AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437770 MtrunA17_Chr8g0382261 94.429 359 17 2 1 359 1 356 0.0 661
Msa1437770 MtrunA17_Chr3g0124001 58.182 385 122 11 1 359 1 372 5.60e-139 399
Msa1437770 MtrunA17_Chr1g0186161 56.395 172 75 0 166 337 137 308 1.19e-62 202
Msa1437770 MtrunA17_Chr1g0168381 61.017 59 23 0 275 333 12 70 7.86e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437770 AT4G39870.2 48.762 404 151 8 1 359 1 393 6.62e-119 350
Msa1437770 AT4G39870.1 48.762 404 151 8 1 359 1 393 6.62e-119 350
Msa1437770 AT2G05590.2 55.000 180 81 0 163 342 122 301 5.47e-69 219
Msa1437770 AT2G05590.1 54.930 142 64 0 163 304 122 263 1.31e-52 175
Msa1437770 AT5G06260.2 28.931 159 100 5 196 344 173 328 8.05e-14 72.4
Msa1437770 AT5G06260.1 28.931 159 100 5 196 344 237 392 8.16e-14 72.8
Msa1437770 AT5G06260.3 28.931 159 100 5 196 344 148 303 1.15e-13 71.6

Find 119 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGCGTTGCATACTTAA+AGG 0.172299 tig0028361:-21014 Msa1437770:three_prime_UTR
ACTTCCTTCACTTGAAATTC+TGG 0.230950 tig0028361:+21545 None:intergenic
GGTTTGTTATGGTCAGAAAT+AGG 0.233665 tig0028361:+24637 None:intergenic
GGTAGATGATGATGAGTTAA+AGG 0.279770 tig0028361:-24483 Msa1437770:CDS
TAGATTATGAATTATGATAA+AGG 0.297309 tig0028361:-24842 Msa1437770:five_prime_UTR
AGTTCGGTTTCCGAAACTTA+TGG 0.320071 tig0028361:-21590 Msa1437770:CDS
TATCACTTTCAACTCTTTAC+CGG 0.326685 tig0028361:-23874 Msa1437770:CDS
GCACTTCCGGCTTTAATTCA+TGG 0.329830 tig0028361:-24047 Msa1437770:CDS
ACATGCTTGTAAATATTTGC+AGG 0.331389 tig0028361:-21110 Msa1437770:three_prime_UTR
CAACCAATTTCTCATTCATT+TGG 0.340463 tig0028361:+24321 None:intergenic
TCAAGAAGGGATTGTTATCT+AGG 0.341466 tig0028361:-24298 Msa1437770:CDS
GTTTGTTATGGTCAGAAATA+GGG 0.345242 tig0028361:+24638 None:intergenic
TGCGGTTTATGATGCACTTC+CGG 0.349970 tig0028361:-24060 Msa1437770:CDS
TTGGCCTGGACCTAGTTTGC+TGG 0.351025 tig0028361:-23840 Msa1437770:intron
TGATCATTTGCCGGAAATAT+CGG 0.357645 tig0028361:-24117 Msa1437770:CDS
CAAAGCAGTTCACCTTGTTT+CGG 0.358183 tig0028361:-24683 Msa1437770:CDS
ACAAGGATTGCCATAAGTTT+CGG 0.368495 tig0028361:+21580 None:intergenic
TGACCAAATGAATGAGAAAT+TGG 0.373689 tig0028361:-24324 Msa1437770:CDS
CTTTAATTCATGGGAAGAAA+TGG 0.380374 tig0028361:-24037 Msa1437770:CDS
CATATCAACTCAAGATTGAA+TGG 0.382180 tig0028361:-21617 Msa1437770:intron
AGATTATGAATTATGATAAA+GGG 0.382482 tig0028361:-24841 Msa1437770:five_prime_UTR
AGGAGCAGTGTTTGGTGGCT+TGG 0.413328 tig0028361:-23006 Msa1437770:CDS
AGAGGTTCCTAGTGTGCCTT+TGG 0.414757 tig0028361:-24144 Msa1437770:CDS
TAATGACGGTGAGGGAATAT+AGG 0.417137 tig0028361:-24814 Msa1437770:five_prime_UTR
ATCGAAGGTTCCGATATTTC+CGG 0.423961 tig0028361:+24107 None:intergenic
AAGTTTCGTGCCTCAACAAC+CGG 0.428754 tig0028361:-24934 Msa1437770:five_prime_UTR
TTTGGTTGTTGATCATTTGC+CGG 0.432855 tig0028361:-24126 Msa1437770:CDS
GACCGAAAAGGAGCAGTGTT+TGG 0.438263 tig0028361:-23014 Msa1437770:CDS
CTTTGCAGCACATGGAAACA+TGG 0.442796 tig0028361:-23899 Msa1437770:intron
TGTTGATTTCAAATAGTTTG+AGG 0.444790 tig0028361:-24085 Msa1437770:CDS
GCAGTAAACGACGACGTATC+AGG 0.445057 tig0028361:+24437 None:intergenic
ACCACTGACTTTCTAGCGAT+TGG 0.446127 tig0028361:-21783 Msa1437770:CDS
TTCTCTTGTTGGATGGTCGA+AGG 0.447351 tig0028361:+22973 None:intergenic
AAGATTGAATGGGTCAAGTT+CGG 0.451165 tig0028361:-21606 Msa1437770:CDS
TGAGAAATTGGTTGTCAAGA+AGG 0.453693 tig0028361:-24312 Msa1437770:CDS
TTTACCGGAGAAGTATGCTT+TGG 0.460274 tig0028361:-23859 Msa1437770:CDS
CAGGTTGTTGGAGACCGAAA+AGG 0.462680 tig0028361:-23026 Msa1437770:CDS
TTGCATGTTCAGTGTCAAAC+TGG 0.464030 tig0028361:+25049 None:intergenic
CTGAGTCATCATCGGTCACT+CGG 0.465381 tig0028361:+24993 None:intergenic
AATTATTGTTTAGGAAGAAA+AGG 0.466326 tig0028361:-24504 Msa1437770:intron
TGAAATTGTACCAGCAAACT+AGG 0.469728 tig0028361:+23830 None:intergenic
CGGAGAAGTATGCTTTGGCC+TGG 0.471135 tig0028361:-23854 Msa1437770:CDS
GATAAGATTGTGACTGCAGC+TGG 0.474335 tig0028361:-24356 Msa1437770:CDS
AGAAATGGTTAATGATGTAC+AGG 0.474691 tig0028361:-24022 Msa1437770:intron
AGTTCATACCCATTACAAAA+TGG 0.475573 tig0028361:-21069 Msa1437770:three_prime_UTR
CACTTCCGGCTTTAATTCAT+GGG 0.478819 tig0028361:-24046 Msa1437770:CDS
CCTGTCGTATATCGCCCAAC+AGG 0.479602 tig0028361:-22799 Msa1437770:intron
CAAGAAGGGATTGTTATCTA+GGG 0.481467 tig0028361:-24297 Msa1437770:CDS
