AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104230 MtrunA17_Chr1g0147121 82.008 956 9 6 1 820 106 1034 0.0 1526
Msa0104230 MtrunA17_Chr3g0126701 61.905 987 167 18 1 820 119 1063 0.0 1130
Msa0104230 MtrunA17_Chr7g0275611 51.770 819 260 10 97 820 186 964 0.0 810
Msa0104230 MtrunA17_Chr8g0347071 49.231 845 266 11 97 820 147 949 0.0 790
Msa0104230 MtrunA17_Chr7g0221611 31.624 468 271 14 388 820 592 1045 1.52e-46 180
Msa0104230 MtrunA17_Chr1g0149611 47.887 142 67 4 684 820 369 508 7.52e-33 134
Msa0104230 MtrunA17_Chr1g0149581 47.183 142 68 4 684 820 1527 1666 1.32e-31 133
Msa0104230 MtrunA17_Chr2g0297191 42.568 148 80 3 674 820 1028 1171 7.73e-30 127
Msa0104230 MtrunA17_Chr5g0401921 36.170 141 88 2 659 799 695 833 1.83e-21 100
Msa0104230 MtrunA17_Chr1g0194631 36.800 125 77 2 676 800 608 730 1.07e-20 97.8
Msa0104230 MtrunA17_Chr1g0201621 36.424 151 92 3 670 819 76 223 6.48e-20 94.0
Msa0104230 MtrunA17_Chr1g0201311 35.762 151 93 3 670 819 76 223 2.10e-19 92.4
Msa0104230 MtrunA17_Chr2g0305371 36.765 136 75 5 689 820 344 472 4.72e-18 88.2
Msa0104230 MtrunA17_Chr7g0235081 33.088 136 87 3 667 800 183 316 6.38e-17 83.2
Msa0104230 MtrunA17_Chr7g0270001 34.400 125 78 3 676 799 146 267 6.93e-16 79.3
Msa0104230 MtrunA17_Chr6g0477001 36.923 130 77 3 689 817 123 248 3.23e-15 77.8
Msa0104230 MtrunA17_Chr3g0125251 30.573 157 94 4 670 819 1316 1464 1.66e-14 78.2
Msa0104230 MtrunA17_Chr3g0115211 36.441 118 62 5 400 505 293 409 7.19e-14 76.3
Msa0104230 MtrunA17_Chr5g0403241 33.333 150 69 7 689 816 1363 1503 4.80e-13 73.6
Msa0104230 MtrunA17_Chr7g0255181 30.818 159 83 5 684 819 550 704 5.20e-11 66.2
Msa0104230 MtrunA17_Chr5g0399801 30.357 168 74 5 689 819 927 1088 7.43e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104230 AT5G53430.1 54.902 969 254 12 1 820 109 1043 0.0 1018
Msa0104230 AT4G27910.1 55.929 953 250 13 1 820 112 1027 0.0 993
Msa0104230 AT3G61740.2 44.963 943 350 18 1 820 86 982 0.0 781
Msa0104230 AT3G61740.1 43.135 976 356 17 1 820 86 1018 0.0 768
Msa0104230 AT1G05830.2 30.058 519 280 18 351 820 575 1059 3.15e-55 207
Msa0104230 AT1G05830.4 30.058 519 280 18 351 820 575 1059 3.15e-55 207
Msa0104230 AT1G05830.1 30.058 519 280 18 351 820 575 1059 3.15e-55 207
Msa0104230 AT1G05830.3 30.058 519 280 18 351 820 575 1059 3.15e-55 207
Msa0104230 AT2G31650.1 30.891 505 290 18 351 820 558 1038 3.31e-54 204
Msa0104230 AT5G42400.7 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT5G42400.2 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT5G42400.8 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT5G42400.5 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT5G42400.4 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT5G42400.1 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT5G42400.3 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT5G42400.6 42.500 160 79 5 662 820 1241 1388 5.88e-30 128
Msa0104230 AT2G23380.2 35.256 156 92 4 659 813 506 653 3.28e-21 99.4
Msa0104230 AT2G23380.1 35.256 156 92 4 659 813 733 880 4.97e-21 99.4
Msa0104230 AT1G02580.1 36.508 126 78 2 677 802 543 666 8.18e-20 95.1
Msa0104230 AT4G02020.1 35.200 125 79 2 676 800 705 827 2.73e-19 93.6
Msa0104230 AT1G76710.2 40.000 140 76 4 681 819 96 228 3.06e-19 92.4
Msa0104230 AT1G76710.1 40.000 140 76 4 681 819 96 228 3.06e-19 92.4
Msa0104230 AT1G76710.3 40.000 140 76 4 681 819 96 228 3.26e-19 92.4
Msa0104230 AT1G76710.4 40.000 140 76 4 681 819 96 228 3.27e-19 92.4
Msa0104230 AT4G30860.1 35.338 133 81 3 689 820 337 465 8.68e-17 84.7
Msa0104230 AT3G59960.3 37.879 132 73 4 689 817 122 247 2.76e-16 80.9
Msa0104230 AT3G59960.2 37.879 132 73 4 689 817 122 247 2.76e-16 80.9
Msa0104230 AT3G59960.4 37.879 132 73 4 689 817 122 247 2.76e-16 80.9
Msa0104230 AT3G59960.1 37.879 132 73 4 689 817 122 247 3.99e-16 80.9
Msa0104230 AT2G44150.1 36.154 130 78 3 689 817 127 252 2.30e-15 79.3
Msa0104230 AT2G23740.3 36.129 155 79 5 684 820 1230 1382 6.92e-15 79.7
Msa0104230 AT2G23740.6 36.129 155 79 5 684 820 1230 1382 6.92e-15 79.7
Msa0104230 AT2G23740.2 36.129 155 79 5 684 820 1230 1382 6.92e-15 79.7
Msa0104230 AT2G23740.1 36.129 155 79 5 684 820 1223 1375 6.97e-15 79.7
Msa0104230 AT3G14740.1 42.574 101 50 4 400 494 153 251 3.74e-14 75.1
Msa0104230 AT3G14740.2 42.574 101 50 4 400 494 153 251 3.85e-14 75.1
Msa0104230 AT2G35160.5 38.136 118 61 3 689 800 622 733 1.42e-13 75.1
Msa0104230 AT2G35160.2 38.136 118 61 3 689 800 658 769 1.56e-13 75.1
Msa0104230 AT2G35160.3 38.136 118 61 3 689 800 658 769 1.56e-13 75.1
Msa0104230 AT2G35160.1 38.136 118 61 3 689 800 658 769 1.56e-13 75.1
Msa0104230 AT2G35160.4 38.136 118 61 3 689 800 658 769 1.56e-13 75.1
Msa0104230 AT1G77300.2 30.070 143 85 4 684 819 1032 1166 9.96e-13 72.8
Msa0104230 AT1G77300.1 30.070 143 85 4 684 819 1032 1166 1.00e-12 72.8
Msa0104230 AT2G22740.2 30.769 169 73 4 689 819 627 789 2.62e-12 71.2
Msa0104230 AT2G22740.1 30.769 169 73 4 689 819 627 789 2.62e-12 71.2
Msa0104230 AT4G02020.4 32.979 94 62 1 676 769 705 797 3.49e-12 70.9

Find 190 sgRNAs with CRISPR-Local

Find 621 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAGAAAATTCATGAATT+AGG 0.216902 1_3:-11739583 Msa0104230:exon
CGGCACCTAGCAGCAGAAAA+TGG 0.228335 1_3:+11742264 None:intergenic
GCTACTTGTGTCATGTTTCT+TGG 0.243888 1_3:-11748445 Msa0104230:CDS
ATGATCCTTGCATAGCAATT+TGG 0.261106 1_3:+11740091 None:intergenic
GACTTTGCATGGGTGAAGTA+TGG 0.264743 1_3:-11748261 Msa0104230:CDS
GAAGCTGACTTACCTTCTTC+TGG 0.270047 1_3:+11747902 None:intergenic
GGCGCAGCGTTGCCGATCTA+AGG 0.299987 1_3:-11740607 Msa0104230:CDS
AAAACAAGTATTCAGGTTAA+AGG 0.304307 1_3:-11745763 Msa0104230:CDS
ATAAATCTATACAATGTAAT+AGG 0.310247 1_3:+11739349 None:intergenic
CGGCAGAGGGCGAGGGTATT+CGG 0.313975 1_3:-11748729 Msa0104230:CDS
ATCTGTTTCTTGTAGAATCT+TGG 0.324342 1_3:-11746984 Msa0104230:intron
ATCACAATTGCAGGCCAAAA+TGG 0.325083 1_3:+11748520 None:intergenic
GGAACGCCTTCATCACTTAC+AGG 0.327035 1_3:-11741490 Msa0104230:intron
TTGAATTCATCTGGCTCATC+AGG 0.327517 1_3:+11739633 None:intergenic
TCATGTTCGGTGTTATCTTC+TGG 0.329697 1_3:+11742288 None:intergenic
GTAATGGATAAACCTTAAAA+AGG 0.335499 1_3:+11747093 None:intergenic
TGTTGTCTTTGTCCTGTAAA+AGG 0.339460 1_3:-11744388 Msa0104230:intron
CAGGTTCCAAATTTAGAAAC+TGG 0.340357 1_3:-11745786 Msa0104230:CDS
GCGGCATATGTAAGAAAGTT+TGG 0.341078 1_3:-11747310 Msa0104230:CDS
TTGGGCTAAGGCTAGGAAAA+AGG 0.342113 1_3:-11748545 Msa0104230:intron
TAAGAACGAACCACACAAAA+AGG 0.347804 1_3:-11742233 Msa0104230:intron
ATAGATTTATTAGCAGCTTT+TGG 0.348919 1_3:-11739336 Msa0104230:three_prime_UTR
AAACTGGAAAACAAGTATTC+AGG 0.350556 1_3:-11745770 Msa0104230:CDS
ATGATTCAGTTATTGTCAAT+TGG 0.376221 1_3:-11748895 Msa0104230:CDS
CTACTGATATCGATCCGTTA+TGG 0.381071 1_3:-11744076 Msa0104230:CDS
TGTATAATCAAAACAGTGTC+TGG 0.388765 1_3:+11742414 None:intergenic
ATCCAAAATAAGAGAAAAGT+TGG 0.389775 1_3:-11742357 Msa0104230:CDS
CTTGTTCACCACGATATTCA+AGG 0.391426 1_3:+11740633 None:intergenic
AATGCGGCCGCGACGTCTGC+AGG 0.391676 1_3:-11748854 Msa0104230:CDS
GAATAGTTCTTCGTGCAAAT+AGG 0.394924 1_3:+11741328 None:intergenic
CAAGGGACTTTGAATTCATC+TGG 0.400557 1_3:+11739624 None:intergenic
GGGAAGAATGGAACTGGAAA+TGG 0.402090 1_3:-11748755 Msa0104230:CDS
AATTTCGTCGAACAGAATAA+AGG 0.404614 1_3:-11742325 Msa0104230:CDS
GTAGTTGATGCAACTGATAA+AGG 0.404950 1_3:-11740348 Msa0104230:CDS
ATGGCATCAATCACAATTGC+AGG 0.410340 1_3:+11748511 None:intergenic
TACTGATATCGATCCGTTAT+GGG 0.411107 1_3:-11744075 Msa0104230:CDS
AACGATGTGCTGTATGTAGA+TGG 0.415395 1_3:-11745024 Msa0104230:CDS
TGGTGTTGCTGCTACTAGTA+AGG 0.417535 1_3:-11748675 Msa0104230:CDS
AATGGAACCGGCAGAGGGCG+AGG 0.417953 1_3:-11748737 Msa0104230:CDS
ACCTTCACGAAAGAATTTGA+TGG 0.418537 1_3:+11743966 None:intergenic
TCCCACATTGCTTAGATACT+TGG 0.421906 1_3:-11741999 Msa0104230:CDS
TGAGAAAATGGAGCCTGCTT+TGG 0.422218 1_3:-11744003 Msa0104230:CDS
GAGGTGTTGCATAAGAATTT+TGG 0.422799 1_3:-11748695 Msa0104230:CDS
AAACTCTAAGAAAGCATTTG+AGG 0.423296 1_3:+11739394 None:intergenic
GGGTTCATGTCACTTGTGCC+TGG 0.424544 1_3:-11744055 Msa0104230:CDS
ATCAAAACAGTGTCTGGATT+GGG 0.425217 1_3:+11742420 None:intergenic
CGAGTGTGCTTCGGTAGATC+AGG 0.427137 1_3:-11741366 Msa0104230:CDS
CCATGATATCGCTGGAACAA+TGG 0.437444 1_3:-11745738 Msa0104230:CDS
GTAAATACAGTTGCATAGTT+CGG 0.445265 1_3:-11742687 Msa0104230:intron
GAGAAAATGGAGCCTGCTTT+GGG 0.448422 1_3:-11744002 Msa0104230:CDS
AATGCGGTGGCTGGTAATAA+TGG 0.448850 1_3:-11747976 Msa0104230:CDS
AACTATTCAAGAAGGAGAAA+TGG 0.449584 1_3:-11741313 Msa0104230:intron
CCATTGTTCCAGCGATATCA+TGG 0.453895 1_3:+11745738 None:intergenic
CATGATATCGCTGGAACAAT+GGG 0.458105 1_3:-11745737 Msa0104230:intron
GTTCCCATTGATGCTGCAAC+CGG 0.460247 1_3:+11739511 None:intergenic
TGCAATGGGAAGGGGAAGAA+TGG 0.462225 1_3:-11748767 Msa0104230:CDS
ATCAATCGGATAGCGGAAGT+TGG 0.464352 1_3:-11747286 Msa0104230:CDS
GACTTCTCAGATGCTACAGT+TGG 0.466119 1_3:-11745279 Msa0104230:intron
TATGTAGATGGGTTGAAGAT+TGG 0.467381 1_3:-11745012 Msa0104230:CDS
ATTGTCAATTGGAGGAAAGA+TGG 0.470611 1_3:-11748884 Msa0104230:CDS
ACTGGAAATGGAACCGGCAG+AGG 0.470891 1_3:-11748743 Msa0104230:CDS
GTAGTCCACTTAGCACAAAC+AGG 0.473047 1_3:+11745049 None:intergenic
ATGTAGATGGGTTGAAGATT+GGG 0.473122 1_3:-11745011 Msa0104230:CDS
