AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0969330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969330 MtrunA17_Chr6g0449281 96.316 923 13 2 1 910 1 915 0.0 1793
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969330 AT3G27530.1 65.461 912 288 6 3 896 1 903 0.0 1169

Find 208 sgRNAs with CRISPR-Local

Find 508 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTCTCACTACAATTT+TGG 0.103699 6_4:-825711 Msa0969330:CDS
TCCCTTTAGTAGCAATTTAA+TGG 0.167600 6_4:+829057 None:intergenic
GAATTGATGAAAATCGAAAT+TGG 0.196919 6_4:+832603 None:intergenic
CTCATGGAATGAATGATTTA+TGG 0.198357 6_4:+827831 None:intergenic
GATATAATAAGTCAGAAAAT+TGG 0.214697 6_4:-825902 Msa0969330:CDS
CTCTTCTGCTCTATTTCTTC+TGG 0.216042 6_4:+825590 None:intergenic
AGTTGCCTCGGATTCAATTT+TGG 0.217310 6_4:+824789 None:intergenic
ATTTGCGAGAAAGAAATTTA+AGG 0.224738 6_4:-824196 Msa0969330:three_prime_UTR
TATAATGTTGGGCGTCTTAA+AGG 0.225470 6_4:-831348 Msa0969330:CDS
GCATCGAATGGTGAAATATT+TGG 0.231055 6_4:-826206 Msa0969330:CDS
TTTAAGACGCCCAACATTAT+AGG 0.236390 6_4:+831350 None:intergenic
ACTTCATTACTTGGTCCTTT+TGG 0.236471 6_4:+830793 None:intergenic
CTTCAAAGACGACGATCTTT+TGG 0.239201 6_4:+829554 None:intergenic
TGGATTAGACTTTCCATCTT+TGG 0.240722 6_4:+826162 None:intergenic
TGTACAGCTAACTCAAATTA+TGG 0.245262 6_4:-824368 Msa0969330:three_prime_UTR
GAGGATGTTCATATGTCTTT+TGG 0.246476 6_4:-827808 Msa0969330:CDS
TGACTTCTTCTTCAGGTTAC+AGG 0.267964 6_4:-830375 Msa0969330:CDS
TGTTCTATCTCATATATTAA+AGG 0.274403 6_4:-827447 Msa0969330:CDS
CTCTACGGAGTGTCTCTATT+TGG 0.276400 6_4:+824860 None:intergenic
TGTCAGAAACAGTTTGTATA+AGG 0.279252 6_4:-826006 Msa0969330:CDS
CCCTCTTCTTCTAAGTTTGT+TGG 0.284008 6_4:-830719 Msa0969330:intron
CTTCTTGCTAGCAAAGTTCT+TGG 0.288001 6_4:-828206 Msa0969330:CDS
TTATTCTGAGTATAGAATTC+AGG 0.299006 6_4:+828159 None:intergenic
TCGGCTAATGGACATGCTTA+TGG 0.304430 6_4:-830321 Msa0969330:CDS
AATGAATGATTTATGGAATA+TGG 0.305224 6_4:+827838 None:intergenic
TCCAAAATTGTAGTGAGAAT+TGG 0.310219 6_4:+825710 None:intergenic
AAAGCTTTCCAGTTAGCATT+TGG 0.317728 6_4:-831474 Msa0969330:CDS
ATCTCCAAGAAGCATCTAAA+AGG 0.329364 6_4:-824837 Msa0969330:CDS
ATTAGGCATTGAGATGTATT+GGG 0.331445 6_4:-828262 Msa0969330:intron
CTTCAAGACACAGTTCTTGC+TGG 0.340537 6_4:-824300 Msa0969330:three_prime_UTR
TGTATTGGGGATTTAATTGC+TGG 0.343320 6_4:-828248 Msa0969330:CDS
AAGCTTTCCAGTTAGCATTT+GGG 0.347741 6_4:-831473 Msa0969330:CDS
GGAGGTTCTGAGGCTGATCC+TGG 0.348630 6_4:-829037 Msa0969330:CDS
CTGGACAGTATGTTGATATT+AGG 0.353105 6_4:-828865 Msa0969330:CDS
CATTAGGCATTGAGATGTAT+TGG 0.357978 6_4:-828263 Msa0969330:intron
CAGGATCTTGTTATTCGAAA+TGG 0.358756 6_4:-824961 Msa0969330:CDS
TTCTTTCTCGCAAATTTGAT+TGG 0.365084 6_4:+824204 None:intergenic
GAATCCGTGAGCTATGAAAA+TGG 0.368721 6_4:-832543 Msa0969330:exon
AGGAAGCAGTGCACTGCATT+GGG 0.369828 6_4:+826076 None:intergenic
CCATTGCCCCAAATGCTAAC+TGG 0.371409 6_4:+831466 None:intergenic
CCCTCACTGACTTCTTCTTC+AGG 0.375359 6_4:-830382 Msa0969330:CDS
CCGCGGTATAACTCGGCTAA+TGG 0.379040 6_4:-830333 Msa0969330:CDS
ATGAAAATGGATTTAATGTC+TGG 0.381784 6_4:-832530 Msa0969330:CDS
AATTGATGAAAATCGAAATT+GGG 0.386866 6_4:+832604 None:intergenic
GTCAGAAACAGTTTGTATAA+GGG 0.393928 6_4:-826005 Msa0969330:CDS
TAGTGCTAGGTTGTTGGAGT+TGG 0.397357 6_4:-824515 Msa0969330:CDS
TCTGGTTGAACTTCATTACT+TGG 0.403843 6_4:+830784 None:intergenic
ACCATTAAATTGCTACTAAA+GGG 0.405073 6_4:-829058 Msa0969330:CDS
ACCGCACAGCGAACTGCAAC+AGG 0.405621 6_4:+828823 None:intergenic
ATATAATAAGTCAGAAAATT+GGG 0.409325 6_4:-825901 Msa0969330:CDS
CAGTTAGCATTTGGGGCAAT+GGG 0.411140 6_4:-831465 Msa0969330:intron
AAATAAGACAGCTCTGGTTC+AGG 0.411566 6_4:-828993 Msa0969330:intron
CAAAAGATCGTCGTCTTTGA+AGG 0.413562 6_4:-829553 Msa0969330:CDS
AACATACCCTTTCCTTGCAT+TGG 0.414968 6_4:+827417 None:intergenic
ATAGCATTTCTTCTGTCATC+TGG 0.415540 6_4:+831528 None:intergenic
AACCATTAAATTGCTACTAA+AGG 0.420583 6_4:-829059 Msa0969330:CDS
TTCACCATTCGATGCATTAG+TGG 0.421258 6_4:+826214 None:intergenic
CACTTACTCTTTGCTCAGAC+TGG 0.421800 6_4:+824899 None:intergenic
TCGTAGCAATGTATCCAATC+AGG 0.421858 6_4:-829349 Msa0969330:intron
AAATCAGTATTCATCAAATC+TGG 0.425629 6_4:+830766 None:intergenic
AGTGCTAGGTTGTTGGAGTT+GGG 0.430453 6_4:-824514 Msa0969330:CDS
CCAGTTAGCATTTGGGGCAA+TGG 0.432100 6_4:-831466 Msa0969330:CDS
CTTCTGGCACTACTGTTACC+TGG 0.435728 6_4:+825606 None:intergenic
AGAAGGACCCTCAACATTCC+CGG 0.438413 6_4:-824650 Msa0969330:CDS
AGAAGATATTCAGTATCATA+AGG 0.439417 6_4:-829522 Msa0969330:CDS
TAGACTTAGTGCTAGGTTGT+TGG 0.440436 6_4:-824521 Msa0969330:CDS
CTATTACACGGTCTTACGTT+GGG 0.442372 6_4:-827603 Msa0969330:CDS
GGATTTAATGTCTGGTTACA+AGG 0.443940 6_4:-832522 Msa0969330:intron
TTACCTCAGCTTCACGGGTC+AGG 0.443998 6_4:+829689 None:intergenic
ACCAACAAACTTAGAAGAAG+AGG 0.450545 6_4:+830718 None:intergenic
TGCAGCTCCTAATGATTGCA+TGG 0.452764 6_4:+826240 None:intergenic
GAGGCACCCATGCAATCATT+AGG 0.454933 6_4:-826247 Msa0969330:CDS
CAGCTAACTCAAATTATGGT+TGG 0.462210 6_4:-824364 Msa0969330:three_prime_UTR
CTTTCACCTCATTCTCCAGT+TGG 0.464880 6_4:+824683 None:intergenic
TGGTACATTGGCCGAGGACC+TGG 0.465456 6_4:-824941 Msa0969330:CDS
CTTGCAGGTTCGTGGTGCCT+TGG 0.467862 6_4:-830851 Msa0969330:intron
TAGGAAGCAGTGCACTGCAT+TGG 0.468081 6_4:+826075 None:intergenic
CAGTCTGAGCAAAGAGTAAG+TGG 0.470796 6_4:-824898 Msa0969330:CDS
TAAAAGGTTGGAGATGCTTA+AGG 0.471362 6_4:-824821 Msa0969330:CDS
ACCCTCAACATTCCCGGATG+TGG 0.472840 6_4:-824644 Msa0969330:CDS
TAGGTTGTTGGAGTTGGGAG+AGG 0.476758 6_4:-824509 Msa0969330:CDS
TATTCTGAGTATAGAATTCA+GGG 0.476866 6_4:+828160 None:intergenic
ATGTTGAGCGTTTGCTTGAT+CGG 0.479787 6_4:-831569 Msa0969330:CDS
ACTATGTATCAGAATTTAGC+TGG 0.480799 6_4:-824769 Msa0969330:CDS
AGAACGTAATGATGTTGAAA+TGG 0.482460 6_4:-831324 Msa0969330:intron
CTCCAATGCCTTCAAGTAGT+TGG 0.483847 6_4:+824479 None:intergenic
GAAGCAACACTCTGAGATAC+AGG 0.484950 6_4:-825519 Msa0969330:intron
TATAGAATTCAGGGCAGGTT+CGG 0.489062 6_4:+828169 None:intergenic
TCAAATTGTTCAGCAATTCA+AGG 0.492873 6_4:+829373 None:intergenic
TGAGCAATCTAATCTCCAAC+TGG 0.496949 6_4:-824698 Msa0969330:CDS
ATTGGGGCAATCTGCTAGCC+AGG 0.501980 6_4:+826093 None:intergenic
TATCAATGAATCAAATCCTA+TGG 0.502065 6_4:+829241 None:intergenic
TGATTTATGGAATATGGTTG+TGG 0.502146 6_4:+827844 None:intergenic
GGAGATGCTTAAGGCAGAAA+AGG 0.502282 6_4:-824812 Msa0969330:CDS
CCAAGAAGCATCTAAAAGGT+TGG 0.502752 6_4:-824833 Msa0969330:CDS
AAAAGGTTACCTCAGCTTCA+CGG 0.504484 6_4:+829683 None:intergenic
ACAGAGTCAACAAACCTGAT+TGG 0.504863 6_4:+829335 None:intergenic
ATCTTTGGATTTCATTGAAG+AGG 0.505262 6_4:+826177 None:intergenic
GATGGAAAGTCTAATCCATC+GGG 0.505732 6_4:-826157 Msa0969330:CDS
TCAGAATTTAGCTGGAAAGA+TGG 0.509840 6_4:-824761 Msa0969330:CDS
TAAGGTGTGGTCGAGCATCT+AGG 0.509927 6_4:+826056 None:intergenic
TATAACAAATCCACAGATAG+CGG 0.509972 6_4:-825947 Msa0969330:CDS
AAAGGTTACCTCAGCTTCAC+GGG 0.511591 6_4:+829684 None:intergenic
ATTATATCCTTGCAGGTTCG+TGG 0.511699 6_4:-830859 Msa0969330:intron
CTCCACATCCGGGAATGTTG+AGG 0.512219 6_4:+824642 None:intergenic
ACTCCTATTAATCATCCAAA+AGG 0.513136 6_4:-830808 Msa0969330:CDS
TCCACATCCGGGAATGTTGA+GGG 0.513884 6_4:+824643 None:intergenic
AGCAAGAGAAGAAGCTCTGA+AGG 0.513922 6_4:-824605 Msa0969330:CDS
AGCTTTCCAGTTAGCATTTG+GGG 0.514126 6_4:-831472 Msa0969330:CDS