TCTCTTGTTGGATGGTCGAA+GGG 0.489291 tig0028361:+22974 None:intergenic
ACTGACTTTCTAGCGATTGG+TGG 0.489834 tig0028361:-21780 Msa1437770:CDS
TATTTATCTATCTGCTAGAA+CGG 0.490298 tig0028361:-24255 Msa1437770:CDS
TCCCTTTCACGATCTTGTGT+TGG 0.491614 tig0028361:+24224 None:intergenic
GAGAAATTGGTTGTCAAGAA+GGG 0.491672 tig0028361:-24311 Msa1437770:CDS
ATTTATCTATCTGCTAGAAC+GGG 0.494505 tig0028361:-24254 Msa1437770:CDS
GACTTTCTAGCGATTGGTGG+GGG 0.501174 tig0028361:-21777 Msa1437770:CDS
GAGGACGAGAGGGTTTGTTA+TGG 0.508533 tig0028361:+24626 None:intergenic
TTCTCCAGAATTTCAAGTGA+AGG 0.510211 tig0028361:-21549 Msa1437770:CDS
GGGATAGATTTGAGTCTGAT+GGG 0.512274 tig0028361:-24205 Msa1437770:CDS
TTGAGCAAAACAGAGGCACC+TGG 0.517709 tig0028361:-21314 Msa1437770:CDS
AGGGATAGATTTGAGTCTGA+TGG 0.519127 tig0028361:-24206 Msa1437770:CDS
CTTTCCTCCATGCAGTTGTG+GGG 0.519234 tig0028361:-21374 Msa1437770:intron
TTCCAACACAAGATCGTGAA+AGG 0.521427 tig0028361:-24226 Msa1437770:CDS
AGGCACCTGGGATCTCTCGC+TGG 0.521785 tig0028361:-21301 Msa1437770:CDS
AATTGCAATTTCTGCTAGCA+AGG 0.522215 tig0028361:-21198 Msa1437770:three_prime_UTR
TTCTTCCCATGAATTAAAGC+CGG 0.528712 tig0028361:+24041 None:intergenic
CTGACTTTCTAGCGATTGGT+GGG 0.531876 tig0028361:-21779 Msa1437770:CDS
ATTGTGACTGCAGCTGGAGC+TGG 0.535852 tig0028361:-24350 Msa1437770:CDS
TGATAAAGGGATTGTAATGA+CGG 0.536835 tig0028361:-24828 Msa1437770:five_prime_UTR
CGAAAAGGAGCAGTGTTTGG+TGG 0.540629 tig0028361:-23011 Msa1437770:CDS
GATGTTGATGATTATGCTGC+CGG 0.544764 tig0028361:+24897 None:intergenic
ACCGGAAAACGCTTCTACAC+CGG 0.545063 tig0028361:-24916 Msa1437770:five_prime_UTR
ATATTTACAAGCATGTTACA+TGG 0.546363 tig0028361:+21117 None:intergenic
AATTGAGAACTTACTATGGA+AGG 0.547869 tig0028361:+24604 None:intergenic
ATATCAACTCAAGATTGAAT+GGG 0.549497 tig0028361:-21616 Msa1437770:intron
AGATTTGAGTCTGATGGGTG+TGG 0.549958 tig0028361:-24200 Msa1437770:CDS
TGTATTTCCTTCAAAACATG+AGG 0.552112 tig0028361:-21348 Msa1437770:CDS
TTCAAATAGTTTGAGGAATG+CGG 0.552777 tig0028361:-24078 Msa1437770:CDS
CAGGCCAAAGCATACTTCTC+CGG 0.555164 tig0028361:+23855 None:intergenic
TCAACAACCAAAGGCACACT+AGG 0.555535 tig0028361:+24137 None:intergenic
GAAAGTGAATCAGAGATTGA+AGG 0.560111 tig0028361:-24461 Msa1437770:CDS
CTCTTGTTGGATGGTCGAAG+GGG 0.562431 tig0028361:+22975 None:intergenic
TGAGTCTGATGGGTGTGGTG+TGG 0.567048 tig0028361:-24195 Msa1437770:CDS
CATGTTACATGGTGATAACA+TGG 0.568306 tig0028361:+21128 None:intergenic
TGTACCAGCAAACTAGGTCC+AGG 0.570453 tig0028361:+23836 None:intergenic
CATGCTTGTAAATATTTGCA+GGG 0.571962 tig0028361:-21109 Msa1437770:three_prime_UTR
GCATACTTAAAGGAAAATGA+AGG 0.574641 tig0028361:-21004 Msa1437770:three_prime_UTR
TTTGCAGCACATGGAAACAT+GGG 0.579278 tig0028361:-23898 Msa1437770:intron
ATTTCAAGTGAAGGAAGTAG+AGG 0.579766 tig0028361:-21540 Msa1437770:intron
TCCAACACAAGATCGTGAAA+GGG 0.580137 tig0028361:-24225 Msa1437770:CDS
TATCTATCTGCTAGAACGGG+TGG 0.584754 tig0028361:-24251 Msa1437770:CDS
AGGGATTGTAATGACGGTGA+GGG 0.585410 tig0028361:-24822 Msa1437770:five_prime_UTR
CTATTTGAAATCAACATCGA+AGG 0.595593 tig0028361:+24092 None:intergenic
ATCCAACAAGAGAAAATACC+AGG 0.596747 tig0028361:-22964 Msa1437770:intron
AAGGGATTGTAATGACGGTG+AGG 0.597285 tig0028361:-24823 Msa1437770:five_prime_UTR
CAGTGGTGAGATCCGAAACA+AGG 0.598925 tig0028361:+24671 None:intergenic
TGGTGCAAAGTGTGAAGTAA+CGG 0.599281 tig0028361:+21802 None:intergenic
ATTTACCAGCGAGAGATCCC+AGG 0.600370 tig0028361:+21296 None:intergenic
TGACTTTCTAGCGATTGGTG+GGG 0.600382 tig0028361:-21778 Msa1437770:CDS
ATTGCAATTTCTGCTAGCAA+GGG 0.601315 tig0028361:-21197 Msa1437770:three_prime_UTR
TGACACTGAACATGCAAACA+AGG 0.602248 tig0028361:-25043 Msa1437770:five_prime_UTR
CCTGTTGGGCGATATACGAC+AGG 0.602267 tig0028361:+22799 None:intergenic
GGCAAATGATCAACAACCAA+AGG 0.615389 tig0028361:+24128 None:intergenic
AAATGAGTCACAAAATGATG+TGG 0.619732 tig0028361:+20977 None:intergenic
TGAGCAAAACAGAGGCACCT+GGG 0.621947 tig0028361:-21313 Msa1437770:CDS
TCAGTAAAATGCGAACTGCA+AGG 0.623392 tig0028361:+21243 None:intergenic
TCTGGAGAATGTGCTAAACA+AGG 0.634055 tig0028361:+21563 None:intergenic
ACTATGGAAGGAGGACGAGA+GGG 0.634975 tig0028361:+24616 None:intergenic
TACTATGGAAGGAGGACGAG+AGG 0.638442 tig0028361:+24615 None:intergenic
ACTAAAATTGAGCAAAACAG+AGG 0.638548 tig0028361:-21321 Msa1437770:CDS
ACCAATCGCTAGAAAGTCAG+TGG 0.645879 tig0028361:+21782 None:intergenic
