AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146260 MtrunA17_Chr1g0155251 99.381 646 1 1 1 646 1 643 0.0 1313
Msa0146260 MtrunA17_Chr5g0437031 88.633 651 66 2 1 646 1 648 0.0 1113
Msa0146260 MtrunA17_Chr3g0143991 44.681 94 47 3 539 630 25 115 2.63e-11 62.4
Msa0146260 MtrunA17_Chr7g0242251 43.750 80 41 2 554 632 47 123 7.60e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146260 AT3G28730.1 75.655 649 150 6 1 645 1 645 0.0 929
Msa0146260 AT3G51880.2 45.455 88 44 2 545 631 40 124 1.43e-13 70.1
Msa0146260 AT3G51880.4 45.455 88 44 2 545 631 40 124 1.81e-13 68.9
Msa0146260 AT3G51880.5 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa0146260 AT3G51880.1 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa0146260 AT3G51880.3 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa0146260 AT1G20693.3 46.835 79 38 2 553 630 33 108 1.87e-11 62.8
Msa0146260 AT1G20693.2 46.835 79 38 2 553 630 33 108 1.90e-11 62.8
Msa0146260 AT1G20693.1 46.835 79 38 2 553 630 33 108 1.91e-11 62.8

Find 207 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGTTGCCTTAATATTAA+TGG 0.236445 1_4:+5983050 Msa0146260:exon
ATCCTTCTTTGGTTCCTTCT+TGG 0.242213 1_4:-5982462 None:intergenic
GTCCTGCCCATGCAGTTCTA+AGG 0.253010 1_4:+5981688 Msa0146260:intron
TTACCAAGCCTGGAAAATTT+AGG 0.253732 1_4:+5981216 Msa0146260:CDS
CGGGAATACCATTAATATTA+AGG 0.257243 1_4:-5983058 None:intergenic
AGAAAGAGGTCCCACAATTT+TGG 0.272086 1_4:-5983483 None:intergenic
AGAATAAGAGTGGGAGGTTT+AGG 0.278835 1_4:-5981326 None:intergenic
AGGAAATATGCTGGCTTTCA+TGG 0.282409 1_4:+5979738 Msa0146260:intron
AAAGAAGGATTTGCCTTCTA+AGG 0.286151 1_4:+5982475 Msa0146260:CDS
CCGTGATAAAATAATGTCTA+TGG 0.288359 1_4:+5980237 Msa0146260:CDS
TTTCTGTTACTGGGCGCAAT+TGG 0.293918 1_4:+5979076 Msa0146260:CDS
TTAGAAGGCAAATCCTTCTT+TGG 0.294241 1_4:-5982473 None:intergenic
CAGTTACTCCGAAGGTGTTT+TGG 0.314648 1_4:-5979038 None:intergenic
GAGAAGCAACTTTCTGTTAC+TGG 0.317850 1_4:+5979066 Msa0146260:CDS
TTCTGTTACTGGGCGCAATT+GGG 0.318614 1_4:+5979077 Msa0146260:CDS
ATTCATTTCTCTGAATATTT+CGG 0.320481 1_4:-5981574 None:intergenic
CAACCCATGAATATTGATTC+AGG 0.326088 1_4:+5983008 Msa0146260:CDS
ACACCAAGTTGATTTGTCTT+TGG 0.327527 1_4:-5978735 None:intergenic
TTCTTTGGTTCCTTCTTGGC+AGG 0.345422 1_4:-5982458 None:intergenic
TAATCCTGGAATTTCATTTA+CGG 0.345587 1_4:+5982733 Msa0146260:CDS
CTTTCTAGACCCTGCTCATC+CGG 0.350701 1_4:+5983500 Msa0146260:three_prime_UTR
TCTTGGGCTTTGGCCTCATA+AGG 0.353348 1_4:-5982936 None:intergenic
GAAGAAACAGAAGAAGAAAA+AGG 0.353379 1_4:+5982550 Msa0146260:CDS
TTTCCCTTGAAGGTTTGTTT+GGG 0.354507 1_4:-5979803 None:intergenic
ATCTCAGAAAGATTCTTTGA+TGG 0.362156 1_4:+5980058 Msa0146260:intron
AAACCAGACAGTGCCCTCTT+AGG 0.362568 1_4:-5982584 None:intergenic
GATCTTCATCACCAACAAAC+TGG 0.364930 1_4:-5980112 None:intergenic
AATGAATACCACAATTTGTA+TGG 0.365076 1_4:+5981590 Msa0146260:CDS
ATTTCCTGAATCAATATTCA+TGG 0.371026 1_4:-5983012 None:intergenic
GGTTCTCCTACTGATGATTC+TGG 0.376502 1_4:+5982297 Msa0146260:CDS
TGTCGATTTACCGTTACAAT+AGG 0.381736 1_4:-5983166 None:intergenic
GATGCTGTTGTTACATTTGA+GGG 0.383536 1_4:+5980283 Msa0146260:CDS
AGTGCCCTCTTAGGTGCATT+TGG 0.384070 1_4:-5982575 None:intergenic
TTAGTCTTGATCCTCCTATT+CGG 0.386509 1_4:+5980724 Msa0146260:CDS
TTAGAAGTAGATGCCTTAGA+AGG 0.388977 1_4:-5982488 None:intergenic
TAACGGGCTGCTTGTTTGAA+TGG 0.399124 1_4:+5983250 Msa0146260:three_prime_UTR
TGGTAAGGACACTTGATAAA+GGG 0.401651 1_4:-5983545 None:intergenic
ATTACCTGCATCACGATATG+AGG 0.403729 1_4:-5980765 None:intergenic
CTATGTCCCCGGGGTTATAA+CGG 0.410143 1_4:+5983233 Msa0146260:three_prime_UTR
GGCGAACCACACTGCTGTAC+TGG 0.410835 1_4:-5980521 None:intergenic
GTTGATAAGGCGGACATAAC+GGG 0.414369 1_4:+5978693 Msa0146260:CDS
ATCACCAACAAACTGGGTAT+TGG 0.417370 1_4:-5980105 None:intergenic
ACAATATTGCGTGGTTTGTC+CGG 0.417906 1_4:+5981185 Msa0146260:CDS
CAATACATTACCTTGGTGTA+AGG 0.418775 1_4:-5980315 None:intergenic
GTTTGAGTGTTCTATGTCCC+CGG 0.420624 1_4:+5983222 Msa0146260:three_prime_UTR
ATTCACTGGTTTCCGTGATC+AGG 0.421922 1_4:+5978785 Msa0146260:CDS
TAAAACTGCAGCCAAGCAAT+CGG 0.425637 1_4:-5983078 None:intergenic
AAAGTCTGCCCTTTCCGAAT+AGG 0.427601 1_4:-5980738 None:intergenic
ATATTGTGGTAAACACTTCA+TGG 0.428597 1_4:-5981169 None:intergenic
GGCCACACCAACAGTTGGTT+GGG 0.430545 1_4:-5981738 None:intergenic
CGGTGCCGCCACGGCCGCCG+AGG 0.437836 1_4:-5977483 None:intergenic
AGTTCCAATACCCAGTTTGT+TGG 0.440167 1_4:+5980101 Msa0146260:CDS
ACGGACGTGGGAAGAGTACT+TGG 0.442183 1_4:+5982752 Msa0146260:CDS
TTGGTAAGGACACTTGATAA+AGG 0.442416 1_4:-5983546 None:intergenic
CTTGGTGTTCAGATCAAAGA+TGG 0.447302 1_4:+5978750 Msa0146260:CDS
TCCTGCCCATGCAGTTCTAA+GGG 0.450476 1_4:+5981689 Msa0146260:intron
TTTGTTCTCGACAAGGATGA+TGG 0.451598 1_4:+5982273 Msa0146260:CDS
GTCTCCCAAACAAACCTTCA+AGG 0.458044 1_4:+5979799 Msa0146260:CDS
ATTAATATTAAGGCAACCTT+AGG 0.458269 1_4:-5983048 None:intergenic
CATGCAGCCATACCTTGATA+AGG 0.460314 1_4:-5983453 None:intergenic
ACACCTTCGGAGTAACTGTT+GGG 0.460966 1_4:+5979043 Msa0146260:CDS
AGATGCTGTTGTTACATTTG+AGG 0.462575 1_4:+5980282 Msa0146260:CDS
AATCTAAAGAAAACTAATCC+TGG 0.464926 1_4:+5982719 Msa0146260:CDS
TGAAGATCGCCCTCCTGCTC+AGG 0.466330 1_4:+5980127 Msa0146260:CDS
TAATGGTATTCCCGATTGCT+TGG 0.467642 1_4:+5983067 Msa0146260:three_prime_UTR
ACTAAAGCTCCCGGATGAGC+AGG 0.468194 1_4:-5983510 None:intergenic
TGGAATTTCATTTACGGACG+TGG 0.473424 1_4:+5982739 Msa0146260:CDS
GGAGGCAAAGTTACCAAGCC+TGG 0.474637 1_4:+5981206 Msa0146260:CDS
TGTTGATAAGGCGGACATAA+CGG 0.474692 1_4:+5978692 Msa0146260:CDS
TTATTGGTGCTGCAGAATCC+GGG 0.475067 1_4:+5978606 Msa0146260:intron
TGGGGAGAAGTTGATCTAAA+CGG 0.476817 1_4:+5979096 Msa0146260:CDS
TTATGTGGTTGAAAGTGAAT+TGG 0.478915 1_4:+5980891 Msa0146260:CDS
CAAATCAATTGATGTTGATA+AGG 0.479324 1_4:+5978680 Msa0146260:CDS
TTTGAGTGTTCTATGTCCCC+GGG 0.479327 1_4:+5983223 Msa0146260:three_prime_UTR
AACATTACCCTCGGCGGCCG+TGG 0.480494 1_4:+5977475 Msa0146260:CDS
TATGTCCCCGGGGTTATAAC+GGG 0.482750 1_4:+5983234 Msa0146260:three_prime_UTR
TTGAATGGCGTGAGGAAGGC+TGG 0.484793 1_4:+5983265 Msa0146260:three_prime_UTR
GAATCAATATTCATGGGTTG+AGG 0.486272 1_4:-5983005 None:intergenic
TGGCCACACCAACAGTTGGT+TGG 0.488815 1_4:-5981739 None:intergenic
TTTCATTTCAGGAAATATGC+TGG 0.489570 1_4:+5979729 Msa0146260:intron
AGGCTTGGTAACTTTGCCTC+CGG 0.495486 1_4:-5981204 None:intergenic
ACAGACAAACTCACCTGAGC+AGG 0.497300 1_4:-5980140 None:intergenic
AGTTTCTTCCAAAACACCTT+CGG 0.497818 1_4:+5979030 Msa0146260:CDS
CAGATTTGAGTCTGATAAGA+AGG 0.497842 1_4:-5981535 None:intergenic
TTTCACGTGGATGACACAAC+TGG 0.498298 1_4:+5979844 Msa0146260:CDS
CACTCTTATTCTTCATGAAG+AGG 0.498347 1_4:+5981337 Msa0146260:CDS
GCACCTAAGAGGGCACTGTC+TGG 0.501489 1_4:+5982581 Msa0146260:CDS
AGAAGCAACTTTCTGTTACT+GGG 0.502319 1_4:+5979067 Msa0146260:CDS
GGGTTGTTCTACAAATTCAC+TGG 0.502970 1_4:+5978771 Msa0146260:CDS
AGGATCCAAATGCACCTAAG+AGG 0.505192 1_4:+5982570 Msa0146260:CDS
CTTCCAGAAACCTGCCAAGA+AGG 0.506566 1_4:+5982448 Msa0146260:intron
TGCCAAGAAGGAACCAAAGA+AGG 0.508120 1_4:+5982460 Msa0146260:CDS
TCTATGGCTGATGTTGGTGC+TGG 0.508943 1_4:+5980253 Msa0146260:CDS
TTTCTGATGCGCTCGAGATG+TGG 0.509278 1_4:-5981797 None:intergenic
CCTCTGTCTCACCACCACTT+TGG 0.510686 1_4:-5982341 None:intergenic
TCATCTTTGAAAGCTGAAGA+TGG 0.512966 1_4:+5981266 Msa0146260:CDS
GGAGGAGAAGGAACCTTATG+AGG 0.513515 1_4:+5982923 Msa0146260:CDS
AATATGCTGGCTTTCATGGT+TGG 0.513596 1_4:+5979742 Msa0146260:CDS
ACGTCCGTAAATGAAATTCC+AGG 0.513793 1_4:-5982737 None:intergenic
CAAGTTGGAGCTGTCTTACA+AGG 0.514183 1_4:+5980951 Msa0146260:CDS
GTACCCTCATATCGTGATGC+AGG 0.515876 1_4:+5980761 Msa0146260:CDS
ACAAACTGGGTATTGGAACT+TGG 0.516545 1_4:-5980098 None:intergenic
ATGCAGCCATACCTTGATAA+GGG 0.518872 1_4:-5983452 None:intergenic
TTTCCTGAATCAATATTCAT+GGG 0.520202 1_4:-5983011 None:intergenic
GGGTATTGGAACTTGGTACA+TGG 0.520299 1_4:-5980091 None:intergenic
GTAGTTTGAAACTGATTATG+TGG 0.523537 1_4:+5980876 Msa0146260:intron
TTCCTACTAGATTGACTATG+TGG 0.523757 1_4:+5981466 Msa0146260:intron
ATTACCCTCGGCGGCCGTGG+CGG 0.524515 1_4:+5977478 Msa0146260:CDS
AAAACTGCAGCCAAGCAATC+GGG 0.526477 1_4:-5983077 None:intergenic
CTCAAAGTACAAAGACAAGT+TGG 0.526767 1_4:+5980936 Msa0146260:CDS
ACCAACTGTTGGTGTGGCCA+AGG 0.529642 1_4:+5981742 Msa0146260:CDS
CGGACATAACGGGCGTAACA+TGG 0.530617 1_4:+5978703 Msa0146260:CDS
AATGAATCTGACAGTGCCTA+AGG 0.531097 1_4:+5983032 Msa0146260:CDS
ATGGCTGATGTTGGTGCTGG+AGG 0.532027 1_4:+5980256 Msa0146260:CDS
TGATAAAACCATACAAATTG+TGG 0.532500 1_4:-5981598 None:intergenic
GTAATTCAGTAATAACATAC+TGG 0.532948 1_4:+5983335 Msa0146260:three_prime_UTR
TTTCTAGACCCTGCTCATCC+GGG 0.534065 1_4:+5983501 Msa0146260:three_prime_UTR
AAGTATCCCTTATCAAGGTA+TGG 0.535971 1_4:+5983446 Msa0146260:three_prime_UTR
TTGATCCTCCTATTCGGAAA+GGG 0.536206 1_4:+5980730 Msa0146260:CDS
CTCTTCAACAACATTACCCT+CGG 0.540205 1_4:+5977466 Msa0146260:CDS
ATGCAATACACCAAAATTGT+GGG 0.542628 1_4:+5983473 Msa0146260:three_prime_UTR
GGTGCCGCCACGGCCGCCGA+GGG 0.543217 1_4:-5977482 None:intergenic
GAATTTGAGCGACATGCTGC+TGG 0.545421 1_4:+5981488 Msa0146260:CDS
AACACCTTCGGAGTAACTGT+TGG 0.545941 1_4:+5979042 Msa0146260:CDS
CATGCAATACACCAAAATTG+TGG 0.547983 1_4:+5983472 Msa0146260:three_prime_UTR
AAATTTAGGAGTTGTCAAGA+TGG 0.550659 1_4:+5981230 Msa0146260:CDS
ATCTTCATCACCAACAAACT+GGG 0.552179 1_4:-5980111 None:intergenic
TTGATATTTCTTAAATGTGG+TGG 0.556537 1_4:+5983138 Msa0146260:three_prime_UTR
GAAAGAAGAAGCTCTTCTCA+AGG 0.556630 1_4:-5981301 None:intergenic
AAGCAGCCCGTTATAACCCC+GGG 0.558730 1_4:-5983240 None:intergenic
GGATCCAAATGCACCTAAGA+GGG 0.559964 1_4:+5982571 Msa0146260:CDS
ACATGGTGCACTAAAGCTCC+CGG 0.562056 1_4:-5983519 None:intergenic
GGCGTGAGGAAGGCTGGAGA+AGG 0.562775 1_4:+5983271 Msa0146260:three_prime_UTR
TTGTTTGAATGGCGTGAGGA+AGG 0.563031 1_4:+5983261 Msa0146260:three_prime_UTR
ATATCAAGTATCCCTTATCA+AGG 0.563880 1_4:+5983441 Msa0146260:three_prime_UTR
AAAGAAGAAGCTCTTCTCAA+GGG 0.564045 1_4:-5981300 None:intergenic
GTTCTTATCAAGTATCTGAT+CGG 0.564175 1_4:+5983371 Msa0146260:three_prime_UTR
TCTCTTTCTCGCCACCATGA+CGG 0.565013 1_4:+5977435 Msa0146260:exon
GTCTGCCCTTTCCGAATAGG+AGG 0.565917 1_4:-5980735 None:intergenic
GACAAACTCACCTGAGCAGG+AGG 0.567937 1_4:-5980137 None:intergenic
TGACACAACTGGAGCAAATG+AGG 0.569007 1_4:+5979855 Msa0146260:CDS
ACCTTGGCCACACCAACAGT+TGG 0.570641 1_4:-5981743 None:intergenic
GAGCGCATCAGAAATGAAGC+TGG 0.571748 1_4:+5981806 Msa0146260:CDS
AGGAAGGCTGGAGAAGGATG+AGG 0.575261 1_4:+5983277 Msa0146260:three_prime_UTR
ATCATCATTCTCAAGCACCT+TGG 0.580790 1_4:-5981759 None:intergenic
CTTGATCCTCCTATTCGGAA+AGG 0.581438 1_4:+5980729 Msa0146260:CDS
TCAATACACAGCGGAGGAGA+AGG 0.582588 1_4:+5982911 Msa0146260:intron
CACTTGATAAAGGGGCAACA+TGG 0.585823 1_4:-5983536 None:intergenic
TTGTCTCTGCACACTGAGAG+AGG 0.586134 1_4:-5977384 None:intergenic
AACGGGCGTAACATGGATGA+AGG 0.587136 1_4:+5978710 Msa0146260:CDS
CTCTTCATGAAGAATAAGAG+TGG 0.590015 1_4:-5981336 None:intergenic
ACTTGATAAGAACCACTAGC+AGG 0.590226 1_4:-5983361 None:intergenic
TCTGTTACTGGGCGCAATTG+GGG 0.591812 1_4:+5979078 Msa0146260:CDS
GGTAAGGACACTTGATAAAG+GGG 0.594577 1_4:-5983544 None:intergenic
GATGAGCAGGGTCTAGAAAG+AGG 0.595240 1_4:-5983497 None:intergenic
TCTCCCAAACAAACCTTCAA+GGG 0.596624 1_4:+5979800 Msa0146260:CDS
ATCAATTGATGTTGATAAGG+CGG 0.597783 1_4:+5978683 Msa0146260:CDS
CAAGCAGCCCGTTATAACCC+CGG 0.597907 1_4:-5983241 None:intergenic
CGCATCAGAAATGAAGCTGG+TGG 0.603857 1_4:+5981809 Msa0146260:CDS
CTAAAGCTCCCGGATGAGCA+GGG 0.606043 1_4:-5983509 None:intergenic
GGACAAACCACGCAATATTG+TGG 0.607048 1_4:-5981183 None:intergenic
TTATGGAAGAGACAGGGAGG+TGG 0.608219 1_4:+5978657 Msa0146260:CDS
ATATTGCGTGGTTTGTCCGG+AGG 0.609437 1_4:+5981188 Msa0146260:CDS
AAGAAGAAGCTCTTCTCAAG+GGG 0.618644 1_4:-5981299 None:intergenic
TGTCTCTGCACACTGAGAGA+GGG 0.619084 1_4:-5977383 None:intergenic
GGAATTTCATTTACGGACGT+GGG 0.619820 1_4:+5982740 Msa0146260:CDS
TCAAAAGATGCTGATGACGA+AGG 0.621100 1_4:+5982518 Msa0146260:CDS
GAGAGCTTACGGTGCCGCCA+CGG 0.622395 1_4:-5977492 None:intergenic
GGTGGTATCTCCTATTGTAA+CGG 0.623791 1_4:+5983156 Msa0146260:three_prime_UTR
TTGGTGTTCAGATCAAAGAT+GGG 0.623826 1_4:+5978751 Msa0146260:CDS
CTCCCCAACAGTTACTCCGA+AGG 0.624094 1_4:-5979046 None:intergenic
GTTCCAAAGACAAATCAACT+TGG 0.626047 1_4:+5978732 Msa0146260:CDS
ACATACTGGTTACCTGCTAG+TGG 0.626603 1_4:+5983349 Msa0146260:three_prime_UTR
TCATGAAGAATAAGAGTGGG+AGG 0.627094 1_4:-5981332 None:intergenic
TTTGAGCGACATGCTGCTGG+TGG 0.628138 1_4:+5981491 Msa0146260:CDS
GACTCTGATGCTAGCCAAAG+TGG 0.628895 1_4:+5982327 Msa0146260:CDS
TGCCCAACCAACTGTTGGTG+TGG 0.630617 1_4:+5981736 Msa0146260:CDS
GTTCTCGACAAGGATGATGG+AGG 0.634483 1_4:+5982276 Msa0146260:CDS
GAAGAGATGACCGTCCGTCA+TGG 0.634783 1_4:-5977449 None:intergenic
CCAAAGTGGTGGTGAGACAG+AGG 0.637450 1_4:+5982341 Msa0146260:CDS
TATTGGTGCTGCAGAATCCG+GGG 0.638125 1_4:+5978607 Msa0146260:intron
CTAATAATGACGAAGGTATG+CGG 0.638553 1_4:-5980705 None:intergenic
GACGGAGAACTACCTGATCA+CGG 0.641013 1_4:-5978797 None:intergenic
ATCAAGACTAATAATGACGA+AGG 0.641692 1_4:-5980712 None:intergenic
TCTTCATGAAGAATAAGAGT+GGG 0.642579 1_4:-5981335 None:intergenic
ATAATGTCTATGGCTGATGT+TGG 0.645958 1_4:+5980247 Msa0146260:CDS
TTTCTCGCCACCATGACGGA+CGG 0.646406 1_4:+5977439 Msa0146260:exon
GCGCTCGAGATGTGGATCGA+CGG 0.648144 1_4:-5981789 None:intergenic
GTGTTTACCACAATATTGCG+TGG 0.650738 1_4:+5981176 Msa0146260:CDS
GCTGATGCCCAACCAACTGT+TGG 0.651825 1_4:+5981731 Msa0146260:CDS
TTACCTGCATCACGATATGA+GGG 0.656286 1_4:-5980764 None:intergenic
CTGCTTGTTTGAATGGCGTG+AGG 0.656311 1_4:+5983257 Msa0146260:three_prime_UTR
AAAGATGCTGATGACGAAGG+AGG 0.658535 1_4:+5982521 Msa0146260:CDS
TCTGCACCAGAATCATCAGT+AGG 0.661015 1_4:-5982303 None:intergenic
CGTTACAAGGATGAGATGAG+TGG 0.662650 1_4:+5982969 Msa0146260:CDS
CACCTTCGGAGTAACTGTTG+GGG 0.674663 1_4:+5979044 Msa0146260:CDS
GAGATGACCGTCCGTCATGG+TGG 0.684087 1_4:-5977446 None:intergenic
ACAAACTCACCTGAGCAGGA+GGG 0.692093 1_4:-5980136 None:intergenic
CAAAATCCAGTACAGCAGTG+TGG 0.693832 1_4:+5980515 Msa0146260:CDS
TGGTGGAGATGAAAGTGACG+AGG 0.704697 1_4:+5981826 Msa0146260:CDS
TGTGATGTTGGAGTTTCACG+TGG 0.716384 1_4:+5979831 Msa0146260:CDS
TTGAGTGTTCTATGTCCCCG+GGG 0.746581 1_4:+5983224 Msa0146260:three_prime_UTR
TCTGATGCTAGCCAAAGTGG+TGG 0.752107 1_4:+5982330 Msa0146260:CDS
TGGAGATGAAAGTGACGAGG+AGG 0.754949 1_4:+5981829 Msa0146260:CDS
TTCAACAACATTACCCTCGG+CGG 0.763342 1_4:+5977469 Msa0146260:CDS
GTATTGCAATCCTTACACCA+AGG 0.765044 1_4:+5980305 Msa0146260:CDS
AGCAGCCCGTTATAACCCCG+GGG 0.772409 1_4:-5983239 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAGAGTTTTTTTTTTA+TGG + chr1_4:5981434-5981453 Msa0146260:intron 10.0%
!! AAAATAATAATGAAAAGATG+AGG + chr1_4:5978510-5978529 Msa0146260:intron 15.0%
!! TACACTTATATTTGTATTAT+TGG + chr1_4:5978590-5978609 Msa0146260:intron 15.0%
!!! AAATATCTTTGAAAATAGTA+GGG - chr1_4:5979294-5979313 None:intergenic 15.0%
!!! TAAATATCTTTGAAAATAGT+AGG - chr1_4:5979295-5979314 None:intergenic 15.0%
!! TATATTAAAAACAAAAAGCA+AGG - chr1_4:5980578-5980597 None:intergenic 15.0%
!!! TGCTTTTGTATATATTAAAT+TGG + chr1_4:5982225-5982244 Msa0146260:intron 15.0%
!! AAAAGGAATTACAAAAGTTA+GGG - chr1_4:5977593-5977612 None:intergenic 20.0%
!! AAAAAGGAATTACAAAAGTT+AGG - chr1_4:5977594-5977613 None:intergenic 20.0%
!! AAATTAGGGATTAACAAAAA+TGG - chr1_4:5977666-5977685 None:intergenic 20.0%
!! AGTAGATTTATTGAGAAAAA+TGG + chr1_4:5977766-5977785 Msa0146260:intron 20.0%
!! GTAGATTTATTGAGAAAAAT+GGG + chr1_4:5977767-5977786 Msa0146260:intron 20.0%
!!! AATCACAATTTACACATTTT+TGG - chr1_4:5977825-5977844 None:intergenic 20.0%
!! TTAAATATCCATCTAGTATT+AGG + chr1_4:5977900-5977919 Msa0146260:intron 20.0%
!!! ATAAGTTTTGTAAGACTATT+TGG - chr1_4:5978387-5978406 None:intergenic 20.0%
!! AACATGTAAATACATATTCA+GGG - chr1_4:5978824-5978843 None:intergenic 20.0%
!! AAACATGTAAATACATATTC+AGG - chr1_4:5978825-5978844 None:intergenic 20.0%
!! ATCAAACACATAAATTTACT+CGG - chr1_4:5979195-5979214 None:intergenic 20.0%
!! TAAAAATGGGTACAAAAAAA+CGG - chr1_4:5979409-5979428 None:intergenic 20.0%
!! AATAGAACCAACTTAAAAAT+GGG - chr1_4:5979422-5979441 None:intergenic 20.0%
!! AAATAGAACCAACTTAAAAA+TGG - chr1_4:5979423-5979442 None:intergenic 20.0%
!!! TAAGTTGGTTCTATTTTTTT+TGG + chr1_4:5979427-5979446 Msa0146260:intron 20.0%
!!! AAGTTGGTTCTATTTTTTTT+GGG + chr1_4:5979428-5979447 Msa0146260:intron 20.0%
!! GAAATGAAAATAGAAACATA+AGG - chr1_4:5979718-5979737 None:intergenic 20.0%
!!! TATGTTTCTATTTTCATTTC+AGG + chr1_4:5979718-5979737 Msa0146260:intron 20.0%
!!! TGACATTTGTAAAATCATTT+TGG + chr1_4:5980203-5980222 Msa0146260:intron 20.0%
!!! TGTAAAATCATTTTGGTATT+AGG + chr1_4:5980210-5980229 Msa0146260:intron 20.0%
!! TAATTCACTATTCAATAATC+AGG + chr1_4:5981139-5981158 Msa0146260:intron 20.0%
!! AATTCACTATTCAATAATCA+GGG + chr1_4:5981140-5981159 Msa0146260:intron 20.0%
!! ATTCATTTCTCTGAATATTT+CGG - chr1_4:5981577-5981596 None:intergenic 20.0%
!!! CAAATATGTGTGATAAATTT+TGG - chr1_4:5981643-5981662 None:intergenic 20.0%
!! AATATAATAGGCTAAGATTA+TGG - chr1_4:5982853-5982872 None:intergenic 20.0%
!! CACAAACACAAAAATATAAT+AGG - chr1_4:5982865-5982884 None:intergenic 20.0%
!!! GTTTTGATATTTCTTAAATG+TGG + chr1_4:5983135-5983154 Msa0146260:three_prime_UTR 20.0%
!!! AGGGTTTATGATTTTGAAAA+AGG - chr1_4:5977610-5977629 None:intergenic 25.0%
! AAATCATAAACCCTAATACT+AGG + chr1_4:5977616-5977635 Msa0146260:intron 25.0%
! AATCATAAACCCTAATACTA+GGG + chr1_4:5977617-5977636 Msa0146260:intron 25.0%
! TGAAAACAACTTATGAACAA+TGG + chr1_4:5978092-5978111 Msa0146260:intron 25.0%
! CAGATAAAAATATATTCTGG+AGG + chr1_4:5978630-5978649 Msa0146260:CDS 25.0%
!!! TATATTCTGGAGGAATTTTA+TGG + chr1_4:5978640-5978659 Msa0146260:CDS 25.0%
! CAAATCAATTGATGTTGATA+AGG + chr1_4:5978680-5978699 Msa0146260:CDS 25.0%
! ACATGTAAATACATATTCAG+GGG - chr1_4:5978823-5978842 None:intergenic 25.0%
!!! CATGTTTTTGATGTTGAAAA+AGG + chr1_4:5978838-5978857 Msa0146260:intron 25.0%
! GAAAAAGGAATTCAATTGTT+TGG + chr1_4:5978853-5978872 Msa0146260:intron 25.0%
!!! ACGTTTTATACTTATTTTGC+AGG + chr1_4:5978990-5979009 Msa0146260:intron 25.0%
! GAGTAAATTTATGTGTTTGA+TGG + chr1_4:5979194-5979213 Msa0146260:intron 25.0%
! ATGTTTGACATCGTTTATAA+TGG + chr1_4:5979222-5979241 Msa0146260:intron 25.0%
!! AATTACCCTGAATTTTACAA+AGG - chr1_4:5979353-5979372 None:intergenic 25.0%
! TTCCTTATAAAAAGAAACAC+CGG + chr1_4:5979372-5979391 Msa0146260:intron 25.0%
!!! TTTTGTACCCATTTTTAAGT+TGG + chr1_4:5979412-5979431 Msa0146260:intron 25.0%
! TCTAATGAATTGATACAGTT+TGG + chr1_4:5979907-5979926 Msa0146260:intron 25.0%
!!! TTTTGGAATTGCGTTTTTTA+TGG + chr1_4:5980014-5980033 Msa0146260:intron 25.0%
! ATCTTGTTACAGCAAATTAT+AGG + chr1_4:5980176-5980195 Msa0146260:intron 25.0%
!!! CCATAGACATTATTTTATCA+CGG - chr1_4:5980240-5980259 None:intergenic 25.0%
!! AGATCAATCTTTTTCTTGAA+AGG - chr1_4:5980408-5980427 None:intergenic 25.0%
!!! AATTACACTTGTCATTTTTG+CGG + chr1_4:5980469-5980488 Msa0146260:CDS 25.0%
! AAACCTTAGGAAGTAAAAAT+AGG - chr1_4:5980545-5980564 None:intergenic 25.0%
! AAAAACAAAAAGCAAGGATT+AGG - chr1_4:5980572-5980591 None:intergenic 25.0%
! AAAGAATCAATTTACATGTG+TGG - chr1_4:5980614-5980633 None:intergenic 25.0%
!!! TGTAAATTGATTCTTTTCTC+TGG + chr1_4:5980618-5980637 Msa0146260:intron 25.0%
!!! TTGACTAAACTGTTGATAAT+TGG + chr1_4:5980976-5980995 Msa0146260:intron 25.0%
!!! TGACTAAACTGTTGATAATT+GGG + chr1_4:5980977-5980996 Msa0146260:intron 25.0%
! ATTCACTATTCAATAATCAG+GGG + chr1_4:5981141-5981160 Msa0146260:intron 25.0%
!! GAAACTAACATTTGGTATTT+TGG - chr1_4:5981389-5981408 None:intergenic 25.0%
!! AAATACCAAATGTTAGTTTC+TGG + chr1_4:5981389-5981408 Msa0146260:intron 25.0%
! AATGAATACCACAATTTGTA+TGG + chr1_4:5981590-5981609 Msa0146260:CDS 25.0%
! TGATAAAACCATACAAATTG+TGG - chr1_4:5981601-5981620 None:intergenic 25.0%
!!! ACAATTTGTATGGTTTTATC+AGG + chr1_4:5981600-5981619 Msa0146260:CDS 25.0%
! TGTTCTAATTTAAGTGATTG+AGG + chr1_4:5981927-5981946 Msa0146260:intron 25.0%
! TAGATATATTCAAATGAGGT+TGG - chr1_4:5981972-5981991 None:intergenic 25.0%
! TGCTTAGATATATTCAAATG+AGG - chr1_4:5981976-5981995 None:intergenic 25.0%
! AATCTAAAGAAAACTAATCC+TGG + chr1_4:5982719-5982738 Msa0146260:CDS 25.0%
! TAATCCTGGAATTTCATTTA+CGG + chr1_4:5982733-5982752 Msa0146260:CDS 25.0%
! AGAAAAATGGAAAAATCTGT+CGG + chr1_4:5982775-5982794 Msa0146260:CDS 25.0%
! TTTCCTGAATCAATATTCAT+GGG - chr1_4:5983014-5983033 None:intergenic 25.0%
! ATTTCCTGAATCAATATTCA+TGG - chr1_4:5983015-5983034 None:intergenic 25.0%
! ATTAATATTAAGGCAACCTT+AGG - chr1_4:5983051-5983070 None:intergenic 25.0%
! TAAGGTTGCCTTAATATTAA+TGG + chr1_4:5983050-5983069 Msa0146260:exon 25.0%
! TTGATATTTCTTAAATGTGG+TGG + chr1_4:5983138-5983157 Msa0146260:three_prime_UTR 25.0%
! GTAATTCAGTAATAACATAC+TGG + chr1_4:5983335-5983354 Msa0146260:three_prime_UTR 25.0%
GGTTATTCAAAAAGAGGAAA+TGG - chr1_4:5977572-5977591 None:intergenic 30.0%
AGTTAGGGTTATTCAAAAAG+AGG - chr1_4:5977578-5977597 None:intergenic 30.0%
TAGAGAAAACCCTAGTATTA+GGG - chr1_4:5977629-5977648 None:intergenic 30.0%
ATAGAGAAAACCCTAGTATT+AGG - chr1_4:5977630-5977649 None:intergenic 30.0%
ACAAATTGCACACAATAACT+AGG - chr1_4:5977880-5977899 None:intergenic 30.0%
ATAAGCTGATTATCCAAACA+GGG - chr1_4:5977926-5977945 None:intergenic 30.0%
TAAGCGCATATCATGATAAA+TGG - chr1_4:5977967-5977986 None:intergenic 30.0%
GCTGTTTATGTATGCTATAT+TGG + chr1_4:5978050-5978069 Msa0146260:intron 30.0%
! AAAACAATTCAGCGTTTTGT+GGG - chr1_4:5978129-5978148 None:intergenic 30.0%
GCTGTTTATGTATGCTATAT+TGG + chr1_4:5978050-5978069 Msa0146260:intron 30.0%
!! TCAACTAACGTAAGTTTTGT+GGG - chr1_4:5978242-5978261 None:intergenic 30.0%
! ATCAACTAACGTAAGTTTTG+TGG - chr1_4:5978243-5978262 None:intergenic 30.0%
!! GTTAGTTGATAAGCTCAAAT+AGG + chr1_4:5978253-5978272 Msa0146260:intron 30.0%
! AGTGTTTTCATTAGCTATCT+TGG + chr1_4:5978295-5978314 Msa0146260:intron 30.0%
!! GAATATATTTTTATCTGCCC+CGG - chr1_4:5978627-5978646 None:intergenic 30.0%
GGGCAGATAAAAATATATTC+TGG + chr1_4:5978627-5978646 Msa0146260:CDS 30.0%
! ATCAATTGATGTTGATAAGG+CGG + chr1_4:5978683-5978702 Msa0146260:CDS 30.0%
CATGTAAATACATATTCAGG+GGG - chr1_4:5978822-5978841 None:intergenic 30.0%
AGGAATTCAATTGTTTGGTT+TGG + chr1_4:5978858-5978877 Msa0146260:intron 30.0%
! TTGGTCAAAGTGTTAATCAA+AGG - chr1_4:5978909-5978928 None:intergenic 30.0%
CAAATCATCAACGTTTAGAT+TGG - chr1_4:5978928-5978947 None:intergenic 30.0%
!! CAATCTAAACGTTGATGATT+TGG + chr1_4:5978926-5978945 Msa0146260:intron 30.0%
!! AAACGTTGATGATTTGGATT+TGG + chr1_4:5978932-5978951 Msa0146260:intron 30.0%
TAAGTATAAAACGTCAACAC+AGG - chr1_4:5978984-5979003 None:intergenic 30.0%
AAATTTACTCGGAGTATAGT+AGG - chr1_4:5979184-5979203 None:intergenic 30.0%
CACTCAAAATACAAACTGAA+TGG - chr1_4:5979325-5979344 None:intergenic 30.0%
TCCTTATAAAAAGAAACACC+GGG + chr1_4:5979373-5979392 Msa0146260:intron 30.0%
AAAGTGAGAAGTTGTTAAGA+TGG + chr1_4:5979520-5979539 Msa0146260:intron 30.0%
AAGTTGTTAAGATGGAAATG+TGG + chr1_4:5979528-5979547 Msa0146260:intron 30.0%
AGTTGTTAAGATGGAAATGT+GGG + chr1_4:5979529-5979548 Msa0146260:intron 30.0%
!!! AAATGTGGGTTCTTTTTTTC+AGG + chr1_4:5979543-5979562 Msa0146260:intron 30.0%
!!! AATGTGGGTTCTTTTTTTCA+GGG + chr1_4:5979544-5979563 Msa0146260:intron 30.0%
TCAAAAAGATCCACCATAAA+GGG - chr1_4:5979648-5979667 None:intergenic 30.0%
ATCAAAAAGATCCACCATAA+AGG - chr1_4:5979649-5979668 None:intergenic 30.0%
!!! TTTATGGTGGATCTTTTTGA+TGG + chr1_4:5979648-5979667 Msa0146260:intron 30.0%
TTTCATTTCAGGAAATATGC+TGG + chr1_4:5979729-5979748 Msa0146260:intron 30.0%
ATCTCAGAAAGATTCTTTGA+TGG + chr1_4:5980058-5980077 Msa0146260:intron 30.0%
CCGTGATAAAATAATGTCTA+TGG + chr1_4:5980237-5980256 Msa0146260:CDS 30.0%
TGTTGTACAATACATTACCT+TGG - chr1_4:5980325-5980344 None:intergenic 30.0%
! AAATTTGCTTTATTGTGCAG+AGG + chr1_4:5980432-5980451 Msa0146260:intron 30.0%
ATCAAGACTAATAATGACGA+AGG - chr1_4:5980715-5980734 None:intergenic 30.0%
! GTAGTTTGAAACTGATTATG+TGG + chr1_4:5980876-5980895 Msa0146260:intron 30.0%
TTATGTGGTTGAAAGTGAAT+TGG + chr1_4:5980891-5980910 Msa0146260:CDS 30.0%
!!! AAGGGCATATTTTAGTTGAT+TGG + chr1_4:5981054-5981073 Msa0146260:intron 30.0%
!!! GCATATTTTAGTTGATTGGT+TGG + chr1_4:5981058-5981077 Msa0146260:intron 30.0%
ATATTGTGGTAAACACTTCA+TGG - chr1_4:5981172-5981191 None:intergenic 30.0%
AAATTTAGGAGTTGTCAAGA+TGG + chr1_4:5981230-5981249 Msa0146260:CDS 30.0%
TCTTCATGAAGAATAAGAGT+GGG - chr1_4:5981338-5981357 None:intergenic 30.0%
ATCAACCAGAAACTAACATT+TGG - chr1_4:5981397-5981416 None:intergenic 30.0%
ATAGTCAATCTAGTAGGAAA+TGG - chr1_4:5981465-5981484 None:intergenic 30.0%
! CTTTATTCATGAGTAGCTTT+TGG + chr1_4:5981896-5981915 Msa0146260:intron 30.0%
! GTCTACTTACATTTCAGTTT+TGG + chr1_4:5982027-5982046 Msa0146260:intron 30.0%
AATTGGTGTAAAATGTCTAC+AGG + chr1_4:5982242-5982261 Msa0146260:intron 30.0%
ACCTCTACTCTTTAAATCTT+TGG + chr1_4:5982398-5982417 Msa0146260:intron 30.0%
ACCAAAGATTTAAAGAGTAG+AGG - chr1_4:5982402-5982421 None:intergenic 30.0%
GAAGAAACAGAAGAAGAAAA+AGG + chr1_4:5982550-5982569 Msa0146260:CDS 30.0%
! TTTCATGTTCTTTTCTCAGA+TGG + chr1_4:5982604-5982623 Msa0146260:CDS 30.0%
GTACATACATATTAGTGATG+TGG + chr1_4:5982649-5982668 Msa0146260:intron 30.0%
GAAAAATGGAAAAATCTGTC+GGG + chr1_4:5982776-5982795 Msa0146260:CDS 30.0%
ATGGAACTGCAATGAAATAA+TGG - chr1_4:5982814-5982833 None:intergenic 30.0%
ATGCAAAGAAACAGAAAACT+TGG - chr1_4:5982889-5982908 None:intergenic 30.0%
!! GTAACGCTTTTTATCTTCTT+GGG - chr1_4:5982955-5982974 None:intergenic 30.0%
!! TGTAACGCTTTTTATCTTCT+TGG - chr1_4:5982956-5982975 None:intergenic 30.0%
!! AGAAGATAAAAAGCGTTACA+AGG + chr1_4:5982956-5982975 Msa0146260:CDS 30.0%
CGGGAATACCATTAATATTA+AGG - chr1_4:5983061-5983080 None:intergenic 30.0%
GTTCTTATCAAGTATCTGAT+CGG + chr1_4:5983371-5983390 Msa0146260:three_prime_UTR 30.0%
ATATCAAGTATCCCTTATCA+AGG + chr1_4:5983441-5983460 Msa0146260:three_prime_UTR 30.0%
ATGCAATACACCAAAATTGT+GGG + chr1_4:5983473-5983492 Msa0146260:three_prime_UTR 30.0%
TAAGAAGGGGAAAAAAGATT+TGG - chr1_4:5983568-5983587 None:intergenic 30.0%
TGAGGAAAGAAGATCGAAAA+TGG - chr1_4:5977541-5977560 None:intergenic 35.0%
TCAAAAAGAGGAAATGGTGA+AGG - chr1_4:5977566-5977585 None:intergenic 35.0%
! ACAATAACTAGGTTTGAAGC+TGG - chr1_4:5977869-5977888 None:intergenic 35.0%
GATAAGCTGATTATCCAAAC+AGG - chr1_4:5977927-5977946 None:intergenic 35.0%
! GAAAACAATTCAGCGTTTTG+TGG - chr1_4:5978130-5978149 None:intergenic 35.0%
TCATTAGCTGTTATGTGTCA+AGG + chr1_4:5978455-5978474 Msa0146260:intron 35.0%
! AGGAATTTTATGGAAGAGAC+AGG + chr1_4:5978650-5978669 Msa0146260:CDS 35.0%
! GGAATTTTATGGAAGAGACA+GGG + chr1_4:5978651-5978670 Msa0146260:CDS 35.0%
GTTCCAAAGACAAATCAACT+TGG + chr1_4:5978732-5978751 Msa0146260:CDS 35.0%
!! ACACCAAGTTGATTTGTCTT+TGG - chr1_4:5978738-5978757 None:intergenic 35.0%
! TTGGTGTTCAGATCAAAGAT+GGG + chr1_4:5978751-5978770 Msa0146260:CDS 35.0%
TAAATACATATTCAGGGGGA+CGG - chr1_4:5978818-5978837 None:intergenic 35.0%
!! TTCAATTGTTTGGTTTGGCT+TGG + chr1_4:5978863-5978882 Msa0146260:intron 35.0%
AGTTTCTTCCAAAACACCTT+CGG + chr1_4:5979030-5979049 Msa0146260:CDS 35.0%
AGAAGCAACTTTCTGTTACT+GGG + chr1_4:5979067-5979086 Msa0146260:CDS 35.0%
! TACCCTGAATTTTACAAAGG+CGG - chr1_4:5979350-5979369 None:intergenic 35.0%
TGATGTAACAACCAGATTGA+AGG - chr1_4:5979489-5979508 None:intergenic 35.0%
AAATGCAGTCTTTCCCTTTA+TGG + chr1_4:5979632-5979651 Msa0146260:intron 35.0%
!! CTGACTTGACTGCTTTTATA+CGG + chr1_4:5979673-5979692 Msa0146260:intron 35.0%
! TTTCCCTTGAAGGTTTGTTT+GGG - chr1_4:5979806-5979825 None:intergenic 35.0%
!! TTTTCCCTTGAAGGTTTGTT+TGG - chr1_4:5979807-5979826 None:intergenic 35.0%
!! TCACATCATTTTTCCCTTGA+AGG - chr1_4:5979816-5979835 None:intergenic 35.0%
AGGGAAAAATGATGTGATGT+TGG + chr1_4:5979819-5979838 Msa0146260:CDS 35.0%
ATACTATTCAAGCCCAAGTT+TGG - chr1_4:5979970-5979989 None:intergenic 35.0%
TTGGGCTTGAATAGTATTGT+AGG + chr1_4:5979973-5979992 Msa0146260:intron 35.0%
TATTGTAGGCTGCAGTTAAT+AGG + chr1_4:5979987-5980006 Msa0146260:intron 35.0%
! TGCAGTTAATAGGCTCATTT+TGG + chr1_4:5979997-5980016 Msa0146260:intron 35.0%
ATCTTCATCACCAACAAACT+GGG - chr1_4:5980114-5980133 None:intergenic 35.0%
ATAATGTCTATGGCTGATGT+TGG + chr1_4:5980247-5980266 Msa0146260:CDS 35.0%
AGATGCTGTTGTTACATTTG+AGG + chr1_4:5980282-5980301 Msa0146260:CDS 35.0%
GATGCTGTTGTTACATTTGA+GGG + chr1_4:5980283-5980302 Msa0146260:CDS 35.0%
! CAATACATTACCTTGGTGTA+AGG - chr1_4:5980318-5980337 None:intergenic 35.0%
!!! TCGCCTATTTTTACTTCCTA+AGG + chr1_4:5980539-5980558 Msa0146260:CDS 35.0%
AGGATTAGGAGATAAACCTT+AGG - chr1_4:5980558-5980577 None:intergenic 35.0%
! CTAATAATGACGAAGGTATG+CGG - chr1_4:5980708-5980727 None:intergenic 35.0%
!! TTAGTCTTGATCCTCCTATT+CGG + chr1_4:5980724-5980743 Msa0146260:CDS 35.0%
! CAGGTAATGTTTTACTTCGT+TGG + chr1_4:5980780-5980799 Msa0146260:intron 35.0%
CAGTTTCAAACTACACAGAA+AGG - chr1_4:5980870-5980889 None:intergenic 35.0%
CTCAAAGTACAAAGACAAGT+TGG + chr1_4:5980936-5980955 Msa0146260:CDS 35.0%
!! AGCTGCTTTGGAAATGAAAA+AGG + chr1_4:5981035-5981054 Msa0146260:intron 35.0%
!! GCTGCTTTGGAAATGAAAAA+GGG + chr1_4:5981036-5981055 Msa0146260:intron 35.0%
TTACCAAGCCTGGAAAATTT+AGG + chr1_4:5981216-5981235 Msa0146260:CDS 35.0%
! TGACAACTCCTAAATTTTCC+AGG - chr1_4:5981227-5981246 None:intergenic 35.0%
! TCATCTTTGAAAGCTGAAGA+TGG + chr1_4:5981266-5981285 Msa0146260:CDS 35.0%
AAAGAAGAAGCTCTTCTCAA+GGG - chr1_4:5981303-5981322 None:intergenic 35.0%
CTCTTCATGAAGAATAAGAG+TGG - chr1_4:5981339-5981358 None:intergenic 35.0%
CACTCTTATTCTTCATGAAG+AGG + chr1_4:5981337-5981356 Msa0146260:CDS 35.0%
TTCCTACTAGATTGACTATG+TGG + chr1_4:5981466-5981485 Msa0146260:intron 35.0%
TTCCACATAGTCAATCTAGT+AGG - chr1_4:5981471-5981490 None:intergenic 35.0%
CAGATTTGAGTCTGATAAGA+AGG - chr1_4:5981538-5981557 None:intergenic 35.0%
CAAGTAGTCAAGTACAGATT+AGG - chr1_4:5981857-5981876 None:intergenic 35.0%
GCTACTCATGAATAAAGAAG+AGG - chr1_4:5981893-5981912 None:intergenic 35.0%
! TTCAGATTTTGTTCTCGACA+AGG + chr1_4:5982266-5982285 Msa0146260:CDS 35.0%
AGATTTAAAGAGTAGAGGTG+AGG - chr1_4:5982397-5982416 None:intergenic 35.0%
! TGGTCATCATTAAGGTGTTA+CGG - chr1_4:5982427-5982446 None:intergenic 35.0%
TTAGAAGGCAAATCCTTCTT+TGG - chr1_4:5982476-5982495 None:intergenic 35.0%
AAAGAAGGATTTGCCTTCTA+AGG + chr1_4:5982475-5982494 Msa0146260:CDS 35.0%
TTAGAAGTAGATGCCTTAGA+AGG - chr1_4:5982491-5982510 None:intergenic 35.0%
!! GAAGAGTACTTGGAGAAAAA+TGG + chr1_4:5982762-5982781 Msa0146260:CDS 35.0%
TTTGCATGTTCAATACACAG+CGG + chr1_4:5982902-5982921 Msa0146260:intron 35.0%
! CTTTTTATCTTCTTGGGCTT+TGG - chr1_4:5982949-5982968 None:intergenic 35.0%
! GAATCAATATTCATGGGTTG+AGG - chr1_4:5983008-5983027 None:intergenic 35.0%
!! CAACCCATGAATATTGATTC+AGG + chr1_4:5983008-5983027 Msa0146260:CDS 35.0%
!! TGTCGATTTACCGTTACAAT+AGG - chr1_4:5983169-5983188 None:intergenic 35.0%
! GGTAAATCGACAGAGTTTTA+TGG + chr1_4:5983177-5983196 Msa0146260:three_prime_UTR 35.0%
AAGTATCCCTTATCAAGGTA+TGG + chr1_4:5983446-5983465 Msa0146260:three_prime_UTR 35.0%
CATGCAATACACCAAAATTG+TGG + chr1_4:5983472-5983491 Msa0146260:three_prime_UTR 35.0%
TGGTAAGGACACTTGATAAA+GGG - chr1_4:5983548-5983567 None:intergenic 35.0%
TTGGTAAGGACACTTGATAA+AGG - chr1_4:5983549-5983568 None:intergenic 35.0%
! AGGGGAAAAAAGATTTGGTA+AGG - chr1_4:5983563-5983582 None:intergenic 35.0%
CTCTTCAACAACATTACCCT+CGG + chr1_4:5977466-5977485 Msa0146260:CDS 40.0%
AAACAGGGCCTAATACTAGA+TGG - chr1_4:5977911-5977930 None:intergenic 40.0%
ATCTAGTATTAGGCCCTGTT+TGG + chr1_4:5977910-5977929 Msa0146260:intron 40.0%
! TGAAACACTCAGAGCTTGTT+TGG - chr1_4:5978438-5978457 None:intergenic 40.0%
!! ATTATTGGTGCTGCAGAATC+CGG + chr1_4:5978605-5978624 Msa0146260:intron 40.0%
! ATTTTATGGAAGAGACAGGG+AGG + chr1_4:5978654-5978673 Msa0146260:CDS 40.0%
! TGTTGATAAGGCGGACATAA+CGG + chr1_4:5978692-5978711 Msa0146260:CDS 40.0%
!! CTTGGTGTTCAGATCAAAGA+TGG + chr1_4:5978750-5978769 Msa0146260:CDS 40.0%
GGGTTGTTCTACAAATTCAC+TGG + chr1_4:5978771-5978790 Msa0146260:CDS 40.0%
!! TTGTTTGGTTTGGCTTGGTT+TGG + chr1_4:5978868-5978887 Msa0146260:intron 40.0%
GAGAAGCAACTTTCTGTTAC+TGG + chr1_4:5979066-5979085 Msa0146260:CDS 40.0%
! TGGGGAGAAGTTGATCTAAA+CGG + chr1_4:5979096-5979115 Msa0146260:CDS 40.0%
! GAGAAGTTGATCTAAACGGT+TGG + chr1_4:5979100-5979119 Msa0146260:intron 40.0%
CACCGCCTTTGTAAAATTCA+GGG + chr1_4:5979345-5979364 Msa0146260:intron 40.0%
! GCCCGGTGTTTCTTTTTATA+AGG - chr1_4:5979377-5979396 None:intergenic 40.0%
AACAACCAGATTGAAGGTAG+TGG - chr1_4:5979483-5979502 None:intergenic 40.0%
!!! TGGGTTCTTTTTTTCAGGGT+GGG + chr1_4:5979548-5979567 Msa0146260:intron 40.0%
CTCATTCATGCTTTCTTCTC+TGG + chr1_4:5979603-5979622 Msa0146260:intron 40.0%
TTATACGGCTATACTACCAG+TGG + chr1_4:5979688-5979707 Msa0146260:intron 40.0%
AGAAACATAAGGACATCCAC+TGG - chr1_4:5979707-5979726 None:intergenic 40.0%
!! AGGAAATATGCTGGCTTTCA+TGG + chr1_4:5979738-5979757 Msa0146260:intron 40.0%
!! AATATGCTGGCTTTCATGGT+TGG + chr1_4:5979742-5979761 Msa0146260:CDS 40.0%
! TGGTTCAAAGCAAGCTTTTG+AGG + chr1_4:5979762-5979781 Msa0146260:CDS 40.0%
TCTCCCAAACAAACCTTCAA+GGG + chr1_4:5979800-5979819 Msa0146260:CDS 40.0%
AAACCTTCCTCATCCAAACT+TGG + chr1_4:5979954-5979973 Msa0146260:intron 40.0%
AACCTTCCTCATCCAAACTT+GGG + chr1_4:5979955-5979974 Msa0146260:intron 40.0%
!! ACAAACTGGGTATTGGAACT+TGG - chr1_4:5980101-5980120 None:intergenic 40.0%
AGTTCCAATACCCAGTTTGT+TGG + chr1_4:5980101-5980120 Msa0146260:CDS 40.0%
ATCACCAACAAACTGGGTAT+TGG - chr1_4:5980108-5980127 None:intergenic 40.0%
GATCTTCATCACCAACAAAC+TGG - chr1_4:5980115-5980134 None:intergenic 40.0%
GTATTGCAATCCTTACACCA+AGG + chr1_4:5980305-5980324 Msa0146260:CDS 40.0%
!!! TTGTCATTTTTGCGGCTTCA+GGG + chr1_4:5980477-5980496 Msa0146260:CDS 40.0%
TGACAGCTTATCATGTCTGT+TGG + chr1_4:5980657-5980676 Msa0146260:intron 40.0%
TTGATCCTCCTATTCGGAAA+GGG + chr1_4:5980730-5980749 Msa0146260:CDS 40.0%
TTACCTGCATCACGATATGA+GGG - chr1_4:5980767-5980786 None:intergenic 40.0%
ATTACCTGCATCACGATATG+AGG - chr1_4:5980768-5980787 None:intergenic 40.0%
! GAAAGGAGCACAACATTGTT+AGG - chr1_4:5980853-5980872 None:intergenic 40.0%
! GATTGGTTGGTGTGAGAATT+TGG + chr1_4:5981071-5981090 Msa0146260:intron 40.0%
! TGTGAGAATTTGGTAACTCG+TGG + chr1_4:5981081-5981100 Msa0146260:intron 40.0%
! GTGAGAATTTGGTAACTCGT+GGG + chr1_4:5981082-5981101 Msa0146260:intron 40.0%
GTGTTTACCACAATATTGCG+TGG + chr1_4:5981176-5981195 Msa0146260:CDS 40.0%
! ACAATATTGCGTGGTTTGTC+CGG + chr1_4:5981185-5981204 Msa0146260:CDS 40.0%
! ACTCCTAAATTTTCCAGGCT+TGG - chr1_4:5981222-5981241 None:intergenic 40.0%
AAGAAGAAGCTCTTCTCAAG+GGG - chr1_4:5981302-5981321 None:intergenic 40.0%
GAAAGAAGAAGCTCTTCTCA+AGG - chr1_4:5981304-5981323 None:intergenic 40.0%
AGAATAAGAGTGGGAGGTTT+AGG - chr1_4:5981329-5981348 None:intergenic 40.0%
TCATGAAGAATAAGAGTGGG+AGG - chr1_4:5981335-5981354 None:intergenic 40.0%
ATCATCATTCTCAAGCACCT+TGG - chr1_4:5981762-5981781 None:intergenic 40.0%
AAAGGGATAGATGGACAAAC+AGG - chr1_4:5982098-5982117 None:intergenic 40.0%
GACAAACTGAAAGGGATAGA+TGG - chr1_4:5982107-5982126 None:intergenic 40.0%
! GAGAGCATGACAAACTGAAA+GGG - chr1_4:5982115-5982134 None:intergenic 40.0%
! AGAGAGCATGACAAACTGAA+AGG - chr1_4:5982116-5982135 None:intergenic 40.0%
CTCTGTATTGCTTACTGTTG+TGG + chr1_4:5982132-5982151 Msa0146260:intron 40.0%
TGTCATATGCGTATGTCTTG+TGG + chr1_4:5982164-5982183 Msa0146260:intron 40.0%
GTCATATGCGTATGTCTTGT+GGG + chr1_4:5982165-5982184 Msa0146260:intron 40.0%
TTTGTTCTCGACAAGGATGA+TGG + chr1_4:5982273-5982292 Msa0146260:CDS 40.0%
! CTGGAAGTTGGTCATCATTA+AGG - chr1_4:5982435-5982454 None:intergenic 40.0%
! ATCCTTCTTTGGTTCCTTCT+TGG - chr1_4:5982465-5982484 None:intergenic 40.0%
! TCAAAAGATGCTGATGACGA+AGG + chr1_4:5982518-5982537 Msa0146260:CDS 40.0%
! CTTTTCTCAGATGGAAAGAG+AGG + chr1_4:5982613-5982632 Msa0146260:CDS 40.0%
ACGTCCGTAAATGAAATTCC+AGG - chr1_4:5982740-5982759 None:intergenic 40.0%
TGGAATTTCATTTACGGACG+TGG + chr1_4:5982739-5982758 Msa0146260:CDS 40.0%
GGAATTTCATTTACGGACGT+GGG + chr1_4:5982740-5982759 Msa0146260:CDS 40.0%
ATGGAAAAATCTGTCGGGTA+TGG + chr1_4:5982781-5982800 Msa0146260:CDS 40.0%
TGGTCACAAATGACACTAGA+TGG - chr1_4:5982833-5982852 None:intergenic 40.0%
AATGAATCTGACAGTGCCTA+AGG + chr1_4:5983032-5983051 Msa0146260:CDS 40.0%
TAATGGTATTCCCGATTGCT+TGG + chr1_4:5983067-5983086 Msa0146260:three_prime_UTR 40.0%
TAAAACTGCAGCCAAGCAAT+CGG - chr1_4:5983081-5983100 None:intergenic 40.0%
GGTGGTATCTCCTATTGTAA+CGG + chr1_4:5983156-5983175 Msa0146260:three_prime_UTR 40.0%
ACTTGATAAGAACCACTAGC+AGG - chr1_4:5983364-5983383 None:intergenic 40.0%
ATGCAGCCATACCTTGATAA+GGG - chr1_4:5983455-5983474 None:intergenic 40.0%
! AGAAAGAGGTCCCACAATTT+TGG - chr1_4:5983486-5983505 None:intergenic 40.0%
GGTAAGGACACTTGATAAAG+GGG - chr1_4:5983547-5983566 None:intergenic 40.0%
TTCAACAACATTACCCTCGG+CGG + chr1_4:5977469-5977488 Msa0146260:CDS 45.0%
AGAGAGAGAGAGAGAGCTTA+CGG - chr1_4:5977506-5977525 None:intergenic 45.0%
GAGGAAATGGTGAAGGTTTG+AGG - chr1_4:5977559-5977578 None:intergenic 45.0%
! CACTCAGAGCTTGTTTGGAT+TGG - chr1_4:5978433-5978452 None:intergenic 45.0%
!! TTATTGGTGCTGCAGAATCC+GGG + chr1_4:5978606-5978625 Msa0146260:intron 45.0%
! GTTGATAAGGCGGACATAAC+GGG + chr1_4:5978693-5978712 Msa0146260:CDS 45.0%
!! ATTCACTGGTTTCCGTGATC+AGG + chr1_4:5978785-5978804 Msa0146260:CDS 45.0%
!!! CAGTTACTCCGAAGGTGTTT+TGG - chr1_4:5979041-5979060 None:intergenic 45.0%
AACACCTTCGGAGTAACTGT+TGG + chr1_4:5979042-5979061 Msa0146260:CDS 45.0%
ACACCTTCGGAGTAACTGTT+GGG + chr1_4:5979043-5979062 Msa0146260:CDS 45.0%
TTTCTGTTACTGGGCGCAAT+TGG + chr1_4:5979076-5979095 Msa0146260:CDS 45.0%
TTCTGTTACTGGGCGCAATT+GGG + chr1_4:5979077-5979096 Msa0146260:CDS 45.0%
ATGGCAGCATCATGAAGACA+TGG + chr1_4:5979241-5979260 Msa0146260:intron 45.0%
GCACCGCCTTTGTAAAATTC+AGG + chr1_4:5979344-5979363 Msa0146260:intron 45.0%
AAAAACGGCAGATAACTGCC+CGG - chr1_4:5979394-5979413 None:intergenic 45.0%
AAGCACCACTACCTTCAATC+TGG + chr1_4:5979475-5979494 Msa0146260:intron 45.0%
!!! GTGGGTTCTTTTTTTCAGGG+TGG + chr1_4:5979547-5979566 Msa0146260:intron 45.0%
!!! GGGTTCTTTTTTTCAGGGTG+GGG + chr1_4:5979549-5979568 Msa0146260:intron 45.0%
!!! TCTTTTTTTCAGGGTGGGGA+TGG + chr1_4:5979553-5979572 Msa0146260:intron 45.0%
!!! CTTTTTTTCAGGGTGGGGAT+GGG + chr1_4:5979554-5979573 Msa0146260:intron 45.0%
!!! TTTTTTTCAGGGTGGGGATG+GGG + chr1_4:5979555-5979574 Msa0146260:intron 45.0%
! ATGGGGTTTGCTTCTCAAAC+AGG + chr1_4:5979572-5979591 Msa0146260:intron 45.0%
TGCAGTCTTTCCCTTTATGG+TGG + chr1_4:5979635-5979654 Msa0146260:intron 45.0%
GTCTCCCAAACAAACCTTCA+AGG + chr1_4:5979799-5979818 Msa0146260:CDS 45.0%
TGTGATGTTGGAGTTTCACG+TGG + chr1_4:5979831-5979850 Msa0146260:CDS 45.0%
TTTCACGTGGATGACACAAC+TGG + chr1_4:5979844-5979863 Msa0146260:CDS 45.0%
TGACACAACTGGAGCAAATG+AGG + chr1_4:5979855-5979874 Msa0146260:CDS 45.0%
! AGTTTGGAACAACTTGCAGC+TGG + chr1_4:5979923-5979942 Msa0146260:intron 45.0%
TTCAAGCCCAAGTTTGGATG+AGG - chr1_4:5979964-5979983 None:intergenic 45.0%
!! GGGTATTGGAACTTGGTACA+TGG - chr1_4:5980094-5980113 None:intergenic 45.0%
GACACAATCGAACAGAAGCA+TGG - chr1_4:5980386-5980405 None:intergenic 45.0%
!!! CTTGTCATTTTTGCGGCTTC+AGG + chr1_4:5980476-5980495 Msa0146260:CDS 45.0%
CAAAATCCAGTACAGCAGTG+TGG + chr1_4:5980515-5980534 Msa0146260:CDS 45.0%
CTTGATCCTCCTATTCGGAA+AGG + chr1_4:5980729-5980748 Msa0146260:CDS 45.0%
AAAGTCTGCCCTTTCCGAAT+AGG - chr1_4:5980741-5980760 None:intergenic 45.0%
! CAAGTTGGAGCTGTCTTACA+AGG + chr1_4:5980951-5980970 Msa0146260:CDS 45.0%
CATTTCCAAAGCAGCTCTTG+AGG - chr1_4:5981031-5981050 None:intergenic 45.0%
GGACAAACCACGCAATATTG+TGG - chr1_4:5981186-5981205 None:intergenic 45.0%
TCAAGCCCTTAGAACTGCAT+GGG - chr1_4:5981697-5981716 None:intergenic 45.0%
TTCAAGCCCTTAGAACTGCA+TGG - chr1_4:5981698-5981717 None:intergenic 45.0%
ATATGCGTATGTCTTGTGGG+AGG + chr1_4:5982168-5982187 Msa0146260:intron 45.0%
GGTTCTCCTACTGATGATTC+TGG + chr1_4:5982297-5982316 Msa0146260:CDS 45.0%
TCTGCACCAGAATCATCAGT+AGG - chr1_4:5982306-5982325 None:intergenic 45.0%
! TTCTTTGGTTCCTTCTTGGC+AGG - chr1_4:5982461-5982480 None:intergenic 45.0%
TGCCAAGAAGGAACCAAAGA+AGG + chr1_4:5982460-5982479 Msa0146260:CDS 45.0%
! AAAGATGCTGATGACGAAGG+AGG + chr1_4:5982521-5982540 Msa0146260:CDS 45.0%
AGGATCCAAATGCACCTAAG+AGG + chr1_4:5982570-5982589 Msa0146260:CDS 45.0%
GGATCCAAATGCACCTAAGA+GGG + chr1_4:5982571-5982590 Msa0146260:CDS 45.0%
AAAAATCTGTCGGGTATGGC+TGG + chr1_4:5982785-5982804 Msa0146260:CDS 45.0%
CGTTACAAGGATGAGATGAG+TGG + chr1_4:5982969-5982988 Msa0146260:CDS 45.0%
AAAACTGCAGCCAAGCAATC+GGG - chr1_4:5983080-5983099 None:intergenic 45.0%
GTTTGAGTGTTCTATGTCCC+CGG + chr1_4:5983222-5983241 Msa0146260:three_prime_UTR 45.0%
TTTGAGTGTTCTATGTCCCC+GGG + chr1_4:5983223-5983242 Msa0146260:three_prime_UTR 45.0%
!! TAACGGGCTGCTTGTTTGAA+TGG + chr1_4:5983250-5983269 Msa0146260:three_prime_UTR 45.0%
TTGTTTGAATGGCGTGAGGA+AGG + chr1_4:5983261-5983280 Msa0146260:three_prime_UTR 45.0%
! ACATACTGGTTACCTGCTAG+TGG + chr1_4:5983349-5983368 Msa0146260:three_prime_UTR 45.0%
CATGCAGCCATACCTTGATA+AGG - chr1_4:5983456-5983475 None:intergenic 45.0%
CACTTGATAAAGGGGCAACA+TGG - chr1_4:5983539-5983558 None:intergenic 45.0%
!! AATTACAATAATAAAAATTA+GGG - chr1_4:5977680-5977699 None:intergenic 5.0%
!! TAATTACAATAATAAAAATT+AGG - chr1_4:5977681-5977700 None:intergenic 5.0%
!!! TATATATATATATATAGTTT+TGG + chr1_4:5979880-5979899 Msa0146260:intron 5.0%
TGTCTCTGCACACTGAGAGA+GGG - chr1_4:5977386-5977405 None:intergenic 50.0%
TTGTCTCTGCACACTGAGAG+AGG - chr1_4:5977387-5977406 None:intergenic 50.0%
TCTCTTTCTCGCCACCATGA+CGG + chr1_4:5977435-5977454 Msa0146260:exon 50.0%
!! TATTGGTGCTGCAGAATCCG+GGG + chr1_4:5978607-5978626 Msa0146260:intron 50.0%
TTATGGAAGAGACAGGGAGG+TGG + chr1_4:5978657-5978676 Msa0146260:CDS 50.0%
AACGGGCGTAACATGGATGA+AGG + chr1_4:5978710-5978729 Msa0146260:CDS 50.0%
GACGGAGAACTACCTGATCA+CGG - chr1_4:5978800-5978819 None:intergenic 50.0%
CACCTTCGGAGTAACTGTTG+GGG + chr1_4:5979044-5979063 Msa0146260:CDS 50.0%
TCTGTTACTGGGCGCAATTG+GGG + chr1_4:5979078-5979097 Msa0146260:CDS 50.0%
AGCCCAAGTTTGGATGAGGA+AGG - chr1_4:5979960-5979979 None:intergenic 50.0%
ACAAACTCACCTGAGCAGGA+GGG - chr1_4:5980139-5980158 None:intergenic 50.0%
ACAGACAAACTCACCTGAGC+AGG - chr1_4:5980143-5980162 None:intergenic 50.0%
TCTATGGCTGATGTTGGTGC+TGG + chr1_4:5980253-5980272 Msa0146260:CDS 50.0%
! ATTTTTGCGGCTTCAGGGAC+AGG + chr1_4:5980482-5980501 Msa0146260:CDS 50.0%
GTACCCTCATATCGTGATGC+AGG + chr1_4:5980761-5980780 Msa0146260:CDS 50.0%
CTCTTGAGGAGCAGTATCTC+AGG - chr1_4:5981017-5981036 None:intergenic 50.0%
! ATATTGCGTGGTTTGTCCGG+AGG + chr1_4:5981188-5981207 Msa0146260:CDS 50.0%
! AGGCTTGGTAACTTTGCCTC+CGG - chr1_4:5981207-5981226 None:intergenic 50.0%
GAATTTGAGCGACATGCTGC+TGG + chr1_4:5981488-5981507 Msa0146260:CDS 50.0%
! TCCTGCCCATGCAGTTCTAA+GGG + chr1_4:5981689-5981708 Msa0146260:intron 50.0%
TTTCTGATGCGCTCGAGATG+TGG - chr1_4:5981800-5981819 None:intergenic 50.0%
GAGCGCATCAGAAATGAAGC+TGG + chr1_4:5981806-5981825 Msa0146260:CDS 50.0%
CGCATCAGAAATGAAGCTGG+TGG + chr1_4:5981809-5981828 Msa0146260:CDS 50.0%
TGGTGGAGATGAAAGTGACG+AGG + chr1_4:5981826-5981845 Msa0146260:CDS 50.0%
TGGAGATGAAAGTGACGAGG+AGG + chr1_4:5981829-5981848 Msa0146260:CDS 50.0%
! GTTCTCGACAAGGATGATGG+AGG + chr1_4:5982276-5982295 Msa0146260:CDS 50.0%
GACTCTGATGCTAGCCAAAG+TGG + chr1_4:5982327-5982346 Msa0146260:CDS 50.0%
TCTGATGCTAGCCAAAGTGG+TGG + chr1_4:5982330-5982349 Msa0146260:CDS 50.0%
! CTTGGCAGGTTTCTGGAAGT+TGG - chr1_4:5982447-5982466 None:intergenic 50.0%
CTTCCAGAAACCTGCCAAGA+AGG + chr1_4:5982448-5982467 Msa0146260:intron 50.0%
GTTCCTTCTTGGCAGGTTTC+TGG - chr1_4:5982454-5982473 None:intergenic 50.0%
AGTGCCCTCTTAGGTGCATT+TGG - chr1_4:5982578-5982597 None:intergenic 50.0%
AAACCAGACAGTGCCCTCTT+AGG - chr1_4:5982587-5982606 None:intergenic 50.0%
GCATGTTCAATACACAGCGG+AGG + chr1_4:5982905-5982924 Msa0146260:intron 50.0%
TCAATACACAGCGGAGGAGA+AGG + chr1_4:5982911-5982930 Msa0146260:intron 50.0%
GGAGGAGAAGGAACCTTATG+AGG + chr1_4:5982923-5982942 Msa0146260:CDS 50.0%
! TCTTGGGCTTTGGCCTCATA+AGG - chr1_4:5982939-5982958 None:intergenic 50.0%
TTGAGTGTTCTATGTCCCCG+GGG + chr1_4:5983224-5983243 Msa0146260:three_prime_UTR 50.0%
CTATGTCCCCGGGGTTATAA+CGG + chr1_4:5983233-5983252 Msa0146260:three_prime_UTR 50.0%
TATGTCCCCGGGGTTATAAC+GGG + chr1_4:5983234-5983253 Msa0146260:three_prime_UTR 50.0%
CTGCTTGTTTGAATGGCGTG+AGG + chr1_4:5983257-5983276 Msa0146260:three_prime_UTR 50.0%
GATGAGCAGGGTCTAGAAAG+AGG - chr1_4:5983500-5983519 None:intergenic 50.0%
CTTTCTAGACCCTGCTCATC+CGG + chr1_4:5983500-5983519 Msa0146260:three_prime_UTR 50.0%
TTTCTAGACCCTGCTCATCC+GGG + chr1_4:5983501-5983520 Msa0146260:three_prime_UTR 50.0%
ACATGGTGCACTAAAGCTCC+CGG - chr1_4:5983522-5983541 None:intergenic 50.0%
! TTTCTCGCCACCATGACGGA+CGG + chr1_4:5977439-5977458 Msa0146260:exon 55.0%
GAAGAGATGACCGTCCGTCA+TGG - chr1_4:5977452-5977471 None:intergenic 55.0%
!! CGGACATAACGGGCGTAACA+TGG + chr1_4:5978703-5978722 Msa0146260:CDS 55.0%
CTCCCCAACAGTTACTCCGA+AGG - chr1_4:5979049-5979068 None:intergenic 55.0%
GACAAACTCACCTGAGCAGG+AGG - chr1_4:5980140-5980159 None:intergenic 55.0%
!! ATGGCTGATGTTGGTGCTGG+AGG + chr1_4:5980256-5980275 Msa0146260:CDS 55.0%
GTCTGCCCTTTCCGAATAGG+AGG - chr1_4:5980738-5980757 None:intergenic 55.0%
CTGCTCCTCAAGAGCTGCTT+TGG + chr1_4:5981023-5981042 Msa0146260:intron 55.0%
GGAGGCAAAGTTACCAAGCC+TGG + chr1_4:5981206-5981225 Msa0146260:CDS 55.0%
TTTGAGCGACATGCTGCTGG+TGG + chr1_4:5981491-5981510 Msa0146260:CDS 55.0%
GTCCTGCCCATGCAGTTCTA+AGG + chr1_4:5981688-5981707 Msa0146260:intron 55.0%
GCTGATGCCCAACCAACTGT+TGG + chr1_4:5981731-5981750 Msa0146260:CDS 55.0%
TGCCCAACCAACTGTTGGTG+TGG + chr1_4:5981736-5981755 Msa0146260:CDS 55.0%
GGCCACACCAACAGTTGGTT+GGG - chr1_4:5981741-5981760 None:intergenic 55.0%
TGGCCACACCAACAGTTGGT+TGG - chr1_4:5981742-5981761 None:intergenic 55.0%
ACCAACTGTTGGTGTGGCCA+AGG + chr1_4:5981742-5981761 Msa0146260:CDS 55.0%
ACCTTGGCCACACCAACAGT+TGG - chr1_4:5981746-5981765 None:intergenic 55.0%
CCTCTGTCTCACCACCACTT+TGG - chr1_4:5982344-5982363 None:intergenic 55.0%
! CCAAAGTGGTGGTGAGACAG+AGG + chr1_4:5982341-5982360 Msa0146260:CDS 55.0%
!! ACGGACGTGGGAAGAGTACT+TGG + chr1_4:5982752-5982771 Msa0146260:CDS 55.0%
AAGCAGCCCGTTATAACCCC+GGG - chr1_4:5983243-5983262 None:intergenic 55.0%
CAAGCAGCCCGTTATAACCC+CGG - chr1_4:5983244-5983263 None:intergenic 55.0%
TTGAATGGCGTGAGGAAGGC+TGG + chr1_4:5983265-5983284 Msa0146260:three_prime_UTR 55.0%
AGGAAGGCTGGAGAAGGATG+AGG + chr1_4:5983277-5983296 Msa0146260:three_prime_UTR 55.0%
CTAAAGCTCCCGGATGAGCA+GGG - chr1_4:5983512-5983531 None:intergenic 55.0%
ACTAAAGCTCCCGGATGAGC+AGG - chr1_4:5983513-5983532 None:intergenic 55.0%
GAGATGACCGTCCGTCATGG+TGG - chr1_4:5977449-5977468 None:intergenic 60.0%
TGAAGATCGCCCTCCTGCTC+AGG + chr1_4:5980127-5980146 Msa0146260:CDS 60.0%
GGCGAACCACACTGCTGTAC+TGG - chr1_4:5980524-5980543 None:intergenic 60.0%
GCCCTTAGAACTGCATGGGC+AGG - chr1_4:5981693-5981712 None:intergenic 60.0%
GCGCTCGAGATGTGGATCGA+CGG - chr1_4:5981792-5981811 None:intergenic 60.0%
GTCTTGTGGGAGGCTGCATG+TGG + chr1_4:5982178-5982197 Msa0146260:intron 60.0%
!! GCACCTAAGAGGGCACTGTC+TGG + chr1_4:5982581-5982600 Msa0146260:CDS 60.0%
AGCAGCCCGTTATAACCCCG+GGG - chr1_4:5983242-5983261 None:intergenic 60.0%
AACATTACCCTCGGCGGCCG+TGG + chr1_4:5977475-5977494 Msa0146260:CDS 65.0%
!! GAGAGCTTACGGTGCCGCCA+CGG - chr1_4:5977495-5977514 None:intergenic 65.0%
TGTGGGAGGCTGCATGTGGC+AGG + chr1_4:5982182-5982201 Msa0146260:intron 65.0%
GGCGTGAGGAAGGCTGGAGA+AGG + chr1_4:5983271-5983290 Msa0146260:three_prime_UTR 65.0%
ATTACCCTCGGCGGCCGTGG+CGG + chr1_4:5977478-5977497 Msa0146260:CDS 70.0%
!! GGTGCCGCCACGGCCGCCGA+GGG - chr1_4:5977485-5977504 None:intergenic 85.0%
!!! CGGTGCCGCCACGGCCGCCG+AGG - chr1_4:5977486-5977505 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 5977381 5983591 5977381 ID=Msa0146260;Name=Msa0146260
chr1_4 mRNA 5977381 5983591 5977381 ID=Msa0146260-mRNA-1;Parent=Msa0146260;Name=Msa0146260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=70|0.93|0.93|1|1|1|16|539|646
chr1_4 exon 5977381 5977504 5977381 ID=Msa0146260-mRNA-1:exon:2529;Parent=Msa0146260-mRNA-1
chr1_4 exon 5978621 5978806 5978621 ID=Msa0146260-mRNA-1:exon:2530;Parent=Msa0146260-mRNA-1
chr1_4 exon 5979012 5979117 5979012 ID=Msa0146260-mRNA-1:exon:2531;Parent=Msa0146260-mRNA-1
chr1_4 exon 5979740 5979876 5979740 ID=Msa0146260-mRNA-1:exon:2532;Parent=Msa0146260-mRNA-1
chr1_4 exon 5980065 5980148 5980065 ID=Msa0146260-mRNA-1:exon:2533;Parent=Msa0146260-mRNA-1
chr1_4 exon 5980232 5980326 5980232 ID=Msa0146260-mRNA-1:exon:2534;Parent=Msa0146260-mRNA-1
chr1_4 exon 5980452 5980560 5980452 ID=Msa0146260-mRNA-1:exon:2535;Parent=Msa0146260-mRNA-1
chr1_4 exon 5980696 5980782 5980696 ID=Msa0146260-mRNA-1:exon:2536;Parent=Msa0146260-mRNA-1
chr1_4 exon 5980880 5980972 5980880 ID=Msa0146260-mRNA-1:exon:2537;Parent=Msa0146260-mRNA-1
chr1_4 exon 5981161 5981358 5981161 ID=Msa0146260-mRNA-1:exon:2538;Parent=Msa0146260-mRNA-1
chr1_4 exon 5981476 5981621 5981476 ID=Msa0146260-mRNA-1:exon:2539;Parent=Msa0146260-mRNA-1
chr1_4 exon 5981703 5981850 5981703 ID=Msa0146260-mRNA-1:exon:2540;Parent=Msa0146260-mRNA-1
chr1_4 exon 5982264 5982362 5982264 ID=Msa0146260-mRNA-1:exon:2541;Parent=Msa0146260-mRNA-1
chr1_4 exon 5982455 5982634 5982455 ID=Msa0146260-mRNA-1:exon:2542;Parent=Msa0146260-mRNA-1
chr1_4 exon 5982719 5982806 5982719 ID=Msa0146260-mRNA-1:exon:2543;Parent=Msa0146260-mRNA-1
chr1_4 exon 5982922 5983591 5982922 ID=Msa0146260-mRNA-1:exon:2544;Parent=Msa0146260-mRNA-1
chr1_4 five_prime_UTR 5977381 5977450 5977381 ID=Msa0146260-mRNA-1:five_prime_utr;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5977451 5977504 5977451 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5978621 5978806 5978621 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5979012 5979117 5979012 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5979740 5979876 5979740 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5980065 5980148 5980065 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5980232 5980326 5980232 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5980452 5980560 5980452 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5980696 5980782 5980696 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5980880 5980972 5980880 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5981161 5981358 5981161 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5981476 5981621 5981476 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5981703 5981850 5981703 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5982264 5982362 5982264 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5982455 5982634 5982455 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5982719 5982806 5982719 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 CDS 5982922 5983052 5982922 ID=Msa0146260-mRNA-1:cds;Parent=Msa0146260-mRNA-1
chr1_4 three_prime_UTR 5983053 5983591 5983053 ID=Msa0146260-mRNA-1:three_prime_utr;Parent=Msa0146260-mRNA-1
Gene Sequence

>Msa0146260

ATGACGGACGGTCATCTCTTCAACAACATTACCCTCGGCGGCCGTGGCGGCACCAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGCAAATCAATTGATGTTGATAAGGCGGACATAACGGGCGTAACATGGATGAAGGTTCCAAAGACAAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGTTTCCGTGATCAGGATGTTGTAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAACGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCCCAAACAAACCTTCAAGGGAAAAATGATGTGATGTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCATGTACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAGATCGCCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAATTACACTTGTCATTTTTGCGGCTTCAGGGACAGGCTAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCATTATTAGTCTTGATCCTCCTATTCGGAAAGGGCAGACTTTGTACCCTCATATCGTGATGCAGTTTGAAACTGATTATGTGGTTGAAAGTGAATTGGCAATGAGTGAAGATCTTTATAACTCAAAGTACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTGTTTACCACAATATTGCGTGGTTTGTCCGGAGGCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAACATGCATTACTTTGACCTTCTTATCAGACTCAAATCTGAGCAAGAGCATCTCTTCCGAAATATTCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCTAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCCGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAACCTGCCAAGAAGGAACCAAAGAAGGATTTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGACGAAGGAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGATCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAAAAATGGAAAAATCTGTCGGGTATGGCTGCGGAGGAGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAGCGTTACAAGGATGAGATGAGTGGTTACAACAAGAATCCTCAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA
Protein sequence

>Msa0146260

MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVMLEFHVDDTTGANEKDSLMEMSFHVPSSNTQFVGDEDRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKASTSKKKSKDADDEGGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSGMAAEEKEPYEAKAQEDKKRYKDEMSGYNKNPQPMNIDSGNESDSA*