GGCACCTAGCAGCAGAAAAT+GGG 0.475782 1_3:+11742265 None:intergenic
CTAACCGGTTGCAGCATCAA+TGG 0.476386 1_3:-11739515 Msa0104230:three_prime_UTR
TTGATTATACAAACCCCTCA+TGG 0.476929 1_3:-11742402 Msa0104230:CDS
TCTCCGCAAGGAGCACTAAC+CGG 0.477734 1_3:-11739530 Msa0104230:three_prime_UTR
CGAATACCCTCGCCCTCTGC+CGG 0.482649 1_3:+11748730 None:intergenic
TCATGTTTCTTGGCTACTCT+AGG 0.483025 1_3:-11748435 Msa0104230:CDS
CAACACTCTCGTGTGATGTC+TGG 0.483836 1_3:+11744406 None:intergenic
AACTCTAAGAAAGCATTTGA+GGG 0.487783 1_3:+11739395 None:intergenic
TAAGAAAGTTTGGAATCAAT+CGG 0.488653 1_3:-11747300 Msa0104230:CDS
ATTCAGTTATTGTCAATTGG+AGG 0.490638 1_3:-11748892 Msa0104230:CDS
AATCAAAACAGTGTCTGGAT+TGG 0.490995 1_3:+11742419 None:intergenic
TTGAATTAGGTCCGTTGTGA+TGG 0.491387 1_3:-11747161 Msa0104230:intron
AGCAGAAAATGGGTCATGTT+CGG 0.491791 1_3:+11742275 None:intergenic
TTTGGTCTTAAGAAATGCAA+TGG 0.492544 1_3:-11748782 Msa0104230:CDS
AATATCGTGGTGAACAAGTA+AGG 0.493471 1_3:-11740628 Msa0104230:CDS
ACCCCTCACTTTATGAGGAA+TGG 0.494119 1_3:+11741723 None:intergenic
TAGTGACCCCTCACTTTATG+AGG 0.495895 1_3:+11741718 None:intergenic
TCTTGGCAATGAGGGCGATC+CGG 0.496571 1_3:+11740047 None:intergenic
TTTGTTACTGTGCTTATCAC+AGG 0.500441 1_3:-11742634 Msa0104230:intron
GGCCGCGACGTCTGCAGGCG+CGG 0.500551 1_3:-11748849 Msa0104230:CDS
GGGAAGGGGAAGAATGGAAC+TGG 0.501539 1_3:-11748761 Msa0104230:CDS
ATACCGCGCCTCCCTTAGAT+CGG 0.503709 1_3:+11740595 None:intergenic
TAACCGGTTGCAGCATCAAT+GGG 0.505207 1_3:-11739514 Msa0104230:three_prime_UTR
TTAAACTTCACTTTGCAAGC+AGG 0.506409 1_3:+11746942 None:intergenic
GATTTACCTGTAAGTGATGA+AGG 0.508309 1_3:+11741484 None:intergenic
GAAAACGAACGAGTGTGCTT+CGG 0.508339 1_3:-11741375 Msa0104230:CDS
TCAATCGGATAGCGGAAGTT+GGG 0.514197 1_3:-11747285 Msa0104230:intron
GCCAAGACTAACGTATCTGC+TGG 0.516278 1_3:-11740031 Msa0104230:CDS
CATGATCTCAAAACCAGCTC+AGG 0.518124 1_3:+11748478 None:intergenic
AATGGAACTGGAAATGGAAC+CGG 0.519586 1_3:-11748749 Msa0104230:CDS
TGATTATACAAACCCCTCAT+GGG 0.519872 1_3:-11742401 Msa0104230:CDS
TGTTCGAGACTTTACATCAT+GGG 0.521144 1_3:-11744449 Msa0104230:CDS
AAAACAGGCACTTAGTGAAT+GGG 0.521307 1_3:-11745818 Msa0104230:CDS
TCACTGGCAAAAGATACTTC+AGG 0.522270 1_3:+11744026 None:intergenic
CAGCTCAGGTGCTTGACTCA+TGG 0.523464 1_3:+11748492 None:intergenic
ATGTTCGAGACTTTACATCA+TGG 0.525400 1_3:-11744450 Msa0104230:CDS
TAAACTTCACTTTGCAAGCA+GGG 0.525413 1_3:+11746943 None:intergenic
TCCAAAATAAGAGAAAAGTT+GGG 0.527543 1_3:-11742356 Msa0104230:CDS
ACAAAATTATCATCTGCGTC+AGG 0.528000 1_3:-11744982 Msa0104230:intron
ACCAGCAGATACGTTAGTCT+TGG 0.528789 1_3:+11740030 None:intergenic
CACTGCTTCAAACCAGAAGA+AGG 0.529246 1_3:-11747914 Msa0104230:intron
TAGATCAGGCATACATGGAT+GGG 0.531402 1_3:-11741352 Msa0104230:CDS
GAAGATATAAATGCGGTGGC+TGG 0.531528 1_3:-11747985 Msa0104230:CDS
CATTTGTGGAAAATGTAGAC+AGG 0.532489 1_3:-11748227 Msa0104230:intron
TTGGTCTTAAGAAATGCAAT+GGG 0.538925 1_3:-11748781 Msa0104230:CDS
AATCTCTGTATAGCATCTAA+AGG 0.539325 1_3:+11741688 None:intergenic
TTCGGTAGATCAGGCATACA+TGG 0.539347 1_3:-11741357 Msa0104230:CDS
CATGAGTCAAGCACCTGAGC+TGG 0.539365 1_3:-11748491 Msa0104230:CDS
ATGAACCTGTTTGTGCTAAG+TGG 0.541212 1_3:-11745054 Msa0104230:CDS
ACTCTAGGAATGATGATCAC+AGG 0.542916 1_3:-11748420 Msa0104230:CDS
TAAAGGATCCATGATATCGC+TGG 0.545747 1_3:-11745746 Msa0104230:CDS
GCACGAAGAACTATTCAAGA+AGG 0.549090 1_3:-11741321 Msa0104230:CDS
ATGGAACCGGCAGAGGGCGA+GGG 0.554352 1_3:-11748736 Msa0104230:CDS
CTCTAGGAATGATGATCACA+GGG 0.557034 1_3:-11748419 Msa0104230:intron
TTTGTAGTAATTGTAAGACT+TGG 0.559531 1_3:-11741974 Msa0104230:CDS
GTATAGCATCTAAAGGATGA+TGG 0.559536 1_3:+11741695 None:intergenic
GTAGATCAGGCATACATGGA+TGG 0.559901 1_3:-11741353 Msa0104230:CDS
GCGCAGCGTTGCCGATCTAA+GGG 0.560666 1_3:-11740606 Msa0104230:CDS
GCTGTTCATCAAGAATGCTA+TGG 0.562015 1_3:-11744481 Msa0104230:CDS
TTAAGAAATGCAATGGGAAG+GGG 0.562330 1_3:-11748775 Msa0104230:CDS
ACAAGTATTGTTTCTCCGCA+AGG 0.565127 1_3:-11739542 Msa0104230:three_prime_UTR
TGGTAAACAGACAACAAGAA+TGG 0.566851 1_3:-11742657 Msa0104230:CDS
TCACATACAATGAGAATGTA+CGG 0.569168 1_3:+11741944 None:intergenic
TTCAAATTCACGAAAGCTCG+TGG 0.572074 1_3:+11748823 None:intergenic
TCCATCAAATTCTTTCGTGA+AGG 0.572136 1_3:-11743967 Msa0104230:intron
ATTTCAAGTGGCAGTTGAGG+AGG 0.575498 1_3:-11748046 Msa0104230:CDS
CTTAAGAAATGCAATGGGAA+GGG 0.578769 1_3:-11748776 Msa0104230:CDS
CAAGTGACATGAACCCATAA+CGG 0.588776 1_3:+11744062 None:intergenic
CTGGAAATGGAACCGGCAGA+GGG 0.590089 1_3:-11748742 Msa0104230:CDS
TCAATTTCAAGTGGCAGTTG+AGG 0.590643 1_3:-11748049 Msa0104230:CDS
ATACTTAAGATACCCAAAGC+AGG 0.595509 1_3:+11743990 None:intergenic
GTTCAAAATTAGTGAAGAGG+TGG 0.595720 1_3:-11740370 Msa0104230:CDS
TTAACAGGTACCTTGCAGAA+AGG 0.596276 1_3:+11745175 None:intergenic
GCTGTTCAAAATTAGTGAAG+AGG 0.597768 1_3:-11740373 Msa0104230:CDS
AGGCGCGGTATAAATTAGAA+AGG 0.600922 1_3:-11740583 Msa0104230:CDS
TACGTTAGTCTTGGCAATGA+GGG 0.600926 1_3:+11740039 None:intergenic
CAGCGTTGCCGATCTAAGGG+AGG 0.601573 1_3:-11740603 Msa0104230:CDS
TTTGGAGCTTTACACAAACA+AGG 0.602627 1_3:+11739606 None:intergenic
AGCCGCGCCTGCAGACGTCG+CGG 0.607626 1_3:+11748847 None:intergenic
ACTTTGCATGGGTGAAGTAT+GGG 0.607771 1_3:-11748260 Msa0104230:CDS
GTATGCCAAATTGCTATGCA+AGG 0.614408 1_3:-11740096 Msa0104230:CDS
GGTTCGTTCTTACAAAGACT+CGG 0.615496 1_3:+11742244 None:intergenic
AGCCATTCCTCATAAAGTGA+GGG 0.615616 1_3:-11741725 Msa0104230:CDS
AGATCAGGCATACATGGATG+GGG 0.615629 1_3:-11741351 Msa0104230:CDS
TAGTTGAAATGACCCCATGA+GGG 0.615961 1_3:+11742388 None:intergenic
TTGGAGCTTTACACAAACAA+GGG 0.615985 1_3:+11739607 None:intergenic
GCCAAGTATCTAAGCAATGT+GGG 0.616617 1_3:+11741998 None:intergenic
AACAGAAGATATAAATGCGG+TGG 0.617214 1_3:-11747989 Msa0104230:CDS
GGCCAAGTATCTAAGCAATG+TGG 0.618975 1_3:+11741997 None:intergenic
GATTATACAAACCCCTCATG+GGG 0.619603 1_3:-11742400 Msa0104230:CDS
TCTTAAGAAATGCAATGGGA+AGG 0.621780 1_3:-11748777 Msa0104230:CDS
TTAGTTGAAATGACCCCATG+AGG 0.622535 1_3:+11742387 None:intergenic
TGTTCGGTGTTATCTTCTGG+AGG 0.623285 1_3:+11742291 None:intergenic
AGATACTTCAGGTCGAAACC+AGG 0.625946 1_3:+11744037 None:intergenic
AAATTGCTTACCTTTCTGCA+AGG 0.627499 1_3:-11745185 Msa0104230:intron
ATACGTTAGTCTTGGCAATG+AGG 0.628532 1_3:+11740038 None:intergenic
GTGTGGGTCATGATGAGAGC+CGG 0.632839 1_3:-11740066 Msa0104230:CDS
AAGCCATTCCTCATAAAGTG+AGG 0.633064 1_3:-11741726 Msa0104230:CDS
AGTTGAAATGACCCCATGAG+GGG 0.639618 1_3:+11742389 None:intergenic
AGTGAATGGGAACGTCACAC+AGG 0.639816 1_3:-11745805 Msa0104230:CDS
CATAACGGATCGATATCAGT+AGG 0.639930 1_3:+11744077 None:intergenic
AAGTCTTACAATTACTACAA+AGG 0.640038 1_3:+11741976 None:intergenic
GTCTTCAGGTTATGCCGTCG+CGG 0.640114 1_3:-11748922 None:intergenic
ATATAGGAAAATAATAGCTG+TGG 0.640645 1_3:-11739435 Msa0104230:three_prime_UTR
ACTGCCACTTGAAATTGAGA+CGG 0.645397 1_3:+11748054 None:intergenic
GTTTGGAATCAATCGGATAG+CGG 0.648105 1_3:-11747293 Msa0104230:CDS
TTACAGCTTGTGTATAACTG+AGG 0.651017 1_3:+11739489 None:intergenic
GTTGTGAACAGGACTTTGCA+TGG 0.655298 1_3:-11748272 Msa0104230:intron
TGATCCGTCTCAATTTCAAG+TGG 0.656177 1_3:-11748058 Msa0104230:CDS
ACTGAATCATTAAACCGCGA+CGG 0.657972 1_3:+11748908 None:intergenic
GCCATTCCTCATAAAGTGAG+GGG 0.662108 1_3:-11741724 Msa0104230:CDS
ACGATGTGCTGTATGTAGAT+GGG 0.662827 1_3:-11745023 Msa0104230:CDS
GTTGTGATGGATGTAAAGTG+TGG 0.663990 1_3:-11747148 Msa0104230:CDS
AGGGTATTCGGAATTGTGTG+AGG 0.664127 1_3:-11748717 Msa0104230:CDS
TTGTGAACAGGACTTTGCAT+GGG 0.666991 1_3:-11748271 Msa0104230:intron
ATGCAGGTCCTTGAATATCG+TGG 0.667657 1_3:-11740641 Msa0104230:intron
TTGCCGATCTAAGGGAGGCG+CGG 0.671455 1_3:-11740598 Msa0104230:CDS
GTATTCGGAATTGTGTGAGG+AGG 0.677078 1_3:-11748714 Msa0104230:CDS
CTGATAAAGGAAATATTGCG+CGG 0.678009 1_3:-11740335 Msa0104230:CDS
CAACCGGTTAGTGCTCCTTG+CGG 0.678033 1_3:+11739527 None:intergenic
TTGTGATGGATGTAAAGTGT+GGG 0.678425 1_3:-11747147 Msa0104230:CDS
ACGAAATCGAAACATTATTG+CGG 0.687231 1_3:-11747329 Msa0104230:CDS
CTATGCAAGGATCATGAGTG+TGG 0.696386 1_3:-11740083 Msa0104230:CDS
GTTAACAGAAGATATAAATG+CGG 0.698123 1_3:-11747992 Msa0104230:CDS
TACAATGAGAATGTACGGCG+AGG 0.719402 1_3:+11741949 None:intergenic
ACACTTTACATCCATCACAA+CGG 0.723460 1_3:+11747150 None:intergenic
TATGCAAGGATCATGAGTGT+GGG 0.735724 1_3:-11740082 Msa0104230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTGTATTTTTAATATAA+TGG - chr1_3:11739857-11739876 Msa0104230:intron 10.0%
!! ATATGTTATTCTTAAAAAAT+GGG + chr1_3:11741399-11741418 None:intergenic 10.0%
!! AATATGTTATTCTTAAAAAA+TGG + chr1_3:11741400-11741419 None:intergenic 10.0%
!!! AAAAAGTATTTATATGTAAA+TGG + chr1_3:11743556-11743575 None:intergenic 10.0%
!!! ATTTTACTAAAATATAGTAA+TGG - chr1_3:11744355-11744374 Msa0104230:intron 10.0%
!! TTAAATTAAATGAAAGTAAA+TGG + chr1_3:11744745-11744764 None:intergenic 10.0%
!! ATAAAATTAGACATAAATTA+TGG - chr1_3:11747406-11747425 Msa0104230:intron 10.0%
!!! TTTTGTTAATTTCAATTTTA+GGG + chr1_3:11748258-11748277 None:intergenic 10.0%
!!! ATTTTGTTAATTTCAATTTT+AGG + chr1_3:11748259-11748278 None:intergenic 10.0%
!! AAGAATAAGAAAAAAAATAT+AGG - chr1_3:11748730-11748749 Msa0104230:CDS 10.0%
