
TCTTCATCTTGTTCAGGATA+TGG - chr2_1:77352522-77352541 None:intergenic 35.0%
TCATCATCTTCATCTTGTTC+AGG - chr2_1:77352528-77352547 None:intergenic 35.0%
! AGTTTAGTTTAGTACCACGA+CGG - chr2_1:77352768-77352787 None:intergenic 35.0%
TAGTAGTGGTAATAGCTTGA+GGG - chr2_1:77352880-77352899 None:intergenic 35.0%
AAAAACAAGCTGATCCAAAC+AGG + chr2_1:77353171-77353190 Msa0226890:intron 35.0%
AAAACAAGCTGATCCAAACA+GGG + chr2_1:77353172-77353191 Msa0226890:intron 35.0%
CAAGTAATAATGACCCTGTT+TGG - chr2_1:77353188-77353207 None:intergenic 35.0%
TATACGCGCTTATGTTGATA+AGG + chr2_1:77353353-77353372 Msa0226890:intron 35.0%
! ATACGCGCTTATGTTGATAA+GGG + chr2_1:77353354-77353373 Msa0226890:intron 35.0%
AACTCAAGAAAAATTGCTGC+TGG - chr2_1:77353846-77353865 None:intergenic 35.0%
! TTCATTTTGCGTCTGAAGAA+AGG + chr2_1:77353918-77353937 Msa0226890:intron 35.0%
TATTGCGGACAACTTAACAT+CGG + chr2_1:77354204-77354223 Msa0226890:CDS 35.0%
TGATCAACACTTGTTTCAGT+TGG - chr2_1:77354247-77354266 None:intergenic 35.0%
TGAGGATAATAGTACAGACA+AGG + chr2_1:77354294-77354313 Msa0226890:CDS 35.0%
! CTTCCAATGTTTTCTGTTGA+CGG - chr2_1:77354400-77354419 None:intergenic 35.0%
TAACAAATCTGAGTTTCCAG+AGG - chr2_1:77354497-77354516 None:intergenic 35.0%
AAAAGAGAAGAGAGAGAGAA+AGG - chr2_1:77354730-77354749 None:intergenic 35.0%
! AGTTGTATGGTGTTTTTCCT+TGG + chr2_1:77354836-77354855 Msa0226890:intron 35.0%
TTAATACCCTGTAGTCTGTA+TGG + chr2_1:77354970-77354989 Msa0226890:intron 35.0%
CACAGTATCAATCATGGTAT+TGG + chr2_1:77355047-77355066 Msa0226890:intron 35.0%
GATACTGTGAACTTCTTGTA+TGG - chr2_1:77355341-77355360 None:intergenic 35.0%
TTGTCAAATGCAGAGAAAAC+AGG - chr2_1:77355399-77355418 None:intergenic 35.0%
! TTGTCATATGTTCAAGTTCG+AGG + chr2_1:77355555-77355574 Msa0226890:intron 35.0%
GTAACTGATGAATGTGTTCA+AGG + chr2_1:77355586-77355605 Msa0226890:intron 35.0%
!!! TGTATCTGTTTTTGCAAGAG+AGG + chr2_1:77355763-77355782 Msa0226890:intron 35.0%
!!! CTGTTTTAACCGAAAAGGAA+AGG + chr2_1:77356040-77356059 Msa0226890:CDS 35.0%
AAAGGTTTACACAAATGCAG+TGG + chr2_1:77356058-77356077 Msa0226890:CDS 35.0%
AAGGTTTACACAAATGCAGT+GGG + chr2_1:77356059-77356078 Msa0226890:CDS 35.0%
TCAATTTCATTTCTGTCTCG+AGG - chr2_1:77356110-77356129 None:intergenic 35.0%
! CATCTCTTTTCACATTTTGG+TGG + chr2_1:77356170-77356189 Msa0226890:intron 35.0%
AAAAAGTAGATGTGGAGGTA+TGG + chr2_1:77356447-77356466 Msa0226890:intron 35.0%
AACTTAAACACGTAGTCAGA+TGG - chr2_1:77356560-77356579 None:intergenic 35.0%
TATTCAGAGAACTCTTCAGA+AGG + chr2_1:77356741-77356760 Msa0226890:intron 35.0%
! AACAAATCCAAAGCATCAGA+TGG - chr2_1:77356904-77356923 None:intergenic 35.0%