AAGAAGGGATTGTTATCTAG+GGG 0.664052 tig0028361:-24296 Msa1437770:CDS
TGAGAACTTACTATGGAAGG+AGG 0.668946 tig0028361:+24607 None:intergenic
CTAGGAACCTCTTTCAACGG+CGG 0.671472 tig0028361:+24155 None:intergenic
ACACTAGGAACCTCTTTCAA+CGG 0.680780 tig0028361:+24152 None:intergenic
AATAGGGTTGAGAAGAACAG+TGG 0.691115 tig0028361:+24654 None:intergenic
TTACATGGTGATAACATGGG+TGG 0.696576 tig0028361:+21132 None:intergenic
AGTCATCATCGGTCACTCGG+CGG 0.705390 tig0028361:+24996 None:intergenic
ATGTTACATGGTGATAACAT+GGG 0.733161 tig0028361:+21129 None:intergenic
ATTATCTCTAGAATCCGACG+AGG 0.791211 tig0028361:+24391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAAAAATAATTAAA+CGG - tig0028361:21194-21213 Msa1437770:three_prime_UTR 0.0%
!! TGTATATTAAATTATTGTTT+AGG - tig0028361:21465-21484 Msa1437770:intron 10.0%
!!! TTTTAATTTTAAATGAAGTA+TGG - tig0028361:23859-23878 Msa1437770:CDS 10.0%
!!! ATTTTGTTTAGAATAAAAAT+TGG - tig0028361:24935-24954 Msa1437770:five_prime_UTR 10.0%
!! TAGATTATGAATTATGATAA+AGG - tig0028361:21136-21155 Msa1437770:three_prime_UTR 15.0%
!! AGATTATGAATTATGATAAA+GGG - tig0028361:21137-21156 Msa1437770:three_prime_UTR 15.0%
!! ATTAAAAAATAATTAAACGG+TGG - tig0028361:21197-21216 Msa1437770:three_prime_UTR 15.0%
!!! TTTTTTCTATTCCTATTTTT+AGG + tig0028361:21246-21265 None:intergenic 15.0%
!! ACTGTAATTTATTGAATATA+TGG - tig0028361:22424-22443 Msa1437770:intron 15.0%
!! TGTATTACTAAATCAATAAT+AGG - tig0028361:23320-23339 Msa1437770:intron 15.0%
!! GATGATATTATAATTATAGA+GGG + tig0028361:24310-24329 None:intergenic 15.0%
!! TGATGATATTATAATTATAG+AGG + tig0028361:24311-24330 None:intergenic 15.0%
!! AATTGCAACAAAAAAAAATT+AGG + tig0028361:24335-24354 None:intergenic 15.0%
!!! TTTTTTTTTGTTGCAATTTT+TGG - tig0028361:24337-24356 Msa1437770:CDS 15.0%
!! GTTGTTGTAATAATAAAAAG+AGG + tig0028361:21111-21130 None:intergenic 20.0%
!!! TATTCCTATTTTTAGGAATT+AGG + tig0028361:21239-21258 None:intergenic 20.0%
!! ATAGGAATAGAAAAAAGAAA+TGG - tig0028361:21250-21269 Msa1437770:three_prime_UTR 20.0%
!! TAGGAATAGAAAAAAGAAAT+GGG - tig0028361:21251-21270 Msa1437770:three_prime_UTR 20.0%
!! AATTATTGTTTAGGAAGAAA+AGG - tig0028361:21474-21493 Msa1437770:intron 20.0%
!! AAATAGCTAACAATACATTA+AGG + tig0028361:22927-22946 None:intergenic 20.0%
!! AAAATTAACATTGTTGCAAA+GGG + tig0028361:23079-23098 None:intergenic 20.0%
!! TAAAATTAACATTGTTGCAA+AGG + tig0028361:23080-23099 None:intergenic 20.0%
!!! AATTATCAGTTTTAATGACA+TGG - tig0028361:23449-23468 Msa1437770:intron 20.0%
!!! TTTTTCTTTCTATAATCATG+TGG + tig0028361:24072-24091 None:intergenic 20.0%
!! ATTATAGAAAGAAAAAGTCT+GGG - tig0028361:24076-24095 Msa1437770:CDS 20.0%
!!! ATGATTTGTTTGATGAAAAA+AGG + tig0028361:24280-24299 None:intergenic 20.0%
!! ATATTATAATTATAGAGGGA+AGG + tig0028361:24306-24325 None:intergenic 20.0%
!!! AAAATAGACCATTTTGTAAT+GGG + tig0028361:24920-24939 None:intergenic 20.0%
! GATTCCTAATTCCTAAAAAT+AGG - tig0028361:21232-21251 Msa1437770:three_prime_UTR 25.0%
! AGGAATAGAAAAAAGAAATG+GGG - tig0028361:21252-21271 Msa1437770:three_prime_UTR 25.0%
! TGCAATTAAAGCTATAATCT+AGG + tig0028361:21402-21421 None:intergenic 25.0%
! TATTTATCTATCTGCTAGAA+CGG - tig0028361:21723-21742 Msa1437770:intron 25.0%
!!! TGTTGATTTCAAATAGTTTG+AGG - tig0028361:21893-21912 Msa1437770:intron 25.0%
! AAAGTAAGAAAGAACAAACA+TGG + tig0028361:22198-22217 None:intergenic 25.0%
!! TAGACAATTTGATAATCTCT+AGG - tig0028361:22220-22239 Msa1437770:intron 25.0%
!! AGACAATTTGATAATCTCTA+GGG - tig0028361:22221-22240 Msa1437770:intron 25.0%
! AATGGAACAAAAATATGTGT+AGG + tig0028361:22478-22497 None:intergenic 25.0%
! ATCTATAGCTCAATTCTAAA+TGG + tig0028361:22496-22515 None:intergenic 25.0%
! CAACATGGTCTATTATTAAA+TGG + tig0028361:22567-22586 None:intergenic 25.0%
! CATTTAATAATAGACCATGT+TGG - tig0028361:22565-22584 Msa1437770:intron 25.0%
! TTGTAATTAATAGTAGCACA+CGG - tig0028361:22747-22766 Msa1437770:intron 25.0%
! TTCTCTTTGCAGATTAAAAT+TGG + tig0028361:22842-22861 None:intergenic 25.0%
!!! ATTGTTAGCTATTTTTTTCC+AGG - tig0028361:22933-22952 Msa1437770:intron 25.0%
!! TGTTGACATAAATTTTGTAC+AGG - tig0028361:23115-23134 Msa1437770:intron 25.0%
!! GTTGACATAAATTTTGTACA+GGG - tig0028361:23116-23135 Msa1437770:intron 25.0%
! AAAAAAGAGATATACCTGTT+GGG + tig0028361:23196-23215 None:intergenic 25.0%
! AAAAAAAGAGATATACCTGT+TGG + tig0028361:23197-23216 None:intergenic 25.0%