!!! TTTGAAAAATTTGAAGATTT+TGG - chr1_3:11739381-11739400 Msa0104230:three_prime_UTR 15.0%
!! ATTACTTTATATTATGCATA+TGG - chr1_3:11739823-11739842 Msa0104230:intron 15.0%
!! TTGTATTTATAGGATATTTA+AGG - chr1_3:11740361-11740380 Msa0104230:CDS 15.0%
!! TATAAATTGTTAGAAGAAAA+AGG + chr1_3:11740737-11740756 None:intergenic 15.0%
!! TAAGAATAACATATTTCTTT+AGG - chr1_3:11741405-11741424 Msa0104230:intron 15.0%
!! ATTAATTACATAGAATTAGT+TGG - chr1_3:11741686-11741705 Msa0104230:CDS 15.0%
!! TTTAATTACCAATCTAAAAA+AGG + chr1_3:11741752-11741771 None:intergenic 15.0%
!! AACATAAATAAGATGTTTAT+AGG + chr1_3:11742019-11742038 None:intergenic 15.0%
!! TTGTATTTATATATACCAAT+CGG - chr1_3:11742611-11742630 Msa0104230:intron 15.0%
!!! ATCTACTTTTTTTTTTCTAT+GGG + chr1_3:11742811-11742830 None:intergenic 15.0%
!!! AATCTACTTTTTTTTTTCTA+TGG + chr1_3:11742812-11742831 None:intergenic 15.0%
!! ATAGAAAAAAAAAAGTAGAT+TGG - chr1_3:11742811-11742830 Msa0104230:intron 15.0%
!! TATTTGACATCTAAAAAATA+TGG + chr1_3:11743680-11743699 None:intergenic 15.0%
!!! CATTTAATTTAATTTGATAC+AGG - chr1_3:11744753-11744772 Msa0104230:intron 15.0%
!!! ATTAATTTGTTAACAAGTTT+TGG - chr1_3:11745127-11745146 Msa0104230:intron 15.0%
!!! GATAATTTTCATTTATCATA+TGG - chr1_3:11745430-11745449 Msa0104230:intron 15.0%
!!! TGTTATTTATTTGATACTTT+TGG - chr1_3:11746080-11746099 Msa0104230:intron 15.0%
!! ATCAAATATTTATCAACATT+TGG - chr1_3:11747050-11747069 Msa0104230:intron 15.0%
!! TTATGTTTAATCATATTCTT+GGG - chr1_3:11747119-11747138 Msa0104230:CDS 15.0%
!!! ATGAAAATTAAACTTTTATC+AGG + chr1_3:11747197-11747216 None:intergenic 15.0%
!! TTAAATTAACCAAATCTAAA+AGG + chr1_3:11748321-11748340 None:intergenic 15.0%
!! ATAAATCTATACAATGTAAT+AGG + chr1_3:11748835-11748854 None:intergenic 15.0%
!!! TTTGTGTGATTTTTGATTAA+TGG - chr1_3:11739887-11739906 Msa0104230:intron 20.0%
!!! GAATGATGTTATTTTGTATT+AGG - chr1_3:11740071-11740090 Msa0104230:CDS 20.0%
!!! TTCATGACATATTTTCTTTT+GGG - chr1_3:11740299-11740318 Msa0104230:intron 20.0%
!!! TTGATTTGAATTTCATATGT+AGG - chr1_3:11740570-11740589 Msa0104230:intron 20.0%
!!! GATCATAAACTTTATTTTTG+CGG - chr1_3:11740965-11740984 Msa0104230:intron 20.0%
!!! CTATAAACTTACTTGATTTT+TGG + chr1_3:11741296-11741315 None:intergenic 20.0%
!!! GATAAATACCTTTTTTAGAT+TGG - chr1_3:11741741-11741760 Msa0104230:CDS 20.0%
!!! AGCTTTTTTTATAATCCTAT+TGG - chr1_3:11742043-11742062 Msa0104230:intron 20.0%
!! TGTTTGATACTAATTTCATA+TGG - chr1_3:11742216-11742235 Msa0104230:intron 20.0%
!! ATAACTAGTTAATGAAGAAA+TGG + chr1_3:11742265-11742284 None:intergenic 20.0%
!! TTCATTAACTAGTTATGATA+TGG - chr1_3:11742269-11742288 Msa0104230:CDS 20.0%
!!! AAATAAGTAGTGAAGTTTTA+GGG + chr1_3:11742524-11742543 None:intergenic 20.0%
!!! TAAATAAGTAGTGAAGTTTT+AGG + chr1_3:11742525-11742544 None:intergenic 20.0%
!! TGTATTTATATATACCAATC+GGG - chr1_3:11742612-11742631 Msa0104230:intron 20.0%
!! ATATCAAATATCAATGTTGA+TGG + chr1_3:11742698-11742717 None:intergenic 20.0%
!!! TTTATGTTTTCTTTCTTTTG+AGG + chr1_3:11742979-11742998 None:intergenic 20.0%
!! ATTAATTTATGTATGTGTCT+TGG - chr1_3:11743359-11743378 Msa0104230:intron 20.0%
!! AAATACTTAATACCAAATAC+TGG + chr1_3:11743409-11743428 None:intergenic 20.0%
!!! TATGTTTTTCATTACATGTA+TGG - chr1_3:11743451-11743470 Msa0104230:intron 20.0%
!!! TTTTATCTGAAATGTATTGT+TGG - chr1_3:11744059-11744078 Msa0104230:CDS 20.0%
!! ATCAGTAAAAATTATGCAAA+TGG + chr1_3:11744717-11744736 None:intergenic 20.0%
!! AGGGCAATATTAATTAAAAA+TGG + chr1_3:11744786-11744805 None:intergenic 20.0%
!!! ATTTTTAATTAATATTGCCC+TGG - chr1_3:11744785-11744804 Msa0104230:intron 20.0%
!!! TGAAATTTTAATGGACTAAT+GGG + chr1_3:11744971-11744990 None:intergenic 20.0%
!!! TTGAAATTTTAATGGACTAA+TGG + chr1_3:11744972-11744991 None:intergenic 20.0%
!!! TTTGCTGATTGAAATTTTAA+TGG + chr1_3:11744980-11744999 None:intergenic 20.0%
!!! GAAAAATTGTTACTTAAGTT+AGG - chr1_3:11745044-11745063 Msa0104230:CDS 20.0%
!!! ATTTGCAAATAATTTTGTAG+AGG - chr1_3:11745279-11745298 Msa0104230:intron 20.0%
!! TTCATTATTATTCTGTATCA+TGG - chr1_3:11745394-11745413 Msa0104230:intron 20.0%
!! CATTTATCATATGGATAATT+AGG - chr1_3:11745439-11745458 Msa0104230:intron 20.0%
!! AAAGTCAATTAACAATTTCA+TGG + chr1_3:11745466-11745485 None:intergenic 20.0%
!! AAACAATATTGACATAATTG+AGG + chr1_3:11745581-11745600 None:intergenic 20.0%
!! GAAACAATATAAAGAAAGAA+AGG + chr1_3:11745606-11745625 None:intergenic 20.0%
!! TCTTTATATTGTTTCCTTTA+CGG - chr1_3:11745611-11745630 Msa0104230:intron 20.0%
!!! AAAAAATGCTTATGTGTTTT+TGG - chr1_3:11745652-11745671 Msa0104230:intron 20.0%
!!! TTATCATTATGTTTTGTACT+TGG - chr1_3:11746416-11746435 Msa0104230:intron 20.0%
!!! ATCTTTTACTCTGATATAAA+TGG - chr1_3:11746533-11746552 Msa0104230:intron 20.0%
!!! TCTTTTACTCTGATATAAAT+GGG - chr1_3:11746534-11746553 Msa0104230:intron 20.0%
!! TGTCAATTATTATTGACATA+AGG - chr1_3:11747005-11747024 Msa0104230:intron 20.0%
!! GTTATGTTTAATCATATTCT+TGG - chr1_3:11747118-11747137 Msa0104230:CDS 20.0%
!! AAAAAGAGAAAATATACAGA+GGG + chr1_3:11747226-11747245 None:intergenic 20.0%
!! ATTATCACATTAAATTCTTC+TGG - chr1_3:11747770-11747789 Msa0104230:intron 20.0%
!! TGTATTAACATAAATCAAGA+AGG + chr1_3:11748063-11748082 None:intergenic 20.0%
!!! ATCAAGAATTTTCAATATCA+GGG - chr1_3:11748378-11748397 Msa0104230:intron 20.0%
! ATGATTCAGTTATTGTCAAT+TGG - chr1_3:11739286-11739305 Msa0104230:three_prime_UTR 25.0%
!!! TGAGATTTTTGAAGAAACAA+AGG - chr1_3:11739542-11739561 Msa0104230:three_prime_UTR 25.0%
!!! AGTTTTGAAGAAGAAAAGAA+GGG - chr1_3:11739575-11739594 Msa0104230:exon 25.0%
! CTTTATATTATGCATATGGT+AGG - chr1_3:11739827-11739846 Msa0104230:intron 25.0%
!!! TGTTGTTTAGATTTTGTTTC+TGG - chr1_3:11740021-11740040 Msa0104230:CDS 25.0%
!!! GTTGTTTAGATTTTGTTTCT+GGG - chr1_3:11740022-11740041 Msa0104230:CDS 25.0%
! GTTAACAGAAGATATAAATG+CGG - chr1_3:11740189-11740208 Msa0104230:intron 25.0%
!! CTTCATGACATATTTTCTTT+TGG - chr1_3:11740298-11740317 Msa0104230:intron 25.0%
! TTGTTCTGCATTGTATTTAT+AGG - chr1_3:11740351-11740370 Msa0104230:CDS 25.0%
! TTCAGTTACAAATTGAAGTT+TGG + chr1_3:11740402-11740421 None:intergenic 25.0%
! GTCAAATCTACAAGTTTAAA+GGG + chr1_3:11740447-11740466 None:intergenic 25.0%
! TGTCAAATCTACAAGTTTAA+AGG + chr1_3:11740448-11740467 None:intergenic 25.0%
!! GTTTTCTTTGACATATTGAA+AGG + chr1_3:11740651-11740670 None:intergenic 25.0%
! CAATATGTCAAAGAAAACAA+AGG - chr1_3:11740653-11740672 Msa0104230:intron 25.0%
!! ATTTATATTTCTGCCTGAAA+TGG - chr1_3:11740750-11740769 Msa0104230:intron 25.0%
!! TAAGAAAGTTTGGAATCAAT+CGG - chr1_3:11740881-11740900 Msa0104230:intron 25.0%
!!! GTAATGGATAAACCTTAAAA+AGG + chr1_3:11741091-11741110 None:intergenic 25.0%
! AATTATGTAAACACTTCTGA+AGG + chr1_3:11741611-11741630 None:intergenic 25.0%
!!! TGGTTTGTTTCAAAAATATG+CGG - chr1_3:11741706-11741725 Msa0104230:CDS 25.0%
! ATTGTGTTCTTCTCTTAAAA+AGG - chr1_3:11741802-11741821 Msa0104230:intron 25.0%
! TTGTGTTCTTCTCTTAAAAA+GGG - chr1_3:11741803-11741822 Msa0104230:intron 25.0%
! TTACTAAAATGAAAACCAGA+TGG - chr1_3:11741862-11741881 Msa0104230:intron 25.0%
! TACTAAAATGAAAACCAGAT+GGG - chr1_3:11741863-11741882 Msa0104230:intron 25.0%
!! ATTGATTTAAGCTATCGAAA+TGG - chr1_3:11741975-11741994 Msa0104230:CDS 25.0%
!! TTTCTTTTGTGTGTTTGATT+TGG - chr1_3:11742127-11742146 Msa0104230:intron 25.0%
! ATTAACTAGTTATGATATGG+AGG - chr1_3:11742272-11742291 Msa0104230:CDS 25.0%
!! TGTTTTCCAGTTTCTAAATT+TGG + chr1_3:11742404-11742423 None:intergenic 25.0%
!! AAAACAAGTATTCAGGTTAA+AGG - chr1_3:11742418-11742437 Msa0104230:CDS 25.0%
! CTATTAGTACATCAAATGAT+TGG + chr1_3:11742584-11742603 None:intergenic 25.0%
! CAATCATTTGATGTACTAAT+AGG - chr1_3:11742582-11742601 Msa0104230:intron 25.0%
! GTATTTATATATACCAATCG+GGG - chr1_3:11742613-11742632 Msa0104230:intron 25.0%
! GATATTTGATATGCATTATG+AGG - chr1_3:11742706-11742725 Msa0104230:intron 25.0%
! AAAAGTAGATTGGATATGTA+TGG - chr1_3:11742821-11742840 Msa0104230:intron 25.0%
! AAAGTAGATTGGATATGTAT+GGG - chr1_3:11742822-11742841 Msa0104230:intron 25.0%
! ATTGTACAATTGCACAAAAA+AGG + chr1_3:11743038-11743057 None:intergenic 25.0%
! TATGACTGAGAAATTTATCT+AGG + chr1_3:11743072-11743091 None:intergenic 25.0%
! GATAAATTTCTCAGTCATAA+TGG - chr1_3:11743073-11743092 Msa0104230:intron 25.0%
! ATATTTAAACCGTGAAAACT+AGG - chr1_3:11743249-11743268 Msa0104230:intron 25.0%
! TATTTAAACCGTGAAAACTA+GGG - chr1_3:11743250-11743269 Msa0104230:intron 25.0%
! GTAGTGATTTCATGAATATT+TGG - chr1_3:11743321-11743340 Msa0104230:intron 25.0%
! GTAATGAAAAACATAAGACA+GGG + chr1_3:11743446-11743465 None:intergenic 25.0%
! TGTAATGAAAAACATAAGAC+AGG + chr1_3:11743447-11743466 None:intergenic 25.0%
!! TTTTCTTACTCTATGATGAA+TGG - chr1_3:11743627-11743646 Msa0104230:intron 25.0%
! TGACTAACATTAATTAGGAA+TGG + chr1_3:11744384-11744403 None:intergenic 25.0%
! AATCATATTTGCATAAACCA+GGG + chr1_3:11744805-11744824 None:intergenic 25.0%
! AAATCATATTTGCATAAACC+AGG + chr1_3:11744806-11744825 None:intergenic 25.0%
!! GTAATGAGTGTAAACTTTTA+AGG + chr1_3:11744948-11744967 None:intergenic 25.0%
!!! GAAATTTTAATGGACTAATG+GGG + chr1_3:11744970-11744989 None:intergenic 25.0%
! AGCTTAAATGTCATCATATT+TGG - chr1_3:11745076-11745095 Msa0104230:intron 25.0%
! TGTTAACAAATTAATTCCTC+AGG + chr1_3:11745122-11745141 None:intergenic 25.0%