TGTTAGCAACATCCGATAAT+CGG + chr2_1:77356920-77356939 Msa0226890:CDS 35.0%
!!! AAAATATTTTTCGGGGCACT+TGG + chr2_1:77356985-77357004 Msa0226890:intron 35.0%
GAATCAGTACTTGCTTGTAT+AGG + chr2_1:77357013-77357032 Msa0226890:intron 35.0%
GCTGCCTTTACAATCTATAA+CGG + chr2_1:77357217-77357236 Msa0226890:intron 35.0%
TTTCACTAGAACCATGCAAA+AGG + chr2_1:77357323-77357342 Msa0226890:intron 35.0%
! CTACATCAATTGTGTTACTC+TGG - chr2_1:77357358-77357377 None:intergenic 35.0%
CAGAGTAACACAATTGATGT+AGG + chr2_1:77357356-77357375 Msa0226890:intron 35.0%
CAACCCAAATGATAATTGCT+AGG - chr2_1:77357515-77357534 None:intergenic 35.0%
TAAAGAGGACACCATATAGA+AGG - chr2_1:77357567-77357586 None:intergenic 35.0%
ATCTGCAAATATATGGGATC+AGG + chr2_1:77357602-77357621 Msa0226890:intron 35.0%
TTGTAGACAATGCCAGTTTA+AGG + chr2_1:77357739-77357758 Msa0226890:CDS 35.0%
TGTACCCTATGTATGTTACT+AGG + chr2_1:77357890-77357909 Msa0226890:three_prime_UTR 35.0%
ATTCGCACAGAATTCTATTC+CGG - chr2_1:77357986-77358005 None:intergenic 35.0%
GAAGAAACAAACATCATGGT+TGG - chr2_1:77358055-77358074 None:intergenic 35.0%
!! AGAAAAGATGTGAGTGTTGG+CGG + chr2_1:77352408-77352427 Msa0226890:CDS 40.0%
!! AGGAGAAGGTGTTTCAGAAA+CGG - chr2_1:77352586-77352605 None:intergenic 40.0%
AACAAGAAGCCAAGAAGGAA+TGG - chr2_1:77352711-77352730 None:intergenic 40.0%
AGAAGAAGAAGAAGAAGGAG+AGG - chr2_1:77352741-77352760 None:intergenic 40.0%
GGATCAGAAGAAGAAGAAGA+AGG - chr2_1:77352746-77352765 None:intergenic 40.0%
! GTTTAGTTTAGTACCACGAC+GGG - chr2_1:77352767-77352786 None:intergenic 40.0%
AGTAGTGGTAATAGCTTGAG+GGG - chr2_1:77352879-77352898 None:intergenic 40.0%
CTAGTAGTGGTAATAGCTTG+AGG - chr2_1:77352881-77352900 None:intergenic 40.0%
GCGCAATATGATTCTAGTAG+TGG - chr2_1:77352894-77352913 None:intergenic 40.0%
!!! CTCAATATCTTTTTCGGTGG+TGG - chr2_1:77353582-77353601 None:intergenic 40.0%
!! AAGTGAAGCTCTTTTGGAAG+AGG + chr2_1:77353608-77353627 Msa0226890:CDS 40.0%
! GACGTCTGTTCATCTGAAAT+AGG - chr2_1:77354029-77354048 None:intergenic 40.0%
ATTTCAGATGAACAGACGTC+TGG + chr2_1:77354029-77354048 Msa0226890:intron 40.0%
CATACCATGTGAACCATCTT+GGG - chr2_1:77354078-77354097 None:intergenic 40.0%
ACATACCATGTGAACCATCT+TGG - chr2_1:77354079-77354098 None:intergenic 40.0%
ACATGGTATGTTAAAGCTCG+TGG + chr2_1:77354088-77354107 Msa0226890:intron 40.0%
ATTGCGGACAACTTAACATC+GGG + chr2_1:77354205-77354224 Msa0226890:CDS 40.0%
CTCATTAGTAAAGTCTTGGC+TGG - chr2_1:77354278-77354297 None:intergenic 40.0%
CAGCCAAGACTTTACTAATG+AGG + chr2_1:77354276-77354295 Msa0226890:CDS 40.0%
! CTTTTGACATGAGCATTAGC+TGG - chr2_1:77354376-77354395 None:intergenic 40.0%
AGACCGTCAACAGAAAACAT+TGG + chr2_1:77354394-77354413 Msa0226890:CDS 40.0%
GATACACCATACAGACTACA+GGG - chr2_1:77354979-77354998 None:intergenic 40.0%
TGATACACCATACAGACTAC+AGG - chr2_1:77354980-77354999 None:intergenic 40.0%
AGTGGTCACAGTATCAATCA+TGG + chr2_1:77355041-77355060 Msa0226890:intron 40.0%
! CATTTTGGATCAGACTTTCG+TGG + chr2_1:77355072-77355091 Msa0226890:intron 40.0%
CAGACTTTCGTGGTTCATTA+TGG + chr2_1:77355082-77355101 Msa0226890:intron 40.0%
CTAAGTCAGTGCTCAGTTAA+TGG + chr2_1:77355114-77355133 Msa0226890:intron 40.0%
TGCGAACTTGTGAAGTTCTT+AGG + chr2_1:77355152-77355171 Msa0226890:intron 40.0%
GTTGTTTACAGAACTAGCTC+AGG + chr2_1:77355216-77355235 Msa0226890:intron 40.0%
GAAGTTCACAGTATCACATG+CGG + chr2_1:77355346-77355365 Msa0226890:intron 40.0%
AAGTTCACAGTATCACATGC+GGG + chr2_1:77355347-77355366 Msa0226890:intron 40.0%
! TCATATGTTCAAGTTCGAGG+AGG + chr2_1:77355558-77355577 Msa0226890:intron 40.0%
!!! ATCTGTTTTTGCAAGAGAGG+AGG + chr2_1:77355766-77355785 Msa0226890:intron 40.0%
!!! TCTGTTTTTGCAAGAGAGGA+GGG + chr2_1:77355767-77355786 Msa0226890:intron 40.0%
TACACAAATGCAGTGGGATA+TGG + chr2_1:77356065-77356084 Msa0226890:CDS 40.0%
TTAGGATGAAAGGTTGCTAG+CGG + chr2_1:77356217-77356236 Msa0226890:intron 40.0%
!! TACAAAAGCATCCGTTGTTC+AGG + chr2_1:77356244-77356263 Msa0226890:CDS 40.0%
CATTTGCTTCTCCTGAACAA+CGG - chr2_1:77356258-77356277 None:intergenic 40.0%
TTCTAACTGAGAGCTTCTGA+GGG - chr2_1:77356396-77356415 None:intergenic 40.0%
GATGGAGGAAAAAGTAGATG+TGG + chr2_1:77356439-77356458 Msa0226890:CDS 40.0%
GACTGGGAAAGTAATTTGAC+TGG + chr2_1:77356532-77356551 Msa0226890:intron 40.0%
GAGAACTCTTCAGAAGGAAA+AGG + chr2_1:77356747-77356766 Msa0226890:intron 40.0%
TACTTCACCATCTGATGCTT+TGG + chr2_1:77356894-77356913 Msa0226890:CDS 40.0%
CAAGAGACCAATCCGATTAT+CGG - chr2_1:77356935-77356954 None:intergenic 40.0%
! TTTTTGTCGAGCCAGTGTTT+AGG + chr2_1:77357072-77357091 Msa0226890:intron 40.0%
GCAAGATGCACTAATAAGCT+TGG - chr2_1:77357120-77357139 None:intergenic 40.0%
GCTTATTAGTGCATCTTGCA+CGG + chr2_1:77357121-77357140 Msa0226890:intron 40.0%
CTTATTAGTGCATCTTGCAC+GGG + chr2_1:77357122-77357141 Msa0226890:intron 40.0%
!!! TGTAAAGGCAGCTTGTTTTG+CGG - chr2_1:77357209-77357228 None:intergenic 40.0%
ACTAGAACCATGCAAAAGGA+CGG + chr2_1:77357327-77357346 Msa0226890:intron 40.0%
TAGGAAAATTGGAGTGTGTC+TGG - chr2_1:77357471-77357490 None:intergenic 40.0%
ACACCATATAGAAGGCTAAG+GGG - chr2_1:77357559-77357578 None:intergenic 40.0%
GACACCATATAGAAGGCTAA+GGG - chr2_1:77357560-77357579 None:intergenic 40.0%
AGAAAATGTTGTGGATGCTG+CGG + chr2_1:77357647-77357666 Msa0226890:CDS 40.0%
TTCATCTTCCTCATTCTCCT+CGG - chr2_1:77357802-77357821 None:intergenic 40.0%
ATACCAAGAGGAAGAGGAGA+AGG - chr2_1:77352600-77352619 None:intergenic 45.0%
TTCTCCTCTTCCTCTTGGTA+TGG + chr2_1:77352599-77352618 Msa0226890:CDS 45.0%
CAATCCATACCAAGAGGAAG+AGG - chr2_1:77352606-77352625 None:intergenic 45.0%
CTCTTCCTCTTGGTATGGAT+TGG + chr2_1:77352604-77352623 Msa0226890:CDS 45.0%
! AAGAGGAGAAGAAGAGGTGT+GGG - chr2_1:77352673-77352692 None:intergenic 45.0%
AAGTCCAAGAGGAGAAGAAG+AGG - chr2_1:77352679-77352698 None:intergenic 45.0%
TCTCTTCCACCATTCCTTCT+TGG + chr2_1:77352699-77352718 Msa0226890:CDS 45.0%
AAGAAGCCAAGAAGGAATGG+TGG - chr2_1:77352708-77352727 None:intergenic 45.0%
TGAGGAACAAGAAGCCAAGA+AGG - chr2_1:77352716-77352735 None:intergenic 45.0%
GAAGAAGAAGGAGAGGATTG+AGG - chr2_1:77352734-77352753 None:intergenic 45.0%
GACGGCGTTTATTAGAGGAT+TGG + chr2_1:77353778-77353797 Msa0226890:CDS 45.0%
GTGGTACTACACCATCACAT+AGG + chr2_1:77354051-77354070 Msa0226890:intron 45.0%
TCATCTGCTGCATCTGTTTC+TGG + chr2_1:77354112-77354131 Msa0226890:CDS 45.0%
TTGCGGACAACTTAACATCG+GGG + chr2_1:77354206-77354225 Msa0226890:CDS 45.0%
GACAAGGTCACTGAGAATTC+TGG + chr2_1:77354310-77354329 Msa0226890:CDS 45.0%
ACTATAGCTCTTCGCCTAGA+TGG + chr2_1:77354337-77354356 Msa0226890:CDS 45.0%
AGCATTAGCTGGTGTGAAGT+CGG - chr2_1:77354365-77354384 None:intergenic 45.0%
AGCTGTGTCAACTTTGCTTC+AGG + chr2_1:77354438-77354457 Msa0226890:CDS 45.0%
ATGTTTCGCATGACCTTCCT+GGG + chr2_1:77354461-77354480 Msa0226890:CDS 45.0%
CTGAGTTTCCAGAGGATACA+TGG - chr2_1:77354489-77354508 None:intergenic 45.0%
! AACTTGTGTCGCTCATCCAA+TGG - chr2_1:77354529-77354548 None:intergenic 45.0%
!! TTCAACATCCGTTTTTGCCG+TGG - chr2_1:77354587-77354606 None:intergenic 45.0%
! ACAGAACTAGCTCAGGCTTT+TGG + chr2_1:77355223-77355242 Msa0226890:intron 45.0%
GCGGGATTCAGCTATACATA+AGG + chr2_1:77355365-77355384 Msa0226890:intron 45.0%
! TGTTCAAGTTCGAGGAGGAA+AGG + chr2_1:77355563-77355582 Msa0226890:intron 45.0%
! GTTCAAGTTCGAGGAGGAAA+GGG + chr2_1:77355564-77355583 Msa0226890:intron 45.0%
GATAAGTTTCAGCACGCAAG+AGG - chr2_1:77355688-77355707 None:intergenic 45.0%
!!! GCAGGCTGTTTTAACCGAAA+AGG + chr2_1:77356035-77356054 Msa0226890:CDS 45.0%
ACAAATGCAGTGGGATATGG+AGG + chr2_1:77356068-77356087 Msa0226890:CDS 45.0%
AGTGGGATATGGAGGAACTT+CGG + chr2_1:77356076-77356095 Msa0226890:CDS 45.0%
GTTCTAACTGAGAGCTTCTG+AGG - chr2_1:77356397-77356416 None:intergenic 45.0%
GGAGGAAAAAGTAGATGTGG+AGG + chr2_1:77356442-77356461 Msa0226890:CDS 45.0%
AGTGTGCAATCCTTCAGAAG+AGG + chr2_1:77356815-77356834 Msa0226890:CDS 45.0%
ACTCTTGAAGCCTCTTCTGA+AGG - chr2_1:77356828-77356847 None:intergenic 45.0%
GCAACATCCGATAATCGGAT+TGG + chr2_1:77356925-77356944 Msa0226890:CDS 45.0%
GAAATCGGTTGCCTAAACAC+TGG - chr2_1:77357086-77357105 None:intergenic 45.0%
GGGGCCGTTATAGATTGTAA+AGG - chr2_1:77357224-77357243 None:intergenic 45.0%
GGACACCATATAGAAGGCTA+AGG - chr2_1:77357561-77357580 None:intergenic 45.0%
TCTCAAATCCGAGGAGAATG+AGG + chr2_1:77357791-77357810 Msa0226890:CDS 45.0%
!! AGATGTGAGTGTTGGCGGAA+CGG + chr2_1:77352413-77352432 Msa0226890:CDS 50.0%
!! CGGAAGGAAGAGTGTTGTGT+TGG + chr2_1:77352433-77352452 Msa0226890:CDS 50.0%
ACACCTTCTCCTCTTCCTCT+TGG + chr2_1:77352594-77352613 Msa0226890:CDS 50.0%
GGACTCCAATCCATACCAAG+AGG - chr2_1:77352612-77352631 None:intergenic 50.0%
CCTCCACCACCTAATTGGAA+CGG + chr2_1:77352630-77352649 Msa0226890:CDS 50.0%
! AGAGGAGAAGAAGAGGTGTG+GGG - chr2_1:77352672-77352691 None:intergenic 50.0%
CAAGAGGAGAAGAAGAGGTG+TGG - chr2_1:77352674-77352693 None:intergenic 50.0%
CACACCTCTTCTTCTCCTCT+TGG + chr2_1:77352672-77352691 Msa0226890:CDS 50.0%
GGTGGAAGAGAAAGTCCAAG+AGG - chr2_1:77352690-77352709 None:intergenic 50.0%
TTCTTCTTCTGATCCCGTCG+TGG + chr2_1:77352751-77352770 Msa0226890:CDS 50.0%
GGCGAAGGCAGGTATTTCAT+GGG - chr2_1:77353561-77353580 None:intergenic 50.0%
TGGCGAAGGCAGGTATTTCA+TGG - chr2_1:77353562-77353581 None:intergenic 50.0%
!!! ATCTTTTTCGGTGGTGGCGA+AGG - chr2_1:77353576-77353595 None:intergenic 50.0%
TCAGCGACGGCGTTTATTAG+AGG + chr2_1:77353773-77353792 Msa0226890:intron 50.0%
TCAGATGAACAGACGTCTGG+TGG + chr2_1:77354032-77354051 Msa0226890:intron 50.0%
CCATCTTGGGTCCTATGTGA+TGG - chr2_1:77354065-77354084 None:intergenic 50.0%
CCATCACATAGGACCCAAGA+TGG + chr2_1:77354062-77354081 Msa0226890:intron 50.0%
AGGACCCAAGATGGTTCACA+TGG + chr2_1:77354071-77354090 Msa0226890:intron 50.0%
! TGGTGATGATACCCCTTCTG+AGG + chr2_1:77354132-77354151 Msa0226890:CDS 50.0%
CAGCTCAGAAACCTCAGAAG+GGG - chr2_1:77354146-77354165 None:intergenic 50.0%
CCAGCTCAGAAACCTCAGAA+GGG - chr2_1:77354147-77354166 None:intergenic 50.0%
!! CCTTCTGAGGTTTCTGAGCT+GGG + chr2_1:77354145-77354164 Msa0226890:CDS 50.0%
GATGTTTCGCATGACCTTCC+TGG + chr2_1:77354460-77354479 Msa0226890:CDS 50.0%
! GAGACTAGCCACGGCAAAAA+CGG + chr2_1:77354576-77354595 Msa0226890:CDS 50.0%
! GAACTAGCTCAGGCTTTTGG+AGG + chr2_1:77355226-77355245 Msa0226890:intron 50.0%
CTGCAGAGAAAACATGCAGC+AGG + chr2_1:77356017-77356036 Msa0226890:CDS 50.0%
GTTGCAGCAAGAGCTAGATG+TGG + chr2_1:77356277-77356296 Msa0226890:CDS 50.0%
GCAACAGCTCAGCGAATTGA+TGG + chr2_1:77356421-77356440 Msa0226890:CDS 50.0%
ACAGCTCAGCGAATTGATGG+AGG + chr2_1:77356424-77356443 Msa0226890:CDS 50.0%
! TGTGGAGGTATGGTCCTTTC+TGG + chr2_1:77356457-77356476 Msa0226890:intron 50.0%
!! GATTGGTCTCTTGCTTGCAG+AGG + chr2_1:77356942-77356961 Msa0226890:CDS 50.0%
! CTGCCCCTTAGCCTTCTATA+TGG + chr2_1:77357553-77357572 Msa0226890:intron 50.0%
AATGTTGTGGATGCTGCGGA+AGG + chr2_1:77357651-77357670 Msa0226890:CDS 50.0%
TCTCCTCGGATTTGAGAGCA+CGG - chr2_1:77357788-77357807 None:intergenic 50.0%
GGAGTCCTCCACCACCTAAT+TGG + chr2_1:77352625-77352644 Msa0226890:CDS 55.0%
! CCGTTCCAATTAGGTGGTGG+AGG - chr2_1:77352633-77352652 None:intergenic 55.0%
GGACCGTTCCAATTAGGTGG+TGG - chr2_1:77352636-77352655 None:intergenic 55.0%
GTGGGACCGTTCCAATTAGG+TGG - chr2_1:77352639-77352658 None:intergenic 55.0%
! GTGGTGGGACCGTTCCAATT+AGG - chr2_1:77352642-77352661 None:intergenic 55.0%
!! CCCTTCTGAGGTTTCTGAGC+TGG + chr2_1:77354144-77354163 Msa0226890:CDS 55.0%
CCCAGCTCAGAAACCTCAGA+AGG - chr2_1:77354148-77354167 None:intergenic 55.0%
TTTCTGAGCTGGGAACACCG+AGG + chr2_1:77354155-77354174 Msa0226890:CDS 55.0%
! GTGTGAAGTCGGCTCCATCT+AGG - chr2_1:77354354-77354373 None:intergenic 55.0%
AGGATACATGGCTCCCAGGA+AGG - chr2_1:77354477-77354496 None:intergenic 55.0%
!! CGTGGCTAGTCTCTGCTTCT+GGG - chr2_1:77354569-77354588 None:intergenic 55.0%
! CCAGAAGCAGAGACTAGCCA+CGG + chr2_1:77354567-77354586 Msa0226890:CDS 55.0%
GGGATATGGAGGAACTTCGG+AGG + chr2_1:77356079-77356098 Msa0226890:CDS 55.0%
TGCATCTTGCACGGGCTTGT+TGG + chr2_1:77357130-77357149 Msa0226890:intron 55.0%
GGGGCAGCAAGCAGTAAACA+TGG - chr2_1:77357540-77357559 None:intergenic 55.0%
ATGGGATCAGGCACAGCTCT+TGG + chr2_1:77357614-77357633 Msa0226890:intron 55.0%
!! GTGAGTGTTGGCGGAACGGA+AGG + chr2_1:77352417-77352436 Msa0226890:CDS 60.0%
GAAACGGCGTCGTTTCCGAG+TGG - chr2_1:77352570-77352589 None:intergenic 60.0%
!! TTTTCGGTGGTGGCGAAGGC+AGG - chr2_1:77353572-77353591 None:intergenic 60.0%
CCAGAGGATACATGGCTCCC+AGG - chr2_1:77354481-77354500 None:intergenic 60.0%
CCTGGGAGCCATGTATCCTC+TGG + chr2_1:77354478-77354497 Msa0226890:CDS 60.0%
!! CCGTGGCTAGTCTCTGCTTC+TGG - chr2_1:77354570-77354589 None:intergenic 60.0%
! CCTCGGATTTGAGAGCACGG+CGG - chr2_1:77357785-77357804 None:intergenic 60.0%
GGAACGGTCCCACCACTCTC+TGG + chr2_1:77352646-77352665 Msa0226890:CDS 65.0%
GTGTGGGGCCAGAGAGTGGT+GGG - chr2_1:77352657-77352676 None:intergenic 65.0%
! AGAGGTGTGGGGCCAGAGAG+TGG - chr2_1:77352661-77352680 None:intergenic 65.0%
CCGCCGTGCTCTCAAATCCG+AGG + chr2_1:77357782-77357801 Msa0226890:CDS 65.0%
GGTGTGGGGCCAGAGAGTGG+TGG - chr2_1:77352658-77352677 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 77352351 77358110 77352351 ID=Msa0226890;Name=Msa0226890
chr2_1 mRNA 77352351 77358110 77352351 ID=Msa0226890-mRNA-1;Parent=Msa0226890;Name=Msa0226890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=15|0.75|0.77|1|0.62|0.77|9|244|720
chr2_1 exon 77352351 77352772 77352351 ID=Msa0226890-mRNA-1:exon:23503;Parent=Msa0226890-mRNA-1
chr2_1 exon 77352848 77352945 77352848 ID=Msa0226890-mRNA-1:exon:23504;Parent=Msa0226890-mRNA-1
chr2_1 exon 77353508 77353629 77353508 ID=Msa0226890-mRNA-1:exon:23505;Parent=Msa0226890-mRNA-1
chr2_1 exon 77353777 77353885 77353777 ID=Msa0226890-mRNA-1:exon:23506;Parent=Msa0226890-mRNA-1
chr2_1 exon 77354104 77354663 77354104 ID=Msa0226890-mRNA-1:exon:23507;Parent=Msa0226890-mRNA-1
chr2_1 exon 77355976 77356140 77355976 ID=Msa0226890-mRNA-1:exon:23508;Parent=Msa0226890-mRNA-1
chr2_1 exon 77356221 77356463 77356221 ID=Msa0226890-mRNA-1:exon:23509;Parent=Msa0226890-mRNA-1
chr2_1 exon 77356748 77356963 77356748 ID=Msa0226890-mRNA-1:exon:23510;Parent=Msa0226890-mRNA-1
chr2_1 exon 77357624 77358110 77357624 ID=Msa0226890-mRNA-1:exon:23511;Parent=Msa0226890-mRNA-1
chr2_1 five_prime_UTR 77352351 77352365 77352351 ID=Msa0226890-mRNA-1:five_prime_utr;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77352366 77352772 77352366 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77352848 77352945 77352848 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77353508 77353629 77353508 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77353777 77353885 77353777 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77354104 77354663 77354104 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77355976 77356140 77355976 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77356221 77356463 77356221 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77356748 77356963 77356748 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 CDS 77357624 77357866 77357624 ID=Msa0226890-mRNA-1:cds;Parent=Msa0226890-mRNA-1
chr2_1 three_prime_UTR 77357867 77358110 77357867 ID=Msa0226890-mRNA-1:three_prime_utr;Parent=Msa0226890-mRNA-1
Gene Sequence

>Msa0226890

ATGATTGATGATGATATAAAAGGTGAAAAAGAAAAGAAAGAAAGAAAAGATGTGAGTGTTGGCGGAACGGAAGGAAGAGTGTTGTGTTGGAAAATGCATCCATACGCATATGATTTATCACCTTTGATGAACGATATCAGCTACACTACTTATCCATATCCTGAACAAGATGAAGATGATGATGATTATAACTATCTCAATCCACTCGGAAACGACGCCGTTTCTGAAACACCTTCTCCTCTTCCTCTTGGTATGGATTGGAGTCCTCCACCACCTAATTGGAACGGTCCCACCACTCTCTGGCCCCACACCTCTTCTTCTCCTCTTGGACTTTCTCTTCCACCATTCCTTCTTGGCTTCTTGTTCCTCAATCCTCTCCTTCTTCTTCTTCTTCTGATCCCGTCGTGTTTTACAGGATTCAAGTTGGTGTTCGATCCCCTCAAGCTATTACCACTACTAGAATCATATTGCGCAGATTCAGCGATTTTTTCACTTGTTTTCTCAAGAGTTTATTCACCTTGTTTTTGTATTTTTTTTCAGCTGAAAAAGGAATTTCCCATGAAATACCTGCCTTCGCCACCACCGAAAAAGATATTGAGAATTAAAAGTGAAGCTCTTTTGGAAGAGCGACGGCGTTTATTAGAGGATTGGATGAAAAAATTGTTATCCGATATTTCTGTATCGAGAAGTGCACCAGCAGCAATTTTTCTTGAGTTAGAAGCTGCTGCTAGAGCATCTCGTGGTTCATCTGCTGCATCTGTTTCTGGTGATGATACCCCTTCTGAGGTTTCTGAGCTGGGAACACCGAGGCATGAAAAATATGAAAGTTCTGATCATATTGCGGACAACTTAACATCGGGGCGTGACTTAATTCATCCAACTGAAACAAGTGTTGATCATGCTGCATCCAGCCAAGACTTTACTAATGAGGATAATAGTACAGACAAGGTCACTGAGAATTCTGGTGATACTATAGCTCTTCGCCTAGATGGAGCCGACTTCACACCAGCTAATGCTCATGTCAAAAGACCGTCAACAGAAAACATTGGAAGTGACTTAACGTCGAGTTCAGCTGTGTCAACTTTGCTTCAGGATGTTTCGCATGACCTTCCTGGGAGCCATGTATCCTCTGGAAACTCAGATTTGTTATTGACTTTTCCATTGGATGAGCGACACAAGTTGAACAGAATTATTAATACCCAGAAGCAGAGACTAGCCACGGCAAAAACGGATGTTGAAGATCTTGTAGCAAGATTGAATCAAGAAATGGCTGCAAGACAATATCTTGTGACAAAGGTCAAAGATTTGGAAGTTGAACTTGAAACAACTCAACTGAACTGCAGAGAAAACATGCAGCAGGCTGTTTTAACCGAAAAGGAAAGGTTTACACAAATGCAGTGGGATATGGAGGAACTTCGGAGGAAGTGCCTCGAGACAGAAATGAAATTGAAGTTTGAAGAGGATGAAAGGTTGCTAGCGGAATCTACAAAAGCATCCGTTGTTCAGGAGAAGCAAATGTTGCAGCAAGAGCTAGATGTGGCTAGAGAACAACTTAAGCACTTGCAGAAACATCATGATGAGTTTGAGATGAAATCAAAGACAGATATGAAGTTGCTAATAAAGGAAGTGAAATCCCTCAGAAGCTCTCAGTTAGAACTAAAGCAACAGCTCAGCGAATTGATGGAGGAAAAAGTAGATGTGGAGAGAACTCTTCAGAAGGAAAAGGAAAGAATACAGCTTTCACATGATGCTAATGCAAAGTTGTTGCATGAGTGTGCAATCCTTCAGAAGAGGCTTCAAGAGTGCAGTGTAAATTTTCTTGTTGAAGAGGAAGATAAACTAAATGTTGATACTTCACCATCTGATGCTTTGGATTTGTTAGCAACATCCGATAATCGGATTGGTCTCTTGCTTGCAGAGGCACAGCTCTTGGCACAAGATGTAGAAAATGTTGTGGATGCTGCGGAAGGATATACAACTACAGATGATACTGGGACAACTAATGAAGAATTAAGGAAAATGCTGGCTAATATTTTTGTAGACAATGCCAGTTTAAGGAAACAAGTCAATTCTGTTATCCGCCGTGCTCTCAAATCCGAGGAGAATGAGGAAGATGAAATCCATTTGCAAAAAACTTTTCTAAGCAAGTTCTTAGAGAGATAA

Protein sequence

>Msa0226890

MIDDDIKGEKEKKERKDVSVGGTEGRVLCWKMHPYAYDLSPLMNDISYTTYPYPEQDEDDDDYNYLNPLGNDAVSETPSPLPLGMDWSPPPPNWNGPTTLWPHTSSSPLGLSLPPFLLGFLFLNPLLLLLLLIPSCFTGFKLVFDPLKLLPLLESYCADSAIFSLVFSRVYSPCFCIFFQLKKEFPMKYLPSPPPKKILRIKSEALLEERRRLLEDWMKKLLSDISVSRSAPAAIFLELEAAARASRGSSAASVSGDDTPSEVSELGTPRHEKYESSDHIADNLTSGRDLIHPTETSVDHAASSQDFTNEDNSTDKVTENSGDTIALRLDGADFTPANAHVKRPSTENIGSDLTSSSAVSTLLQDVSHDLPGSHVSSGNSDLLLTFPLDERHKLNRIINTQKQRLATAKTDVEDLVARLNQEMAARQYLVTKVKDLEVELETTQLNCRENMQQAVLTEKERFTQMQWDMEELRRKCLETEMKLKFEEDERLLAESTKASVVQEKQMLQQELDVAREQLKHLQKHHDEFEMKSKTDMKLLIKEVKSLRSSQLELKQQLSELMEEKVDVERTLQKEKERIQLSHDANAKLLHECAILQKRLQECSVNFLVEEEDKLNVDTSPSDALDLLATSDNRIGLLLAEAQLLAQDVENVVDAAEGYTTTDDTGTTNEELRKMLANIFVDNASLRKQVNSVIRRALKSEENEEDEIHLQKTFLSKFLER*