!!! CTTTTGTTGTCATAGTTATA+CGG - tig0028361:23249-23268 Msa1437770:intron 25.0%
!! TTTCCTTTTACAAAACTATG+TGG - tig0028361:23385-23404 Msa1437770:intron 25.0%
!! TTTTCAAACCCAAAAAATGA+GGG + tig0028361:23597-23616 None:intergenic 25.0%
!!! TTTTTCAAACCCAAAAAATG+AGG + tig0028361:23598-23617 None:intergenic 25.0%
!! CTAGATATAATTTTACCTCA+AGG - tig0028361:23764-23783 Msa1437770:intron 25.0%
! ATCTTAATGTACTGTTAGAA+AGG - tig0028361:23794-23813 Msa1437770:intron 25.0%
!! ATATTGCATCATCTTTTTGT+GGG + tig0028361:23925-23944 None:intergenic 25.0%
!! AATATTGCATCATCTTTTTG+TGG + tig0028361:23926-23945 None:intergenic 25.0%
! GATTATAGAAAGAAAAAGTC+TGG - tig0028361:24075-24094 Msa1437770:CDS 25.0%
! ATATCAACTCAAGATTGAAT+GGG - tig0028361:24362-24381 Msa1437770:CDS 25.0%
! AAATGTTTCGTACATCAATA+AGG + tig0028361:24557-24576 None:intergenic 25.0%
! ATATTTACAAGCATGTTACA+TGG + tig0028361:24864-24883 None:intergenic 25.0%
!! CAAAATAGACCATTTTGTAA+TGG + tig0028361:24921-24940 None:intergenic 25.0%
TGATAAAGGGATTGTAATGA+CGG - tig0028361:21150-21169 Msa1437770:three_prime_UTR 30.0%
!! GTTTGTTATGGTCAGAAATA+GGG + tig0028361:21343-21362 None:intergenic 30.0%
AATTGAGAACTTACTATGGA+AGG + tig0028361:21377-21396 None:intergenic 30.0%
GGTTAATTGAGAACTTACTA+TGG + tig0028361:21381-21400 None:intergenic 30.0%
TGACCAAATGAATGAGAAAT+TGG - tig0028361:21654-21673 Msa1437770:intron 30.0%
CAACCAATTTCTCATTCATT+TGG + tig0028361:21660-21679 None:intergenic 30.0%
ATTTATCTATCTGCTAGAAC+GGG - tig0028361:21724-21743 Msa1437770:intron 30.0%
! CTATTTGAAATCAACATCGA+AGG + tig0028361:21889-21908 None:intergenic 30.0%
TTCAAATAGTTTGAGGAATG+CGG - tig0028361:21900-21919 Msa1437770:intron 30.0%
CTTTAATTCATGGGAAGAAA+TGG - tig0028361:21941-21960 Msa1437770:intron 30.0%
AGAAATGGTTAATGATGTAC+AGG - tig0028361:21956-21975 Msa1437770:intron 30.0%
! TAATGATGTACAGGTAGTTT+TGG - tig0028361:21965-21984 Msa1437770:intron 30.0%
! TTTTGGATTAAGGCTTTTGA+AGG - tig0028361:21982-22001 Msa1437770:intron 30.0%
TATCACTTTCAACTCTTTAC+CGG - tig0028361:22104-22123 Msa1437770:intron 30.0%
TTATTTAAATACCCGACATG+AGG - tig0028361:22315-22334 Msa1437770:intron 30.0%
! AGAAGCTAAGAAACAACTTT+TGG - tig0028361:22383-22402 Msa1437770:intron 30.0%
! GAAGCTAAGAAACAACTTTT+GGG - tig0028361:22384-22403 Msa1437770:intron 30.0%
!!! TAAGAAACAACTTTTGGGTT+TGG - tig0028361:22389-22408 Msa1437770:intron 30.0%
CCTTGCATAACAATAATATG+TGG + tig0028361:22529-22548 None:intergenic 30.0%
CCACATATTATTGTTATGCA+AGG - tig0028361:22526-22545 Msa1437770:intron 30.0%
TAAATCACTGTAAACCAACA+TGG + tig0028361:22582-22601 None:intergenic 30.0%
CAATGTGATGAACATGAAAT+GGG + tig0028361:22618-22637 None:intergenic 30.0%
TCAATGTGATGAACATGAAA+TGG + tig0028361:22619-22638 None:intergenic 30.0%
TACAAAAATAAAACCAGACC+TGG + tig0028361:23035-23054 None:intergenic 30.0%
!! TTTGTTTTCACAAACATCTC+TGG - tig0028361:23152-23171 Msa1437770:intron 30.0%
!!! CATCCACATAGTTTTGTAAA+AGG + tig0028361:23391-23410 None:intergenic 30.0%
TTTACAAAACTATGTGGATG+AGG - tig0028361:23391-23410 Msa1437770:intron 30.0%
! AACATGATGCTTTTGTAACT+TGG - tig0028361:23539-23558 Msa1437770:intron 30.0%
! TTTGGGTTTGAAAAATCAGA+AGG - tig0028361:23603-23622 Msa1437770:intron 30.0%
GCAAATTGCAATATATCCTT+TGG + tig0028361:23672-23691 None:intergenic 30.0%
TATATTGCAATTTGCCATTG+AGG - tig0028361:23677-23696 Msa1437770:intron 30.0%
!! ATTAAGATGAATTAGCCTTG+AGG + tig0028361:23782-23801 None:intergenic 30.0%
TGAATTAACCACAATATTGC+AGG - tig0028361:24147-24166 Msa1437770:CDS 30.0%
CATATCAACTCAAGATTGAA+TGG - tig0028361:24361-24380 Msa1437770:CDS 30.0%
TGTATTTCCTTCAAAACATG+AGG - tig0028361:24630-24649 Msa1437770:CDS 30.0%
ACTAAAATTGAGCAAAACAG+AGG - tig0028361:24657-24676 Msa1437770:CDS 30.0%
ATGTTACATGGTGATAACAT+GGG + tig0028361:24852-24871 None:intergenic 30.0%
ACATGCTTGTAAATATTTGC+AGG - tig0028361:24868-24887 Msa1437770:five_prime_UTR 30.0%
CATGCTTGTAAATATTTGCA+GGG - tig0028361:24869-24888 Msa1437770:five_prime_UTR 30.0%
AGTTCATACCCATTACAAAA+TGG - tig0028361:24909-24928 Msa1437770:five_prime_UTR 30.0%
TTTATGCGTTGCATACTTAA+AGG - tig0028361:24964-24983 Msa1437770:five_prime_UTR 30.0%
GCATACTTAAAGGAAAATGA+AGG - tig0028361:24974-24993 Msa1437770:five_prime_UTR 30.0%
AAATGAGTCACAAAATGATG+TGG + tig0028361:25004-25023 None:intergenic 30.0%
TGGGGAAAAAGCAATCTTTA+CGG - tig0028361:21270-21289 Msa1437770:three_prime_UTR 35.0%