! CATCAGATTCCATATTTAAA+TGG + chr1_3:11745345-11745364 None:intergenic 25.0%
! CATTTAAATATGGAATCTGA+TGG - chr1_3:11745343-11745362 Msa0104230:intron 25.0%
! TTATTATTCTGTATCATGGA+TGG - chr1_3:11745398-11745417 Msa0104230:intron 25.0%
!!! TATGTGTTTTTGGAATTGTA+TGG - chr1_3:11745662-11745681 Msa0104230:intron 25.0%
!!! ATGTGTTTTTGGAATTGTAT+GGG - chr1_3:11745663-11745682 Msa0104230:intron 25.0%
! ATGATTTCTATATTTCTTGC+AGG - chr1_3:11745735-11745754 Msa0104230:intron 25.0%
! TGATTTCTATATTTCTTGCA+GGG - chr1_3:11745736-11745755 Msa0104230:intron 25.0%
!!! CTTTTCTCTTATTTTGGATA+AGG + chr1_3:11745823-11745842 None:intergenic 25.0%
! ATCCAAAATAAGAGAAAAGT+TGG - chr1_3:11745824-11745843 Msa0104230:CDS 25.0%
! TCCAAAATAAGAGAAAAGTT+GGG - chr1_3:11745825-11745844 Msa0104230:CDS 25.0%
! ATTGATTATCTACAAAGACT+CGG + chr1_3:11746049-11746068 None:intergenic 25.0%
! AAGTCTTACAATTACTACAA+AGG + chr1_3:11746208-11746227 None:intergenic 25.0%
! TTTGTAGTAATTGTAAGACT+TGG - chr1_3:11746207-11746226 Msa0104230:intron 25.0%
! TCAGAGTAAAAGATTTACTT+TGG + chr1_3:11746527-11746546 None:intergenic 25.0%
! AGCAAAAGAATGAAAATAAG+GGG + chr1_3:11746616-11746635 None:intergenic 25.0%
! GAGCAAAAGAATGAAAATAA+GGG + chr1_3:11746617-11746636 None:intergenic 25.0%
! TGAGCAAAAGAATGAAAATA+AGG + chr1_3:11746618-11746637 None:intergenic 25.0%
!! TCAGACATTTTCATCTTTTA+GGG - chr1_3:11746670-11746689 Msa0104230:intron 25.0%
!! TAAATCTTCTTTTTCTTCAG+TGG - chr1_3:11746714-11746733 Msa0104230:intron 25.0%
!!! TGAAAAAACAAGCTTTAAAG+AGG + chr1_3:11746979-11746998 None:intergenic 25.0%
!!! CTTTAAAGCTTGTTTTTTCA+AGG - chr1_3:11746979-11746998 Msa0104230:intron 25.0%
! CAAAAAGAGAAAATATACAG+AGG + chr1_3:11747227-11747246 None:intergenic 25.0%
!! TTATGTCTAATTTTATCGCA+AGG + chr1_3:11747402-11747421 None:intergenic 25.0%
!! AGGATAATGATGTTATGTTT+TGG + chr1_3:11747444-11747463 None:intergenic 25.0%
!! TAAAAGTTCTACTGATTAGA+CGG + chr1_3:11747490-11747509 None:intergenic 25.0%
! GTACTAAAACGACTAAATAT+AGG + chr1_3:11748001-11748020 None:intergenic 25.0%
!! TAGTACATATTACTGGTTAA+TGG - chr1_3:11748015-11748034 Msa0104230:CDS 25.0%
!! TACAACATTCCTTTTAGATT+TGG - chr1_3:11748309-11748328 Msa0104230:intron 25.0%
!! GATCAAGAATTTTCAATATC+AGG - chr1_3:11748377-11748396 Msa0104230:intron 25.0%
! CATTAATTTCAGTGAACAAA+TGG - chr1_3:11748416-11748435 Msa0104230:intron 25.0%
! TACAATTTCAAAGACTAAGT+TGG - chr1_3:11748448-11748467 Msa0104230:CDS 25.0%
! ATATAGGAAAATAATAGCTG+TGG - chr1_3:11748746-11748765 Msa0104230:CDS 25.0%
!! ATAGATTTATTAGCAGCTTT+TGG - chr1_3:11748845-11748864 Msa0104230:CDS 25.0%
ATTCAGTTATTGTCAATTGG+AGG - chr1_3:11739289-11739308 Msa0104230:three_prime_UTR 30.0%
GAAAGATGGTAAAAACAATG+CGG - chr1_3:11739311-11739330 Msa0104230:three_prime_UTR 30.0%
!! TTTGGTCTTAAGAAATGCAA+TGG - chr1_3:11739399-11739418 Msa0104230:three_prime_UTR 30.0%
!! TTGGTCTTAAGAAATGCAAT+GGG - chr1_3:11739400-11739419 Msa0104230:three_prime_UTR 30.0%
!!! GAGTTTTGAAGAAGAAAAGA+AGG - chr1_3:11739574-11739593 Msa0104230:exon 30.0%
!!! AGAAGAAAAGAAGGGTTTTT+TGG - chr1_3:11739583-11739602 Msa0104230:exon 30.0%
TTTGATTAATGGTTGTGAAC+AGG - chr1_3:11739898-11739917 Msa0104230:intron 30.0%
!!! TTCTGTATTTTGGTGTAGTA+TGG + chr1_3:11740505-11740524 None:intergenic 30.0%
ATTTGACAGAAAGAAAAACG+TGG - chr1_3:11740597-11740616 Msa0104230:CDS 30.0%
TTTGACAGAAAGAAAAACGT+GGG - chr1_3:11740598-11740617 Msa0104230:CDS 30.0%
TCTTTGACATATTGAAAGGA+AGG + chr1_3:11740647-11740666 None:intergenic 30.0%
CAATTATACGTTTCCATTTC+AGG + chr1_3:11740766-11740785 None:intergenic 30.0%
ACGAAATCGAAACATTATTG+CGG - chr1_3:11740852-11740871 Msa0104230:intron 30.0%
ATAAACCTTAAAAAGGATGC+TGG + chr1_3:11741084-11741103 None:intergenic 30.0%
CAATTAGACATCAAGTATGA+CGG + chr1_3:11741115-11741134 None:intergenic 30.0%
! ATCTGTTTCTTGTAGAATCT+TGG - chr1_3:11741197-11741216 Msa0104230:intron 30.0%
ACTAAGTTAGGCTACAAATA+GGG + chr1_3:11741346-11741365 None:intergenic 30.0%
TACTAAGTTAGGCTACAAAT+AGG + chr1_3:11741347-11741366 None:intergenic 30.0%
TTACATGGGATTACTAAGTT+AGG + chr1_3:11741358-11741377 None:intergenic 30.0%
GCTTCATATGTATGTTACAT+GGG + chr1_3:11741372-11741391 None:intergenic 30.0%
AGCTTCATATGTATGTTACA+TGG + chr1_3:11741373-11741392 None:intergenic 30.0%
! GTTTCTATTGTTGACTAAAG+TGG - chr1_3:11741464-11741483 Msa0104230:intron 30.0%
TATAGATGGAGCAAATACAA+TGG - chr1_3:11741497-11741516 Msa0104230:CDS 30.0%
ATAGATGGAGCAAATACAAT+GGG - chr1_3:11741498-11741517 Msa0104230:CDS 30.0%
AACACAATCAAATAGCATTG+TGG + chr1_3:11741790-11741809 None:intergenic 30.0%
! ACTTGTTAAAAATTCCCATC+TGG + chr1_3:11741880-11741899 None:intergenic 30.0%
ATGTTTATAGGCATAGTTTG+AGG + chr1_3:11742007-11742026 None:intergenic 30.0%
! ATAGCTATTGTTGTTCCAAT+AGG + chr1_3:11742061-11742080 None:intergenic 30.0%
CAATAGCTATATGATGAACA+TGG - chr1_3:11742071-11742090 Msa0104230:intron 30.0%
!! TTGTGTGTTTGATTTGGTAT+TGG - chr1_3:11742133-11742152 Msa0104230:intron 30.0%
! AGTATCAAACAGTTTAGAAC+AGG + chr1_3:11742207-11742226 None:intergenic 30.0%
AAACTGGAAAACAAGTATTC+AGG - chr1_3:11742411-11742430 Msa0104230:CDS 30.0%
TTATCATTATTTACCCCGAT+TGG + chr1_3:11742629-11742648 None:intergenic 30.0%
! AAGTCTCATGATTTAGCTTA+TGG - chr1_3:11742783-11742802 Msa0104230:intron 30.0%
AAGTAGATTGGATATGTATG+GGG - chr1_3:11742823-11742842 Msa0104230:intron 30.0%
!! TGTTTTCTTTCTTTTGAGGA+TGG + chr1_3:11742975-11742994 None:intergenic 30.0%
CAAAAAAGGAAAGACTTAAC+AGG + chr1_3:11743024-11743043 None:intergenic 30.0%
TTTCTCAGTCATAATGGTAA+TGG - chr1_3:11743079-11743098 Msa0104230:intron 30.0%
!! TTTCTAATCCCTAGTTTTCA+CGG + chr1_3:11743261-11743280 None:intergenic 30.0%
ATTAGAAAAAGTTTCTGCTG+AGG - chr1_3:11743273-11743292 Msa0104230:intron 30.0%
TACTTAATACCAAATACTGG+AGG + chr1_3:11743406-11743425 None:intergenic 30.0%
!!! TGGTAATCTGTTATTTTGCA+TGG - chr1_3:11743471-11743490 Msa0104230:intron 30.0%
TCCAAACAATAGAATGCAAA+GGG + chr1_3:11743893-11743912 None:intergenic 30.0%
TTCCAAACAATAGAATGCAA+AGG + chr1_3:11743894-11743913 None:intergenic 30.0%
CAAGGTTAAAAGAATCTAGA+GGG + chr1_3:11743921-11743940 None:intergenic 30.0%
GATTTGTAAATGCATATGCA+AGG + chr1_3:11743939-11743958 None:intergenic 30.0%
! AACCATACTTCTTTTGCAAA+GGG + chr1_3:11744308-11744327 None:intergenic 30.0%
! AAACCATACTTCTTTTGCAA+AGG + chr1_3:11744309-11744328 None:intergenic 30.0%
ACTGGTGACTAACATTAATT+AGG + chr1_3:11744389-11744408 None:intergenic 30.0%
AAAGAATAAACTACAGCAAC+TGG + chr1_3:11744407-11744426 None:intergenic 30.0%
! CACTCTTCAGCTTTATAATA+TGG + chr1_3:11744447-11744466 None:intergenic 30.0%
CTAGGTTGTTCATTGTAAAA+AGG + chr1_3:11744473-11744492 None:intergenic 30.0%
! CTTTTTACAATGAACAACCT+AGG - chr1_3:11744471-11744490 Msa0104230:CDS 30.0%
GATACAGATGTTAAGAAATC+TGG + chr1_3:11744504-11744523 None:intergenic 30.0%
GTTATTTGTAAGCAAATCCA+TGG - chr1_3:11744587-11744606 Msa0104230:intron 30.0%
ACTTCATCAATCAGATCAAA+AGG - chr1_3:11744884-11744903 Msa0104230:intron 30.0%
ATGCTGTAAGAAGAAAAACA+AGG - chr1_3:11744915-11744934 Msa0104230:intron 30.0%
ATGACATTTAAGCTAAGTGA+TGG + chr1_3:11745070-11745089 None:intergenic 30.0%
! AGTTTGACCAACATTTTTCT+AGG - chr1_3:11745173-11745192 Msa0104230:intron 30.0%
! GTTTGACCAACATTTTTCTA+GGG - chr1_3:11745174-11745193 Msa0104230:intron 30.0%
CTTTGTGACAAATGTAAACT+TGG - chr1_3:11745201-11745220 Msa0104230:CDS 30.0%
TTTGCAAATAACCTGTATAG+TGG + chr1_3:11745268-11745287 None:intergenic 30.0%
! TGCAAATAATTTTGTAGAGG+TGG - chr1_3:11745282-11745301 Msa0104230:intron 30.0%
!! CTTGAAGTGCCATTTAAATA+TGG - chr1_3:11745333-11745352 Msa0104230:intron 30.0%
GTAAATACAGTTGCATAGTT+CGG - chr1_3:11745494-11745513 Msa0104230:intron 30.0%
TTGCATAGTTCGGAAAAAAA+TGG - chr1_3:11745504-11745523 Msa0104230:intron 30.0%
GTAAAAAGTAAACTCCGTAA+AGG + chr1_3:11745628-11745647 None:intergenic 30.0%
TGTATAATCAAAACAGTGTC+TGG + chr1_3:11745770-11745789 None:intergenic 30.0%
!! ACCCAACTTTTCTCTTATTT+TGG + chr1_3:11745829-11745848 None:intergenic 30.0%
AATTTCGTCGAACAGAATAA+AGG - chr1_3:11745856-11745875 Msa0104230:intron 30.0%
CAATTGTTCTTCTTGATGAA+TGG - chr1_3:11746020-11746039 Msa0104230:intron 30.0%
TCACATACAATGAGAATGTA+CGG + chr1_3:11746240-11746259 None:intergenic 30.0%
TGTATGTGATTGTGATGTAA+TGG - chr1_3:11746251-11746270 Msa0104230:intron 30.0%
AATCTCTGTATAGCATCTAA+AGG + chr1_3:11746496-11746515 None:intergenic 30.0%
GCAAAAGAATGAAAATAAGG+GGG + chr1_3:11746615-11746634 None:intergenic 30.0%
! CTCAGACATTTTCATCTTTT+AGG - chr1_3:11746669-11746688 Msa0104230:intron 30.0%
! TCGATTTTCTGATTGGATTT+TGG - chr1_3:11746757-11746776 Msa0104230:intron 30.0%
! CGATTTTCTGATTGGATTTT+GGG - chr1_3:11746758-11746777 Msa0104230:intron 30.0%
AACTATTCAAGAAGGAGAAA+TGG - chr1_3:11746868-11746887 Msa0104230:intron 30.0%
! TTAAACTTTTATCAGGCTCT+AGG + chr1_3:11747190-11747209 None:intergenic 30.0%
! AGTATGATTTTATCCAATGC+AGG - chr1_3:11747524-11747543 Msa0104230:intron 30.0%
AGGATGAAATCATCAGAAAA+GGG + chr1_3:11747651-11747670 None:intergenic 30.0%
AAAATAAAGTCAAGGACAAG+AGG + chr1_3:11747671-11747690 None:intergenic 30.0%
AGTGGACAAAAATAAAGTCA+AGG + chr1_3:11747679-11747698 None:intergenic 30.0%
!!! GACTTTATTTTTGTCCACTT+TGG - chr1_3:11747680-11747699 Msa0104230:intron 30.0%