ATGATCTGCTTGTATGCCTC+GGG 0.515345 6_4:-824564 Msa0969330:CDS
TTAAGGTTCGAATCAGAAGA+AGG 0.518239 6_4:+832672 None:intergenic
GTGAAAGCACTGAGGGGAGA+AGG 0.521373 6_4:-824667 Msa0969330:CDS
AGTTCTTGGAGAGGAGCCGC+AGG 0.523096 6_4:-828192 Msa0969330:CDS
TCTTCAATGAAATCCAAAGA+TGG 0.523114 6_4:-826175 Msa0969330:CDS
TGTTTATTAGCATCTTTCCC+AGG 0.524217 6_4:+829019 None:intergenic
TATTAGGTGTTGAAAGCCAA+TGG 0.525069 6_4:-828849 Msa0969330:CDS
TAATCTCCAACTGGAGAATG+AGG 0.528085 6_4:-824689 Msa0969330:CDS
TCAGAAACAGTTTGTATAAG+GGG 0.528109 6_4:-826004 Msa0969330:CDS
GCCGAGGACCTGGCTAAGAC+AGG 0.528464 6_4:-824931 Msa0969330:CDS
CTAGCTCAAGAAGATAAGTA+AGG 0.530499 6_4:+826038 None:intergenic
GGATTTCATTGAAGAGGTGA+GGG 0.532305 6_4:+826183 None:intergenic
CTCAAGGCTATTGTATGCAT+CGG 0.535787 6_4:+824717 None:intergenic
CCTTGCTTTGTTCTTGCCCG+AGG 0.536935 6_4:+824548 None:intergenic
CAATCTCCAATGCAAGGAAA+GGG 0.537286 6_4:-827423 Msa0969330:intron
AACTACTACCTGTCTTAGCC+AGG 0.540435 6_4:+824923 None:intergenic
GATGTTGACCAACTACTTGA+AGG 0.541260 6_4:-824487 Msa0969330:CDS
TTCAGGGCAGGTTCGGCCTG+CGG 0.541652 6_4:+828176 None:intergenic
ATTCAGTATCATAAGGGAGG+AGG 0.541955 6_4:-829515 Msa0969330:CDS
GCTATTACACGGTCTTACGT+TGG 0.542590 6_4:-827604 Msa0969330:CDS
ACATATGAACATCCTCCTCA+TGG 0.545850 6_4:+827815 None:intergenic
TGGATTTCATTGAAGAGGTG+AGG 0.546280 6_4:+826182 None:intergenic
AGATGGTGGTGTAGTTGTGC+AGG 0.546958 6_4:-829485 Msa0969330:intron
CTGACTTATTATATCAACAA+TGG 0.547500 6_4:+825910 None:intergenic
ATGCTTCTTGGAGATCTCTA+CGG 0.548408 6_4:+824845 None:intergenic
AATGATCTGCTTGTATGCCT+CGG 0.550054 6_4:-824565 Msa0969330:CDS
GAAGGCATTGGAGATGATGC+TGG 0.553705 6_4:-824469 Msa0969330:CDS
TGTTATTCGAAATGGTACAT+TGG 0.553981 6_4:-824953 Msa0969330:CDS
GCGTAGACGCTAGCATTGCT+TGG 0.554715 6_4:+827872 None:intergenic
TGCACTAACAAGAGTTTCCA+AGG 0.555234 6_4:+830834 None:intergenic
CAGGTGAGTAAGAAGCAGTA+AGG 0.555424 6_4:+829708 None:intergenic
TGCATCTTTCCCGCTATCTG+TGG 0.555715 6_4:+825937 None:intergenic
TCGAAATGGTACATTGGCCG+AGG 0.555789 6_4:-824947 Msa0969330:CDS
ACAATCTCCAATGCAAGGAA+AGG 0.556110 6_4:-827424 Msa0969330:CDS
ATAACAAATCCACAGATAGC+GGG 0.556615 6_4:-825946 Msa0969330:CDS
GAATGAGGTGAAAGCACTGA+GGG 0.557554 6_4:-824674 Msa0969330:CDS
GAAGATATTCAGTATCATAA+GGG 0.558030 6_4:-829521 Msa0969330:CDS
ATTAGGTGTTGAAAGCCAAT+GGG 0.561629 6_4:-828848 Msa0969330:CDS
GAGATCTTCAGCAGCTAGCA+TGG 0.565527 6_4:-825789 Msa0969330:CDS
ATTCTGATACATAGTTGCCT+CGG 0.567736 6_4:+824777 None:intergenic
AGATGGAAAGTCTAATCCAT+CGG 0.567871 6_4:-826158 Msa0969330:CDS
CAGAAGAGAGGCGAAAGTGA+TGG 0.575651 6_4:-825575 Msa0969330:CDS
CTTCCAGGTGATAAGAAATG+AGG 0.577509 6_4:-829731 Msa0969330:intron
GACCAACTACTTGAAGGCAT+TGG 0.577561 6_4:-824481 Msa0969330:CDS
CTGAGTATAGAATTCAGGGC+AGG 0.578607 6_4:+828164 None:intergenic
TTAGGCATTGAGATGTATTG+GGG 0.578774 6_4:-828261 Msa0969330:intron
ACCTGTCTTAGCCAGGTCCT+CGG 0.579485 6_4:+824930 None:intergenic
GAGGTTCTGAGGCTGATCCT+GGG 0.579669 6_4:-829036 Msa0969330:CDS
GCAAAGAGTAAGTGGAGGCA+TGG 0.581767 6_4:-824890 Msa0969330:CDS
TGCTAGCAAAGTTCTTGGAG+AGG 0.583453 6_4:-828201 Msa0969330:CDS
CCAACAAACTTAGAAGAAGA+GGG 0.583467 6_4:+830719 None:intergenic
GTTGGAGATTAGATTGCTCA+AGG 0.585113 6_4:+824701 None:intergenic
CTGTCGAGAATTACTGAGAA+GGG 0.587231 6_4:+830515 None:intergenic
TTCAGTATCATAAGGGAGGA+GGG 0.588314 6_4:-829514 Msa0969330:CDS
CTTACGTTGGGTGAAAATGA+TGG 0.589032 6_4:-827591 Msa0969330:CDS
CTCAACATTCCCGGATGTGG+AGG 0.590364 6_4:-824641 Msa0969330:CDS
AAAGGACAATCTCCAATGCA+AGG 0.590795 6_4:-827429 Msa0969330:CDS
GCTACTAAAGGGAGGTTCTG+AGG 0.602501 6_4:-829047 Msa0969330:CDS
ACCTGTTGCAGTTCGCTGTG+CGG 0.603328 6_4:-828824 Msa0969330:intron
TGCTGAAGATGTCGAAGACG+AGG 0.604461 6_4:-824443 Msa0969330:CDS
GAGGAGGGAAATTCAGATGG+TGG 0.604849 6_4:-829499 Msa0969330:CDS
ATTAAATTGCTACTAAAGGG+AGG 0.604946 6_4:-829055 Msa0969330:CDS
TTGATTGGCTAACACGACAA+AGG 0.605466 6_4:+824219 None:intergenic
GCAGCTCCTAATGATTGCAT+GGG 0.605658 6_4:+826241 None:intergenic
GAAGAAATAGAGCAGAAGAG+AGG 0.612954 6_4:-825587 Msa0969330:CDS
AAAGGCCAAAATTGAATCCG+AGG 0.614744 6_4:-824794 Msa0969330:CDS
ACTTTCAGCATGCTATTACA+CGG 0.615199 6_4:-827615 Msa0969330:intron
AGGTGGATAGACTTAGTGCT+AGG 0.616666 6_4:-824528 Msa0969330:CDS
TGAGCGTATGAATTTCCCGA+TGG 0.618009 6_4:+826142 None:intergenic
TCACCTGACCCGTGAAGCTG+AGG 0.618628 6_4:-829692 Msa0969330:intron
AAATCATTCATTCCATGAGG+AGG 0.627668 6_4:-827827 Msa0969330:CDS
TGAAAATGATGGTGATCTTG+AGG 0.627908 6_4:-827580 Msa0969330:intron
GAACTGCAACAGGTACCCAT+TGG 0.628157 6_4:+828833 None:intergenic
TTGCTTGATCGGATAAACAA+TGG 0.628755 6_4:-831558 Msa0969330:CDS
TATTAGAGAACAGATTGTGG+AGG 0.628847 6_4:-825648 Msa0969330:CDS
GATATTCAGTATCATAAGGG+AGG 0.629554 6_4:-829518 Msa0969330:CDS
TCTGTCGAGAATTACTGAGA+AGG 0.633163 6_4:+830514 None:intergenic
GGACATGCTTATGGATCGTG+AGG 0.635290 6_4:-830312 Msa0969330:intron
GAAGCTCTGAAGGAGAGTGA+AGG 0.637129 6_4:-824595 Msa0969330:CDS
CCTCGGGCAAGAACAAAGCA+AGG 0.643346 6_4:-824548 Msa0969330:CDS
CATTAGCCGAGTTATACCGC+GGG 0.643962 6_4:+830334 None:intergenic
AAATATTAGAGAACAGATTG+TGG 0.646986 6_4:-825651 Msa0969330:CDS
AGAACCACTAATGCATCGAA+TGG 0.648345 6_4:-826218 Msa0969330:CDS
AGGGAGGAGGGAAATTCAGA+TGG 0.650411 6_4:-829502 Msa0969330:CDS
CATAAATCATTCATTCCATG+AGG 0.652425 6_4:-827830 Msa0969330:CDS
GGAAGCAGTGCACTGCATTG+GGG 0.654074 6_4:+826077 None:intergenic
GTGATGGTGAATATATAAAG+CGG 0.654240 6_4:-825559 Msa0969330:CDS
GTACTACTCAGAGAGACCAT+AGG 0.657625 6_4:-829257 Msa0969330:CDS
TCAAGAAGATAAGTAAGGTG+TGG 0.659005 6_4:+826043 None:intergenic
TTCTCAGTAATTCTCGACAG+AGG 0.673788 6_4:-830512 Msa0969330:intron
TCTGAGCAAAGAGTAAGTGG+AGG 0.686096 6_4:-824895 Msa0969330:CDS
ACCTGAAGAAGAAGTCAGTG+AGG 0.692767 6_4:+830381 None:intergenic
CCTGAAGAAGAAGTCAGTGA+GGG 0.692908 6_4:+830382 None:intergenic
AGAATGAGGTGAAAGCACTG+AGG 0.703852 6_4:-824675 Msa0969330:CDS
CGGGCAAGAACAAAGCAAGG+TGG 0.713272 6_4:-824545 Msa0969330:CDS
AATGAGGTGAAAGCACTGAG+GGG 0.725813 6_4:-824673 Msa0969330:CDS
CCATTAGCCGAGTTATACCG+CGG 0.727910 6_4:+830333 None:intergenic
ATTAGCCGAGTTATACCGCG+GGG 0.773228 6_4:+830335 None:intergenic
TTAGCCGAGTTATACCGCGG+GGG 0.827159 6_4:+830336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATCTAAAAAC+TGG - chr6_4:824921-824940 Msa0969330:CDS 10.0%
!! AAAAAAGTTTAAGAAAAATA+AGG + chr6_4:827231-827250 None:intergenic 10.0%
!! TCTTATCTAAATAAATTTAA+TGG - chr6_4:827269-827288 Msa0969330:intron 10.0%
!!! AAAAAATCACTTTTAGAAAA+AGG - chr6_4:824705-824724 Msa0969330:CDS 15.0%
!!! TTAATCTATTAAATTTTCAC+AGG - chr6_4:825100-825119 Msa0969330:intron 15.0%
!!! TAATCTATTAAATTTTCACA+GGG - chr6_4:825101-825120 Msa0969330:intron 15.0%
!! ATAAAAAAGCCATATATTAA+AGG + chr6_4:825775-825794 None:intergenic 15.0%
!!! TGAATTTTAAGTAATGTTTA+AGG - chr6_4:826882-826901 Msa0969330:intron 15.0%
!! TAAATAAATTTAATGGTTAC+AGG - chr6_4:827276-827295 Msa0969330:intron 15.0%
!! GAAAAAAAGAAAAACAAAAT+TGG + chr6_4:828488-828507 None:intergenic 15.0%
!!! TTTTCTTTTTTCATTTCATT+TGG + chr6_4:829718-829737 None:intergenic 15.0%
!! ATCAGATTAAATAAACTTAT+AGG - chr6_4:830099-830118 Msa0969330:intron 15.0%
!! TCAGATTAAATAAACTTATA+GGG - chr6_4:830100-830119 Msa0969330:intron 15.0%
!! ATCATTATGTATAAATGTAT+GGG + chr6_4:830498-830517 None:intergenic 15.0%
!! TATCATTATGTATAAATGTA+TGG + chr6_4:830499-830518 None:intergenic 15.0%
!!! GAAATTTTAAAAAATGTTTC+AGG - chr6_4:830570-830589 Msa0969330:intron 15.0%
!! ATATAATAAGTCAGAAAATT+GGG - chr6_4:830956-830975 Msa0969330:intron 15.0%
!! TCAATGTTAATAAAAAACTA+CGG + chr6_4:831512-831531 None:intergenic 15.0%
!!! ATTTTGTAGTTGTTTTTAAA+TGG - chr6_4:831549-831568 Msa0969330:CDS 15.0%
!! CTTTAACAAATTTATCAATA+TGG - chr6_4:831809-831828 Msa0969330:intron 15.0%
!!! TTTTTGTCTTAACACAAATT+AGG - chr6_4:824217-824236 Msa0969330:three_prime_UTR 20.0%
!!! TTTTGTCTTAACACAAATTA+GGG - chr6_4:824218-824237 Msa0969330:three_prime_UTR 20.0%
!! AATTGATGAAAATCGAAATT+GGG + chr6_4:824256-824275 None:intergenic 20.0%
!! TAAAATTGAAGAGAGTAATT+AGG + chr6_4:824373-824392 None:intergenic 20.0%
!! AAAAAAACACTATAACAAAG+AGG + chr6_4:824660-824679 None:intergenic 20.0%
!!! TTTGTTATAGTGTTTTTTTG+TGG - chr6_4:824661-824680 Msa0969330:CDS 20.0%
!!! TTTTTATAAACCGTAACAAA+TGG - chr6_4:825073-825092 Msa0969330:intron 20.0%
!!! TTTTATAAACCGTAACAAAT+GGG - chr6_4:825074-825093 Msa0969330:intron 20.0%
!! ACTTACATAAAGATCAAAAA+CGG + chr6_4:825224-825243 None:intergenic 20.0%
!! TGTTAATGTTATGTATCAAT+AGG - chr6_4:825264-825283 Msa0969330:intron 20.0%
!! TAAAAATTAACTTATCGAAG+TGG + chr6_4:825628-825647 None:intergenic 20.0%
!!! TTTATTTACCAATTTGGAAT+TGG - chr6_4:825790-825809 Msa0969330:CDS 20.0%
!! TATATAATGGTACACATATA+GGG + chr6_4:825950-825969 None:intergenic 20.0%
!! TTATATAATGGTACACATAT+AGG + chr6_4:825951-825970 None:intergenic 20.0%
!! TTAAAACGGTTAAAAGTAAT+GGG + chr6_4:826810-826829 None:intergenic 20.0%
!!! ATTACTTTTAACCGTTTTAA+GGG - chr6_4:826810-826829 Msa0969330:intron 20.0%
!! TTATAAAACTACCCTTAAAA+CGG + chr6_4:826824-826843 None:intergenic 20.0%
!!! GTATTTCTTTTTGAAAAATG+TGG - chr6_4:826912-826931 Msa0969330:intron 20.0%
!!! CTTAAACTTTTTTCATTATG+CGG - chr6_4:827238-827257 Msa0969330:intron 20.0%
!!! AATTTGCTTTATATAGCTTT+TGG - chr6_4:827428-827447 Msa0969330:CDS 20.0%
!!! TTTTGGTCTAAATAATTCTT+TGG - chr6_4:827445-827464 Msa0969330:CDS 20.0%
!!! TTATTCTTTTACTCAACAAA+AGG - chr6_4:827665-827684 Msa0969330:intron 20.0%
!! AAGTATTCTTCTTGATAAAT+CGG - chr6_4:828324-828343 Msa0969330:intron 20.0%
!!! TTTCTTTTTTTCTTTCTGAA+AGG - chr6_4:828496-828515 Msa0969330:intron 20.0%
!! TCAATTATTATGAAGTATGA+AGG - chr6_4:828539-828558 Msa0969330:intron 20.0%
!! CAATTATTATGAAGTATGAA+GGG - chr6_4:828540-828559 Msa0969330:intron 20.0%
!! AATTATTATGAAGTATGAAG+GGG - chr6_4:828541-828560 Msa0969330:intron 20.0%
!! AATTTAAGAGCTGATAAATT+TGG - chr6_4:828858-828877 Msa0969330:CDS 20.0%
!!! AAGAAGCATAAATGAAAAAT+AGG + chr6_4:828910-828929 None:intergenic 20.0%
!! AATGAATGATTTATGGAATA+TGG + chr6_4:829022-829041 None:intergenic 20.0%
!! TAACTGAAATGTTATGATTT+AGG + chr6_4:829181-829200 None:intergenic 20.0%
!!! TTTCATATTTCAGATTTGTT+TGG - chr6_4:829335-829354 Msa0969330:intron 20.0%
!! TGTTCTATCTCATATATTAA+AGG - chr6_4:829410-829429 Msa0969330:intron 20.0%
!!! CTTTATTTTACAACAAGTTT+TGG - chr6_4:829492-829511 Msa0969330:CDS 20.0%
!! TATAGATTTCTACTATAGAA+AGG - chr6_4:829648-829667 Msa0969330:intron 20.0%
!!! AAACAACAATTGTTGATTAA+AGG - chr6_4:830074-830093 Msa0969330:intron 20.0%
!! CAGATTAAATAAACTTATAG+GGG - chr6_4:830101-830120 Msa0969330:intron 20.0%
!! AAATAGCAAAAGTAACATTT+GGG + chr6_4:830380-830399 None:intergenic 20.0%
!! AAAATAGCAAAAGTAACATT+TGG + chr6_4:830381-830400 None:intergenic 20.0%
!!! TTACTTTTGCTATTTTTGTA+TGG - chr6_4:830385-830404 Msa0969330:CDS 20.0%
!! ATAAACTATTCATACTATTG+CGG - chr6_4:830416-830435 Msa0969330:intron 20.0%
!! ATACATAATGATAGTATGAA+TGG - chr6_4:830506-830525 Msa0969330:intron 20.0%
!! GATATAATAAGTCAGAAAAT+TGG - chr6_4:830955-830974 Msa0969330:intron 20.0%
!!! AATTATGGTTGGATTTTTAT+TGG - chr6_4:832504-832523 Msa0969330:intron 20.0%
!! GACAAAAAATTCGTGTTTTA+AGG + chr6_4:824205-824224 None:intergenic 25.0%
! GAATTGATGAAAATCGAAAT+TGG + chr6_4:824257-824276 None:intergenic 25.0%
!! ATGAAAATGGATTTAATGTC+TGG - chr6_4:824327-824346 Msa0969330:three_prime_UTR 25.0%
!! CAGTTATCAAAACTATTTTC+TGG + chr6_4:824952-824971 None:intergenic 25.0%
! AGAATTCTTCAAATGAAGAT+AGG - chr6_4:825150-825169 Msa0969330:intron 25.0%
!! GTCAATTTTTGTCAAACTTT+TGG - chr6_4:825196-825215 Msa0969330:intron 25.0%
!! ACAATTTGTTTGAGAGAAAA+GGG + chr6_4:825423-825442 None:intergenic 25.0%
!! AACAATTTGTTTGAGAGAAA+AGG + chr6_4:825424-825443 None:intergenic 25.0%
! CAGCAAAAAACAAAAATAGA+CGG + chr6_4:825586-825605 None:intergenic 25.0%
! AATACGACAATAGATGAAAA+AGG - chr6_4:825647-825666 Msa0969330:CDS 25.0%
! ATACGACAATAGATGAAAAA+GGG - chr6_4:825648-825667 Msa0969330:CDS 25.0%
! GATTATTAGATTCATAACTC+AGG - chr6_4:825719-825738 Msa0969330:CDS 25.0%
! TTGATACAGCCTTTAATATA+TGG - chr6_4:825763-825782 Msa0969330:CDS 25.0%
!!! GGCTTTTTTATTTACCAATT+TGG - chr6_4:825784-825803 Msa0969330:CDS 25.0%
! AAATCAGTATTCATCAAATC+TGG + chr6_4:826094-826113 None:intergenic 25.0%
! AATTCCATTACCAAAATCAT+GGG - chr6_4:826165-826184 Msa0969330:CDS 25.0%
!!! TTTCCTTTGTATATTTTGAC+AGG - chr6_4:826271-826290 Msa0969330:intron 25.0%
!! TATTAGTTTACTAGTTTCCT+AGG - chr6_4:826368-826387 Msa0969330:intron 25.0%
!! TATTAGTTTACTAGTTTCCT+AGG - chr6_4:826368-826387 Msa0969330:intron 25.0%
!!! TAACAATTTTAGGAATACCT+AGG + chr6_4:826434-826453 None:intergenic 25.0%
!! CAAGATGACATAACAATTTT+AGG + chr6_4:826444-826463 None:intergenic 25.0%
! CTAAAATTGTTATGTCATCT+TGG - chr6_4:826442-826461 Msa0969330:intron 25.0%
! CTTAAAACGGTTAAAAGTAA+TGG + chr6_4:826811-826830 None:intergenic 25.0%
!!! CATTACTTTTAACCGTTTTA+AGG - chr6_4:826809-826828 Msa0969330:intron 25.0%
! AATCAACAAGTAATTATGAC+TGG + chr6_4:827066-827085 None:intergenic 25.0%
! TAAGAAAAATAAGGTGAAGT+GGG + chr6_4:827222-827241 None:intergenic 25.0%
! TTAAGAAAAATAAGGTGAAG+TGG + chr6_4:827223-827242 None:intergenic 25.0%
! AGAAGATATTCAGTATCATA+AGG - chr6_4:827335-827354 Msa0969330:intron 25.0%
! GAAGATATTCAGTATCATAA+GGG - chr6_4:827336-827355 Msa0969330:intron 25.0%
! AGTTGAAATCAGTATTAATC+AGG + chr6_4:827567-827586 None:intergenic 25.0%
! TATCAATGAATCAAATCCTA+TGG + chr6_4:827619-827638 None:intergenic 25.0%
! ATAACAAGAGTTAGCTATAA+GGG + chr6_4:827735-827754 None:intergenic 25.0%
! TATAACAAGAGTTAGCTATA+AGG + chr6_4:827736-827755 None:intergenic 25.0%
! AACCATTAAATTGCTACTAA+AGG - chr6_4:827798-827817 Msa0969330:intron 25.0%
! ACCATTAAATTGCTACTAAA+GGG - chr6_4:827799-827818 Msa0969330:intron 25.0%
! TCACTTTGTCATTACTTAAA+AGG + chr6_4:828242-828261 None:intergenic 25.0%
!! TCATTGAATCCAATTTTCTT+TGG - chr6_4:828380-828399 Msa0969330:intron 25.0%
! CATATGAAACCAAAGAAAAT+TGG + chr6_4:828392-828411 None:intergenic 25.0%
! TATTCTGAGTATAGAATTCA+GGG + chr6_4:828700-828719 None:intergenic 25.0%
! TTATTCTGAGTATAGAATTC+AGG + chr6_4:828701-828720 None:intergenic 25.0%
!! CTATACTCAGAATAATTTTG+AGG - chr6_4:828706-828725 Msa0969330:intron 25.0%
!! TGTTTTCAAAAACTTTTGTG+AGG - chr6_4:828764-828783 Msa0969330:intron 25.0%
! TAGATAACGTTAATCAAGAA+AGG + chr6_4:828945-828964 None:intergenic 25.0%
! GAAACAAATAACGAAGTTAA+AGG + chr6_4:829222-829241 None:intergenic 25.0%
!! TTTGGAGTAAAAGCTTAAAT+TGG + chr6_4:829700-829719 None:intergenic 25.0%
! TTCAGATTGAGAAATTAGTT+AGG - chr6_4:829793-829812 Msa0969330:intron 25.0%
! GTTCTTATGAATTTACTTGA+AGG - chr6_4:830350-830369 Msa0969330:CDS 25.0%
! TAGTATGAATGGTAAGATTA+AGG - chr6_4:830517-830536 Msa0969330:CDS 25.0%
!!! AGCTATTATTTTGAAATTGC+TGG - chr6_4:830738-830757 Msa0969330:CDS 25.0%
! CTGACTTATTATATCAACAA+TGG + chr6_4:830950-830969 None:intergenic 25.0%
! AAATATTAGAGAACAGATTG+TGG - chr6_4:831206-831225 Msa0969330:intron 25.0%
! ACGTTGTTAATTATACAGTA+AGG + chr6_4:831440-831459 None:intergenic 25.0%
! AAGATTACAAAAAACATTCC+TGG - chr6_4:831584-831603 Msa0969330:intron 25.0%
! CTGTTTAATAATAGTACCTT+AGG - chr6_4:831689-831708 Msa0969330:intron 25.0%
!!! ACACACTTCTTATTTTTCTA+TGG + chr6_4:831768-831787 None:intergenic 25.0%
!! ATAGAAAAATAAGAAGTGTG+TGG - chr6_4:831767-831786 Msa0969330:intron 25.0%
!!! ATAAATTTGTTAAAGAGCAC+TGG + chr6_4:831804-831823 None:intergenic 25.0%
!! TTGATATGTGTTTGATTTAG+TGG - chr6_4:831843-831862 Msa0969330:intron 25.0%
!!! ATTTTTATTTTCATCGTCTC+AGG - chr6_4:831877-831896 Msa0969330:intron 25.0%
! ATTTGCGAGAAAGAAATTTA+AGG - chr6_4:832661-832680 Msa0969330:five_prime_UTR 25.0%
!!! CGATTTTGTTTTCTTCTTCA+AGG - chr6_4:824292-824311 Msa0969330:three_prime_UTR 30.0%
! AAATCCATTTTCATAGCTCA+CGG + chr6_4:824321-824340 None:intergenic 30.0%
!! ATCACTTTTAGAAAAAGGTG+TGG - chr6_4:824710-824729 Msa0969330:CDS 30.0%
TAATTGTAGATTCTGTAGTG+AGG - chr6_4:824769-824788 Msa0969330:CDS 30.0%
GTAATGCTTTGATCGAAATA+TGG - chr6_4:824795-824814 Msa0969330:CDS 30.0%
TGGTTTACAATTGAACATTC+TGG - chr6_4:824815-824834 Msa0969330:CDS 30.0%
! GATTAAGAACCCATTTGTTA+CGG + chr6_4:825086-825105 None:intergenic 30.0%
! TGTAGGTTTTCCTATAATGT+TGG - chr6_4:825497-825516 Msa0969330:intron 30.0%
! GTAGGTTTTCCTATAATGTT+GGG - chr6_4:825498-825517 Msa0969330:intron 30.0%
AGAACGTAATGATGTTGAAA+TGG - chr6_4:825533-825552 Msa0969330:CDS 30.0%
AATAGACGGTAAACATAACA+GGG + chr6_4:825572-825591 None:intergenic 30.0%
AAATAGACGGTAAACATAAC+AGG + chr6_4:825573-825592 None:intergenic 30.0%
!! CAGTAGGACTTGTTATATAA+TGG + chr6_4:825963-825982 None:intergenic 30.0%
CATTATATAACAAGTCCTAC+TGG - chr6_4:825961-825980 Msa0969330:CDS 30.0%
ATTGGAAATTATATCCTTGC+AGG - chr6_4:825991-826010 Msa0969330:CDS 30.0%
ACTCCTATTAATCATCCAAA+AGG - chr6_4:826049-826068 Msa0969330:CDS 30.0%
GAATTCCATTACCAAAATCA+TGG - chr6_4:826164-826183 Msa0969330:CDS 30.0%
CTTCCTGTCAAAATATACAA+AGG + chr6_4:826277-826296 None:intergenic 30.0%
!!! TTGTATATTTTGACAGGAAG+AGG - chr6_4:826277-826296 Msa0969330:intron 30.0%
AATTGTTATGTCATCTTGGT+TGG - chr6_4:826446-826465 Msa0969330:intron 30.0%
ACATTTCTGTTAGAGCAAAA+AGG + chr6_4:827194-827213 None:intergenic 30.0%
AAGAAAAATAAGGTGAAGTG+GGG + chr6_4:827221-827240 None:intergenic 30.0%
!!! TAATTCTTTGGTCACTTTTC+AGG - chr6_4:827457-827476 Msa0969330:CDS 30.0%
TCAAATTGTTCAGCAATTCA+AGG + chr6_4:827487-827506 None:intergenic 30.0%
!! ATACTGATTTCAACTATACG+TGG - chr6_4:827572-827591 Msa0969330:intron 30.0%
!!! ATATTGATTTTGAAGCTGAG+AGG - chr6_4:827636-827655 Msa0969330:intron 30.0%
! TCTTTTACTCAACAAAAGGT+TGG - chr6_4:827669-827688 Msa0969330:intron 30.0%
TCCCTTTAGTAGCAATTTAA+TGG + chr6_4:827803-827822 None:intergenic 30.0%
ATTAAATTGCTACTAAAGGG+AGG - chr6_4:827802-827821 Msa0969330:intron 30.0%
! GAACTTATACTTCTGTTTTG+TGG - chr6_4:827948-827967 Msa0969330:intron 30.0%
TTACAAATGACATCTAGACA+TGG - chr6_4:828185-828204 Msa0969330:CDS 30.0%
TATTCTTCTTGATAAATCGG+TGG - chr6_4:828327-828346 Msa0969330:intron 30.0%
TTGATGAACTTTCTCTCATT+AGG - chr6_4:828578-828597 Msa0969330:intron 30.0%
!! ATTAGGCATTGAGATGTATT+GGG - chr6_4:828595-828614 Msa0969330:intron 30.0%
!! GTTTTTGAAAACATCATCAG+CGG + chr6_4:828757-828776 None:intergenic 30.0%
! TTCAAAAACTTTTGTGAGGT+TGG - chr6_4:828768-828787 Msa0969330:intron 30.0%
CTAAATCAGAAAAATGCTGA+TGG - chr6_4:828962-828981 Msa0969330:intron 30.0%
TGATTTATGGAATATGGTTG+TGG + chr6_4:829016-829035 None:intergenic 30.0%
CTCATGGAATGAATGATTTA+TGG + chr6_4:829029-829048 None:intergenic 30.0%
CATAAATCATTCATTCCATG+AGG - chr6_4:829027-829046 Msa0969330:CDS 30.0%
! ATGTTCATATGTCTTTTGGA+AGG - chr6_4:829053-829072 Msa0969330:CDS 30.0%
!!! TTTTGGAAGGTTTGTTTTGT+TGG - chr6_4:829066-829085 Msa0969330:CDS 30.0%
!! TTTTGTTGGTTGTGCTTTAA+TGG - chr6_4:829080-829099 Msa0969330:CDS 30.0%
! TCAGATTTGTTTGGATTATC+TGG - chr6_4:829344-829363 Msa0969330:intron 30.0%
AAGCTAAAAATGCAATGAAG+CGG + chr6_4:829475-829494 None:intergenic 30.0%
!! GTTTTGGTAGATGTAATGTA+AGG - chr6_4:829508-829527 Msa0969330:CDS 30.0%
TTTCTGTGAAAGAAGCTAAT+AGG - chr6_4:829823-829842 Msa0969330:intron 30.0%
TCCATTCAACTACTAACAAA+GGG + chr6_4:829901-829920 None:intergenic 30.0%
TTCCATTCAACTACTAACAA+AGG + chr6_4:829902-829921 None:intergenic 30.0%
GTAAAACTTGCACTAACAAA+AGG + chr6_4:830242-830261 None:intergenic 30.0%
CTAGAGCAAAATAAACCAAT+AGG + chr6_4:830466-830485 None:intergenic 30.0%
TGAATGGTAAGATTAAGGAA+AGG - chr6_4:830522-830541 Msa0969330:CDS 30.0%
GAAAGGAAGAAGTGAAATTT+AGG - chr6_4:830539-830558 Msa0969330:CDS 30.0%
ATCTTTGGATTTCATTGAAG+AGG + chr6_4:830683-830702 None:intergenic 30.0%
TCTTCAATGAAATCCAAAGA+TGG - chr6_4:830682-830701 Msa0969330:intron 30.0%
TGTCAGAAACAGTTTGTATA+AGG - chr6_4:830851-830870 Msa0969330:intron 30.0%
GTCAGAAACAGTTTGTATAA+GGG - chr6_4:830852-830871 Msa0969330:intron 30.0%
TCAGAAACAGTTTGTATAAG+GGG - chr6_4:830853-830872 Msa0969330:intron 30.0%
TATAACAAATCCACAGATAG+CGG - chr6_4:830910-830929 Msa0969330:intron 30.0%
!!! AGTTTTGTTTTCGCTAATGT+GGG - chr6_4:831018-831037 Msa0969330:intron 30.0%
! TCCAATTCTCACTACAATTT+TGG - chr6_4:831146-831165 Msa0969330:intron 30.0%
TCCAAAATTGTAGTGAGAAT+TGG + chr6_4:831150-831169 None:intergenic 30.0%
! GTGATGGTGAATATATAAAG+CGG - chr6_4:831298-831317 Msa0969330:intron 30.0%
ACATGAAAGAAACAGATTCA+TGG + chr6_4:831411-831430 None:intergenic 30.0%
CTAAATACTCTGAATTTCGA+AGG + chr6_4:831487-831506 None:intergenic 30.0%
TGTTATTCGAAATGGTACAT+TGG - chr6_4:831904-831923 Msa0969330:intron 30.0%
ACTATGTATCAGAATTTAGC+TGG - chr6_4:832088-832107 Msa0969330:intron 30.0%
TGTACAGCTAACTCAAATTA+TGG - chr6_4:832489-832508 Msa0969330:intron 30.0%
! TGGATTTTTATTGGAGATGA+TGG - chr6_4:832513-832532 Msa0969330:intron 30.0%
!! TTTTTATTGGAGATGATGGT+TGG - chr6_4:832517-832536 Msa0969330:intron 30.0%
! GGTTCTATTTTGCAATATTC+AGG - chr6_4:832578-832597 Msa0969330:five_prime_UTR 30.0%
TTCTTTCTCGCAAATTTGAT+TGG + chr6_4:832656-832675 None:intergenic 30.0%
!! CTGTTGAATGTTTTTACATG+AGG - chr6_4:832698-832717 Msa0969330:five_prime_UTR 30.0%
TTAAGGTTCGAATCAGAAGA+AGG + chr6_4:824188-824207 None:intergenic 35.0%
GGATTTAATGTCTGGTTACA+AGG - chr6_4:824335-824354 Msa0969330:three_prime_UTR 35.0%
ACAGTGATCATGACTAGATT+AGG - chr6_4:824441-824460 Msa0969330:CDS 35.0%
CAGTGATCATGACTAGATTA+GGG - chr6_4:824442-824461 Msa0969330:CDS 35.0%
AAGGTGTGGAAAATAAGCTT+AGG - chr6_4:824724-824743 Msa0969330:CDS 35.0%
! TTTTCTCACCAAGTGAAAGT+CGG + chr6_4:824860-824879 None:intergenic 35.0%
!!! AAATTTTCACAGGGTGTTGT+TGG - chr6_4:825110-825129 Msa0969330:intron 35.0%
TTGCTTGATCGGATAAACAA+TGG - chr6_4:825299-825318 Msa0969330:intron 35.0%
ATAGCATTTCTTCTGTCATC+TGG + chr6_4:825332-825351 None:intergenic 35.0%
AAAGCTTTCCAGTTAGCATT+TGG - chr6_4:825383-825402 Msa0969330:intron 35.0%
AAGCTTTCCAGTTAGCATTT+GGG - chr6_4:825384-825403 Msa0969330:intron 35.0%
TATGTTTGATGCATCGTTGT+AGG - chr6_4:825480-825499 Msa0969330:intron 35.0%
! TTTAAGACGCCCAACATTAT+AGG + chr6_4:825510-825529 None:intergenic 35.0%
TATAATGTTGGGCGTCTTAA+AGG - chr6_4:825509-825528 Msa0969330:intron 35.0%
!!! TTGCTGTTTCTGTGTTTTCA+AGG - chr6_4:825600-825619 Msa0969330:CDS 35.0%
CCACAATACCAATTCCAAAT+TGG + chr6_4:825801-825820 None:intergenic 35.0%
! CCAATTTGGAATTGGTATTG+TGG - chr6_4:825798-825817 Msa0969330:CDS 35.0%
AATGGTACACATATAGGGAA+AGG + chr6_4:825945-825964 None:intergenic 35.0%
!! TTTCCAATTAACTTGCCAGT+AGG + chr6_4:825979-825998 None:intergenic 35.0%
! GGTCCTTTTGGATGATTAAT+AGG + chr6_4:826055-826074 None:intergenic 35.0%
! ACTTCATTACTTGGTCCTTT+TGG + chr6_4:826067-826086 None:intergenic 35.0%
TCTGGTTGAACTTCATTACT+TGG + chr6_4:826076-826095 None:intergenic 35.0%
CCAACAAACTTAGAAGAAGA+GGG + chr6_4:826141-826160 None:intergenic 35.0%
ACCAACAAACTTAGAAGAAG+AGG + chr6_4:826142-826161 None:intergenic 35.0%
!! ACATCCCATGATTTTGGTAA+TGG + chr6_4:826172-826191 None:intergenic 35.0%
! GAGAATACATCCCATGATTT+TGG + chr6_4:826178-826197 None:intergenic 35.0%
!!! TGAAAGTGTCCTGTACTTTT+AGG - chr6_4:826209-826228 Msa0969330:CDS 35.0%
TCGAGAATTTAGGAATACCT+AGG + chr6_4:826388-826407 None:intergenic 35.0%
TATTCCTAAATTCTCGACAG+AGG - chr6_4:826391-826410 Msa0969330:intron 35.0%
AATACCTCTGTCGAGAATTT+AGG + chr6_4:826398-826417 None:intergenic 35.0%
TTATGTCATCTTGGTTGGAA+AGG - chr6_4:826451-826470 Msa0969330:intron 35.0%
AGAAAAATAAGGTGAAGTGG+GGG + chr6_4:827220-827239 None:intergenic 35.0%
GATATTCAGTATCATAAGGG+AGG - chr6_4:827339-827358 Msa0969330:intron 35.0%
ATTTCAACTATACGTGGTTC+AGG - chr6_4:827578-827597 Msa0969330:intron 35.0%
TGAGTAGATTGATTGTCTAC+TGG + chr6_4:827768-827787 None:intergenic 35.0%
TGTTTATTAGCATCTTTCCC+AGG + chr6_4:827841-827860 None:intergenic 35.0%
ACAGAAAAATAAGACAGCTC+TGG - chr6_4:827858-827877 Msa0969330:CDS 35.0%
! TGATGATGATTGCATAGATG+AGG - chr6_4:827911-827930 Msa0969330:intron 35.0%
GTGGAATTGCATGTAGAAAA+AGG - chr6_4:827967-827986 Msa0969330:intron 35.0%
! TTGCATGTAGAAAAAGGTAC+TGG - chr6_4:827973-827992 Msa0969330:intron 35.0%
CTGGACAGTATGTTGATATT+AGG - chr6_4:827992-828011 Msa0969330:intron 35.0%
!! TATTAGGTGTTGAAAGCCAA+TGG - chr6_4:828008-828027 Msa0969330:intron 35.0%
!! ATTAGGTGTTGAAAGCCAAT+GGG - chr6_4:828009-828028 Msa0969330:intron 35.0%
!! CATTAGGCATTGAGATGTAT+TGG - chr6_4:828594-828613 Msa0969330:intron 35.0%
!! TTAGGCATTGAGATGTATTG+GGG - chr6_4:828596-828615 Msa0969330:intron 35.0%
TGTATTGGGGATTTAATTGC+TGG - chr6_4:828609-828628 Msa0969330:intron 35.0%
AAATCATTCATTCCATGAGG+AGG - chr6_4:829030-829049 Msa0969330:CDS 35.0%
! GAGGATGTTCATATGTCTTT+TGG - chr6_4:829049-829068 Msa0969330:CDS 35.0%
ACTTTCAGCATGCTATTACA+CGG - chr6_4:829242-829261 Msa0969330:CDS 35.0%
! TGAAAATGATGGTGATCTTG+AGG - chr6_4:829277-829296 Msa0969330:intron 35.0%
AGCTAAAAATGCAATGAAGC+GGG + chr6_4:829474-829493 None:intergenic 35.0%
! GTCTCGACTCTCTAATTTTA+AGG - chr6_4:829740-829759 Msa0969330:intron 35.0%
TCCCTTTGTTAGTAGTTGAA+TGG - chr6_4:829897-829916 Msa0969330:intron 35.0%
! GGAAATTTTGTGACACCATT+TGG - chr6_4:829918-829937 Msa0969330:intron 35.0%
! TTTTGCGTACTGTATCTTGT+TGG - chr6_4:829984-830003 Msa0969330:intron 35.0%
TTTGCGTACTGTATCTTGTT+GGG - chr6_4:829985-830004 Msa0969330:intron 35.0%
!!! GTCAATGCACTTATTTTTGC+TGG - chr6_4:830021-830040 Msa0969330:intron 35.0%
GCATCAATAAATACTCTCAC+CGG - chr6_4:830203-830222 Msa0969330:intron 35.0%
! GAGAAAGATGAAAAGCATGA+TGG + chr6_4:830290-830309 None:intergenic 35.0%
GCATCGAATGGTGAAATATT+TGG - chr6_4:830651-830670 Msa0969330:intron 35.0%
! TGGATTAGACTTTCCATCTT+TGG + chr6_4:830698-830717 None:intergenic 35.0%
AGATGGAAAGTCTAATCCAT+CGG - chr6_4:830699-830718 Msa0969330:intron 35.0%
!!! TTTTGAAATTGCTGGTTACC+TGG - chr6_4:830746-830765 Msa0969330:CDS 35.0%
TCAAGAAGATAAGTAAGGTG+TGG + chr6_4:830817-830836 None:intergenic 35.0%
CTAGCTCAAGAAGATAAGTA+AGG + chr6_4:830822-830841 None:intergenic 35.0%
ATAACAAATCCACAGATAGC+GGG - chr6_4:830911-830930 Msa0969330:intron 35.0%
!!! GAGTTTTGTTTTCGCTAATG+TGG - chr6_4:831017-831036 Msa0969330:intron 35.0%
!!! GTTTTGTTTTCGCTAATGTG+GGG - chr6_4:831019-831038 Msa0969330:intron 35.0%
! CGTGAATTTTGTGAAAAGAC+TGG - chr6_4:831179-831198 Msa0969330:intron 35.0%
! GAATTTTGTGAAAAGACTGG+AGG - chr6_4:831182-831201 Msa0969330:intron 35.0%
TATTAGAGAACAGATTGTGG+AGG - chr6_4:831209-831228 Msa0969330:intron 35.0%
TTATAGTCGTCCAAAAATCC+AGG - chr6_4:831233-831252 Msa0969330:intron 35.0%
! ACTACTGTTACCTGGATTTT+TGG + chr6_4:831246-831265 None:intergenic 35.0%
CGTATATATACTGAGAGGAA+TGG + chr6_4:831380-831399 None:intergenic 35.0%
TTCCTCTCAGTATATATACG+TGG - chr6_4:831380-831399 Msa0969330:intron 35.0%
ATCCACGTATATATACTGAG+AGG + chr6_4:831385-831404 None:intergenic 35.0%
!!! CAAGTTGGGTTTTTTTCTGA+TGG - chr6_4:831662-831681 Msa0969330:intron 35.0%
ATTCTTGCTGAACAAACCTA+AGG + chr6_4:831708-831727 None:intergenic 35.0%
!! CAGGATCTTGTTATTCGAAA+TGG - chr6_4:831896-831915 Msa0969330:intron 35.0%
!! ATCTCCAAGAAGCATCTAAA+AGG - chr6_4:832020-832039 Msa0969330:intron 35.0%
TAAAAGGTTGGAGATGCTTA+AGG - chr6_4:832036-832055 Msa0969330:intron 35.0%
ATTCTGATACATAGTTGCCT+CGG + chr6_4:832083-832102 None:intergenic 35.0%
TCAGAATTTAGCTGGAAAGA+TGG - chr6_4:832096-832115 Msa0969330:intron 35.0%
CAGCTAACTCAAATTATGGT+TGG - chr6_4:832493-832512 Msa0969330:intron 35.0%
GAATCCGTGAGCTATGAAAA+TGG - chr6_4:824314-824333 Msa0969330:three_prime_UTR 40.0%
GTGTGGAAAATAAGCTTAGG+TGG - chr6_4:824727-824746 Msa0969330:CDS 40.0%
! TCACTTGGTGAGAAAAGACT+TGG - chr6_4:824864-824883 Msa0969330:CDS 40.0%
!!! GGTGTTGTTGGACTTGTTTT+TGG - chr6_4:825122-825141 Msa0969330:intron 40.0%
ATGTTGAGCGTTTGCTTGAT+CGG - chr6_4:825288-825307 Msa0969330:intron 40.0%
AGCTTTCCAGTTAGCATTTG+GGG - chr6_4:825385-825404 Msa0969330:intron 40.0%
! TTGATAGAGAGTGTAGAACG+AGG + chr6_4:825918-825937 None:intergenic 40.0%
GTACACATATAGGGAAAGGA+TGG + chr6_4:825941-825960 None:intergenic 40.0%
AGTCCTACTGGCAAGTTAAT+TGG - chr6_4:825973-825992 Msa0969330:CDS 40.0%
ATTATATCCTTGCAGGTTCG+TGG - chr6_4:825998-826017 Msa0969330:CDS 40.0%
TGCACTAACAAGAGTTTCCA+AGG + chr6_4:826026-826045 None:intergenic 40.0%
CCCTCTTCTTCTAAGTTTGT+TGG - chr6_4:826138-826157 Msa0969330:CDS 40.0%
! ATGCACAAGCCTAAAAGTAC+AGG + chr6_4:826221-826240 None:intergenic 40.0%
CTGTCGAGAATTACTGAGAA+GGG + chr6_4:826345-826364 None:intergenic 40.0%
TCTGTCGAGAATTACTGAGA+AGG + chr6_4:826346-826365 None:intergenic 40.0%
TTCTCAGTAATTCTCGACAG+AGG - chr6_4:826345-826364 Msa0969330:intron 40.0%
! TGACTTCTTCTTCAGGTTAC+AGG - chr6_4:826482-826501 Msa0969330:intron 40.0%
GGAAATCTCTGTTGTCAAAG+CGG + chr6_4:827045-827064 None:intergenic 40.0%
ATGATCACTGTTTACCTTCC+AGG - chr6_4:827111-827130 Msa0969330:intron 40.0%
CTCATTTCTTATCACCTGGA+AGG + chr6_4:827128-827147 None:intergenic 40.0%
CTTCCAGGTGATAAGAAATG+AGG - chr6_4:827126-827145 Msa0969330:intron 40.0%
AAAAGGTTACCTCAGCTTCA+CGG + chr6_4:827177-827196 None:intergenic 40.0%
! CTTCAAAGACGACGATCTTT+TGG + chr6_4:827306-827325 None:intergenic 40.0%
CAAAAGATCGTCGTCTTTGA+AGG - chr6_4:827304-827323 Msa0969330:intron 40.0%
ATTCAGTATCATAAGGGAGG+AGG - chr6_4:827342-827361 Msa0969330:intron 40.0%
TTCAGTATCATAAGGGAGGA+GGG - chr6_4:827343-827362 Msa0969330:intron 40.0%
TCGTAGCAATGTATCCAATC+AGG - chr6_4:827508-827527 Msa0969330:intron 40.0%
ACAGAGTCAACAAACCTGAT+TGG + chr6_4:827525-827544 None:intergenic 40.0%
AGATTGATTGTCTACTGGCA+TGG + chr6_4:827763-827782 None:intergenic 40.0%
! AAATAAGACAGCTCTGGTTC+AGG - chr6_4:827864-827883 Msa0969330:CDS 40.0%
ATAGATGAGGAATCTGCTTC+TGG - chr6_4:827924-827943 Msa0969330:intron 40.0%
ACGTGTCTATACATTGTGAG+AGG + chr6_4:828071-828090 None:intergenic 40.0%
CTCACAATGTATAGACACGT+CGG - chr6_4:828071-828090 Msa0969330:intron 40.0%
AAGCTACTATCACTCATGCA+TGG + chr6_4:828268-828287 None:intergenic 40.0%
CTTGATAAATCGGTGGAACT+TGG - chr6_4:828334-828353 Msa0969330:intron 40.0%
CATAGAACAGAAACTGGGAA+AGG + chr6_4:828457-828476 None:intergenic 40.0%
CTTTCCCAGTTTCTGTTCTA+TGG - chr6_4:828455-828474 Msa0969330:intron 40.0%
GATGCCATAGAACAGAAACT+GGG + chr6_4:828462-828481 None:intergenic 40.0%
TGATGCCATAGAACAGAAAC+TGG + chr6_4:828463-828482 None:intergenic 40.0%
CTTCTTGCTAGCAAAGTTCT+TGG - chr6_4:828651-828670 Msa0969330:intron 40.0%
TATAGAATTCAGGGCAGGTT+CGG + chr6_4:828691-828710 None:intergenic 40.0%
ACATATGAACATCCTCCTCA+TGG + chr6_4:829045-829064 None:intergenic 40.0%
CTATTACACGGTCTTACGTT+GGG - chr6_4:829254-829273 Msa0969330:CDS 40.0%
CTTACGTTGGGTGAAAATGA+TGG - chr6_4:829266-829285 Msa0969330:intron 40.0%
AAAGGACAATCTCCAATGCA+AGG - chr6_4:829428-829447 Msa0969330:intron 40.0%
ACAATCTCCAATGCAAGGAA+AGG - chr6_4:829433-829452 Msa0969330:intron 40.0%
CAATCTCCAATGCAAGGAAA+GGG - chr6_4:829434-829453 Msa0969330:intron 40.0%
AACATACCCTTTCCTTGCAT+TGG + chr6_4:829443-829462 None:intergenic 40.0%
GCTAAAAATGCAATGAAGCG+GGG + chr6_4:829473-829492 None:intergenic 40.0%
GGGAGACACAATTTACCAAA+TGG + chr6_4:829936-829955 None:intergenic 40.0%
AACTTGCACTAACAAAAGGC+AGG + chr6_4:830238-830257 None:intergenic 40.0%
CCAATAGGTAAACACTGATG+TGG + chr6_4:830451-830470 None:intergenic 40.0%
CCACATCAGTGTTTACCTAT+TGG - chr6_4:830448-830467 Msa0969330:intron 40.0%
! GGTTTTGCGAATTGAAATCG+AGG - chr6_4:830591-830610 Msa0969330:intron 40.0%
AGAACCACTAATGCATCGAA+TGG - chr6_4:830639-830658 Msa0969330:intron 40.0%
TTCACCATTCGATGCATTAG+TGG + chr6_4:830646-830665 None:intergenic 40.0%
GGATTTCATTGAAGAGGTGA+GGG + chr6_4:830677-830696 None:intergenic 40.0%
TGGATTTCATTGAAGAGGTG+AGG + chr6_4:830678-830697 None:intergenic 40.0%
GATGGAAAGTCTAATCCATC+GGG - chr6_4:830700-830719 Msa0969330:intron 40.0%
! CTCTTCTGCTCTATTTCTTC+TGG + chr6_4:831270-831289 None:intergenic 40.0%
GAAGAAATAGAGCAGAAGAG+AGG - chr6_4:831270-831289 Msa0969330:intron 40.0%
CATCGTAGTTAACACTTTCC+AGG + chr6_4:831605-831624 None:intergenic 40.0%
!! TGTTGATTCGTTCAGCAAGT+TGG - chr6_4:831647-831666 Msa0969330:intron 40.0%
!! GTTGATTCGTTCAGCAAGTT+GGG - chr6_4:831648-831667 Msa0969330:intron 40.0%
ATGCTTCTTGGAGATCTCTA+CGG + chr6_4:832015-832034 None:intergenic 40.0%
! CCAACCTTTTAGATGCTTCT+TGG + chr6_4:832027-832046 None:intergenic 40.0%
!! CCAAGAAGCATCTAAAAGGT+TGG - chr6_4:832024-832043 Msa0969330:intron 40.0%
AAAGGCCAAAATTGAATCCG+AGG - chr6_4:832063-832082 Msa0969330:intron 40.0%
! AGTTGCCTCGGATTCAATTT+TGG + chr6_4:832071-832090 None:intergenic 40.0%
CTCAAGGCTATTGTATGCAT+CGG + chr6_4:832143-832162 None:intergenic 40.0%
GTTGGAGATTAGATTGCTCA+AGG + chr6_4:832159-832178 None:intergenic 40.0%
TGAGCAATCTAATCTCCAAC+TGG - chr6_4:832159-832178 Msa0969330:intron 40.0%
TAATCTCCAACTGGAGAATG+AGG - chr6_4:832168-832187 Msa0969330:intron 40.0%
AATGATCTGCTTGTATGCCT+CGG - chr6_4:832292-832311 Msa0969330:intron 40.0%
TAGACTTAGTGCTAGGTTGT+TGG - chr6_4:832336-832355 Msa0969330:intron 40.0%
GATGTTGACCAACTACTTGA+AGG - chr6_4:832370-832389 Msa0969330:intron 40.0%
! TTGATTGGCTAACACGACAA+AGG + chr6_4:832641-832660 None:intergenic 40.0%
CCAAGTGAAAGTCGGCTAAA+TGG + chr6_4:824852-824871 None:intergenic 45.0%
! CCATTTAGCCGACTTTCACT+TGG - chr6_4:824849-824868 Msa0969330:CDS 45.0%
! CAGTTAGCATTTGGGGCAAT+GGG - chr6_4:825392-825411 Msa0969330:intron 45.0%
! AGAGAGTGTAGAACGAGGAA+TGG + chr6_4:825913-825932 None:intergenic 45.0%
CCTGAAGAAGAAGTCAGTGA+GGG + chr6_4:826478-826497 None:intergenic 45.0%
ACCTGAAGAAGAAGTCAGTG+AGG + chr6_4:826479-826498 None:intergenic 45.0%
! ACTATATTGACTATCCCCCG+CGG - chr6_4:826507-826526 Msa0969330:intron 45.0%
! TCGGCTAATGGACATGCTTA+TGG - chr6_4:826536-826555 Msa0969330:intron 45.0%
TCCAGCTCTGTTGTCAATAG+CGG - chr6_4:826635-826654 Msa0969330:intron 45.0%
!!! TTTTTTCCGCTCCGCTATAG+CGG + chr6_4:826670-826689 None:intergenic 45.0%
ACACACACCATGCAGAAAGA+CGG - chr6_4:826779-826798 Msa0969330:intron 45.0%
AGGCCTCATTTCTTATCACC+TGG + chr6_4:827132-827151 None:intergenic 45.0%
CAGGTGAGTAAGAAGCAGTA+AGG + chr6_4:827152-827171 None:intergenic 45.0%
AAAGGTTACCTCAGCTTCAC+GGG + chr6_4:827176-827195 None:intergenic 45.0%
GTACTACTCAGAGAGACCAT+AGG - chr6_4:827600-827619 Msa0969330:CDS 45.0%
GTGGAACTTGGAGTCTACTT+GGG - chr6_4:828346-828365 Msa0969330:intron 45.0%
TGCTAGCAAAGTTCTTGGAG+AGG - chr6_4:828656-828675 Msa0969330:intron 45.0%
CTGAGTATAGAATTCAGGGC+AGG + chr6_4:828696-828715 None:intergenic 45.0%
GCTATTACACGGTCTTACGT+TGG - chr6_4:829253-829272 Msa0969330:CDS 45.0%
! TACCGACACAGGAAAAGCAT+GGG + chr6_4:829956-829975 None:intergenic 45.0%
!! CTTTTCCTGTGTCGGTAGTT+GGG - chr6_4:829959-829978 Msa0969330:intron 45.0%
GGGGAAGTAATACACTAGTG+AGG - chr6_4:830120-830139 Msa0969330:intron 45.0%
AAAAGGCAGGACTAGATCTC+CGG + chr6_4:830225-830244 None:intergenic 45.0%
AGGTAAACACTGATGTGGCA+TGG + chr6_4:830446-830465 None:intergenic 45.0%
GCAGCTCCTAATGATTGCAT+GGG + chr6_4:830619-830638 None:intergenic 45.0%
TGCAGCTCCTAATGATTGCA+TGG + chr6_4:830620-830639 None:intergenic 45.0%
TGAGCGTATGAATTTCCCGA+TGG + chr6_4:830718-830737 None:intergenic 45.0%
! GGTTTTGCAGCAGTTGTGTT+GGG - chr6_4:830874-830893 Msa0969330:intron 45.0%
!! GAAGCAACACTCTGAGATAC+AGG - chr6_4:831338-831357 Msa0969330:CDS 45.0%
! TAAGAAGTGTGTGGAACTGC+AGG - chr6_4:831776-831795 Msa0969330:intron 45.0%
AACTACTACCTGTCTTAGCC+AGG + chr6_4:831937-831956 None:intergenic 45.0%
CACTTACTCTTTGCTCAGAC+TGG + chr6_4:831961-831980 None:intergenic 45.0%
CAGTCTGAGCAAAGAGTAAG+TGG - chr6_4:831959-831978 Msa0969330:intron 45.0%
TCTGAGCAAAGAGTAAGTGG+AGG - chr6_4:831962-831981 Msa0969330:intron 45.0%
! CTCTACGGAGTGTCTCTATT+TGG + chr6_4:832000-832019 None:intergenic 45.0%
GGAGATGCTTAAGGCAGAAA+AGG - chr6_4:832045-832064 Msa0969330:intron 45.0%
CTTTCACCTCATTCTCCAGT+TGG + chr6_4:832177-832196 None:intergenic 45.0%
!! AGAATGAGGTGAAAGCACTG+AGG - chr6_4:832182-832201 Msa0969330:intron 45.0%
!! GAATGAGGTGAAAGCACTGA+GGG - chr6_4:832183-832202 Msa0969330:intron 45.0%
!! AATGAGGTGAAAGCACTGAG+GGG - chr6_4:832184-832203 Msa0969330:intron 45.0%
! CTTTTATTGCCTCCACATCC+GGG + chr6_4:832228-832247 None:intergenic 45.0%
! GCTTTTATTGCCTCCACATC+CGG + chr6_4:832229-832248 None:intergenic 45.0%
! AGCAAGAGAAGAAGCTCTGA+AGG - chr6_4:832252-832271 Msa0969330:intron 45.0%
ATGATCTGCTTGTATGCCTC+GGG - chr6_4:832293-832312 Msa0969330:intron 45.0%
AGGTGGATAGACTTAGTGCT+AGG - chr6_4:832329-832348 Msa0969330:intron 45.0%
TAGTGCTAGGTTGTTGGAGT+TGG - chr6_4:832342-832361 Msa0969330:intron 45.0%
AGTGCTAGGTTGTTGGAGTT+GGG - chr6_4:832343-832362 Msa0969330:intron 45.0%
! GACCAACTACTTGAAGGCAT+TGG - chr6_4:832376-832395 Msa0969330:intron 45.0%
CTCCAATGCCTTCAAGTAGT+TGG + chr6_4:832381-832400 None:intergenic 45.0%
CTTCAAGACACAGTTCTTGC+TGG - chr6_4:832557-832576 Msa0969330:five_prime_UTR 45.0%
CCATTGCCCCAAATGCTAAC+TGG + chr6_4:825394-825413 None:intergenic 50.0%
! CCAGTTAGCATTTGGGGCAA+TGG - chr6_4:825391-825410 Msa0969330:intron 50.0%
!! CCCTCACTGACTTCTTCTTC+AGG - chr6_4:826475-826494 Msa0969330:intron 50.0%
ATTAGCCGAGTTATACCGCG+GGG + chr6_4:826525-826544 None:intergenic 50.0%
CATTAGCCGAGTTATACCGC+GGG + chr6_4:826526-826545 None:intergenic 50.0%
CCATTAGCCGAGTTATACCG+CGG + chr6_4:826527-826546 None:intergenic 50.0%
GGACATGCTTATGGATCGTG+AGG - chr6_4:826545-826564 Msa0969330:intron 50.0%
! TTTTTCCGCTCCGCTATAGC+GGG + chr6_4:826669-826688 None:intergenic 50.0%
CTAGCCGCGATGGAAAAAAG+CGG - chr6_4:826704-826723 Msa0969330:intron 50.0%
AAAAAAGCGGCCCGCTATTC+AGG - chr6_4:826717-826736 Msa0969330:intron 50.0%
TCTGCATGGTGTGTGTGTAG+CGG + chr6_4:826775-826794 None:intergenic 50.0%
GGCAAAACCGTCTTTCTGCA+TGG + chr6_4:826789-826808 None:intergenic 50.0%
!!! GTGTAGCGGGTGCTATTTTG+TGG + chr6_4:826969-826988 None:intergenic 50.0%
! TCCTGCACCGCACCAATTTT+TGG - chr6_4:826996-827015 Msa0969330:intron 50.0%
! CCTGCACCGCACCAATTTTT+GGG - chr6_4:826997-827016 Msa0969330:intron 50.0%
! CTGCACCGCACCAATTTTTG+GGG - chr6_4:826998-827017 Msa0969330:intron 50.0%
AGGGAGGAGGGAAATTCAGA+TGG - chr6_4:827355-827374 Msa0969330:intron 50.0%
GAGGAGGGAAATTCAGATGG+TGG - chr6_4:827358-827377 Msa0969330:intron 50.0%
! AGATGGTGGTGTAGTTGTGC+AGG - chr6_4:827372-827391 Msa0969330:intron 50.0%
GCTACTAAAGGGAGGTTCTG+AGG - chr6_4:827810-827829 Msa0969330:CDS 50.0%
GAACTGCAACAGGTACCCAT+TGG + chr6_4:828027-828046 None:intergenic 50.0%
GGTGGAACTTGGAGTCTACT+TGG - chr6_4:828345-828364 Msa0969330:intron 50.0%
! CTCCCATGCTTTTCCTGTGT+CGG - chr6_4:829951-829970 Msa0969330:intron 50.0%
CTACCGACACAGGAAAAGCA+TGG + chr6_4:829957-829976 None:intergenic 50.0%
!! GCTTTTCCTGTGTCGGTAGT+TGG - chr6_4:829958-829977 Msa0969330:intron 50.0%
AAAAGCCCAACTACCGACAC+AGG + chr6_4:829967-829986 None:intergenic 50.0%
! GAGGCACCCATGCAATCATT+AGG - chr6_4:830610-830629 Msa0969330:intron 50.0%
AGGAAGCAGTGCACTGCATT+GGG + chr6_4:830784-830803 None:intergenic 50.0%
TAGGAAGCAGTGCACTGCAT+TGG + chr6_4:830785-830804 None:intergenic 50.0%
TAAGGTGTGGTCGAGCATCT+AGG + chr6_4:830804-830823 None:intergenic 50.0%
! GGGTTTTGCAGCAGTTGTGT+TGG - chr6_4:830873-830892 Msa0969330:intron 50.0%
TGCATCTTTCCCGCTATCTG+TGG + chr6_4:830923-830942 None:intergenic 50.0%
GAGATCTTCAGCAGCTAGCA+TGG - chr6_4:831068-831087 Msa0969330:intron 50.0%
CTTCTGGCACTACTGTTACC+TGG + chr6_4:831254-831273 None:intergenic 50.0%
CAGAAGAGAGGCGAAAGTGA+TGG - chr6_4:831282-831301 Msa0969330:intron 50.0%
TCGAAATGGTACATTGGCCG+AGG - chr6_4:831910-831929 Msa0969330:intron 50.0%
GCAAAGAGTAAGTGGAGGCA+TGG - chr6_4:831967-831986 Msa0969330:intron 50.0%
AGAAGGACCCTCAACATTCC+CGG - chr6_4:832207-832226 Msa0969330:intron 50.0%
TCCACATCCGGGAATGTTGA+GGG + chr6_4:832217-832236 None:intergenic 50.0%
!! GAAGCTCTGAAGGAGAGTGA+AGG - chr6_4:832262-832281 Msa0969330:intron 50.0%
TAGGTTGTTGGAGTTGGGAG+AGG - chr6_4:832348-832367 Msa0969330:intron 50.0%
!! GAAGGCATTGGAGATGATGC+TGG - chr6_4:832388-832407 Msa0969330:intron 50.0%
TGCTGAAGATGTCGAAGACG+AGG - chr6_4:832414-832433 Msa0969330:intron 50.0%
CTATCCCCCGCGGTATAACT+CGG - chr6_4:826517-826536 Msa0969330:intron 55.0%
TTAGCCGAGTTATACCGCGG+GGG + chr6_4:826524-826543 None:intergenic 55.0%
CCGCGGTATAACTCGGCTAA+TGG - chr6_4:826524-826543 Msa0969330:intron 55.0%
GCCGCTATTGACAACAGAGC+TGG + chr6_4:826639-826658 None:intergenic 55.0%
! TTTTCCATCGCGGCTAGGAG+CGG + chr6_4:826701-826720 None:intergenic 55.0%
!!! CGCTTTTTTCCATCGCGGCT+AGG + chr6_4:826706-826725 None:intergenic 55.0%
TGTGTGTGTAGCGGCTGCTT+TGG + chr6_4:826766-826785 None:intergenic 55.0%
AAATTGGTGCGGTGCAGGAG+CGG + chr6_4:826995-827014 None:intergenic 55.0%
CCCAAAAATTGGTGCGGTGC+AGG + chr6_4:827000-827019 None:intergenic 55.0%
!! CACCGCACCAATTTTTGGGG+TGG - chr6_4:827001-827020 Msa0969330:intron 55.0%
GGCCACCCCAAAAATTGGTG+CGG + chr6_4:827006-827025 None:intergenic 55.0%
TTACCTCAGCTTCACGGGTC+AGG + chr6_4:827171-827190 None:intergenic 55.0%
GTGGTGTAGTTGTGCAGGTG+AGG - chr6_4:827377-827396 Msa0969330:intron 55.0%
GTAGTTGTGCAGGTGAGGCA+TGG - chr6_4:827382-827401 Msa0969330:intron 55.0%
!! GAGGTTCTGAGGCTGATCCT+GGG - chr6_4:827821-827840 Msa0969330:CDS 55.0%
ACCTGTTGCAGTTCGCTGTG+CGG - chr6_4:828033-828052 Msa0969330:intron 55.0%
GCGTAGACGCTAGCATTGCT+TGG + chr6_4:828988-829007 None:intergenic 55.0%
ATTGGGGCAATCTGCTAGCC+AGG + chr6_4:830767-830786 None:intergenic 55.0%
GGAAGCAGTGCACTGCATTG+GGG + chr6_4:830783-830802 None:intergenic 55.0%
ACCTGTCTTAGCCAGGTCCT+CGG + chr6_4:831930-831949 None:intergenic 55.0%
!! GTGAAAGCACTGAGGGGAGA+AGG - chr6_4:832190-832209 Msa0969330:intron 55.0%
ACCCTCAACATTCCCGGATG+TGG - chr6_4:832213-832232 Msa0969330:intron 55.0%
CTCCACATCCGGGAATGTTG+AGG + chr6_4:832218-832237 None:intergenic 55.0%
CTCAACATTCCCGGATGTGG+AGG - chr6_4:832216-832235 Msa0969330:intron 55.0%
! CCTTGCTTTGTTCTTGCCCG+AGG + chr6_4:832312-832331 None:intergenic 55.0%
CCTCGGGCAAGAACAAAGCA+AGG - chr6_4:832309-832328 Msa0969330:intron 55.0%
CGGGCAAGAACAAAGCAAGG+TGG - chr6_4:832312-832331 Msa0969330:intron 55.0%
! CAAGGCACCACGAACCTGCA+AGG + chr6_4:826008-826027 None:intergenic 60.0%
CTTGCAGGTTCGTGGTGCCT+TGG - chr6_4:826006-826025 Msa0969330:CDS 60.0%
!!! CGGGCCGCTTTTTTCCATCG+CGG + chr6_4:826711-826730 None:intergenic 60.0%
!!! GCGGGTGCTATTTTGTGGCG+CGG + chr6_4:826964-826983 None:intergenic 60.0%
AATTGGTGCGGTGCAGGAGC+GGG + chr6_4:826994-827013 None:intergenic 60.0%
AGCGCGGCCACCCCAAAAAT+TGG + chr6_4:827011-827030 None:intergenic 60.0%
TCACCTGACCCGTGAAGCTG+AGG - chr6_4:827165-827184 Msa0969330:intron 60.0%
!! GGAGGTTCTGAGGCTGATCC+TGG - chr6_4:827820-827839 Msa0969330:CDS 60.0%
ACCGCACAGCGAACTGCAAC+AGG + chr6_4:828037-828056 None:intergenic 60.0%
AGTTCTTGGAGAGGAGCCGC+AGG - chr6_4:828665-828684 Msa0969330:intron 60.0%
TGGTACATTGGCCGAGGACC+TGG - chr6_4:831916-831935 Msa0969330:intron 60.0%
! TTCCGCTCCGCTATAGCGGG+CGG + chr6_4:826666-826685 None:intergenic 65.0%
CGGCCCGCTATTCAGGAGTG+CGG - chr6_4:826724-826743 Msa0969330:intron 65.0%
! GGCCCGCTATTCAGGAGTGC+GGG - chr6_4:826725-826744 Msa0969330:intron 65.0%
! GCCCGCTATTCAGGAGTGCG+GGG - chr6_4:826726-826745 Msa0969330:intron 65.0%
CCCCCGCACTCCTGAATAGC+GGG + chr6_4:826730-826749 None:intergenic 65.0%
! CCCGCTATTCAGGAGTGCGG+GGG - chr6_4:826727-826746 Msa0969330:intron 65.0%
CCCCCCGCACTCCTGAATAG+CGG + chr6_4:826731-826750 None:intergenic 65.0%
! CCGCTATTCAGGAGTGCGGG+GGG - chr6_4:826728-826747 Msa0969330:intron 65.0%
TGCAGGAGCGGGGTGTGTAG+CGG + chr6_4:826983-827002 None:intergenic 65.0%
ATTGGTGCGGTGCAGGAGCG+GGG + chr6_4:826993-827012 None:intergenic 65.0%
AGCGGAAATGCAGCGCAGCG+CGG + chr6_4:827027-827046 None:intergenic 65.0%
TTCAGGGCAGGTTCGGCCTG+CGG + chr6_4:828684-828703 None:intergenic 65.0%
GCCGAGGACCTGGCTAAGAC+AGG - chr6_4:831926-831945 Msa0969330:intron 65.0%
CCATCGCGGCTAGGAGCGGT+GGG + chr6_4:826697-826716 None:intergenic 70.0%
TCCATCGCGGCTAGGAGCGG+TGG + chr6_4:826698-826717 None:intergenic 70.0%
GCAGGAGCGGGGTGTGTAGC+GGG + chr6_4:826982-827001 None:intergenic 70.0%
GGCTGCGCCGCCCGCTATAG+CGG - chr6_4:826656-826675 Msa0969330:intron 75.0%
! CGCCGCCCGCTATAGCGGAG+CGG - chr6_4:826661-826680 Msa0969330:intron 75.0%
CCCACCGCTCCTAGCCGCGA+TGG - chr6_4:826694-826713 Msa0969330:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 824113 832766 824113 ID=Msa0969330;Name=Msa0969330
chr6_4 mRNA 824113 832766 824113 ID=Msa0969330-mRNA-1;Parent=Msa0969330;Name=Msa0969330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=214|0.83|0.89|0.94|0.88|0.94|19|319|910
chr6_4 exon 824113 824980 824113 ID=Msa0969330-mRNA-1:exon:426;Parent=Msa0969330-mRNA-1
chr6_4 exon 825520 826287 825520 ID=Msa0969330-mRNA-1:exon:425;Parent=Msa0969330-mRNA-1
chr6_4 exon 827424 827489 827424 ID=Msa0969330-mRNA-1:exon:424;Parent=Msa0969330-mRNA-1
chr6_4 exon 827581 827629 827581 ID=Msa0969330-mRNA-1:exon:423;Parent=Msa0969330-mRNA-1
chr6_4 exon 827805 827908 827805 ID=Msa0969330-mRNA-1:exon:422;Parent=Msa0969330-mRNA-1
chr6_4 exon 828094 828279 828094 ID=Msa0969330-mRNA-1:exon:421;Parent=Msa0969330-mRNA-1
chr6_4 exon 828825 828896 828825 ID=Msa0969330-mRNA-1:exon:420;Parent=Msa0969330-mRNA-1
chr6_4 exon 828994 829107 828994 ID=Msa0969330-mRNA-1:exon:419;Parent=Msa0969330-mRNA-1
chr6_4 exon 829193 829279 829193 ID=Msa0969330-mRNA-1:exon:418;Parent=Msa0969330-mRNA-1
chr6_4 exon 829350 829400 829350 ID=Msa0969330-mRNA-1:exon:417;Parent=Msa0969330-mRNA-1
chr6_4 exon 829486 829581 829486 ID=Msa0969330-mRNA-1:exon:416;Parent=Msa0969330-mRNA-1
chr6_4 exon 829693 829746 829693 ID=Msa0969330-mRNA-1:exon:415;Parent=Msa0969330-mRNA-1
chr6_4 exon 830313 830406 830313 ID=Msa0969330-mRNA-1:exon:414;Parent=Msa0969330-mRNA-1
chr6_4 exon 830513 830586 830513 ID=Msa0969330-mRNA-1:exon:413;Parent=Msa0969330-mRNA-1
chr6_4 exon 830720 830866 830720 ID=Msa0969330-mRNA-1:exon:412;Parent=Msa0969330-mRNA-1
chr6_4 exon 831325 831377 831325 ID=Msa0969330-mRNA-1:exon:411;Parent=Msa0969330-mRNA-1
chr6_4 exon 831466 831593 831466 ID=Msa0969330-mRNA-1:exon:410;Parent=Msa0969330-mRNA-1
chr6_4 exon 832450 832460 832450 ID=Msa0969330-mRNA-1:exon:409;Parent=Msa0969330-mRNA-1
chr6_4 exon 832523 832766 832523 ID=Msa0969330-mRNA-1:exon:408;Parent=Msa0969330-mRNA-1
chr6_4 five_prime_UTR 832553 832766 832553 ID=Msa0969330-mRNA-1:five_prime_utr;Parent=Msa0969330-mRNA-1
chr6_4 CDS 832523 832552 832523 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 832450 832460 832450 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 831466 831593 831466 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 831325 831377 831325 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 830720 830866 830720 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 830513 830586 830513 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 830313 830406 830313 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 829693 829746 829693 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 829486 829581 829486 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 829350 829400 829350 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 829193 829279 829193 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 828994 829107 828994 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 828825 828896 828825 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 828094 828279 828094 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 827805 827908 827805 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 827581 827629 827581 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 827424 827489 827424 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 825520 826287 825520 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 CDS 824432 824980 824432 ID=Msa0969330-mRNA-1:cds;Parent=Msa0969330-mRNA-1
chr6_4 three_prime_UTR 824113 824431 824113 ID=Msa0969330-mRNA-1:three_prime_utr;Parent=Msa0969330-mRNA-1
Gene Sequence

>Msa0969330

ATGAAAATGGATTTAATGTCTGGTTACAAGTGCATTATATTGTATGTTGAGCGTTTGCTTGATCGGATAAACAATGGTAAACTACCAGATGACAGAAGAAATGCTATTACTGAGCTTCAAGCTGTTGTTTCAGAAAATAAAGCTTTCCAGTTAGCATTTGGGGCAATGGGTTTTCCTATAATGTTGGGCGTCTTAAAGGAAGAACGTAATGATGTTGAAATGGTTCGTGGTGCCTTGGAAACTCTTGTTAGTGCATTGACTCCTATTAATCATCCAAAAGGACCAAGTAATGAAGTTCAACCAGATTTGATGAATACTGATTTACTTTCTAGAGAAGAAGAAAGTATCCCTCTTCTTCTAAGTTTGTTGGAAGAGGATGATTTTTATGTTCGATATTATACTCTGCAAATATTGACTGCCCTTCTCAGTAATTCTCGACAGAGGACCCTCACTGACTTCTTCTTCAGGTTACAGGAAACTATATTGACTATCCCCCGCGGTATAACTCGGCTAATGGACATGCTTATGGATCGTGAGGTGATAAGAAATGAGGCCTTACTGCTTCTTACTCACCTGACCCGTGAAGCTGAGGAGATCCAAAAGATCGTCGTCTTTGAAGGTGCATATGAGAAGATATTCAGTATCATAAGGGAGGAGGGAAATTCAGATGGTGGTGTAGTTGTGCAGGACTGCCTTGAATTGCTGAACAATTTGATTCGTAGCAATGTATCCAATCAGGTACTACTCAGAGAGACCATAGGATTTGATTCATTGATATTGATTTTGAAGCTGAGAGGAAGTTCTTATTCTTTTACTCAACAAAAGACAATCAATCTACTCAGTGCATTAGAAACCATTAAATTGCTACTAAAGGGAGGTTCTGAGGCTGATCCTGGGAAAGATGCTAATAAACAGAAAAATAAGACAGCTCTGGTTCAGAAAAAGGTACTGGACAGTATGTTGATATTAGGTGTTGAAAGCCAATGGGTACCTGTTGCAGTTCGCTGTGCGGCATTGAGATGTATTGGGGATTTAATTGCTGGAGATTCAAAGAATCTCGATCTTCTTGCTAGCAAAGTTCTTGGAGAGGAGCCGCAGGCCGAACCTGCCCTGAATTCTATACTCAGAATAATTTTGAGGTCTTCTAGCATGCAAGAGTTCATTGCCGCTGATGATGTTTTCAAAAACTTTTGTGAGAAAAATGCTGATGGCCAAGCAATGCTAGCGTCTACGCTAATTCCACAACCATATTCCATAAATCATTCATTCCATGAGGAGGATGTTCATATGTCTTTTGGAAGCATGCTATTACACGGTCTTACGTTGGGTGAAAATGATGGTGATCTTGAGACTTGTAGCAGAGCTGCTAGTGTTCTATCTCATATATTAAAGGACAATCTCCAATGCAAGGAAAGGGTTTTGCGAATTGAAATCGAGGCACCCATGCAATCATTAGGAGCTGCAGAACCACTAATGCATCGAATGGTGAAATATTTGGCCCTCACCTCTTCAATGAAATCCAAAGATGGAAAGTCTAATCCATCGGGAAATTCATACGCTCAAGCTATTATTTTGAAATTGCTGGTTACCTGGCTAGCAGATTGCCCCAATGCAGTGCACTGCTTCCTAGATGCTCGACCACACCTTACTTATCTTCTTGAGCTAGTATCAAATCTGTCAGAAACAGTTTGTATAAGGGGTTTTGCAGCAGTTGTGTTGGGTGAATGTGTGATCTATAACAAATCCACAGATAGCGGGAAAGATGCATTTGCCATTGTTGATATAATAAGTCAGAAAATTGGGCTTAGTTCGTACTTCTTAAAATTTGATGAGATGCACAAGAGTTTTGTTTTCGCTAATGTGGGGTCATCATTCACACATAGATCGTTCTCGAGATCTTCAGCAGCTAGCATGGCAGATATTCAAGATGTAGATGAGAATGATTTGTCAGAAAAGAAAAATACAGATGATCCAATTCTCACTACAATTTTGGATTCTTACTTCGTGAATTTTGTGAAAAGACTGGAGGCAAATATTAGAGAACAGATTGTGGAGGTTTATAGTCGTCCAAAAATCCAGGTAACAGTAGTGCCAGAAGAAATAGAGCAGAAGAGAGGCGAAAGTGATGGTGAATATATAAAGCGGCTGAAAGCTTTCGTTGAGAAGCAACACTCTGAGATACAGGATCTTGTTATTCGAAATGGTACATTGGCCGAGGACCTGGCTAAGACAGGTAGTAGTTTCCAGTCTGAGCAAAGAGTAAGTGGAGGCATGGACAGAGTCCAAATAGAGACACTCCGTAGAGATCTCCAAGAAGCATCTAAAAGGTTGGAGATGCTTAAGGCAGAAAAGGCCAAAATTGAATCCGAGGCAACTATGTATCAGAATTTAGCTGGAAAGATGGAATCTGATCTACAGAGTCTGTCCGATGCATACAATAGCCTTGAGCAATCTAATCTCCAACTGGAGAATGAGGTGAAAGCACTGAGGGGAGAAGGACCCTCAACATTCCCGGATGTGGAGGCAATAAAAGCTGAAGCAAGAGAAGAAGCTCTGAAGGAGAGTGAAGGTGAACTGAATGATCTGCTTGTATGCCTCGGGCAAGAACAAAGCAAGGTGGATAGACTTAGTGCTAGGTTGTTGGAGTTGGGAGAGGATGTTGACCAACTACTTGAAGGCATTGGAGATGATGCTGGAGCTGCTGAAGATGTCGAAGACGAGGATGACGAGTAA

Protein sequence

>Msa0969330

MKMDLMSGYKCIILYVERLLDRINNGKLPDDRRNAITELQAVVSENKAFQLAFGAMGFPIMLGVLKEERNDVEMVRGALETLVSALTPINHPKGPSNEVQPDLMNTDLLSREEESIPLLLSLLEEDDFYVRYYTLQILTALLSNSRQRTLTDFFFRLQETILTIPRGITRLMDMLMDREVIRNEALLLLTHLTREAEEIQKIVVFEGAYEKIFSIIREEGNSDGGVVVQDCLELLNNLIRSNVSNQVLLRETIGFDSLILILKLRGSSYSFTQQKTINLLSALETIKLLLKGGSEADPGKDANKQKNKTALVQKKVLDSMLILGVESQWVPVAVRCAALRCIGDLIAGDSKNLDLLASKVLGEEPQAEPALNSILRIILRSSSMQEFIAADDVFKNFCEKNADGQAMLASTLIPQPYSINHSFHEEDVHMSFGSMLLHGLTLGENDGDLETCSRAASVLSHILKDNLQCKERVLRIEIEAPMQSLGAAEPLMHRMVKYLALTSSMKSKDGKSNPSGNSYAQAIILKLLVTWLADCPNAVHCFLDARPHLTYLLELVSNLSETVCIRGFAAVVLGECVIYNKSTDSGKDAFAIVDIISQKIGLSSYFLKFDEMHKSFVFANVGSSFTHRSFSRSSAASMADIQDVDENDLSEKKNTDDPILTTILDSYFVNFVKRLEANIREQIVEVYSRPKIQVTVVPEEIEQKRGESDGEYIKRLKAFVEKQHSEIQDLVIRNGTLAEDLAKTGSSFQSEQRVSGGMDRVQIETLRRDLQEASKRLEMLKAEKAKIESEATMYQNLAGKMESDLQSLSDAYNSLEQSNLQLENEVKALRGEGPSTFPDVEAIKAEAREEALKESEGELNDLLVCLGQEQSKVDRLSARLLELGEDVDQLLEGIGDDAGAAEDVEDEDDE*