!! GGTTTGTTATGGTCAGAAAT+AGG + tig0028361:21344-21363 None:intergenic 35.0%
! GGTAGATGATGATGAGTTAA+AGG - tig0028361:21495-21514 Msa1437770:intron 35.0%
GAAAGTGAATCAGAGATTGA+AGG - tig0028361:21517-21536 Msa1437770:intron 35.0%
TGAGAAATTGGTTGTCAAGA+AGG - tig0028361:21666-21685 Msa1437770:intron 35.0%
GAGAAATTGGTTGTCAAGAA+GGG - tig0028361:21667-21686 Msa1437770:intron 35.0%
TCAAGAAGGGATTGTTATCT+AGG - tig0028361:21680-21699 Msa1437770:intron 35.0%
CAAGAAGGGATTGTTATCTA+GGG - tig0028361:21681-21700 Msa1437770:intron 35.0%
AAGAAGGGATTGTTATCTAG+GGG - tig0028361:21682-21701 Msa1437770:intron 35.0%
TTTGGTTGTTGATCATTTGC+CGG - tig0028361:21852-21871 Msa1437770:intron 35.0%
TGATCATTTGCCGGAAATAT+CGG - tig0028361:21861-21880 Msa1437770:intron 35.0%
TTCTTCCCATGAATTAAAGC+CGG + tig0028361:21940-21959 None:intergenic 35.0%
!!! GTACAGGTAGTTTTGGATTA+AGG - tig0028361:21972-21991 Msa1437770:intron 35.0%
TGAAATTGTACCAGCAAACT+AGG + tig0028361:22151-22170 None:intergenic 35.0%
GATTGATAAATTGAGCTGCA+CGG - tig0028361:22252-22271 Msa1437770:intron 35.0%
ATGAAATATGCACCTCATGT+CGG + tig0028361:22330-22349 None:intergenic 35.0%
ACTGACATATGATTTCTGTC+TGG - tig0028361:22449-22468 Msa1437770:intron 35.0%
CTGACATATGATTTCTGTCT+GGG - tig0028361:22450-22469 Msa1437770:intron 35.0%
! ATCACATTGATGACTTCGTA+TGG - tig0028361:22629-22648 Msa1437770:intron 35.0%
!! AGAGGGGTATTTCAAAAGTT+GGG + tig0028361:22680-22699 None:intergenic 35.0%
!! AAGAGGGGTATTTCAAAAGT+TGG + tig0028361:22681-22700 None:intergenic 35.0%
ACAATATGCCATCAACAAGA+GGG + tig0028361:22697-22716 None:intergenic 35.0%
TACAATATGCCATCAACAAG+AGG + tig0028361:22698-22717 None:intergenic 35.0%
ACCAATAAGCTTGCAAACAT+GGG + tig0028361:22799-22818 None:intergenic 35.0%
AACCAATAAGCTTGCAAACA+TGG + tig0028361:22800-22819 None:intergenic 35.0%
! AACTCAGTCTTGCTGATTAA+AGG + tig0028361:22879-22898 None:intergenic 35.0%
!!! GCTATTTTTTTCCAGGTTGT+TGG - tig0028361:22940-22959 Msa1437770:intron 35.0%
! TGGTATTTTCTCTTGTTGGA+TGG + tig0028361:23015-23034 None:intergenic 35.0%
ATCCAACAAGAGAAAATACC+AGG - tig0028361:23014-23033 Msa1437770:CDS 35.0%
! TGCTTTTGTAACTTGGAATC+TGG - tig0028361:23546-23565 Msa1437770:intron 35.0%
CATGACAATCCACAAATGTA+GGG + tig0028361:23631-23650 None:intergenic 35.0%
TCATGACAATCCACAAATGT+AGG + tig0028361:23632-23651 None:intergenic 35.0%
!! GTCTCTAAAGTCAACAGAAA+GGG + tig0028361:23715-23734 None:intergenic 35.0%
!! TGTCTCTAAAGTCAACAGAA+AGG + tig0028361:23716-23735 None:intergenic 35.0%
TTGAAACCATTAAAGATGCC+AGG + tig0028361:23828-23847 None:intergenic 35.0%
! TTTTTGTGGGCAACTTCAAT+AGG + tig0028361:23912-23931 None:intergenic 35.0%
TAGAAAGAAAAAGTCTGGGT+TGG - tig0028361:24080-24099 Msa1437770:CDS 35.0%
!! AGGTCATTTTGCGCTTTATT+TGG - tig0028361:24224-24243 Msa1437770:CDS 35.0%
!!! TCATTTTGCGCTTTATTTGG+AGG - tig0028361:24227-24246 Msa1437770:CDS 35.0%
!!! CATTTTGCGCTTTATTTGGA+GGG - tig0028361:24228-24247 Msa1437770:CDS 35.0%
AAGATTGAATGGGTCAAGTT+CGG - tig0028361:24372-24391 Msa1437770:CDS 35.0%
ACAAGGATTGCCATAAGTTT+CGG + tig0028361:24401-24420 None:intergenic 35.0%
! TTCTCCAGAATTTCAAGTGA+AGG - tig0028361:24429-24448 Msa1437770:CDS 35.0%
ACTTCCTTCACTTGAAATTC+TGG + tig0028361:24436-24455 None:intergenic 35.0%
! ATTTCAAGTGAAGGAAGTAG+AGG - tig0028361:24438-24457 Msa1437770:CDS 35.0%
AACAGATTGATAAAAAGGGG+GGG + tig0028361:24515-24534 None:intergenic 35.0%
GAACAGATTGATAAAAAGGG+GGG + tig0028361:24516-24535 None:intergenic 35.0%
GGAACAGATTGATAAAAAGG+GGG + tig0028361:24517-24536 None:intergenic 35.0%
CGGAACAGATTGATAAAAAG+GGG + tig0028361:24518-24537 None:intergenic 35.0%
CCGGAACAGATTGATAAAAA+GGG + tig0028361:24519-24538 None:intergenic 35.0%
! CCCTTTTTATCAATCTGTTC+CGG - tig0028361:24516-24535 Msa1437770:intron 35.0%
TGTTTCGTACATCAATAAGG+AGG + tig0028361:24554-24573 None:intergenic 35.0%
!! AGTATCTCCTCATGTTTTGA+AGG + tig0028361:24640-24659 None:intergenic 35.0%
AATTGCAATTTCTGCTAGCA+AGG - tig0028361:24780-24799 Msa1437770:five_prime_UTR 35.0%
ATTGCAATTTCTGCTAGCAA+GGG - tig0028361:24781-24800 Msa1437770:five_prime_UTR 35.0%
CATGTTACATGGTGATAACA+TGG + tig0028361:24853-24872 None:intergenic 35.0%
TTGCATGTTCAGTGTCAAAC+TGG + tig0028361:20932-20951 None:intergenic 40.0%
TGACACTGAACATGCAAACA+AGG - tig0028361:20935-20954 Msa1437770:three_prime_UTR 40.0%