AAAATCAGCAGAAAAACAGA+GGG + chr1_3:11747727-11747746 None:intergenic 30.0%
AAAAATCAGCAGAAAAACAG+AGG + chr1_3:11747728-11747747 None:intergenic 30.0%
!!! ATTCTTCTGGCTTCTTTTTT+TGG - chr1_3:11747783-11747802 Msa0104230:intron 30.0%
!! GTCGTTTTAGTACATATTAC+TGG - chr1_3:11748008-11748027 Msa0104230:CDS 30.0%
! ATACAGGAAAAAGCATAGAT+GGG + chr1_3:11748196-11748215 None:intergenic 30.0%
! TATCATTTCACCATGCATTT+TGG - chr1_3:11748213-11748232 Msa0104230:intron 30.0%
ATCAAATTATTGTACCTGAC+AGG - chr1_3:11748507-11748526 Msa0104230:CDS 30.0%
! TTCATGAATTTTCTGCAGTT+TGG + chr1_3:11748596-11748615 None:intergenic 30.0%
CTGCAGAAAATTCATGAATT+AGG - chr1_3:11748598-11748617 Msa0104230:intron 30.0%
!! AACTCTAAGAAAGCATTTGA+GGG + chr1_3:11748789-11748808 None:intergenic 30.0%
!! AAACTCTAAGAAAGCATTTG+AGG + chr1_3:11748790-11748809 None:intergenic 30.0%
ATTGTCAATTGGAGGAAAGA+TGG - chr1_3:11739297-11739316 Msa0104230:three_prime_UTR 35.0%
TCTTAAGAAATGCAATGGGA+AGG - chr1_3:11739404-11739423 Msa0104230:three_prime_UTR 35.0%
CTTAAGAAATGCAATGGGAA+GGG - chr1_3:11739405-11739424 Msa0104230:three_prime_UTR 35.0%
TTAAGAAATGCAATGGGAAG+GGG - chr1_3:11739406-11739425 Msa0104230:three_prime_UTR 35.0%
!!! GAGGTGTTGCATAAGAATTT+TGG - chr1_3:11739486-11739505 Msa0104230:three_prime_UTR 35.0%
GAAGAAACAAAGGTGAGTAA+TGG - chr1_3:11739552-11739571 Msa0104230:three_prime_UTR 35.0%
! TTTTGGACCAGAAGATTTTG+TGG - chr1_3:11739600-11739619 Msa0104230:CDS 35.0%
! CTAGGAAAAAGGAACCATTT+TGG - chr1_3:11739647-11739666 Msa0104230:CDS 35.0%
! TGGGATGATTTTTCCATTTG+TGG - chr1_3:11739940-11739959 Msa0104230:intron 35.0%
! CTGTCTACATTTTCCACAAA+TGG + chr1_3:11739956-11739975 None:intergenic 35.0%
CATTTGTGGAAAATGTAGAC+AGG - chr1_3:11739954-11739973 Msa0104230:intron 35.0%
TTTGCGTGTTTGCTTATACT+AGG - chr1_3:11740049-11740068 Msa0104230:CDS 35.0%
AACAGAAGATATAAATGCGG+TGG - chr1_3:11740192-11740211 Msa0104230:intron 35.0%
!!! ATTTTCTTTTGGGTTCTGCA+TGG - chr1_3:11740309-11740328 Msa0104230:intron 35.0%
AAATTGACATAGTCACTGCT+TGG - chr1_3:11740421-11740440 Msa0104230:intron 35.0%
! GCTACATCACTTCTGTATTT+TGG + chr1_3:11740515-11740534 None:intergenic 35.0%
CAATTTGTCAATATGTCACC+AGG + chr1_3:11740537-11740556 None:intergenic 35.0%
AAAACAAAGGATTTGACTCC+TGG - chr1_3:11740666-11740685 Msa0104230:intron 35.0%
TCCTATGTAAAACATGTGCT+AGG - chr1_3:11740697-11740716 Msa0104230:intron 35.0%
CCTATGTAAAACATGTGCTA+GGG - chr1_3:11740698-11740717 Msa0104230:intron 35.0%
! TATTGAAATTTGCTCCCTTC+CGG - chr1_3:11740988-11741007 Msa0104230:intron 35.0%
ACACTTTACATCCATCACAA+CGG + chr1_3:11741034-11741053 None:intergenic 35.0%
!! TTGTGATGGATGTAAAGTGT+GGG - chr1_3:11741034-11741053 Msa0104230:intron 35.0%
! AATCTCCAGCATCCTTTTTA+AGG - chr1_3:11741076-11741095 Msa0104230:intron 35.0%
TAAACTTCACTTTGCAAGCA+GGG + chr1_3:11741241-11741260 None:intergenic 35.0%
TTAAACTTCACTTTGCAAGC+AGG + chr1_3:11741242-11741261 None:intergenic 35.0%
! TCTATTGTTGACTAAAGTGG+AGG - chr1_3:11741467-11741486 Msa0104230:intron 35.0%
!!! GTGGAGGTTTTTTGTATAGA+TGG - chr1_3:11741483-11741502 Msa0104230:intron 35.0%
TATGCTTACAAGTGAAGACA+GGG + chr1_3:11741584-11741603 None:intergenic 35.0%
TTATGCTTACAAGTGAAGAC+AGG + chr1_3:11741585-11741604 None:intergenic 35.0%
CACTGTGATTAGTAGTTAGT+TGG - chr1_3:11741904-11741923 Msa0104230:intron 35.0%
! TTTGTCCAATGCTTTGCTAT+AGG - chr1_3:11741936-11741955 Msa0104230:intron 35.0%
! CTTTTCCTATAGCAAAGCAT+TGG + chr1_3:11741944-11741963 None:intergenic 35.0%
!! TGTGTTTGATTTGGTATTGG+TGG - chr1_3:11742136-11742155 Msa0104230:intron 35.0%
!! GTGTTTGATTTGGTATTGGT+GGG - chr1_3:11742137-11742156 Msa0104230:intron 35.0%
!! TGTTTGATTTGGTATTGGTG+GGG - chr1_3:11742138-11742157 Msa0104230:intron 35.0%
! ATGTGCAAGTGTGATTTTTG+TGG - chr1_3:11742334-11742353 Msa0104230:CDS 35.0%
! TGTGCAAGTGTGATTTTTGT+GGG - chr1_3:11742335-11742354 Msa0104230:CDS 35.0%
! TTTTTGTGGGACTGAAAAAC+AGG - chr1_3:11742348-11742367 Msa0104230:CDS 35.0%
AAAAACAGGCACTTAGTGAA+TGG - chr1_3:11742362-11742381 Msa0104230:CDS 35.0%
AAAACAGGCACTTAGTGAAT+GGG - chr1_3:11742363-11742382 Msa0104230:CDS 35.0%
CAGGTTCCAAATTTAGAAAC+TGG - chr1_3:11742395-11742414 Msa0104230:CDS 35.0%
!!! AAGTTTTAGGGCAAAGAGAT+GGG + chr1_3:11742512-11742531 None:intergenic 35.0%
CATTTGATGTACTAATAGGC+TGG - chr1_3:11742586-11742605 Msa0104230:intron 35.0%
AGTAGATTGGATATGTATGG+GGG - chr1_3:11742824-11742843 Msa0104230:intron 35.0%
ACACGTATGTCTCACAATAA+AGG + chr1_3:11742857-11742876 None:intergenic 35.0%
!! TCTTTTGAGGATGGTCTTTT+AGG + chr1_3:11742966-11742985 None:intergenic 35.0%
AAATTGCTTACCTTTCTGCA+AGG - chr1_3:11742996-11743015 Msa0104230:intron 35.0%
! GTAATGGAAACTATTGTCTC+TGG - chr1_3:11743095-11743114 Msa0104230:intron 35.0%
!! TATGTAGATGGGTTGAAGAT+TGG - chr1_3:11743169-11743188 Msa0104230:intron 35.0%
!! ATGTAGATGGGTTGAAGATT+GGG - chr1_3:11743170-11743189 Msa0104230:intron 35.0%
ACAAAATTATCATCTGCGTC+AGG - chr1_3:11743199-11743218 Msa0104230:intron 35.0%
!!! GTAAATGGTTTTGTTGTCCA+TGG + chr1_3:11743541-11743560 None:intergenic 35.0%
ATGTTCGAGACTTTACATCA+TGG - chr1_3:11743731-11743750 Msa0104230:intron 35.0%
TGTTCGAGACTTTACATCAT+GGG - chr1_3:11743732-11743751 Msa0104230:intron 35.0%
TGTTGTCTTTGTCCTGTAAA+AGG - chr1_3:11743793-11743812 Msa0104230:intron 35.0%
CAAACAATAGAATGCAAAGG+GGG + chr1_3:11743891-11743910 None:intergenic 35.0%
CCAAACAATAGAATGCAAAG+GGG + chr1_3:11743892-11743911 None:intergenic 35.0%
GCAAGGTTAAAAGAATCTAG+AGG + chr1_3:11743922-11743941 None:intergenic 35.0%
!! CTCTTTTGACTGTAGTACTT+GGG - chr1_3:11743972-11743991 Msa0104230:CDS 35.0%
AAATGTATTGTTGGACACTC+AGG - chr1_3:11744068-11744087 Msa0104230:CDS 35.0%
TACTGATATCGATCCGTTAT+GGG - chr1_3:11744106-11744125 Msa0104230:intron 35.0%
! TTTTGCCAGTGATGAGAAAA+TGG - chr1_3:11744166-11744185 Msa0104230:intron 35.0%
ATACTTAAGATACCCAAAGC+AGG + chr1_3:11744194-11744213 None:intergenic 35.0%
TCCATCAAATTCTTTCGTGA+AGG - chr1_3:11744214-11744233 Msa0104230:intron 35.0%
ACCTTCACGAAAGAATTTGA+TGG + chr1_3:11744218-11744237 None:intergenic 35.0%
TCAAATTCTTTCGTGAAGGT+AGG - chr1_3:11744218-11744237 Msa0104230:intron 35.0%
CAAATTCTTTCGTGAAGGTA+GGG - chr1_3:11744219-11744238 Msa0104230:intron 35.0%
ATCCCTTTGCAAAAGAAGTA+TGG - chr1_3:11744303-11744322 Msa0104230:intron 35.0%
ACACATGACATGGAAATAAG+TGG + chr1_3:11744639-11744658 None:intergenic 35.0%
GATCTGATTGATGAAGTTCT+AGG + chr1_3:11744881-11744900 None:intergenic 35.0%
TCAGCAAATTATTCCCTCAA+TGG - chr1_3:11744992-11745011 Msa0104230:CDS 35.0%
!! CTAACGTTTTAGACCATTGA+GGG + chr1_3:11745008-11745027 None:intergenic 35.0%
!! ACTAACGTTTTAGACCATTG+AGG + chr1_3:11745009-11745028 None:intergenic 35.0%
AAATTCAATATCTGAGCCTG+AGG - chr1_3:11745103-11745122 Msa0104230:intron 35.0%
AGTTAGCCCTAGAAAAATGT+TGG + chr1_3:11745183-11745202 None:intergenic 35.0%
TGTGACAAATGTAAACTTGG+AGG - chr1_3:11745204-11745223 Msa0104230:CDS 35.0%
TGAAGAGTAAACCCTGATAT+CGG + chr1_3:11745231-11745250 None:intergenic 35.0%
CAAGAATACTACCACTATAC+AGG - chr1_3:11745254-11745273 Msa0104230:CDS 35.0%
CTATGCAACTGTATTTACAG+AGG + chr1_3:11745492-11745511 None:intergenic 35.0%
TGGTAAACAGACAACAAGAA+TGG - chr1_3:11745524-11745543 Msa0104230:intron 35.0%
TTTGTTACTGTGCTTATCAC+AGG - chr1_3:11745547-11745566 Msa0104230:intron 35.0%
!!! TTTTTGGAATTGTATGGGTG+TGG - chr1_3:11745668-11745687 Msa0104230:intron 35.0%
!!! TTTTGGAATTGTATGGGTGT+GGG - chr1_3:11745669-11745688 Msa0104230:intron 35.0%
ATCAAAACAGTGTCTGGATT+GGG + chr1_3:11745764-11745783 None:intergenic 35.0%
AATCAAAACAGTGTCTGGAT+TGG + chr1_3:11745765-11745784 None:intergenic 35.0%
TTGATTATACAAACCCCTCA+TGG - chr1_3:11745779-11745798 Msa0104230:CDS 35.0%
TGATTATACAAACCCCTCAT+GGG - chr1_3:11745780-11745799 Msa0104230:CDS 35.0%
TAAGAACGAACCACACAAAA+AGG - chr1_3:11745948-11745967 Msa0104230:intron 35.0%
AACCACACAAAAAGGTAACT+TGG - chr1_3:11745956-11745975 Msa0104230:intron 35.0%
! TTCCAAGTTACCTTTTTGTG+TGG + chr1_3:11745961-11745980 None:intergenic 35.0%
ACCATTATGTGGTCTGTTAT+CGG - chr1_3:11746122-11746141 Msa0104230:intron 35.0%
CAGAATGAAAGCAAATGAAG+TGG + chr1_3:11746149-11746168 None:intergenic 35.0%
CTTCATTTGCTTTCATTCTG+TGG - chr1_3:11746149-11746168 Msa0104230:intron 35.0%
! AATAGAGAGTATGGAAGTCA+AGG + chr1_3:11746313-11746332 None:intergenic 35.0%
GACTTCCATACTCTCTATTA+AGG - chr1_3:11746314-11746333 Msa0104230:intron 35.0%
TAAGGCCTTAATAGAGAGTA+TGG + chr1_3:11746322-11746341 None:intergenic 35.0%
! ACATTCTAGAGATAATGGTG+TGG + chr1_3:11746352-11746371 None:intergenic 35.0%
! AGAGGACATTCTAGAGATAA+TGG + chr1_3:11746357-11746376 None:intergenic 35.0%
!! ATTATCTCTAGAATGTCCTC+TGG - chr1_3:11746356-11746375 Msa0104230:intron 35.0%
GTATAGCATCTAAAGGATGA+TGG + chr1_3:11746489-11746508 None:intergenic 35.0%
! TTCGTTTAAAGCTTGAACGT+AGG - chr1_3:11746569-11746588 Msa0104230:intron 35.0%
! TCGTTTAAAGCTTGAACGTA+GGG - chr1_3:11746570-11746589 Msa0104230:intron 35.0%
AAAGAATGAAAATAAGGGGG+CGG + chr1_3:11746612-11746631 None:intergenic 35.0%
GATTTACCTGTAAGTGATGA+AGG + chr1_3:11746700-11746719 None:intergenic 35.0%
! ATCTTCTTTTTCTTCAGTGG+TGG - chr1_3:11746717-11746736 Msa0104230:intron 35.0%
TTTCTTCAGTGGTGGTTTAT+TGG - chr1_3:11746725-11746744 Msa0104230:intron 35.0%
!!! TTGCTCATCGATTTTCTGAT+TGG - chr1_3:11746750-11746769 Msa0104230:intron 35.0%
GAATAGTTCTTCGTGCAAAT+AGG + chr1_3:11746856-11746875 None:intergenic 35.0%
AAAATAGCCAAAGACACCAT+GGG + chr1_3:11746932-11746951 None:intergenic 35.0%
AAAAATAGCCAAAGACACCA+TGG + chr1_3:11746933-11746952 None:intergenic 35.0%
TCATTTAGAAACTGCTGCAT+CGG + chr1_3:11747167-11747186 None:intergenic 35.0%
! ATCTCTAAGAATATCCTTCC+AGG - chr1_3:11747257-11747276 Msa0104230:intron 35.0%
! TCTCTAAGAATATCCTTCCA+GGG - chr1_3:11747258-11747277 Msa0104230:intron 35.0%
GATGTTGACATAACTAGTGT+AGG - chr1_3:11747296-11747315 Msa0104230:CDS 35.0%
AATATCGTGGTGAACAAGTA+AGG - chr1_3:11747553-11747572 Msa0104230:intron 35.0%
GATGAAATCATCAGAAAAGG+GGG + chr1_3:11747649-11747668 None:intergenic 35.0%
GGATGAAATCATCAGAAAAG+GGG + chr1_3:11747650-11747669 None:intergenic 35.0%
GAGGATGAAATCATCAGAAA+AGG + chr1_3:11747652-11747671 None:intergenic 35.0%
GCTGTTCAAAATTAGTGAAG+AGG - chr1_3:11747808-11747827 Msa0104230:intron 35.0%
GTTCAAAATTAGTGAAGAGG+TGG - chr1_3:11747811-11747830 Msa0104230:intron 35.0%
! GTAGTTGATGCAACTGATAA+AGG - chr1_3:11747833-11747852 Msa0104230:intron 35.0%
CTGATAAAGGAAATATTGCG+CGG - chr1_3:11747846-11747865 Msa0104230:intron 35.0%
! AGATAGGTTGACTTACAGAA+TGG + chr1_3:11747880-11747899 None:intergenic 35.0%
!!! TGAACTGTGCATTTTGAGAT+AGG + chr1_3:11747896-11747915 None:intergenic 35.0%
ATGATCCTTGCATAGCAATT+TGG + chr1_3:11748093-11748112 None:intergenic 35.0%
! TACAGGAAAAAGCATAGATG+GGG + chr1_3:11748195-11748214 None:intergenic 35.0%
! GATACAGGAAAAAGCATAGA+TGG + chr1_3:11748197-11748216 None:intergenic 35.0%
AATGCATGGTGAAATGATAC+AGG + chr1_3:11748212-11748231 None:intergenic 35.0%
ATGATTCACTCCAAAATGCA+TGG + chr1_3:11748226-11748245 None:intergenic 35.0%
TTGGAGCTTTACACAAACAA+GGG + chr1_3:11748577-11748596 None:intergenic 35.0%
! TTTGGAGCTTTACACAAACA+AGG + chr1_3:11748578-11748597 None:intergenic 35.0%
TTACAGCTTGTGTATAACTG+AGG + chr1_3:11748695-11748714 None:intergenic 35.0%
ACTGAATCATTAAACCGCGA+CGG + chr1_3:11739276-11739295 None:intergenic 40.0%
TTCAAATTCACGAAAGCTCG+TGG + chr1_3:11739361-11739380 None:intergenic 40.0%
AATGGAACTGGAAATGGAAC+CGG - chr1_3:11739432-11739451 Msa0104230:three_prime_UTR 40.0%
TTGTGGCAGGTGATATAGTT+TGG - chr1_3:11739617-11739636 Msa0104230:CDS 40.0%
TGTGGCAGGTGATATAGTTT+GGG - chr1_3:11739618-11739637 Msa0104230:CDS 40.0%
AGGTGATATAGTTTGGGCTA+AGG - chr1_3:11739624-11739643 Msa0104230:CDS 40.0%
ATATAGTTTGGGCTAAGGCT+AGG - chr1_3:11739629-11739648 Msa0104230:CDS 40.0%
ATCACAATTGCAGGCCAAAA+TGG + chr1_3:11739664-11739683 None:intergenic 40.0%
ATGGCATCAATCACAATTGC+AGG + chr1_3:11739673-11739692 None:intergenic 40.0%
GCTACTTGTGTCATGTTTCT+TGG - chr1_3:11739736-11739755 Msa0104230:intron 40.0%
TCATGTTTCTTGGCTACTCT+AGG - chr1_3:11739746-11739765 Msa0104230:intron 40.0%
! ACTCTAGGAATGATGATCAC+AGG - chr1_3:11739761-11739780 Msa0104230:intron 40.0%
! CTCTAGGAATGATGATCACA+GGG - chr1_3:11739762-11739781 Msa0104230:intron 40.0%
TTGTGAACAGGACTTTGCAT+GGG - chr1_3:11739910-11739929 Msa0104230:intron 40.0%
ACTTTGCATGGGTGAAGTAT+GGG - chr1_3:11739921-11739940 Msa0104230:intron 40.0%
TGATCCGTCTCAATTTCAAG+TGG - chr1_3:11740123-11740142 Msa0104230:intron 40.0%
! ACTGCCACTTGAAATTGAGA+CGG + chr1_3:11740130-11740149 None:intergenic 40.0%
! TCAATTTCAAGTGGCAGTTG+AGG - chr1_3:11740132-11740151 Msa0104230:intron 40.0%
AATACAGAAGTGATGTAGCC+TGG - chr1_3:11740516-11740535 Msa0104230:intron 40.0%
! CCCTAGCACATGTTTTACAT+AGG + chr1_3:11740701-11740720 None:intergenic 40.0%
GCGGCATATGTAAGAAAGTT+TGG - chr1_3:11740871-11740890 Msa0104230:intron 40.0%
! GTTTGGAATCAATCGGATAG+CGG - chr1_3:11740888-11740907 Msa0104230:intron 40.0%
ATCACAACGGACCTAATTCA+AGG + chr1_3:11741021-11741040 None:intergenic 40.0%
TTGAATTAGGTCCGTTGTGA+TGG - chr1_3:11741020-11741039 Msa0104230:intron 40.0%
!! GTTGTGATGGATGTAAAGTG+TGG - chr1_3:11741033-11741052 Msa0104230:intron 40.0%
CATCAAGTATGACGGTGTAA+TGG + chr1_3:11741107-11741126 None:intergenic 40.0%
ATGGAGCAAATACAATGGGA+AGG - chr1_3:11741502-11741521 Msa0104230:CDS 40.0%
! TCAAATAGCATTGTGGACTG+TGG + chr1_3:11741783-11741802 None:intergenic 40.0%
TCTCTTAAAAAGGGCGAAGA+TGG - chr1_3:11741812-11741831 Msa0104230:intron 40.0%
AGGAGAACATGGAAAACAAG+GGG + chr1_3:11742306-11742325 None:intergenic 40.0%
CAGGAGAACATGGAAAACAA+GGG + chr1_3:11742307-11742326 None:intergenic 40.0%
TAAAGGATCCATGATATCGC+TGG - chr1_3:11742435-11742454 Msa0104230:intron 40.0%
CATGATATCGCTGGAACAAT+GGG - chr1_3:11742444-11742463 Msa0104230:intron 40.0%
GAGATGGGAAATAGTATGCA+CGG + chr1_3:11742497-11742516 None:intergenic 40.0%
!!! GAAGTTTTAGGGCAAAGAGA+TGG + chr1_3:11742513-11742532 None:intergenic 40.0%
!! GTGAAATCTTGATGATGCGA+TGG + chr1_3:11742657-11742676 None:intergenic 40.0%
TCATGAGACTTAAGTTCCCA+TGG + chr1_3:11742774-11742793 None:intergenic 40.0%
TTAACAGGTACCTTGCAGAA+AGG + chr1_3:11743009-11743028 None:intergenic 40.0%
ATGAACCTGTTTGTGCTAAG+TGG - chr1_3:11743127-11743146 Msa0104230:intron 40.0%
AACGATGTGCTGTATGTAGA+TGG - chr1_3:11743157-11743176 Msa0104230:intron 40.0%
ACGATGTGCTGTATGTAGAT+GGG - chr1_3:11743158-11743177 Msa0104230:intron 40.0%
!! CAAATACTGGAGGCATTTCT+TGG + chr1_3:11743396-11743415 None:intergenic 40.0%
CAAGAAATGCCTCCAGTATT+TGG - chr1_3:11743394-11743413 Msa0104230:intron 40.0%
! ATGGGGGCGTATATATGATA+AGG + chr1_3:11743497-11743516 None:intergenic 40.0%
GCTGTTCATCAAGAATGCTA+TGG - chr1_3:11743700-11743719 Msa0104230:intron 40.0%
! AGAAGACACACACCTTTTAC+AGG + chr1_3:11743808-11743827 None:intergenic 40.0%
CCCCTTTGCATTCTATTGTT+TGG - chr1_3:11743889-11743908 Msa0104230:intron 40.0%
CCAAGTACTACAGTCAAAAG+AGG + chr1_3:11743974-11743993 None:intergenic 40.0%
!! CCTCTTTTGACTGTAGTACT+TGG - chr1_3:11743971-11743990 Msa0104230:CDS 40.0%
!! CATAACGGATCGATATCAGT+AGG + chr1_3:11744107-11744126 None:intergenic 40.0%
CTACTGATATCGATCCGTTA+TGG - chr1_3:11744105-11744124 Msa0104230:intron 40.0%
CAAGTGACATGAACCCATAA+CGG + chr1_3:11744122-11744141 None:intergenic 40.0%
TCACTGGCAAAAGATACTTC+AGG + chr1_3:11744158-11744177 None:intergenic 40.0%
!! ATTGATGAAGTTCTAGGCAG+GGG + chr1_3:11744875-11744894 None:intergenic 40.0%
!! GATTGATGAAGTTCTAGGCA+GGG + chr1_3:11744876-11744895 None:intergenic 40.0%
!! TGATTGATGAAGTTCTAGGC+AGG + chr1_3:11744877-11744896 None:intergenic 40.0%
TACTGTGCTTATCACAGGTA+TGG - chr1_3:11745552-11745571 Msa0104230:intron 40.0%
GATTATACAAACCCCTCATG+GGG - chr1_3:11745781-11745800 Msa0104230:CDS 40.0%
TAGTTGAAATGACCCCATGA+GGG + chr1_3:11745796-11745815 None:intergenic 40.0%
TTAGTTGAAATGACCCCATG+AGG + chr1_3:11745797-11745816 None:intergenic 40.0%
!! TCATGTTCGGTGTTATCTTC+TGG + chr1_3:11745896-11745915 None:intergenic 40.0%
AGCAGAAAATGGGTCATGTT+CGG + chr1_3:11745909-11745928 None:intergenic 40.0%
GGTTCGTTCTTACAAAGACT+CGG + chr1_3:11745940-11745959 None:intergenic 40.0%
ACCGATAACAGACCACATAA+TGG + chr1_3:11746126-11746145 None:intergenic 40.0%
TCCCACATTGCTTAGATACT+TGG - chr1_3:11746182-11746201 Msa0104230:intron 40.0%
GCCAAGTATCTAAGCAATGT+GGG + chr1_3:11746186-11746205 None:intergenic 40.0%
TAATGGTGTGGTGGCTAATA+AGG + chr1_3:11746340-11746359 None:intergenic 40.0%
! TTCTAGAGATAATGGTGTGG+TGG + chr1_3:11746349-11746368 None:intergenic 40.0%
AGAACTGATAAAGATGCCAG+AGG + chr1_3:11746375-11746394 None:intergenic 40.0%
AAGCCATTCCTCATAAAGTG+AGG - chr1_3:11746455-11746474 Msa0104230:intron 40.0%
AGCCATTCCTCATAAAGTGA+GGG - chr1_3:11746456-11746475 Msa0104230:intron 40.0%
! CGTTTAAAGCTTGAACGTAG+GGG - chr1_3:11746571-11746590 Msa0104230:intron 40.0%
AAGAATGAAAATAAGGGGGC+GGG + chr1_3:11746611-11746630 None:intergenic 40.0%
CTCATCTCTTTCCCTCAAAT+AGG - chr1_3:11746634-11746653 Msa0104230:intron 40.0%
ATCTCTTTCCCTCAAATAGG+TGG - chr1_3:11746637-11746656 Msa0104230:intron 40.0%
CTCATCTACCACCTATTTGA+GGG + chr1_3:11746648-11746667 None:intergenic 40.0%
ACTCATCTACCACCTATTTG+AGG + chr1_3:11746649-11746668 None:intergenic 40.0%
TAGATCAGGCATACATGGAT+GGG - chr1_3:11746829-11746848 Msa0104230:intron 40.0%
GCACGAAGAACTATTCAAGA+AGG - chr1_3:11746860-11746879 Msa0104230:intron 40.0%
GAAAAGATGACATAGACCCA+TGG - chr1_3:11746913-11746932 Msa0104230:CDS 40.0%
TAAGAATATCCTTCCAGGGT+TGG - chr1_3:11747262-11747281 Msa0104230:intron 40.0%
TCTAAATCCAAAACCAACCC+TGG + chr1_3:11747278-11747297 None:intergenic 40.0%
ACAGAAACACAAAGGATCAC+AGG + chr1_3:11747464-11747483 None:intergenic 40.0%
GACGGAAAACAGAAACACAA+AGG + chr1_3:11747472-11747491 None:intergenic 40.0%
CTTGTTCACCACGATATTCA+AGG + chr1_3:11747551-11747570 None:intergenic 40.0%
AGGCGCGGTATAAATTAGAA+AGG - chr1_3:11747598-11747617 Msa0104230:intron 40.0%
GAGGGAAAATAATAGAGCAG+AGG + chr1_3:11747709-11747728 None:intergenic 40.0%
GTATGCCAAATTGCTATGCA+AGG - chr1_3:11748085-11748104 Msa0104230:CDS 40.0%
TATGCAAGGATCATGAGTGT+GGG - chr1_3:11748099-11748118 Msa0104230:intron 40.0%
!! TACGTTAGTCTTGGCAATGA+GGG + chr1_3:11748145-11748164 None:intergenic 40.0%
!! ATACGTTAGTCTTGGCAATG+AGG + chr1_3:11748146-11748165 None:intergenic 40.0%
AACAAGTAGTCATACCTGTC+AGG + chr1_3:11748524-11748543 None:intergenic 40.0%
! TTGAATTCATCTGGCTCATC+AGG + chr1_3:11748551-11748570 None:intergenic 40.0%
CAAGGGACTTTGAATTCATC+TGG + chr1_3:11748560-11748579 None:intergenic 40.0%