!! TCGCTTTTCTGAGTCATCAT+CGG + tig0028361:20996-21015 None:intergenic 40.0%
!! GATGTTGATGATTATGCTGC+CGG + tig0028361:21084-21103 None:intergenic 40.0%
TAATGACGGTGAGGGAATAT+AGG - tig0028361:21164-21183 Msa1437770:three_prime_UTR 40.0%
! CAAAGCAGTTCACCTTGTTT+CGG - tig0028361:21295-21314 Msa1437770:exon 40.0%
AATAGGGTTGAGAAGAACAG+TGG + tig0028361:21327-21346 None:intergenic 40.0%
TGAGAACTTACTATGGAAGG+AGG + tig0028361:21374-21393 None:intergenic 40.0%
!! TTCATTTTTGTCGTCCTCGT+CGG - tig0028361:21573-21592 Msa1437770:CDS 40.0%
!! ATTATCTCTAGAATCCGACG+AGG + tig0028361:21590-21609 None:intergenic 40.0%
TTCCAACACAAGATCGTGAA+AGG - tig0028361:21752-21771 Msa1437770:CDS 40.0%
TCCAACACAAGATCGTGAAA+GGG - tig0028361:21753-21772 Msa1437770:CDS 40.0%
AGGGATAGATTTGAGTCTGA+TGG - tig0028361:21772-21791 Msa1437770:CDS 40.0%
GGGATAGATTTGAGTCTGAT+GGG - tig0028361:21773-21792 Msa1437770:CDS 40.0%
ACACTAGGAACCTCTTTCAA+CGG + tig0028361:21829-21848 None:intergenic 40.0%
GGCAAATGATCAACAACCAA+AGG + tig0028361:21853-21872 None:intergenic 40.0%
ATCGAAGGTTCCGATATTTC+CGG + tig0028361:21874-21893 None:intergenic 40.0%
! CACTTCCGGCTTTAATTCAT+GGG - tig0028361:21932-21951 Msa1437770:intron 40.0%
TTTGCAGCACATGGAAACAT+GGG - tig0028361:22080-22099 Msa1437770:intron 40.0%
! TTTACCGGAGAAGTATGCTT+TGG - tig0028361:22119-22138 Msa1437770:intron 40.0%
ACATGGATAACTCATTGTGC+TGG + tig0028361:22181-22200 None:intergenic 40.0%
TGAAATATGCACCTCATGTC+GGG + tig0028361:22329-22348 None:intergenic 40.0%
!!! GAAACAACTTTTGGGTTTGG+TGG - tig0028361:22392-22411 Msa1437770:intron 40.0%
GATGACTTCGTATGGATGAA+TGG - tig0028361:22637-22656 Msa1437770:intron 40.0%
TGAAATACCCCTCTTGTTGA+TGG - tig0028361:22686-22705 Msa1437770:intron 40.0%
CAATATGCCATCAACAAGAG+GGG + tig0028361:22696-22715 None:intergenic 40.0%
TAGTAGCACACGGAGTTTAA+CGG - tig0028361:22757-22776 Msa1437770:intron 40.0%
TCCCATGTTTGCAAGCTTAT+TGG - tig0028361:22795-22814 Msa1437770:intron 40.0%
GGTTAATAAGCTCATGCTGT+TGG - tig0028361:22816-22835 Msa1437770:CDS 40.0%
GTTCTACACTCTACATTCAG+TGG - tig0028361:22896-22915 Msa1437770:intron 40.0%
TACACTCTACATTCAGTGGT+TGG - tig0028361:22900-22919 Msa1437770:intron 40.0%
! GACCTGGTATTTTCTCTTGT+TGG + tig0028361:23019-23038 None:intergenic 40.0%
ACAAGAGAAAATACCAGGTC+TGG - tig0028361:23019-23038 Msa1437770:CDS 40.0%
TAATGACATGGTATCCCACA+CGG - tig0028361:23461-23480 Msa1437770:intron 40.0%
ATATATCCTTTGGCAAGACG+TGG + tig0028361:23662-23681 None:intergenic 40.0%
GGAAATCAAGCTTTCCTCAA+TGG + tig0028361:23694-23713 None:intergenic 40.0%
GTTAGAAAGGATGAGTTTCC+TGG - tig0028361:23807-23826 Msa1437770:intron 40.0%
GAGTTTCCTGGCATCTTTAA+TGG - tig0028361:23819-23838 Msa1437770:intron 40.0%
!! AGAAAAAGTCTGGGTTGGTT+TGG - tig0028361:24085-24104 Msa1437770:CDS 40.0%
GGTTTACTCCTGCAATATTG+TGG + tig0028361:24158-24177 None:intergenic 40.0%
TGGTGCAAAGTGTGAAGTAA+CGG + tig0028361:24179-24198 None:intergenic 40.0%
AGTTCGGTTTCCGAAACTTA+TGG - tig0028361:24388-24407 Msa1437770:CDS 40.0%
TCTGGAGAATGTGCTAAACA+AGG + tig0028361:24418-24437 None:intergenic 40.0%
TTGATAAAAAGGGGGGGAAA+AGG + tig0028361:24509-24528 None:intergenic 40.0%
GCCGGAACAGATTGATAAAA+AGG + tig0028361:24520-24539 None:intergenic 40.0%
AAGGAGGTAAACAAATGAGC+CGG + tig0028361:24538-24557 None:intergenic 40.0%
TCAGTAAAATGCGAACTGCA+AGG + tig0028361:24738-24757 None:intergenic 40.0%
TTACATGGTGATAACATGGG+TGG + tig0028361:24849-24868 None:intergenic 40.0%
AAGTTTCGTGCCTCAACAAC+CGG - tig0028361:21044-21063 Msa1437770:three_prime_UTR 45.0%
AAGGGATTGTAATGACGGTG+AGG - tig0028361:21155-21174 Msa1437770:three_prime_UTR 45.0%
AGGGATTGTAATGACGGTGA+GGG - tig0028361:21156-21175 Msa1437770:three_prime_UTR 45.0%
GATAAGATTGTGACTGCAGC+TGG - tig0028361:21622-21641 Msa1437770:intron 45.0%
TATCTATCTGCTAGAACGGG+TGG - tig0028361:21727-21746 Msa1437770:intron 45.0%
TCCCTTTCACGATCTTGTGT+TGG + tig0028361:21757-21776 None:intergenic 45.0%
! AGATTTGAGTCTGATGGGTG+TGG - tig0028361:21778-21797 Msa1437770:CDS 45.0%
! TTTTCAACCGCCGTTGAAAG+AGG - tig0028361:21816-21835 Msa1437770:intron 45.0%
! TCAACAACCAAAGGCACACT+AGG + tig0028361:21844-21863 None:intergenic 45.0%
TGCGGTTTATGATGCACTTC+CGG - tig0028361:21918-21937 Msa1437770:intron 45.0%
! GCACTTCCGGCTTTAATTCA+TGG - tig0028361:21931-21950 Msa1437770:intron 45.0%
! TGTCGTTTCTTTGCAGCACA+TGG - tig0028361:22071-22090 Msa1437770:intron 45.0%
CTTTGCAGCACATGGAAACA+TGG - tig0028361:22079-22098 Msa1437770:intron 45.0%
GGATAACTCATTGTGCTGGA+GGG + tig0028361:22177-22196 None:intergenic 45.0%
TGGATAACTCATTGTGCTGG+AGG + tig0028361:22178-22197 None:intergenic 45.0%
CTGCACGGTAGATTAGAGAT+AGG - tig0028361:22267-22286 Msa1437770:intron 45.0%
!!! ACAACTTTTGGGTTTGGTGG+TGG - tig0028361:22395-22414 Msa1437770:intron 45.0%
!!! CAACTTTTGGGTTTGGTGGT+GGG - tig0028361:22396-22415 Msa1437770:intron 45.0%
AGTAGCACACGGAGTTTAAC+GGG - tig0028361:22758-22777 Msa1437770:intron 45.0%
! CACCAAACACTGCTCCTTTT+CGG + tig0028361:22969-22988 None:intergenic 45.0%
TCTCTTGTTGGATGGTCGAA+GGG + tig0028361:23007-23026 None:intergenic 45.0%
TTCTCTTGTTGGATGGTCGA+AGG + tig0028361:23008-23027 None:intergenic 45.0%
AATGACATGGTATCCCACAC+GGG - tig0028361:23462-23481 Msa1437770:intron 45.0%
AACCCAAAAAATGAGGGCGA+CGG + tig0028361:23591-23610 None:intergenic 45.0%
ATTGTACCACGTCTTGCCAA+AGG - tig0028361:23653-23672 Msa1437770:intron 45.0%
!! TATCTCTGAGATTCAGCACG+AGG - tig0028361:23970-23989 Msa1437770:intron 45.0%
!! ACCACTGACTTTCTAGCGAT+TGG - tig0028361:24195-24214 Msa1437770:CDS 45.0%
ACCAATCGCTAGAAAGTCAG+TGG + tig0028361:24199-24218 None:intergenic 45.0%
! ACTGACTTTCTAGCGATTGG+TGG - tig0028361:24198-24217 Msa1437770:CDS 45.0%
! CTGACTTTCTAGCGATTGGT+GGG - tig0028361:24199-24218 Msa1437770:CDS 45.0%
! TGACTTTCTAGCGATTGGTG+GGG - tig0028361:24200-24219 Msa1437770:CDS 45.0%
GTTCATGTGTCTGTGAGTGA+GGG + tig0028361:24478-24497 None:intergenic 45.0%
AAAAAGGGGGGGAAAAGGTT+GGG + tig0028361:24504-24523 None:intergenic 45.0%
TAAAAAGGGGGGGAAAAGGT+TGG + tig0028361:24505-24524 None:intergenic 45.0%
TCTTTCCTCCATGCAGTTGT+GGG - tig0028361:24603-24622 Msa1437770:intron 45.0%
CTGAGTCATCATCGGTCACT+CGG + tig0028361:20988-21007 None:intergenic 50.0%
!! GAAGCGTTTTCCGGTTGTTG+AGG + tig0028361:21057-21076 None:intergenic 50.0%
ACCGGAAAACGCTTCTACAC+CGG - tig0028361:21062-21081 Msa1437770:three_prime_UTR 50.0%
CAGTGGTGAGATCCGAAACA+AGG + tig0028361:21310-21329 None:intergenic 50.0%
!! GAGGACGAGAGGGTTTGTTA+TGG + tig0028361:21355-21374 None:intergenic 50.0%
ACTATGGAAGGAGGACGAGA+GGG + tig0028361:21365-21384 None:intergenic 50.0%
TACTATGGAAGGAGGACGAG+AGG + tig0028361:21366-21385 None:intergenic 50.0%
GCAGTAAACGACGACGTATC+AGG + tig0028361:21544-21563 None:intergenic 50.0%
CTAGGAACCTCTTTCAACGG+CGG + tig0028361:21826-21845 None:intergenic 50.0%
AGAGGTTCCTAGTGTGCCTT+TGG - tig0028361:21834-21853 Msa1437770:intron 50.0%
CAGGCCAAAGCATACTTCTC+CGG + tig0028361:22126-22145 None:intergenic 50.0%
TGTACCAGCAAACTAGGTCC+AGG + tig0028361:22145-22164 None:intergenic 50.0%
AACATGGGACTTCAACACGC+AGG + tig0028361:22784-22803 None:intergenic 50.0%
! CTTTTCGGTCTCCAACAACC+TGG + tig0028361:22954-22973 None:intergenic 50.0%
CAGGTTGTTGGAGACCGAAA+AGG - tig0028361:22952-22971 Msa1437770:intron 50.0%
GACCGAAAAGGAGCAGTGTT+TGG - tig0028361:22964-22983 Msa1437770:intron 50.0%
CGAAAAGGAGCAGTGTTTGG+TGG - tig0028361:22967-22986 Msa1437770:CDS 50.0%
CTCTTGTTGGATGGTCGAAG+GGG + tig0028361:23006-23025 None:intergenic 50.0%
GTGCACATCATAACCCGTGT+GGG + tig0028361:23478-23497 None:intergenic 50.0%
TGTGCACATCATAACCCGTG+TGG + tig0028361:23479-23498 None:intergenic 50.0%
AAAAAATGAGGGCGACGGGT+GGG + tig0028361:23586-23605 None:intergenic 50.0%
!!! ACCCGTCGCCCTCATTTTTT+GGG - tig0028361:23586-23605 Msa1437770:intron 50.0%
ACCCAAAAAATGAGGGCGAC+GGG + tig0028361:23590-23609 None:intergenic 50.0%
CAGAAGGCTCCCTACATTTG+TGG - tig0028361:23619-23638 Msa1437770:intron 50.0%
! GACTTTCTAGCGATTGGTGG+GGG - tig0028361:24201-24220 Msa1437770:CDS 50.0%
GGTTCATGTGTCTGTGAGTG+AGG + tig0028361:24479-24498 None:intergenic 50.0%
AAAAGGGGGGGAAAAGGTTG+GGG + tig0028361:24503-24522 None:intergenic 50.0%
CTCTTTCCTCCATGCAGTTG+TGG - tig0028361:24602-24621 Msa1437770:intron 50.0%
CTTTCCTCCATGCAGTTGTG+GGG - tig0028361:24604-24623 Msa1437770:intron 50.0%
TACAAAGCCCCACAACTGCA+TGG + tig0028361:24614-24633 None:intergenic 50.0%
!! TTGAGCAAAACAGAGGCACC+TGG - tig0028361:24664-24683 Msa1437770:CDS 50.0%
!! TGAGCAAAACAGAGGCACCT+GGG - tig0028361:24665-24684 Msa1437770:CDS 50.0%
ATTTACCAGCGAGAGATCCC+AGG + tig0028361:24685-24704 None:intergenic 50.0%
AGTCATCATCGGTCACTCGG+CGG + tig0028361:20985-21004 None:intergenic 55.0%
!!! GCCGGTGTAGAAGCGTTTTC+CGG + tig0028361:21066-21085 None:intergenic 55.0%
ATTGTGACTGCAGCTGGAGC+TGG - tig0028361:21628-21647 Msa1437770:intron 55.0%
! TGAGTCTGATGGGTGTGGTG+TGG - tig0028361:21783-21802 Msa1437770:CDS 55.0%
! CGGAGAAGTATGCTTTGGCC+TGG - tig0028361:22124-22143 Msa1437770:intron 55.0%
! TTGGCCTGGACCTAGTTTGC+TGG - tig0028361:22138-22157 Msa1437770:intron 55.0%
! AGGAGCAGTGTTTGGTGGCT+TGG - tig0028361:22972-22991 Msa1437770:CDS 55.0%
CCTGTTGGGCGATATACGAC+AGG + tig0028361:23182-23201 None:intergenic 55.0%
CCTGTCGTATATCGCCCAAC+AGG - tig0028361:23179-23198 Msa1437770:intron 55.0%
CAAAAAATGAGGGCGACGGG+TGG + tig0028361:23587-23606 None:intergenic 55.0%
!!! CACCCGTCGCCCTCATTTTT+TGG - tig0028361:23585-23604 Msa1437770:intron 55.0%
! TTTCTAGCGATTGGTGGGGG+AGG - tig0028361:24204-24223 Msa1437770:CDS 55.0%
AAAGCCCCACAACTGCATGG+AGG + tig0028361:24611-24630 None:intergenic 55.0%
AGGGGGGGAAAAGGTTGGGG+AGG + tig0028361:24500-24519 None:intergenic 65.0%
AGGCACCTGGGATCTCTCGC+TGG - tig0028361:24677-24696 Msa1437770:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0028361 gene 20923 25077 20923 ID=Msa1437770;Name=Msa1437770
tig0028361 mRNA 20923 25077 20923 ID=Msa1437770-mRNA-1;Parent=Msa1437770;Name=Msa1437770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=346|1|1|1|1|1|8|375|359
tig0028361 exon 20923 21381 20923 ID=Msa1437770-mRNA-1:exon:10895;Parent=Msa1437770-mRNA-1
tig0028361 exon 21541 21625 21541 ID=Msa1437770-mRNA-1:exon:10894;Parent=Msa1437770-mRNA-1
tig0028361 exon 21744 21831 21744 ID=Msa1437770-mRNA-1:exon:10893;Parent=Msa1437770-mRNA-1
tig0028361 exon 22800 22863 22800 ID=Msa1437770-mRNA-1:exon:10892;Parent=Msa1437770-mRNA-1
tig0028361 exon 22965 23045 22965 ID=Msa1437770-mRNA-1:exon:10891;Parent=Msa1437770-mRNA-1
tig0028361 exon 23841 23913 23841 ID=Msa1437770-mRNA-1:exon:10890;Parent=Msa1437770-mRNA-1
tig0028361 exon 24023 24513 24023 ID=Msa1437770-mRNA-1:exon:10889;Parent=Msa1437770-mRNA-1
tig0028361 exon 24618 25077 24618 ID=Msa1437770-mRNA-1:exon:10888;Parent=Msa1437770-mRNA-1
tig0028361 five_prime_UTR 24732 25077 24732 ID=Msa1437770-mRNA-1:five_prime_utr;Parent=Msa1437770-mRNA-1
tig0028361 CDS 24618 24731 24618 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 CDS 24023 24513 24023 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 CDS 23841 23913 23841 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 CDS 22965 23045 22965 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 CDS 22800 22863 22800 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 CDS 21744 21831 21744 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 CDS 21541 21625 21541 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 CDS 21298 21381 21298 ID=Msa1437770-mRNA-1:cds;Parent=Msa1437770-mRNA-1
tig0028361 three_prime_UTR 20923 21297 20923 ID=Msa1437770-mRNA-1:three_prime_utr;Parent=Msa1437770-mRNA-1
Gene Sequence

>Msa1437770

ATGGGGAAAAAGCAATCTTTACGGAGCAAAGCAGTTCACCTTGTTTCGGATCTCACCACTGTTCTTCTCAACCCTATTTCTGACCATAACAAACCCTCTCGTCCTCCTTCCATAGAAGAAAAGGTAGATGATGATGAGTTAAAGGAAAGTGAATCAGAGATTGAAGGACCTGATACGTCGTCGTTTACTGCATTCTTATATTCATTTTTGTCGTCCTCGTCGGATTCTAGAGATAATAATGCAAATGATGATAAGATTGTGACTGCAGCTGGAGCTGGTGATGACCAAATGAATGAGAAATTGGTTGTCAAGAAGGGATTGTTATCTAGGGGTAAACAATCACTTAAATCTATTTATCTATCTGCTAGAACGGGTGGATTTCCAACACAAGATCGTGAAAGGGATAGATTTGAGTCTGATGGGTGTGGTGTGGAGATGAAATGTTTTCAACCGCCGTTGAAAGAGGTTCCTAGTGTGCCTTTGGTTGTTGATCATTTGCCGGAAATATCGGAACCTTCGATGTTGATTTCAAATAGTTTGAGGAATGCGGTTTATGATGCACTTCCGGCTTTAATTCATGGGAAGAAATGGTTAATGATGTACAGCACATGGAAACATGGGATATCACTTTCAACTCTTTACCGGAGAAGTATGCTTTGGCCTGGACCTAGTTTGCTGGTTGTTGGAGACCGAAAAGGAGCAGTGTTTGGTGGCTTGGTTGAAGCACCCCTTCGACCATCCAACAAGAGAAAATACCAGGGAACAAACAGTACATTTGTTTTCACAAACATCTCTGGTCATCCTGTCGTATATCGCCCAACAGGAGTAAACCGTTACTTCACACTTTGCACCACTGACTTTCTAGCGATTGGTGGGGGAGGTCATTTTGCGCTTTATTTGGAGGGTGATCTATTGAATGGGTCAAGTTCGGTTTCCGAAACTTATGGCAATCCTTGTTTAGCACATTCTCCAGAATTTCAAGTGAAGGAAGTAGAGTTGTGGGGCTTTGTATTTCCTTCAAAACATGAGGAGATACTAAAATTGAGCAAAACAGAGGCACCTGGGATCTCTCGCTGGTAA
Protein sequence

>Msa1437770

MGKKQSLRSKAVHLVSDLTTVLLNPISDHNKPSRPPSIEEKVDDDELKESESEIEGPDTSSFTAFLYSFLSSSSDSRDNNANDDKIVTAAGAGDDQMNEKLVVKKGLLSRGKQSLKSIYLSARTGGFPTQDRERDRFESDGCGVEMKCFQPPLKEVPSVPLVVDHLPEISEPSMLISNSLRNAVYDALPALIHGKKWLMMYSTWKHGISLSTLYRRSMLWPGPSLLVVGDRKGAVFGGLVEAPLRPSNKRKYQGTNSTFVFTNISGHPVVYRPTGVNRYFTLCTTDFLAIGGGGHFALYLEGDLLNGSSSVSETYGNPCLAHSPEFQVKEVELWGFVFPSKHEEILKLSKTEAPGISRW*