! ACAAGTATTGTTTCTCCGCA+AGG - chr1_3:11748639-11748658 Msa0104230:intron 40.0%
GGGAAGAATGGAACTGGAAA+TGG - chr1_3:11739426-11739445 Msa0104230:three_prime_UTR 45.0%
! AGGGTATTCGGAATTGTGTG+AGG - chr1_3:11739464-11739483 Msa0104230:three_prime_UTR 45.0%
GTATTCGGAATTGTGTGAGG+AGG - chr1_3:11739467-11739486 Msa0104230:three_prime_UTR 45.0%
!! TGGTGTTGCTGCTACTAGTA+AGG - chr1_3:11739506-11739525 Msa0104230:three_prime_UTR 45.0%
TCACCTGCCACAAAATCTTC+TGG + chr1_3:11739610-11739629 None:intergenic 45.0%
TTGGGCTAAGGCTAGGAAAA+AGG - chr1_3:11739636-11739655 Msa0104230:CDS 45.0%
CATGATCTCAAAACCAGCTC+AGG + chr1_3:11739706-11739725 None:intergenic 45.0%
GTTGTGAACAGGACTTTGCA+TGG - chr1_3:11739909-11739928 Msa0104230:intron 45.0%
GACTTTGCATGGGTGAAGTA+TGG - chr1_3:11739920-11739939 Msa0104230:intron 45.0%
! ATTTCAAGTGGCAGTTGAGG+AGG - chr1_3:11740135-11740154 Msa0104230:intron 45.0%
GAAGATATAAATGCGGTGGC+TGG - chr1_3:11740196-11740215 Msa0104230:intron 45.0%
AATGCGGTGGCTGGTAATAA+TGG - chr1_3:11740205-11740224 Msa0104230:intron 45.0%
CACTGCTTCAAACCAGAAGA+AGG - chr1_3:11740267-11740286 Msa0104230:intron 45.0%
! GAAGCTGACTTACCTTCTTC+TGG + chr1_3:11740282-11740301 None:intergenic 45.0%
ACAAAGGATTTGACTCCTGG+TGG - chr1_3:11740669-11740688 Msa0104230:intron 45.0%
TTACATAGGAGTTGACCACC+AGG + chr1_3:11740687-11740706 None:intergenic 45.0%
!! ATCAATCGGATAGCGGAAGT+TGG - chr1_3:11740895-11740914 Msa0104230:intron 45.0%
!! TCAATCGGATAGCGGAAGTT+GGG - chr1_3:11740896-11740915 Msa0104230:intron 45.0%
CGGAAGTTGGGTGAGTTAAT+TGG - chr1_3:11740908-11740927 Msa0104230:intron 45.0%
CCTAATTCAAGGCGAACATC+CGG + chr1_3:11741010-11741029 None:intergenic 45.0%
! GCTGGAGATTTTGTCGCATT+CGG + chr1_3:11741066-11741085 None:intergenic 45.0%
TAGGCTACAAATAGGGAGTG+TGG + chr1_3:11741339-11741358 None:intergenic 45.0%
GAAGGTAGTGCTTCCAAAGA+AGG - chr1_3:11741520-11741539 Msa0104230:CDS 45.0%
CAGAGAACAGTGACCTTCTT+TGG + chr1_3:11741536-11741555 None:intergenic 45.0%
AAGGTCACTGTTCTCTGCAA+TGG - chr1_3:11741539-11741558 Msa0104230:intron 45.0%
AGATGGCAGTATCTCGTCAA+TGG - chr1_3:11741829-11741848 Msa0104230:intron 45.0%
GCAGGAGAACATGGAAAACA+AGG + chr1_3:11742308-11742327 None:intergenic 45.0%
CATAACTCTGCAGGAGAACA+TGG + chr1_3:11742317-11742336 None:intergenic 45.0%
ACACTTGCACATAACTCTGC+AGG + chr1_3:11742326-11742345 None:intergenic 45.0%
CCATTGTTCCAGCGATATCA+TGG + chr1_3:11742446-11742465 None:intergenic 45.0%
CCATGATATCGCTGGAACAA+TGG - chr1_3:11742443-11742462 Msa0104230:intron 45.0%
ACTGACCTAGTGAGAATCCA+TGG - chr1_3:11742754-11742773 Msa0104230:intron 45.0%
CTGACCTAGTGAGAATCCAT+GGG - chr1_3:11742755-11742774 Msa0104230:intron 45.0%
AGTTCCCATGGATTCTCACT+AGG + chr1_3:11742762-11742781 None:intergenic 45.0%
GACTTCTCAGATGCTACAGT+TGG - chr1_3:11742902-11742921 Msa0104230:intron 45.0%
GTAGTCCACTTAGCACAAAC+AGG + chr1_3:11743135-11743154 None:intergenic 45.0%
ACTCATAAGGTGGATGGATG+GGG + chr1_3:11743514-11743533 None:intergenic 45.0%
CACTCATAAGGTGGATGGAT+GGG + chr1_3:11743515-11743534 None:intergenic 45.0%
TCACTCATAAGGTGGATGGA+TGG + chr1_3:11743516-11743535 None:intergenic 45.0%
TGTCCATGGTCTCACTCATA+AGG + chr1_3:11743527-11743546 None:intergenic 45.0%
ACAATAGAATGCAAAGGGGG+AGG + chr1_3:11743888-11743907 None:intergenic 45.0%
TGTATTGTTGGACACTCAGG+TGG - chr1_3:11744071-11744090 Msa0104230:CDS 45.0%
AGATACTTCAGGTCGAAACC+AGG + chr1_3:11744147-11744166 None:intergenic 45.0%
! AGGCTCCATTTTCTCATCAC+TGG + chr1_3:11744174-11744193 None:intergenic 45.0%
TGAGAAAATGGAGCCTGCTT+TGG - chr1_3:11744178-11744197 Msa0104230:intron 45.0%
GAGAAAATGGAGCCTGCTTT+GGG - chr1_3:11744179-11744198 Msa0104230:intron 45.0%
! AGAAATCTGGAGTAGAGCCT+AGG + chr1_3:11744491-11744510 None:intergenic 45.0%
TCCATGTCATGTGTGCATCA+AGG - chr1_3:11744645-11744664 Msa0104230:intron 45.0%
CCATGTCATGTGTGCATCAA+GGG - chr1_3:11744646-11744665 Msa0104230:intron 45.0%
AAACTTGGAGGACCGATATC+AGG - chr1_3:11745216-11745235 Msa0104230:CDS 45.0%
AACTTGGAGGACCGATATCA+GGG - chr1_3:11745217-11745236 Msa0104230:CDS 45.0%
! TGGCTTGCGATAAGAAAAGC+AGG - chr1_3:11745302-11745321 Msa0104230:intron 45.0%
GGCTTGCGATAAGAAAAGCA+GGG - chr1_3:11745303-11745322 Msa0104230:intron 45.0%
AGTTGAAATGACCCCATGAG+GGG + chr1_3:11745795-11745814 None:intergenic 45.0%
!! TGTTCGGTGTTATCTTCTGG+AGG + chr1_3:11745893-11745912 None:intergenic 45.0%
! ATGACCCATTTTCTGCTGCT+AGG - chr1_3:11745912-11745931 Msa0104230:intron 45.0%
GGCCAAGTATCTAAGCAATG+TGG + chr1_3:11746187-11746206 None:intergenic 45.0%
TACAATGAGAATGTACGGCG+AGG + chr1_3:11746235-11746254 None:intergenic 45.0%
GCCATTCCTCATAAAGTGAG+GGG - chr1_3:11746457-11746476 Msa0104230:intron 45.0%
ACCCCTCACTTTATGAGGAA+TGG + chr1_3:11746461-11746480 None:intergenic 45.0%
TAGTGACCCCTCACTTTATG+AGG + chr1_3:11746466-11746485 None:intergenic 45.0%
AGAATGAAAATAAGGGGGCG+GGG + chr1_3:11746610-11746629 None:intergenic 45.0%
! GAAGCACACTCGTTCGTTTT+CGG + chr1_3:11746807-11746826 None:intergenic 45.0%
GAAAACGAACGAGTGTGCTT+CGG - chr1_3:11746806-11746825 Msa0104230:intron 45.0%
TTCGGTAGATCAGGCATACA+TGG - chr1_3:11746824-11746843 Msa0104230:intron 45.0%
GTAGATCAGGCATACATGGA+TGG - chr1_3:11746828-11746847 Msa0104230:intron 45.0%
AGATCAGGCATACATGGATG+GGG - chr1_3:11746830-11746849 Msa0104230:intron 45.0%
ACATAGACCCATGGTGTCTT+TGG - chr1_3:11746922-11746941 Msa0104230:CDS 45.0%
!!! TATCCTTCCAGGGTTGGTTT+TGG - chr1_3:11747268-11747287 Msa0104230:intron 45.0%
AATCCAAAACCAACCCTGGA+AGG + chr1_3:11747274-11747293 None:intergenic 45.0%
CGATATTCAAGGACCTGCAT+TGG + chr1_3:11747540-11747559 None:intergenic 45.0%
ATGCAGGTCCTTGAATATCG+TGG - chr1_3:11747540-11747559 Msa0104230:intron 45.0%
TAGAGCAGAGGAAACCAAAG+TGG + chr1_3:11747697-11747716 None:intergenic 45.0%
CTATGCAAGGATCATGAGTG+TGG - chr1_3:11748098-11748117 Msa0104230:intron 45.0%
! ACCAGCAGATACGTTAGTCT+TGG + chr1_3:11748154-11748173 None:intergenic 45.0%
TAACCGGTTGCAGCATCAAT+GGG - chr1_3:11748667-11748686 Msa0104230:CDS 45.0%
TGCAATGGGAAGGGGAAGAA+TGG - chr1_3:11739414-11739433 Msa0104230:three_prime_UTR 50.0%
! GGACCAGAAGATTTTGTGGC+AGG - chr1_3:11739604-11739623 Msa0104230:CDS 50.0%
!!! AGTTGAGGAGGCGTTTTTGG+CGG - chr1_3:11740147-11740166 Msa0104230:intron 50.0%
GTGGGACTTTGTGACGAATG+TGG - chr1_3:11740616-11740635 Msa0104230:CDS 50.0%
TTCAAGGCGAACATCCGGAA+GGG + chr1_3:11741005-11741024 None:intergenic 50.0%
ATTCAAGGCGAACATCCGGA+AGG + chr1_3:11741006-11741025 None:intergenic 50.0%
CCGGATGTTCGCCTTGAATT+AGG - chr1_3:11741007-11741026 Msa0104230:intron 50.0%
CACTGTTCTCTGCAATGGTG+TGG - chr1_3:11741544-11741563 Msa0104230:intron 50.0%
GTTCTCTGCAATGGTGTGGA+AGG - chr1_3:11741548-11741567 Msa0104230:intron 50.0%
AGTGAATGGGAACGTCACAC+AGG - chr1_3:11742376-11742395 Msa0104230:CDS 50.0%
CTCATAAGGTGGATGGATGG+GGG + chr1_3:11743513-11743532 None:intergenic 50.0%
GGTCTCACTCATAAGGTGGA+TGG + chr1_3:11743520-11743539 None:intergenic 50.0%
CCATGGTCTCACTCATAAGG+TGG + chr1_3:11743524-11743543 None:intergenic 50.0%
CCACCTTATGAGTGAGACCA+TGG - chr1_3:11743521-11743540 Msa0104230:intron 50.0%
CAACACTCTCGTGTGATGTC+TGG + chr1_3:11743778-11743797 None:intergenic 50.0%
CCCTTGATGCACACATGACA+TGG + chr1_3:11744649-11744668 None:intergenic 50.0%
GGCACCTAGCAGCAGAAAAT+GGG + chr1_3:11745919-11745938 None:intergenic 50.0%
CATAATGGTCGCAGCTAAGG+CGG + chr1_3:11746111-11746130 None:intergenic 50.0%
CCACATAATGGTCGCAGCTA+AGG + chr1_3:11746114-11746133 None:intergenic 50.0%
CCTTAGCTGCGACCATTATG+TGG - chr1_3:11746111-11746130 Msa0104230:intron 50.0%
GGAACGCCTTCATCACTTAC+AGG - chr1_3:11746691-11746710 Msa0104230:intron 50.0%
! CTCGTTCGTTTTCGGTTCTC+TGG + chr1_3:11746799-11746818 None:intergenic 50.0%
GCCAAGACTAACGTATCTGC+TGG - chr1_3:11748150-11748169 Msa0104230:intron 50.0%
CTAACCGGTTGCAGCATCAA+TGG - chr1_3:11748666-11748685 Msa0104230:CDS 50.0%
GTTCCCATTGATGCTGCAAC+CGG + chr1_3:11748673-11748692 None:intergenic 50.0%
GGGAAGGGGAAGAATGGAAC+TGG - chr1_3:11739420-11739439 Msa0104230:three_prime_UTR 55.0%
ACTGGAAATGGAACCGGCAG+AGG - chr1_3:11739438-11739457 Msa0104230:three_prime_UTR 55.0%
CTGGAAATGGAACCGGCAGA+GGG - chr1_3:11739439-11739458 Msa0104230:three_prime_UTR 55.0%
CAGCTCAGGTGCTTGACTCA+TGG + chr1_3:11739692-11739711 None:intergenic 55.0%
CATGAGTCAAGCACCTGAGC+TGG - chr1_3:11739690-11739709 Msa0104230:intron 55.0%
!!! GGCAGTTGAGGAGGCGTTTT+TGG - chr1_3:11740144-11740163 Msa0104230:intron 55.0%
!!! GAGGCGTTTTTGGCGGATCA+GGG - chr1_3:11740154-11740173 Msa0104230:intron 55.0%
!!! AGGCGTTTTTGGCGGATCAG+GGG - chr1_3:11740155-11740174 Msa0104230:intron 55.0%
!! TGGATATGTATGGGGGCGCT+AGG - chr1_3:11742831-11742850 Msa0104230:intron 55.0%
! GGGTTCATGTCACTTGTGCC+TGG - chr1_3:11744126-11744145 Msa0104230:intron 55.0%
CACATTGTGTGCACGAGCCA+TGG + chr1_3:11744607-11744626 None:intergenic 55.0%
GTCATGTGTGCATCAAGGGC+CGG - chr1_3:11744650-11744669 Msa0104230:intron 55.0%
ATCAAGGGCCGGTTATCGCA+TGG - chr1_3:11744661-11744680 Msa0104230:intron 55.0%
CCTCACCTCCATGCGATAAC+CGG + chr1_3:11744672-11744691 None:intergenic 55.0%
CGGCACCTAGCAGCAGAAAA+TGG + chr1_3:11745920-11745939 None:intergenic 55.0%
CGAGTGTGCTTCGGTAGATC+AGG - chr1_3:11746815-11746834 Msa0104230:intron 55.0%
ATCTGCCTCGTGCAAGACAC+AGG + chr1_3:11747324-11747343 None:intergenic 55.0%
ATACCGCGCCTCCCTTAGAT+CGG + chr1_3:11747589-11747608 None:intergenic 55.0%
GTGTGGGTCATGATGAGAGC+CGG - chr1_3:11748115-11748134 Msa0104230:intron 55.0%
TCTTGGCAATGAGGGCGATC+CGG + chr1_3:11748137-11748156 None:intergenic 55.0%
!! TCTCCGCAAGGAGCACTAAC+CGG - chr1_3:11748651-11748670 Msa0104230:CDS 55.0%
CAACCGGTTAGTGCTCCTTG+CGG + chr1_3:11748657-11748676 None:intergenic 55.0%
!!! GGAGGCGTTTTTGGCGGATC+AGG - chr1_3:11740153-11740172 Msa0104230:intron 60.0%
AAGGGCCGGTTATCGCATGG+AGG - chr1_3:11744664-11744683 Msa0104230:intron 60.0%
CCGGTTATCGCATGGAGGTG+AGG - chr1_3:11744669-11744688 Msa0104230:intron 60.0%
AGGAGCCTGTGTCTTGCACG+AGG - chr1_3:11747316-11747335 Msa0104230:CDS 60.0%
GCGCAGCGTTGCCGATCTAA+GGG - chr1_3:11747575-11747594 Msa0104230:intron 60.0%
CAGCGTTGCCGATCTAAGGG+AGG - chr1_3:11747578-11747597 Msa0104230:intron 60.0%
TTGCCGATCTAAGGGAGGCG+CGG - chr1_3:11747583-11747602 Msa0104230:intron 60.0%
AATGGAACCGGCAGAGGGCG+AGG - chr1_3:11739444-11739463 Msa0104230:three_prime_UTR 65.0%
ATGGAACCGGCAGAGGGCGA+GGG - chr1_3:11739445-11739464 Msa0104230:three_prime_UTR 65.0%
CGAATACCCTCGCCCTCTGC+CGG + chr1_3:11739454-11739473 None:intergenic 65.0%
!! CGGCAGAGGGCGAGGGTATT+CGG - chr1_3:11739452-11739471 Msa0104230:three_prime_UTR 65.0%
GGCGCAGCGTTGCCGATCTA+AGG - chr1_3:11747574-11747593 Msa0104230:intron 65.0%
AATGCGGCCGCGACGTCTGC+AGG - chr1_3:11739327-11739346 Msa0104230:three_prime_UTR 70.0%
AGCCGCGCCTGCAGACGTCG+CGG + chr1_3:11739337-11739356 None:intergenic 75.0%
! GGCCGCGACGTCTGCAGGCG+CGG - chr1_3:11739332-11739351 Msa0104230:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 11739270 11748933 11739270 ID=Msa0104230;Name=Msa0104230
chr1_3 mRNA 11739270 11748933 11739270 ID=Msa0104230-mRNA-1;Parent=Msa0104230;Name=Msa0104230-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.71|0.86|0.95|1|1|22|314|820
chr1_3 exon 11739270 11739674 11739270 ID=Msa0104230-mRNA-1:exon:4846;Parent=Msa0104230-mRNA-1
chr1_3 exon 11740019 11740119 11740019 ID=Msa0104230-mRNA-1:exon:4845;Parent=Msa0104230-mRNA-1
chr1_3 exon 11740320 11740394 11740320 ID=Msa0104230-mRNA-1:exon:4844;Parent=Msa0104230-mRNA-1
chr1_3 exon 11740571 11740657 11740571 ID=Msa0104230-mRNA-1:exon:4843;Parent=Msa0104230-mRNA-1
chr1_3 exon 11741314 11741403 11741314 ID=Msa0104230-mRNA-1:exon:4842;Parent=Msa0104230-mRNA-1
chr1_3 exon 11741491 11741547 11741491 ID=Msa0104230-mRNA-1:exon:4841;Parent=Msa0104230-mRNA-1
chr1_3 exon 11741675 11741761 11741675 ID=Msa0104230-mRNA-1:exon:4840;Parent=Msa0104230-mRNA-1
chr1_3 exon 11741952 11742021 11741952 ID=Msa0104230-mRNA-1:exon:4839;Parent=Msa0104230-mRNA-1
chr1_3 exon 11742234 11742446 11742234 ID=Msa0104230-mRNA-1:exon:4838;Parent=Msa0104230-mRNA-1
chr1_3 exon 11742635 11742699 11742635 ID=Msa0104230-mRNA-1:exon:4837;Parent=Msa0104230-mRNA-1
chr1_3 exon 11743968 11744113 11743968 ID=Msa0104230-mRNA-1:exon:4836;Parent=Msa0104230-mRNA-1
chr1_3 exon 11744389 11744513 11744389 ID=Msa0104230-mRNA-1:exon:4835;Parent=Msa0104230-mRNA-1
chr1_3 exon 11744983 11745082 11744983 ID=Msa0104230-mRNA-1:exon:4834;Parent=Msa0104230-mRNA-1
chr1_3 exon 11745186 11745291 11745186 ID=Msa0104230-mRNA-1:exon:4833;Parent=Msa0104230-mRNA-1
chr1_3 exon 11745738 11745873 11745738 ID=Msa0104230-mRNA-1:exon:4832;Parent=Msa0104230-mRNA-1
chr1_3 exon 11746900 11746991 11746900 ID=Msa0104230-mRNA-1:exon:4831;Parent=Msa0104230-mRNA-1
chr1_3 exon 11747106 11747174 11747106 ID=Msa0104230-mRNA-1:exon:4830;Parent=Msa0104230-mRNA-1
chr1_3 exon 11747286 11747354 11747286 ID=Msa0104230-mRNA-1:exon:4829;Parent=Msa0104230-mRNA-1
chr1_3 exon 11747915 11748110 11747915 ID=Msa0104230-mRNA-1:exon:4828;Parent=Msa0104230-mRNA-1
chr1_3 exon 11748228 11748283 11748228 ID=Msa0104230-mRNA-1:exon:4827;Parent=Msa0104230-mRNA-1
chr1_3 exon 11748420 11748557 11748420 ID=Msa0104230-mRNA-1:exon:4826;Parent=Msa0104230-mRNA-1
chr1_3 exon 11748640 11748933 11748640 ID=Msa0104230-mRNA-1:exon:4825;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11748640 11748933 11748640 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11748420 11748557 11748420 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11748228 11748283 11748228 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11747915 11748110 11747915 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11747286 11747354 11747286 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11747106 11747174 11747106 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11746900 11746991 11746900 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11745738 11745873 11745738 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11745186 11745291 11745186 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11744983 11745082 11744983 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11744389 11744513 11744389 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11743968 11744113 11743968 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11742635 11742699 11742635 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11742234 11742446 11742234 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11741952 11742021 11741952 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11741675 11741761 11741675 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11741491 11741547 11741491 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11741314 11741403 11741314 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11740571 11740657 11740571 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11740320 11740394 11740320 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11740019 11740119 11740019 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 CDS 11739584 11739674 11739584 ID=Msa0104230-mRNA-1:cds;Parent=Msa0104230-mRNA-1
chr1_3 three_prime_UTR 11739270 11739583 11739270 ID=Msa0104230-mRNA-1:three_prime_utr;Parent=Msa0104230-mRNA-1
Gene Sequence

>Msa0104230

ATGCCGTCGCGGTTTAATGATTCAGTTATTGTCAATTGGAGGAAAGATGGTAAAAACAATGCGGCCGCGACGTCTGCAGGCGCGGCTGCCACGAGCTTTCGTGAATTTGAATTTGAAAAATTTGAAGATTTTGGTCTTAAGAAATGCAATGGGAAGGGGAAGAATGGAACTGGAAATGGAACCGGCAGAGGGCGAGGGTATTCGGAATTGTGTGAGGAGGTGTTGCATAAGAATTTTGGTGTTGCTGCTACTAGTAAGGAAATGAGTTTGCGTGAGATTTTTGAAGAAACAAAGGCTAGGAAAAAGGAACCATTTTGGCCTGCAATTGTGATTGATGCCATGAGTCAAGCACCTGAGCTGGTTTTGAGATCATGTATAGCTGATGCTACTTGTGTCATGTTTCTTGGCTACTCTAGGAATGATGATCACAGGGACTTTGCATGGGTGAAGTATGGGATGATTTTTCCATTTGTGGAAAATGTAGACAGGTTTCAAGAGCAGTCTGAGTTGAGTTACTGTGATCCGTCTCAATTTCAAGTGGCAGTTGAGGAGGCGTTTTTGGCGGATCAGGGGTTTGTAGAGAAGTTAACAGAAGATATAAATGCGGTGGCTGGTAATAATGGTTGCAGTGATGATTCTATTATTAAAAGCTTTCAGAAAGTCACTGCTTCAAACCAGAAGAAGTTGACGAAATCGAAACATTATTGCGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGCGGAAGTTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCCAGCATCCTTTTTAAGAATCTTGGAAGCACTGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCTGATTCAGAAAAATCACATCCAAAAATCAAAGTTATGTGCAAGTGTGATTTTTGTGGGACTGAAAAACAGGCACTTAGTGAATGGGAACGTCACACAGGTTCCAAATTTAGAAACTGGAAAACAAGTATTCAGGTTAAAGGATCCATGATATCGCTGGAACAATGGATGCTACAGTTGGCTGATTTTCATGCTAAAGTTGTAGTTTCTTCTGTCAAACCTAAAAGACCATCCTCAAAAGAAAGAAAACATAAATTGCTTACCTTTCTGCAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGCGTCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACACGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATATCGATCCGTTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCCAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTAAGTATTCCATCAAATTCTTTCGTGAAGTTGCATAGTTCGGAAAAAAATGGTAAACAGACAACAAGAATGGTTTGTTACTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATACAAACCCCTCATGGGGTCATTTCAACTAAAATCCTTATCCAAAATAAGAGAAAAGTTGGGTCAAGATTAATTTCGTCGAACAGAATAAAGGTAGAAGACACTCCTCCAGAAGATAACACCGAACATGACCCATTTTCTGCTGCTAGGTGCCGAGTCTTTGTAAGAACGAACCACACAAAAAGTCCCACATTGCTTAGATACTTGGCCTTTGTAGTAATTGTAAGACTTGGCTCCTCGCCGTACATTCTCATTAGAGCAGCAGATGAAGCCATTCCTCATAAAGTGAGGGGTCACTACCATCATCCTTTAGATGCTATACAGAGATTAAATTCATCCAAAGTGGTAGATGAGTCTCAGACATTTTCATCTTTTAGGGAACGCCTTCATCACTTACAGAGAACCGAAAACGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGCCTATTTGCACGAAGAACTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGTGAACAAGTAAGGCGCAGCGTTGCCGATCTAAGGGAGGCGCGGTATAAATTAGAAAGGAAAGACTGCTATCTGTTCAAAATTAGTGAAGAGGTGGTAGTTGATGCAACTGATAAAGGAAATATTGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTCATGATGAGAGCCGGATCGCCCTCATTGCCAAGACTAACGTATCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCTTGTTTGTGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAG
Protein sequence

>Msa0104230

MPSRFNDSVIVNWRKDGKNNAAATSAGAAATSFREFEFEKFEDFGLKKCNGKGKNGTGNGTGRGRGYSELCEEVLHKNFGVAATSKEMSLREIFEETKARKKEPFWPAIVIDAMSQAPELVLRSCIADATCVMFLGYSRNDDHRDFAWVKYGMIFPFVENVDRFQEQSELSYCDPSQFQVAVEEAFLADQGFVEKLTEDINAVAGNNGCSDDSIIKSFQKVTASNQKKLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSHPKIKVMCKCDFCGTEKQALSEWERHTGSKFRNWKTSIQVKGSMISLEQWMLQLADFHAKVVVSSVKPKRPSSKERKHKLLTFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKLHSSEKNGKQTTRMVCYCAYHRAPNPDTVLIIQTPHGVISTKILIQNKRKVGSRLISSNRIKVEDTPPEDNTEHDPFSAARCRVFVRTNHTKSPTLLRYLAFVVIVRLGSSPYILIRAADEAIPHKVRGHYHHPLDAIQRLNSSKVVDESQTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARRTIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN*