Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567340 | XP_013446814.1 | 94.708 | 359 | 16 | 2 | 1 | 359 | 1 | 356 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567340 | sp|A8KBE0|OXR1_XENTR | 39.181 | 171 | 100 | 3 | 167 | 336 | 702 | 869 | 2.41e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567340 | A0A072TUK2 | 94.708 | 359 | 16 | 2 | 1 | 359 | 1 | 356 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044330 | Msa0567340 | 0.812347 | 4.437016e-51 | -8.615850e-47 |
| Msa0065680 | Msa0567340 | -0.812934 | 3.301418e-51 | -8.615850e-47 |
| Msa0089820 | Msa0567340 | 0.801623 | 8.250327e-49 | -8.615850e-47 |
| Msa0109590 | Msa0567340 | 0.810885 | 9.226576e-51 | -8.615850e-47 |
| Msa0138020 | Msa0567340 | 0.805211 | 1.489544e-49 | -8.615850e-47 |
| Msa0160960 | Msa0567340 | 0.814782 | 1.292704e-51 | -8.615850e-47 |
| Msa0187490 | Msa0567340 | 0.810067 | 1.386108e-50 | -8.615850e-47 |
| Msa0187830 | Msa0567340 | 0.827567 | 1.456529e-54 | -8.615850e-47 |
| Msa0389390 | Msa0567340 | 0.803696 | 3.082540e-49 | -8.615850e-47 |
| Msa0394470 | Msa0567340 | 0.824571 | 7.511191e-54 | -8.615850e-47 |
| Msa0417330 | Msa0567340 | 0.812580 | 3.947411e-51 | -8.615850e-47 |
| Msa0432160 | Msa0567340 | 0.804959 | 1.681723e-49 | -8.615850e-47 |
| Msa0435690 | Msa0567340 | 0.806829 | 6.802676e-50 | -8.615850e-47 |
| Msa0476680 | Msa0567340 | 0.807992 | 3.854157e-50 | -8.615850e-47 |
| Msa0482180 | Msa0567340 | 0.813571 | 2.392844e-51 | -8.615850e-47 |
| Msa0271770 | Msa0567340 | 0.803543 | 3.316350e-49 | -8.615850e-47 |
| Msa0278580 | Msa0567340 | 0.816705 | 4.817995e-52 | -8.615850e-47 |
| Msa0296820 | Msa0567340 | 0.820807 | 5.642222e-53 | -8.615850e-47 |
| Msa0317960 | Msa0567340 | 0.803908 | 2.785386e-49 | -8.615850e-47 |
| Msa0320430 | Msa0567340 | 0.806091 | 9.733200e-50 | -8.615850e-47 |
| Msa0336310 | Msa0567340 | 0.802306 | 5.973441e-49 | -8.615850e-47 |
| Msa0340710 | Msa0567340 | 0.809736 | 1.632833e-50 | -8.615850e-47 |
| Msa0347750 | Msa0567340 | 0.827582 | 1.444915e-54 | -8.615850e-47 |
| Msa0357830 | Msa0567340 | 0.807285 | 5.447751e-50 | -8.615850e-47 |
| Msa0357840 | Msa0567340 | 0.802474 | 5.515287e-49 | -8.615850e-47 |
| Msa0482940 | Msa0567340 | 0.803846 | 2.868431e-49 | -8.615850e-47 |
| Msa0485490 | Msa0567340 | 0.828134 | 1.064231e-54 | -8.615850e-47 |
| Msa0521010 | Msa0567340 | 0.806366 | 8.519774e-50 | -8.615850e-47 |
| Msa0532930 | Msa0567340 | 0.814090 | 1.838929e-51 | -8.615850e-47 |
| Msa0549780 | Msa0567340 | 0.800184 | 1.623347e-48 | -8.615850e-47 |
| Msa0567340 | Msa0614900 | 0.800289 | 1.545446e-48 | -8.615850e-47 |
| Msa0567340 | Msa0624960 | 0.806506 | 7.958061e-50 | -8.615850e-47 |
| Msa0567340 | Msa0664970 | 0.801890 | 7.274429e-49 | -8.615850e-47 |
| Msa0567340 | Msa0667740 | 0.813500 | 2.480114e-51 | -8.615850e-47 |
| Msa0567340 | Msa0689780 | 0.820135 | 8.050077e-53 | -8.615850e-47 |
| Msa0567340 | Msa0703780 | 0.831747 | 1.400712e-55 | -8.615850e-47 |
| Msa0567340 | Msa0705190 | 0.819571 | 1.083041e-52 | -8.615850e-47 |
| Msa0567340 | Msa0711150 | 0.843355 | 1.474535e-58 | -8.615850e-47 |
| Msa0567340 | Msa0715410 | 0.828046 | 1.117704e-54 | -8.615850e-47 |
| Msa0567340 | Msa0750850 | 0.816553 | 5.210482e-52 | -8.615850e-47 |
| Msa0567340 | Msa0756380 | 0.812444 | 4.227124e-51 | -8.615850e-47 |
| Msa0567340 | Msa0817460 | 0.804900 | 1.730429e-49 | -8.615850e-47 |
| Msa0567340 | Msa0822500 | 0.811227 | 7.778822e-51 | -8.615850e-47 |
| Msa0567340 | Msa0830230 | 0.823038 | 1.717375e-53 | -8.615850e-47 |
| Msa0567340 | Msa0844110 | 0.802455 | 5.564862e-49 | -8.615850e-47 |
| Msa0567340 | Msa0861470 | 0.826076 | 3.307728e-54 | -8.615850e-47 |
| Msa0567340 | Msa0861570 | 0.816730 | 4.755747e-52 | -8.615850e-47 |
| Msa0567340 | Msa0888260 | 0.806900 | 6.571279e-50 | -8.615850e-47 |
| Msa0567340 | Msa0894710 | 0.800654 | 1.302088e-48 | -8.615850e-47 |
| Msa0567340 | Msa0902830 | 0.800716 | 1.264655e-48 | -8.615850e-47 |
| Msa0567340 | Msa0939110 | 0.807218 | 5.627374e-50 | -8.615850e-47 |
| Msa0567340 | Msa0960390 | 0.819457 | 1.150040e-52 | -8.615850e-47 |
| Msa0567340 | Msa0960740 | 0.818469 | 1.928623e-52 | -8.615850e-47 |
| Msa0567340 | Msa0994370 | 0.824283 | 8.776710e-54 | -8.615850e-47 |
| Msa0567340 | Msa0994910 | 0.802575 | 5.256896e-49 | -8.615850e-47 |
| Msa0567340 | Msa1063420 | 0.800547 | 1.369109e-48 | -8.615850e-47 |
| Msa0567340 | Msa1071320 | 0.819021 | 1.444982e-52 | -8.615850e-47 |
| Msa0567340 | Msa1076960 | 0.810902 | 9.148643e-51 | -8.615850e-47 |
| Msa0567340 | Msa1089460 | 0.815656 | 8.265273e-52 | -8.615850e-47 |
| Msa0567340 | Msa1111870 | 0.814962 | 1.179028e-51 | -8.615850e-47 |
| Msa0567340 | Msa1122860 | 0.804352 | 2.251701e-49 | -8.615850e-47 |
| Msa0567340 | Msa1200250 | 0.807973 | 3.890095e-50 | -8.615850e-47 |
| Msa0567340 | Msa1207310 | 0.820476 | 6.722674e-53 | -8.615850e-47 |
| Msa0567340 | Msa1221330 | 0.804213 | 2.406167e-49 | -8.615850e-47 |
| Msa0567340 | Msa1225100 | 0.811320 | 7.425606e-51 | -8.615850e-47 |
| Msa0567340 | Msa1243870 | 0.809981 | 1.446329e-50 | -8.615850e-47 |
| Msa0567340 | Msa1270660 | 0.816727 | 4.765114e-52 | -8.615850e-47 |
| Msa0567340 | Msa1270730 | 0.804211 | 2.408411e-49 | -8.615850e-47 |
| Msa0567340 | Msa1305810 | 0.800036 | 1.740194e-48 | -8.615850e-47 |
| Msa0567340 | Msa1329870 | 0.812080 | 5.076442e-51 | -8.615850e-47 |
| Msa0567340 | Msa1335230 | 0.804336 | 2.268673e-49 | -8.615850e-47 |
| Msa0567340 | Msa1355890 | 0.832734 | 7.982323e-56 | -8.615850e-47 |
| Msa0567340 | Msa1358670 | 0.817989 | 2.476206e-52 | -8.615850e-47 |
| Msa0567340 | Msa1370590 | 0.803391 | 3.564242e-49 | -8.615850e-47 |
| Msa0567340 | Msa1380220 | 0.828198 | 1.027446e-54 | -8.615850e-47 |
| Msa0567340 | Msa1382790 | 0.801740 | 7.808560e-49 | -8.615850e-47 |
| Msa0567340 | Msa1384100 | 0.802017 | 6.847488e-49 | -8.615850e-47 |
| Msa0567340 | Msa1405220 | 0.807539 | 4.811694e-50 | -8.615850e-47 |
| Msa0567340 | Msa1407800 | 0.845588 | 3.697992e-59 | -8.615850e-47 |
| Msa0567340 | Msa1418850 | 0.811717 | 6.088144e-51 | -8.615850e-47 |
| Msa0567340 | Msa1420270 | 0.813710 | 2.230507e-51 | -8.615850e-47 |
| Msa0567340 | Msa1428780 | 0.801247 | 9.850136e-49 | -8.615850e-47 |
| Msa0567340 | Msa1437730 | 0.803308 | 3.709715e-49 | -8.615850e-47 |
| Msa0567340 | Msa1437770 | 0.832830 | 7.555805e-56 | -8.615850e-47 |
| Msa0567340 | Msa1444120 | 0.800221 | 1.595691e-48 | -8.615850e-47 |
| Msa0567340 | Msa1444260 | 0.812917 | 3.330921e-51 | -8.615850e-47 |
| Msa0567340 | Msa1457160 | 0.819479 | 1.136534e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567340 | MtrunA17_Chr8g0382261 | 94.708 | 359 | 16 | 2 | 1 | 359 | 1 | 356 | 0.0 | 662 |
| Msa0567340 | MtrunA17_Chr3g0124001 | 58.442 | 385 | 121 | 11 | 1 | 359 | 1 | 372 | 9.46e-140 | 401 |
| Msa0567340 | MtrunA17_Chr1g0186161 | 56.395 | 172 | 75 | 0 | 166 | 337 | 137 | 308 | 1.23e-62 | 202 |
| Msa0567340 | MtrunA17_Chr1g0168381 | 61.017 | 59 | 23 | 0 | 275 | 333 | 12 | 70 | 7.86e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567340 | AT4G39870.2 | 48.762 | 404 | 151 | 8 | 1 | 359 | 1 | 393 | 1.17e-118 | 349 |
| Msa0567340 | AT4G39870.1 | 48.762 | 404 | 151 | 8 | 1 | 359 | 1 | 393 | 1.17e-118 | 349 |
| Msa0567340 | AT2G05590.2 | 55.000 | 180 | 81 | 0 | 163 | 342 | 122 | 301 | 5.53e-69 | 219 |
| Msa0567340 | AT2G05590.1 | 54.930 | 142 | 64 | 0 | 163 | 304 | 122 | 263 | 1.35e-52 | 175 |
| Msa0567340 | AT5G06260.1 | 28.931 | 159 | 100 | 5 | 196 | 344 | 237 | 392 | 7.87e-14 | 72.8 |
| Msa0567340 | AT5G06260.2 | 28.931 | 159 | 100 | 5 | 196 | 344 | 173 | 328 | 7.90e-14 | 72.4 |
| Msa0567340 | AT5G06260.3 | 28.931 | 159 | 100 | 5 | 196 | 344 | 148 | 303 | 1.20e-13 | 71.6 |
Find 119 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATGCGTTGCATACTTAA+AGG | 0.172299 | 4_1:+68714139 | Msa0567340:three_prime_UTR |
| ACTTCCTTCACTTGAAATTC+TGG | 0.230950 | 4_1:-68713609 | None:intergenic |
| GGTTTGTTATGGTCAGAAAT+AGG | 0.233665 | 4_1:-68710521 | None:intergenic |
| GGTAGATGATGATGAGTTAA+AGG | 0.279770 | 4_1:+68710675 | Msa0567340:CDS |
| TAGATTATGAATTATGATAA+AGG | 0.297309 | 4_1:+68710316 | Msa0567340:five_prime_UTR |
| AGTTCGGTTTCCGAAACTTA+TGG | 0.320071 | 4_1:+68713564 | Msa0567340:CDS |
| TATCACTTTCAACTCTTTAC+CGG | 0.326685 | 4_1:+68711284 | Msa0567340:CDS |
| GCACTTCCGGCTTTAATTCA+TGG | 0.329830 | 4_1:+68711111 | Msa0567340:CDS |
| ACATGCTTGTAAATATTTGC+AGG | 0.331389 | 4_1:+68714043 | Msa0567340:three_prime_UTR |
| CAACCAATTTCTCATTCATT+TGG | 0.340463 | 4_1:-68710837 | None:intergenic |
| TCAAGAAGGGATTGTTATCT+AGG | 0.341466 | 4_1:+68710860 | Msa0567340:CDS |
| GTTTGTTATGGTCAGAAATA+GGG | 0.345242 | 4_1:-68710520 | None:intergenic |
| TGCGGTTTATGATGCACTTC+CGG | 0.349970 | 4_1:+68711098 | Msa0567340:CDS |
| TTGGCCTGGACCTAGTTTGC+TGG | 0.351025 | 4_1:+68711318 | Msa0567340:CDS |
| TGATCATTTGCCGGAAATAT+CGG | 0.357645 | 4_1:+68711041 | Msa0567340:CDS |
| CAAAGCAGTTCACCTTGTTT+CGG | 0.358183 | 4_1:+68710475 | Msa0567340:CDS |
| ACAAGGATTGCCATAAGTTT+CGG | 0.368495 | 4_1:-68713574 | None:intergenic |
| TGACCAAATGAATGAGAAAT+TGG | 0.373689 | 4_1:+68710834 | Msa0567340:CDS |
| CTTTAATTCATGGGAAGAAA+TGG | 0.380374 | 4_1:+68711121 | Msa0567340:CDS |
| ATTGAAGGTTCCGATATTTC+CGG | 0.382091 | 4_1:-68711051 | None:intergenic |
| CATATCAACTCAAGATTGAA+TGG | 0.382180 | 4_1:+68713537 | Msa0567340:intron |
| AGATTATGAATTATGATAAA+GGG | 0.382482 | 4_1:+68710317 | Msa0567340:five_prime_UTR |
| AGGAGCAGTGTTTGGTGGCT+TGG | 0.413328 | 4_1:+68712152 | Msa0567340:CDS |
| AGAGGTTCCTAGTGTGCCTT+TGG | 0.414757 | 4_1:+68711014 | Msa0567340:CDS |
| TAATGACGGTGAGGGAATAT+AGG | 0.417137 | 4_1:+68710344 | Msa0567340:five_prime_UTR |
| AAGTTTCGTGCCTCAACAAC+CGG | 0.428754 | 4_1:+68710224 | Msa0567340:five_prime_UTR |
| TTTGGTTGTTGATCATTTGC+CGG | 0.432855 | 4_1:+68711032 | Msa0567340:CDS |
| TGTTGATTTCAAATAGTTTG+AGG | 0.435731 | 4_1:+68711073 | Msa0567340:CDS |
| GACCGAAAAGGAGCAGTGTT+TGG | 0.438263 | 4_1:+68712144 | Msa0567340:CDS |
| CTATTTGAAATCAACATTGA+AGG | 0.441509 | 4_1:-68711066 | None:intergenic |
| CTTTGCAGCACATGGAAACA+TGG | 0.442796 | 4_1:+68711259 | Msa0567340:intron |
| GCAGTAAACGACGACGTATC+AGG | 0.445057 | 4_1:-68710721 | None:intergenic |
| ACCACTGACTTTCTAGCGAT+TGG | 0.446127 | 4_1:+68713371 | Msa0567340:CDS |
| TTCTCTTGTTGGATGGTCGA+AGG | 0.447351 | 4_1:-68712185 | None:intergenic |
| AAGATTGAATGGGTCAAGTT+CGG | 0.451165 | 4_1:+68713548 | Msa0567340:intron |
| TGAGAAATTGGTTGTCAAGA+AGG | 0.453693 | 4_1:+68710846 | Msa0567340:CDS |
| TTTACCGGAGAAGTATGCTT+TGG | 0.460274 | 4_1:+68711299 | Msa0567340:CDS |
| CAGGTTGTTGGAGACCGAAA+AGG | 0.462680 | 4_1:+68712132 | Msa0567340:intron |
| TTGCATGTTCAGTGTCAAAC+TGG | 0.464030 | 4_1:-68710109 | None:intergenic |
| CTGAGTCATCATCGGTCACT+CGG | 0.465381 | 4_1:-68710165 | None:intergenic |
| AATTATTGTTTAGGAAGAAA+AGG | 0.466326 | 4_1:+68710654 | Msa0567340:intron |
| TGAAATTGTACCAGCAAACT+AGG | 0.469728 | 4_1:-68711328 | None:intergenic |
| CGGAGAAGTATGCTTTGGCC+TGG | 0.471135 | 4_1:+68711304 | Msa0567340:CDS |
| GATAAGATTGTGACTGCAGC+TGG | 0.474335 | 4_1:+68710802 | Msa0567340:CDS |
| AGAAATGGTTAATGATGTAC+AGG | 0.474691 | 4_1:+68711136 | Msa0567340:CDS |
| AGTTCATACCCATTACAAAA+TGG | 0.475573 | 4_1:+68714084 | Msa0567340:three_prime_UTR |
| CACTTCCGGCTTTAATTCAT+GGG | 0.478819 | 4_1:+68711112 | Msa0567340:CDS |
| CCTGTCGTATATCGCCCAAC+AGG | 0.479602 | 4_1:+68712359 | Msa0567340:CDS |
| CAAGAAGGGATTGTTATCTA+GGG | 0.481467 | 4_1:+68710861 | Msa0567340:CDS |
| TCTCTTGTTGGATGGTCGAA+GGG | 0.489291 | 4_1:-68712184 | None:intergenic |
| ACTGACTTTCTAGCGATTGG+TGG | 0.489834 | 4_1:+68713374 | Msa0567340:CDS |
| TCCCTTTCACGATCTTGTGT+TGG | 0.491614 | 4_1:-68710934 | None:intergenic |
| GAGAAATTGGTTGTCAAGAA+GGG | 0.491672 | 4_1:+68710847 | Msa0567340:CDS |
| GACTTTCTAGCGATTGGTGG+GGG | 0.501174 | 4_1:+68713377 | Msa0567340:CDS |
| ATTTATCTATCTGCTAGAAC+GGG | 0.507739 | 4_1:+68710904 | Msa0567340:CDS |
| GAGGACGAGAGGGTTTGTTA+TGG | 0.508533 | 4_1:-68710532 | None:intergenic |
| TTCTCCAGAATTTCAAGTGA+AGG | 0.510211 | 4_1:+68713605 | Msa0567340:CDS |
| GGGATAGATTTGAGTCTGAT+GGG | 0.512274 | 4_1:+68710953 | Msa0567340:CDS |
| TATTTATCTATCTGCTAGAA+CGG | 0.513283 | 4_1:+68710903 | Msa0567340:CDS |
| TTGAGCAAAACAGAGGCACC+TGG | 0.517709 | 4_1:+68713839 | Msa0567340:CDS |
| AGGGATAGATTTGAGTCTGA+TGG | 0.519127 | 4_1:+68710952 | Msa0567340:CDS |
| CTTTCCTCCATGCAGTTGTG+GGG | 0.519234 | 4_1:+68713779 | Msa0567340:intron |
| TTCCAACACAAGATCGTGAA+AGG | 0.521427 | 4_1:+68710932 | Msa0567340:CDS |
| AGGCACCTGGGATCTCTCGC+TGG | 0.521785 | 4_1:+68713852 | Msa0567340:CDS |
| GGTGTTGATGATTATGCTGC+CGG | 0.521825 | 4_1:-68710261 | None:intergenic |
| AATTGCAATTTCTGCTAGCA+AGG | 0.522215 | 4_1:+68713955 | Msa0567340:three_prime_UTR |
| TTCTTCCCATGAATTAAAGC+CGG | 0.528712 | 4_1:-68711117 | None:intergenic |
| CTGACTTTCTAGCGATTGGT+GGG | 0.531876 | 4_1:+68713375 | Msa0567340:CDS |
| ATTGTGACTGCAGCTGGAGC+TGG | 0.535852 | 4_1:+68710808 | Msa0567340:CDS |
| TGATAAAGGGATTGTAATGA+CGG | 0.536835 | 4_1:+68710330 | Msa0567340:five_prime_UTR |
| CGAAAAGGAGCAGTGTTTGG+TGG | 0.540629 | 4_1:+68712147 | Msa0567340:CDS |
| ACCGGAAAACGCTTCTACAC+CGG | 0.545063 | 4_1:+68710242 | Msa0567340:five_prime_UTR |
| ATATTTACAAGCATGTTACA+TGG | 0.546363 | 4_1:-68714036 | None:intergenic |
| AATTGAGAACTTACTATGGA+AGG | 0.547869 | 4_1:-68710554 | None:intergenic |
| ATATCAACTCAAGATTGAAT+GGG | 0.549497 | 4_1:+68713538 | Msa0567340:intron |
| AGATTTGAGTCTGATGGGTG+TGG | 0.549958 | 4_1:+68710958 | Msa0567340:CDS |
| TGTATTTCCTTCAAAACATG+AGG | 0.552112 | 4_1:+68713805 | Msa0567340:CDS |
| TTCAAATAGTTTGAGGAATG+CGG | 0.552777 | 4_1:+68711080 | Msa0567340:CDS |
| CAGGCCAAAGCATACTTCTC+CGG | 0.555164 | 4_1:-68711303 | None:intergenic |
| TCAACAACCAAAGGCACACT+AGG | 0.555535 | 4_1:-68711021 | None:intergenic |
| GAAAGTGAATCAGAGATTGA+AGG | 0.560111 | 4_1:+68710697 | Msa0567340:CDS |
| CTCTTGTTGGATGGTCGAAG+GGG | 0.562431 | 4_1:-68712183 | None:intergenic |
| TGAGTCTGATGGGTGTGGTG+TGG | 0.567048 | 4_1:+68710963 | Msa0567340:CDS |
| CATGTTACATGGTGATAACA+TGG | 0.568306 | 4_1:-68714025 | None:intergenic |
| TGTACCAGCAAACTAGGTCC+AGG | 0.570453 | 4_1:-68711322 | None:intergenic |
| CATGCTTGTAAATATTTGCA+GGG | 0.571962 | 4_1:+68714044 | Msa0567340:three_prime_UTR |
| GCATACTTAAAGGAAAATGA+AGG | 0.574641 | 4_1:+68714149 | Msa0567340:three_prime_UTR |
| TTTGCAGCACATGGAAACAT+GGG | 0.579278 | 4_1:+68711260 | Msa0567340:intron |
| ATTTCAAGTGAAGGAAGTAG+AGG | 0.579766 | 4_1:+68713614 | Msa0567340:CDS |
| TCCAACACAAGATCGTGAAA+GGG | 0.580137 | 4_1:+68710933 | Msa0567340:CDS |
| TATCTATCTGCTAGAACGGG+TGG | 0.584754 | 4_1:+68710907 | Msa0567340:CDS |
| AGGGATTGTAATGACGGTGA+GGG | 0.585410 | 4_1:+68710336 | Msa0567340:five_prime_UTR |
| ATCCAACAAGAGAAAATACC+AGG | 0.596747 | 4_1:+68712194 | Msa0567340:CDS |
| AAGGGATTGTAATGACGGTG+AGG | 0.597285 | 4_1:+68710335 | Msa0567340:five_prime_UTR |
| CAGTGGTGAGATCCGAAACA+AGG | 0.598925 | 4_1:-68710487 | None:intergenic |
| TGGTGCAAAGTGTGAAGTAA+CGG | 0.599281 | 4_1:-68713352 | None:intergenic |
| ATTTACCAGCGAGAGATCCC+AGG | 0.600370 | 4_1:-68713857 | None:intergenic |
| TGACTTTCTAGCGATTGGTG+GGG | 0.600382 | 4_1:+68713376 | Msa0567340:CDS |
| ATTGCAATTTCTGCTAGCAA+GGG | 0.601315 | 4_1:+68713956 | Msa0567340:three_prime_UTR |
| TGACACTGAACATGCAAACA+AGG | 0.602248 | 4_1:+68710115 | Msa0567340:five_prime_UTR |
| CCTGTTGGGCGATATACGAC+AGG | 0.602267 | 4_1:-68712359 | None:intergenic |
| GGCAAATGATCAACAACCAA+AGG | 0.615389 | 4_1:-68711030 | None:intergenic |
| AAATGAGTCACAAAATGATG+TGG | 0.619732 | 4_1:-68714176 | None:intergenic |
| TGAGCAAAACAGAGGCACCT+GGG | 0.621947 | 4_1:+68713840 | Msa0567340:CDS |
| TCAGTAAAATGCGAACTGCA+AGG | 0.623392 | 4_1:-68713910 | None:intergenic |
| TCTGGAGAATGTGCTAAACA+AGG | 0.634055 | 4_1:-68713591 | None:intergenic |
| ACTATGGAAGGAGGACGAGA+GGG | 0.634975 | 4_1:-68710542 | None:intergenic |
| TACTATGGAAGGAGGACGAG+AGG | 0.638442 | 4_1:-68710543 | None:intergenic |
| ACTAAAATTGAGCAAAACAG+AGG | 0.638548 | 4_1:+68713832 | Msa0567340:CDS |
| ACCAATCGCTAGAAAGTCAG+TGG | 0.645879 | 4_1:-68713372 | None:intergenic |
| AAGAAGGGATTGTTATCTAG+GGG | 0.664052 | 4_1:+68710862 | Msa0567340:CDS |
| TGAGAACTTACTATGGAAGG+AGG | 0.668946 | 4_1:-68710551 | None:intergenic |
| CTAGGAACCTCTTTCAACGG+CGG | 0.671472 | 4_1:-68711003 | None:intergenic |
| ACACTAGGAACCTCTTTCAA+CGG | 0.680780 | 4_1:-68711006 | None:intergenic |
| AATAGGGTTGAGAAGAACAG+TGG | 0.691115 | 4_1:-68710504 | None:intergenic |
| TTACATGGTGATAACATGGG+TGG | 0.696576 | 4_1:-68714021 | None:intergenic |
| AGTCATCATCGGTCACTCGG+CGG | 0.705390 | 4_1:-68710162 | None:intergenic |
| ATGTTACATGGTGATAACAT+GGG | 0.733161 | 4_1:-68714024 | None:intergenic |
| ATTATCTCTAGAATCCGACG+AGG | 0.791211 | 4_1:-68710767 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAAAAAATAATTAAA+CGG | + | chr4_1:68710374-68710393 | Msa0567340:five_prime_UTR | 0.0% |
| !! | TGTATATTAAATTATTGTTT+AGG | + | chr4_1:68710645-68710664 | Msa0567340:intron | 10.0% |
| !!! | TTTTAATTTTAAATGAAGTA+TGG | + | chr4_1:68713035-68713054 | Msa0567340:intron | 10.0% |
| !!! | ATTTTGTTTAGAATAAAAAT+TGG | + | chr4_1:68714110-68714129 | Msa0567340:three_prime_UTR | 10.0% |
| !! | TAGATTATGAATTATGATAA+AGG | + | chr4_1:68710316-68710335 | Msa0567340:five_prime_UTR | 15.0% |
| !! | AGATTATGAATTATGATAAA+GGG | + | chr4_1:68710317-68710336 | Msa0567340:five_prime_UTR | 15.0% |
| !! | ATTAAAAAATAATTAAACGG+TGG | + | chr4_1:68710377-68710396 | Msa0567340:five_prime_UTR | 15.0% |
| !!! | TTTTTTCTATTCCTATTTTT+AGG | - | chr4_1:68710426-68710445 | None:intergenic | 15.0% |
| !! | ACTGTAATTTATTGAATATA+TGG | + | chr4_1:68711604-68711623 | Msa0567340:intron | 15.0% |
| !! | TGTATTACTAAATCAATAAT+AGG | + | chr4_1:68712499-68712518 | Msa0567340:intron | 15.0% |
| !! | ATTATAGAAAGAAAAAATCT+GGG | + | chr4_1:68713252-68713271 | Msa0567340:intron | 15.0% |
| !! | GATGATATTATAATTATAGA+GGG | - | chr4_1:68713486-68713505 | None:intergenic | 15.0% |
| !! | TGATGATATTATAATTATAG+AGG | - | chr4_1:68713487-68713506 | None:intergenic | 15.0% |
| !! | AATTGCAACAAAAAAAAATT+AGG | - | chr4_1:68713511-68713530 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTGCAATTTT+TGG | + | chr4_1:68713513-68713532 | Msa0567340:intron | 15.0% |
| !!! | GTAATAATAAAAAGAGGTTT+TGG | - | chr4_1:68710285-68710304 | None:intergenic | 20.0% |
| !! | GTTGTTGTAATAATAAAAAG+AGG | - | chr4_1:68710291-68710310 | None:intergenic | 20.0% |
| !!! | TATTCCTATTTTTAGGAATT+AGG | - | chr4_1:68710419-68710438 | None:intergenic | 20.0% |
| !! | ATAGGAATAGAAAAAAGAAA+TGG | + | chr4_1:68710430-68710449 | Msa0567340:exon | 20.0% |
| !! | TAGGAATAGAAAAAAGAAAT+GGG | + | chr4_1:68710431-68710450 | Msa0567340:exon | 20.0% |
| !! | AATTATTGTTTAGGAAGAAA+AGG | + | chr4_1:68710654-68710673 | Msa0567340:intron | 20.0% |
| !! | AAATAGCTAACAATACATTA+AGG | - | chr4_1:68712107-68712126 | None:intergenic | 20.0% |
| !! | AAAATTAACATTGTTGCAAA+GGG | - | chr4_1:68712259-68712278 | None:intergenic | 20.0% |
| !! | TAAAATTAACATTGTTGCAA+AGG | - | chr4_1:68712260-68712279 | None:intergenic | 20.0% |
| !!! | AATTATCAGTTTTAATGACA+TGG | + | chr4_1:68712628-68712647 | Msa0567340:intron | 20.0% |
| !!! | TTTTTCTTTCTATAATCATG+TGG | - | chr4_1:68713248-68713267 | None:intergenic | 20.0% |
| !! | GATTATAGAAAGAAAAAATC+TGG | + | chr4_1:68713251-68713270 | Msa0567340:intron | 20.0% |
| !!! | ATGATTTGTTTGATGAAAAA+AGG | - | chr4_1:68713456-68713475 | None:intergenic | 20.0% |
| !! | ATATTATAATTATAGAGGGA+AGG | - | chr4_1:68713482-68713501 | None:intergenic | 20.0% |
| !!! | AAAATAGACCATTTTGTAAT+GGG | - | chr4_1:68714095-68714114 | None:intergenic | 20.0% |
| ! | GATTCCTAATTCCTAAAAAT+AGG | + | chr4_1:68710412-68710431 | Msa0567340:five_prime_UTR | 25.0% |
| ! | AGGAATAGAAAAAAGAAATG+GGG | + | chr4_1:68710432-68710451 | Msa0567340:exon | 25.0% |
| ! | TGCAATTAAAGCTATAATCT+AGG | - | chr4_1:68710582-68710601 | None:intergenic | 25.0% |
| ! | TATTTATCTATCTGCTAGAA+CGG | + | chr4_1:68710903-68710922 | Msa0567340:CDS | 25.0% |
| !! | CTATTTGAAATCAACATTGA+AGG | - | chr4_1:68711069-68711088 | None:intergenic | 25.0% |
| !!! | TGTTGATTTCAAATAGTTTG+AGG | + | chr4_1:68711073-68711092 | Msa0567340:CDS | 25.0% |
| ! | AAAGTAAGAAAGAACAAACA+TGG | - | chr4_1:68711378-68711397 | None:intergenic | 25.0% |
| !! | TAGACAATTTGATAATCTCT+AGG | + | chr4_1:68711400-68711419 | Msa0567340:intron | 25.0% |
| !! | AGACAATTTGATAATCTCTA+GGG | + | chr4_1:68711401-68711420 | Msa0567340:intron | 25.0% |
| ! | AATGGAACAAAAATATGTGT+AGG | - | chr4_1:68711658-68711677 | None:intergenic | 25.0% |
| ! | ATCTATAGCTCAATTCTAAA+TGG | - | chr4_1:68711676-68711695 | None:intergenic | 25.0% |
| ! | CAACATGGTCTATTATTAAA+TGG | - | chr4_1:68711747-68711766 | None:intergenic | 25.0% |
| ! | CATTTAATAATAGACCATGT+TGG | + | chr4_1:68711745-68711764 | Msa0567340:intron | 25.0% |
| ! | TTGTAATTAATAGTAGCACA+CGG | + | chr4_1:68711927-68711946 | Msa0567340:intron | 25.0% |
| ! | TTCTCTTTGCAGATTAAAAT+TGG | - | chr4_1:68712022-68712041 | None:intergenic | 25.0% |
| !!! | ATTGTTAGCTATTTTTTTCC+AGG | + | chr4_1:68712113-68712132 | Msa0567340:intron | 25.0% |
| !! | TGTTGACATAAATTTTGTAC+AGG | + | chr4_1:68712295-68712314 | Msa0567340:intron | 25.0% |
| !! | GTTGACATAAATTTTGTACA+GGG | + | chr4_1:68712296-68712315 | Msa0567340:intron | 25.0% |
| ! | AAAAAAGAGATATACCTGTT+GGG | - | chr4_1:68712376-68712395 | None:intergenic | 25.0% |
| ! | AAAAAAAGAGATATACCTGT+TGG | - | chr4_1:68712377-68712396 | None:intergenic | 25.0% |
| !!! | CTTTTGTTGTCATAGTTATA+CGG | + | chr4_1:68712428-68712447 | Msa0567340:intron | 25.0% |
| !! | TTTCCTTTTACAAAACTATG+TGG | + | chr4_1:68712564-68712583 | Msa0567340:intron | 25.0% |
| !! | TTTTCAAACCCAAAAAATGA+GGG | - | chr4_1:68712774-68712793 | None:intergenic | 25.0% |
| !!! | TTTTTCAAACCCAAAAAATG+AGG | - | chr4_1:68712775-68712794 | None:intergenic | 25.0% |
| !! | CTAGATATAATTTTACCTCA+AGG | + | chr4_1:68712941-68712960 | Msa0567340:intron | 25.0% |
| ! | ATCTTAATGTACTGTTAGAA+AGG | + | chr4_1:68712971-68712990 | Msa0567340:intron | 25.0% |
| !! | ATATTGCATCATCTTTTTGT+GGG | - | chr4_1:68713101-68713120 | None:intergenic | 25.0% |
| !! | AATATTGCATCATCTTTTTG+TGG | - | chr4_1:68713102-68713121 | None:intergenic | 25.0% |
| ! | ATATCAACTCAAGATTGAAT+GGG | + | chr4_1:68713538-68713557 | Msa0567340:intron | 25.0% |
| ! | AAATGTTTCGTACATCAATA+AGG | - | chr4_1:68713732-68713751 | None:intergenic | 25.0% |
| ! | ATATTTACAAGCATGTTACA+TGG | - | chr4_1:68714039-68714058 | None:intergenic | 25.0% |
| !! | CAAAATAGACCATTTTGTAA+TGG | - | chr4_1:68714096-68714115 | None:intergenic | 25.0% |
| TGATAAAGGGATTGTAATGA+CGG | + | chr4_1:68710330-68710349 | Msa0567340:five_prime_UTR | 30.0% | |
| !! | GTTTGTTATGGTCAGAAATA+GGG | - | chr4_1:68710523-68710542 | None:intergenic | 30.0% |
| AATTGAGAACTTACTATGGA+AGG | - | chr4_1:68710557-68710576 | None:intergenic | 30.0% | |
| GGTTAATTGAGAACTTACTA+TGG | - | chr4_1:68710561-68710580 | None:intergenic | 30.0% | |
| TGACCAAATGAATGAGAAAT+TGG | + | chr4_1:68710834-68710853 | Msa0567340:CDS | 30.0% | |
| CAACCAATTTCTCATTCATT+TGG | - | chr4_1:68710840-68710859 | None:intergenic | 30.0% | |
| ATTTATCTATCTGCTAGAAC+GGG | + | chr4_1:68710904-68710923 | Msa0567340:CDS | 30.0% | |
| TTCAAATAGTTTGAGGAATG+CGG | + | chr4_1:68711080-68711099 | Msa0567340:CDS | 30.0% | |
| CTTTAATTCATGGGAAGAAA+TGG | + | chr4_1:68711121-68711140 | Msa0567340:CDS | 30.0% | |
| AGAAATGGTTAATGATGTAC+AGG | + | chr4_1:68711136-68711155 | Msa0567340:CDS | 30.0% | |
| ! | TAATGATGTACAGGTAGTTT+TGG | + | chr4_1:68711145-68711164 | Msa0567340:intron | 30.0% |
| ! | TTTTGGATTAAGGCTTTTGA+AGG | + | chr4_1:68711162-68711181 | Msa0567340:intron | 30.0% |
| TATCACTTTCAACTCTTTAC+CGG | + | chr4_1:68711284-68711303 | Msa0567340:CDS | 30.0% | |
| TTATTTAAATACCCGACATG+AGG | + | chr4_1:68711495-68711514 | Msa0567340:intron | 30.0% | |
| ! | AGAAGCTAAGAAACAACTTT+TGG | + | chr4_1:68711563-68711582 | Msa0567340:intron | 30.0% |
| ! | GAAGCTAAGAAACAACTTTT+GGG | + | chr4_1:68711564-68711583 | Msa0567340:intron | 30.0% |
| !!! | TAAGAAACAACTTTTGGGTT+TGG | + | chr4_1:68711569-68711588 | Msa0567340:intron | 30.0% |
| CCTTGCATAACAATAATATG+TGG | - | chr4_1:68711709-68711728 | None:intergenic | 30.0% | |
| CCACATATTATTGTTATGCA+AGG | + | chr4_1:68711706-68711725 | Msa0567340:intron | 30.0% | |
| TAAATCACTGTAAACCAACA+TGG | - | chr4_1:68711762-68711781 | None:intergenic | 30.0% | |
| CAATGTGATGAACATGAAAT+GGG | - | chr4_1:68711798-68711817 | None:intergenic | 30.0% | |
| TCAATGTGATGAACATGAAA+TGG | - | chr4_1:68711799-68711818 | None:intergenic | 30.0% | |
| TACAAAAATAAAACCAGACC+TGG | - | chr4_1:68712215-68712234 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCACAAACATCTC+TGG | + | chr4_1:68712332-68712351 | Msa0567340:CDS | 30.0% |
| !!! | CATCCACATAGTTTTGTAAA+AGG | - | chr4_1:68712570-68712589 | None:intergenic | 30.0% |
| TTTACAAAACTATGTGGATG+AGG | + | chr4_1:68712570-68712589 | Msa0567340:intron | 30.0% | |
| ! | AACATGATGCTTTTGTAACT+TGG | + | chr4_1:68712716-68712735 | Msa0567340:intron | 30.0% |
| ! | TTTGGGTTTGAAAAATCAGA+AGG | + | chr4_1:68712780-68712799 | Msa0567340:intron | 30.0% |
| GCAAATTGCAATATATCCTT+TGG | - | chr4_1:68712849-68712868 | None:intergenic | 30.0% | |
| TATATTGCAATTTGCCATTG+AGG | + | chr4_1:68712854-68712873 | Msa0567340:intron | 30.0% | |
| !! | ATTAAGATGAATTAGCCTTG+AGG | - | chr4_1:68712959-68712978 | None:intergenic | 30.0% |
| TAGAAAGAAAAAATCTGGGT+TGG | + | chr4_1:68713256-68713275 | Msa0567340:intron | 30.0% | |
| TGAATTAACCACAATATTGC+AGG | + | chr4_1:68713323-68713342 | Msa0567340:intron | 30.0% | |
| CATATCAACTCAAGATTGAA+TGG | + | chr4_1:68713537-68713556 | Msa0567340:intron | 30.0% | |
| TGTATTTCCTTCAAAACATG+AGG | + | chr4_1:68713805-68713824 | Msa0567340:CDS | 30.0% | |
| ACTAAAATTGAGCAAAACAG+AGG | + | chr4_1:68713832-68713851 | Msa0567340:CDS | 30.0% | |
| ATGTTACATGGTGATAACAT+GGG | - | chr4_1:68714027-68714046 | None:intergenic | 30.0% | |
| ACATGCTTGTAAATATTTGC+AGG | + | chr4_1:68714043-68714062 | Msa0567340:three_prime_UTR | 30.0% | |
| CATGCTTGTAAATATTTGCA+GGG | + | chr4_1:68714044-68714063 | Msa0567340:three_prime_UTR | 30.0% | |
| AGTTCATACCCATTACAAAA+TGG | + | chr4_1:68714084-68714103 | Msa0567340:three_prime_UTR | 30.0% | |
| TTTATGCGTTGCATACTTAA+AGG | + | chr4_1:68714139-68714158 | Msa0567340:three_prime_UTR | 30.0% | |
| GCATACTTAAAGGAAAATGA+AGG | + | chr4_1:68714149-68714168 | Msa0567340:three_prime_UTR | 30.0% | |
| AAATGAGTCACAAAATGATG+TGG | - | chr4_1:68714179-68714198 | None:intergenic | 30.0% | |
| TGGGGAAAAAGCAATCTTTA+CGG | + | chr4_1:68710450-68710469 | Msa0567340:CDS | 35.0% | |
| !! | GGTTTGTTATGGTCAGAAAT+AGG | - | chr4_1:68710524-68710543 | None:intergenic | 35.0% |
| ! | GGTAGATGATGATGAGTTAA+AGG | + | chr4_1:68710675-68710694 | Msa0567340:CDS | 35.0% |
| GAAAGTGAATCAGAGATTGA+AGG | + | chr4_1:68710697-68710716 | Msa0567340:CDS | 35.0% | |
| TGAGAAATTGGTTGTCAAGA+AGG | + | chr4_1:68710846-68710865 | Msa0567340:CDS | 35.0% | |
| GAGAAATTGGTTGTCAAGAA+GGG | + | chr4_1:68710847-68710866 | Msa0567340:CDS | 35.0% | |
| TCAAGAAGGGATTGTTATCT+AGG | + | chr4_1:68710860-68710879 | Msa0567340:CDS | 35.0% | |
| CAAGAAGGGATTGTTATCTA+GGG | + | chr4_1:68710861-68710880 | Msa0567340:CDS | 35.0% | |
| AAGAAGGGATTGTTATCTAG+GGG | + | chr4_1:68710862-68710881 | Msa0567340:CDS | 35.0% | |
| TTTGGTTGTTGATCATTTGC+CGG | + | chr4_1:68711032-68711051 | Msa0567340:CDS | 35.0% | |
| TGATCATTTGCCGGAAATAT+CGG | + | chr4_1:68711041-68711060 | Msa0567340:CDS | 35.0% | |
| ATTGAAGGTTCCGATATTTC+CGG | - | chr4_1:68711054-68711073 | None:intergenic | 35.0% | |
| TTCTTCCCATGAATTAAAGC+CGG | - | chr4_1:68711120-68711139 | None:intergenic | 35.0% | |
| !!! | GTACAGGTAGTTTTGGATTA+AGG | + | chr4_1:68711152-68711171 | Msa0567340:intron | 35.0% |
| TGAAATTGTACCAGCAAACT+AGG | - | chr4_1:68711331-68711350 | None:intergenic | 35.0% | |
| GATTGATAAATTGAGCTGCA+CGG | + | chr4_1:68711432-68711451 | Msa0567340:intron | 35.0% | |
| ATGAAATATGCACCTCATGT+CGG | - | chr4_1:68711510-68711529 | None:intergenic | 35.0% | |
| ACTGACATATGATTTCTGTC+TGG | + | chr4_1:68711629-68711648 | Msa0567340:intron | 35.0% | |
| CTGACATATGATTTCTGTCT+GGG | + | chr4_1:68711630-68711649 | Msa0567340:intron | 35.0% | |
| ! | ATCACATTGATGACTTCGTA+TGG | + | chr4_1:68711809-68711828 | Msa0567340:intron | 35.0% |
| !! | AGAGGGGTATTTCAAAAGTT+GGG | - | chr4_1:68711860-68711879 | None:intergenic | 35.0% |
| !! | AAGAGGGGTATTTCAAAAGT+TGG | - | chr4_1:68711861-68711880 | None:intergenic | 35.0% |
| ACAATATGCCATCAACAAGA+GGG | - | chr4_1:68711877-68711896 | None:intergenic | 35.0% | |
| TACAATATGCCATCAACAAG+AGG | - | chr4_1:68711878-68711897 | None:intergenic | 35.0% | |
| ACCAATAAGCTTGCAAACAT+GGG | - | chr4_1:68711979-68711998 | None:intergenic | 35.0% | |
| AACCAATAAGCTTGCAAACA+TGG | - | chr4_1:68711980-68711999 | None:intergenic | 35.0% | |
| ! | AACTCAGTCTTGCTGATTAA+AGG | - | chr4_1:68712059-68712078 | None:intergenic | 35.0% |
| !!! | GCTATTTTTTTCCAGGTTGT+TGG | + | chr4_1:68712120-68712139 | Msa0567340:intron | 35.0% |
| ! | TGGTATTTTCTCTTGTTGGA+TGG | - | chr4_1:68712195-68712214 | None:intergenic | 35.0% |
| ATCCAACAAGAGAAAATACC+AGG | + | chr4_1:68712194-68712213 | Msa0567340:CDS | 35.0% | |
| TTTAATGACATGGTATCCCA+CGG | + | chr4_1:68712638-68712657 | Msa0567340:intron | 35.0% | |
| ! | TGCTTTTGTAACTTGGAATC+TGG | + | chr4_1:68712723-68712742 | Msa0567340:intron | 35.0% |
| CATGACAATCCACAAATGTA+GGG | - | chr4_1:68712808-68712827 | None:intergenic | 35.0% | |
| TCATGACAATCCACAAATGT+AGG | - | chr4_1:68712809-68712828 | None:intergenic | 35.0% | |
| ATATATCCTTTGGCAAGATG+TGG | - | chr4_1:68712839-68712858 | None:intergenic | 35.0% | |
| !! | GTCTCTAAAGTCAACAGAAA+GGG | - | chr4_1:68712892-68712911 | None:intergenic | 35.0% |
| !! | TGTCTCTAAAGTCAACAGAA+AGG | - | chr4_1:68712893-68712912 | None:intergenic | 35.0% |
| TTGAAACCATTAAAGATGCC+AGG | - | chr4_1:68713005-68713024 | None:intergenic | 35.0% | |
| ! | TTTTTGTGGGCAACTTCAAT+AGG | - | chr4_1:68713088-68713107 | None:intergenic | 35.0% |
| !! | AGAAAAAATCTGGGTTGGTT+TGG | + | chr4_1:68713261-68713280 | Msa0567340:intron | 35.0% |
| !! | AGGTCATTTTGCGCTTTATT+TGG | + | chr4_1:68713400-68713419 | Msa0567340:CDS | 35.0% |
| !!! | TCATTTTGCGCTTTATTTGG+AGG | + | chr4_1:68713403-68713422 | Msa0567340:CDS | 35.0% |
| !!! | CATTTTGCGCTTTATTTGGA+GGG | + | chr4_1:68713404-68713423 | Msa0567340:CDS | 35.0% |
| AAGATTGAATGGGTCAAGTT+CGG | + | chr4_1:68713548-68713567 | Msa0567340:intron | 35.0% | |
| ACAAGGATTGCCATAAGTTT+CGG | - | chr4_1:68713577-68713596 | None:intergenic | 35.0% | |
| ! | TTCTCCAGAATTTCAAGTGA+AGG | + | chr4_1:68713605-68713624 | Msa0567340:CDS | 35.0% |
| ACTTCCTTCACTTGAAATTC+TGG | - | chr4_1:68713612-68713631 | None:intergenic | 35.0% | |
| ! | ATTTCAAGTGAAGGAAGTAG+AGG | + | chr4_1:68713614-68713633 | Msa0567340:CDS | 35.0% |
| ATTGATAAAAAGGGGGGAAA+AGG | - | chr4_1:68713685-68713704 | None:intergenic | 35.0% | |
| GAACAGATTGATAAAAAGGG+GGG | - | chr4_1:68713691-68713710 | None:intergenic | 35.0% | |
| GGAACAGATTGATAAAAAGG+GGG | - | chr4_1:68713692-68713711 | None:intergenic | 35.0% | |
| CGGAACAGATTGATAAAAAG+GGG | - | chr4_1:68713693-68713712 | None:intergenic | 35.0% | |
| CCGGAACAGATTGATAAAAA+GGG | - | chr4_1:68713694-68713713 | None:intergenic | 35.0% | |
| ! | CCCTTTTTATCAATCTGTTC+CGG | + | chr4_1:68713691-68713710 | Msa0567340:intron | 35.0% |
| TGTTTCGTACATCAATAAGG+AGG | - | chr4_1:68713729-68713748 | None:intergenic | 35.0% | |
| !! | AGTATCTCCTCATGTTTTGA+AGG | - | chr4_1:68713815-68713834 | None:intergenic | 35.0% |
| AATTGCAATTTCTGCTAGCA+AGG | + | chr4_1:68713955-68713974 | Msa0567340:three_prime_UTR | 35.0% | |
| ATTGCAATTTCTGCTAGCAA+GGG | + | chr4_1:68713956-68713975 | Msa0567340:three_prime_UTR | 35.0% | |
| CATGTTACATGGTGATAACA+TGG | - | chr4_1:68714028-68714047 | None:intergenic | 35.0% | |
| TTGCATGTTCAGTGTCAAAC+TGG | - | chr4_1:68710112-68710131 | None:intergenic | 40.0% | |
| TGACACTGAACATGCAAACA+AGG | + | chr4_1:68710115-68710134 | Msa0567340:five_prime_UTR | 40.0% | |
| !! | TCGCTTTTCTGAGTCATCAT+CGG | - | chr4_1:68710176-68710195 | None:intergenic | 40.0% |
| TAATGACGGTGAGGGAATAT+AGG | + | chr4_1:68710344-68710363 | Msa0567340:five_prime_UTR | 40.0% | |
| ! | CAAAGCAGTTCACCTTGTTT+CGG | + | chr4_1:68710475-68710494 | Msa0567340:CDS | 40.0% |
| AATAGGGTTGAGAAGAACAG+TGG | - | chr4_1:68710507-68710526 | None:intergenic | 40.0% | |
| TGAGAACTTACTATGGAAGG+AGG | - | chr4_1:68710554-68710573 | None:intergenic | 40.0% | |
| !! | TTCATTTTTGTCGTCCTCGT+CGG | + | chr4_1:68710753-68710772 | Msa0567340:CDS | 40.0% |
| !! | ATTATCTCTAGAATCCGACG+AGG | - | chr4_1:68710770-68710789 | None:intergenic | 40.0% |
| TTCCAACACAAGATCGTGAA+AGG | + | chr4_1:68710932-68710951 | Msa0567340:CDS | 40.0% | |
| TCCAACACAAGATCGTGAAA+GGG | + | chr4_1:68710933-68710952 | Msa0567340:CDS | 40.0% | |
| AGGGATAGATTTGAGTCTGA+TGG | + | chr4_1:68710952-68710971 | Msa0567340:CDS | 40.0% | |
| GGGATAGATTTGAGTCTGAT+GGG | + | chr4_1:68710953-68710972 | Msa0567340:CDS | 40.0% | |
| ACACTAGGAACCTCTTTCAA+CGG | - | chr4_1:68711009-68711028 | None:intergenic | 40.0% | |
| GGCAAATGATCAACAACCAA+AGG | - | chr4_1:68711033-68711052 | None:intergenic | 40.0% | |
| ! | CACTTCCGGCTTTAATTCAT+GGG | + | chr4_1:68711112-68711131 | Msa0567340:CDS | 40.0% |
| TTTGCAGCACATGGAAACAT+GGG | + | chr4_1:68711260-68711279 | Msa0567340:intron | 40.0% | |
| ! | TTTACCGGAGAAGTATGCTT+TGG | + | chr4_1:68711299-68711318 | Msa0567340:CDS | 40.0% |
| ACATGGATAACTCATTGTGC+TGG | - | chr4_1:68711361-68711380 | None:intergenic | 40.0% | |
| TGAAATATGCACCTCATGTC+GGG | - | chr4_1:68711509-68711528 | None:intergenic | 40.0% | |
| !!! | GAAACAACTTTTGGGTTTGG+TGG | + | chr4_1:68711572-68711591 | Msa0567340:intron | 40.0% |
| GATGACTTCGTATGGATGAA+TGG | + | chr4_1:68711817-68711836 | Msa0567340:intron | 40.0% | |
| TGAAATACCCCTCTTGTTGA+TGG | + | chr4_1:68711866-68711885 | Msa0567340:intron | 40.0% | |
| CAATATGCCATCAACAAGAG+GGG | - | chr4_1:68711876-68711895 | None:intergenic | 40.0% | |
| TAGTAGCACACGGAGTTTAA+CGG | + | chr4_1:68711937-68711956 | Msa0567340:intron | 40.0% | |
| TCCCATGTTTGCAAGCTTAT+TGG | + | chr4_1:68711975-68711994 | Msa0567340:intron | 40.0% | |
| GGTTAATAAGCTCATGCTGT+TGG | + | chr4_1:68711996-68712015 | Msa0567340:intron | 40.0% | |
| GTTCTACACTCTACATTCAG+TGG | + | chr4_1:68712076-68712095 | Msa0567340:intron | 40.0% | |
| TACACTCTACATTCAGTGGT+TGG | + | chr4_1:68712080-68712099 | Msa0567340:intron | 40.0% | |
| ! | GACCTGGTATTTTCTCTTGT+TGG | - | chr4_1:68712199-68712218 | None:intergenic | 40.0% |
| ACAAGAGAAAATACCAGGTC+TGG | + | chr4_1:68712199-68712218 | Msa0567340:intron | 40.0% | |
| TTAATGACATGGTATCCCAC+GGG | + | chr4_1:68712639-68712658 | Msa0567340:intron | 40.0% | |
| ATTGTACCACATCTTGCCAA+AGG | + | chr4_1:68712830-68712849 | Msa0567340:intron | 40.0% | |
| GGAAATCAAGCTTTCCTCAA+TGG | - | chr4_1:68712871-68712890 | None:intergenic | 40.0% | |
| GTTAGAAAGGATGAGTTTCC+TGG | + | chr4_1:68712984-68713003 | Msa0567340:intron | 40.0% | |
| GAGTTTCCTGGCATCTTTAA+TGG | + | chr4_1:68712996-68713015 | Msa0567340:intron | 40.0% | |
| GGTTTACTCCTGCAATATTG+TGG | - | chr4_1:68713334-68713353 | None:intergenic | 40.0% | |
| TGGTGCAAAGTGTGAAGTAA+CGG | - | chr4_1:68713355-68713374 | None:intergenic | 40.0% | |
| AGTTCGGTTTCCGAAACTTA+TGG | + | chr4_1:68713564-68713583 | Msa0567340:CDS | 40.0% | |
| TCTGGAGAATGTGCTAAACA+AGG | - | chr4_1:68713594-68713613 | None:intergenic | 40.0% | |
| TAAAAAGGGGGGAAAAGGTT+GGG | - | chr4_1:68713680-68713699 | None:intergenic | 40.0% | |
| ATAAAAAGGGGGGAAAAGGT+TGG | - | chr4_1:68713681-68713700 | None:intergenic | 40.0% | |
| GCCGGAACAGATTGATAAAA+AGG | - | chr4_1:68713695-68713714 | None:intergenic | 40.0% | |
| AAGGAGGTAAACAAATGAGC+CGG | - | chr4_1:68713713-68713732 | None:intergenic | 40.0% | |
| TCAGTAAAATGCGAACTGCA+AGG | - | chr4_1:68713913-68713932 | None:intergenic | 40.0% | |
| TTACATGGTGATAACATGGG+TGG | - | chr4_1:68714024-68714043 | None:intergenic | 40.0% | |
| AAGTTTCGTGCCTCAACAAC+CGG | + | chr4_1:68710224-68710243 | Msa0567340:five_prime_UTR | 45.0% | |
| !! | GGTGTTGATGATTATGCTGC+CGG | - | chr4_1:68710264-68710283 | None:intergenic | 45.0% |
| AAGGGATTGTAATGACGGTG+AGG | + | chr4_1:68710335-68710354 | Msa0567340:five_prime_UTR | 45.0% | |
| AGGGATTGTAATGACGGTGA+GGG | + | chr4_1:68710336-68710355 | Msa0567340:five_prime_UTR | 45.0% | |
| GATAAGATTGTGACTGCAGC+TGG | + | chr4_1:68710802-68710821 | Msa0567340:CDS | 45.0% | |
| TATCTATCTGCTAGAACGGG+TGG | + | chr4_1:68710907-68710926 | Msa0567340:CDS | 45.0% | |
| TCCCTTTCACGATCTTGTGT+TGG | - | chr4_1:68710937-68710956 | None:intergenic | 45.0% | |
| ! | AGATTTGAGTCTGATGGGTG+TGG | + | chr4_1:68710958-68710977 | Msa0567340:CDS | 45.0% |
| ! | TTTTCAACCGCCGTTGAAAG+AGG | + | chr4_1:68710996-68711015 | Msa0567340:CDS | 45.0% |
| ! | TCAACAACCAAAGGCACACT+AGG | - | chr4_1:68711024-68711043 | None:intergenic | 45.0% |
| TGCGGTTTATGATGCACTTC+CGG | + | chr4_1:68711098-68711117 | Msa0567340:CDS | 45.0% | |
| ! | GCACTTCCGGCTTTAATTCA+TGG | + | chr4_1:68711111-68711130 | Msa0567340:CDS | 45.0% |
| ! | TGTCGTTTCTTTGCAGCACA+TGG | + | chr4_1:68711251-68711270 | Msa0567340:intron | 45.0% |
| CTTTGCAGCACATGGAAACA+TGG | + | chr4_1:68711259-68711278 | Msa0567340:intron | 45.0% | |
| GGATAACTCATTGTGCTGGA+GGG | - | chr4_1:68711357-68711376 | None:intergenic | 45.0% | |
| TGGATAACTCATTGTGCTGG+AGG | - | chr4_1:68711358-68711377 | None:intergenic | 45.0% | |
| CTGCACGGTAGATTAGAGAT+AGG | + | chr4_1:68711447-68711466 | Msa0567340:intron | 45.0% | |
| !!! | ACAACTTTTGGGTTTGGTGG+TGG | + | chr4_1:68711575-68711594 | Msa0567340:intron | 45.0% |
| !!! | CAACTTTTGGGTTTGGTGGT+GGG | + | chr4_1:68711576-68711595 | Msa0567340:intron | 45.0% |
| AGTAGCACACGGAGTTTAAC+GGG | + | chr4_1:68711938-68711957 | Msa0567340:intron | 45.0% | |
| ! | CACCAAACACTGCTCCTTTT+CGG | - | chr4_1:68712149-68712168 | None:intergenic | 45.0% |
| TCTCTTGTTGGATGGTCGAA+GGG | - | chr4_1:68712187-68712206 | None:intergenic | 45.0% | |
| TTCTCTTGTTGGATGGTCGA+AGG | - | chr4_1:68712188-68712207 | None:intergenic | 45.0% | |
| ATGTGCACATCATAACCCGT+GGG | - | chr4_1:68712657-68712676 | None:intergenic | 45.0% | |
| AATGTGCACATCATAACCCG+TGG | - | chr4_1:68712658-68712677 | None:intergenic | 45.0% | |
| AACCCAAAAAATGAGGGCGA+CGG | - | chr4_1:68712768-68712787 | None:intergenic | 45.0% | |
| !! | TATCTCTGAGATTCAGCACG+AGG | + | chr4_1:68713146-68713165 | Msa0567340:intron | 45.0% |
| !! | ACCACTGACTTTCTAGCGAT+TGG | + | chr4_1:68713371-68713390 | Msa0567340:CDS | 45.0% |
| ACCAATCGCTAGAAAGTCAG+TGG | - | chr4_1:68713375-68713394 | None:intergenic | 45.0% | |
| ! | ACTGACTTTCTAGCGATTGG+TGG | + | chr4_1:68713374-68713393 | Msa0567340:CDS | 45.0% |
| ! | CTGACTTTCTAGCGATTGGT+GGG | + | chr4_1:68713375-68713394 | Msa0567340:CDS | 45.0% |
| ! | TGACTTTCTAGCGATTGGTG+GGG | + | chr4_1:68713376-68713395 | Msa0567340:CDS | 45.0% |
| GTTCATGTGTCTGTGAGTGA+GGG | - | chr4_1:68713654-68713673 | None:intergenic | 45.0% | |
| AAAAAGGGGGGAAAAGGTTG+GGG | - | chr4_1:68713679-68713698 | None:intergenic | 45.0% | |
| TCTTTCCTCCATGCAGTTGT+GGG | + | chr4_1:68713778-68713797 | Msa0567340:intron | 45.0% | |
| CTGAGTCATCATCGGTCACT+CGG | - | chr4_1:68710168-68710187 | None:intergenic | 50.0% | |
| !! | GAAGCGTTTTCCGGTTGTTG+AGG | - | chr4_1:68710237-68710256 | None:intergenic | 50.0% |
| ACCGGAAAACGCTTCTACAC+CGG | + | chr4_1:68710242-68710261 | Msa0567340:five_prime_UTR | 50.0% | |
| CAGTGGTGAGATCCGAAACA+AGG | - | chr4_1:68710490-68710509 | None:intergenic | 50.0% | |
| !! | GAGGACGAGAGGGTTTGTTA+TGG | - | chr4_1:68710535-68710554 | None:intergenic | 50.0% |
| ACTATGGAAGGAGGACGAGA+GGG | - | chr4_1:68710545-68710564 | None:intergenic | 50.0% | |
| TACTATGGAAGGAGGACGAG+AGG | - | chr4_1:68710546-68710565 | None:intergenic | 50.0% | |
| GCAGTAAACGACGACGTATC+AGG | - | chr4_1:68710724-68710743 | None:intergenic | 50.0% | |
| CTAGGAACCTCTTTCAACGG+CGG | - | chr4_1:68711006-68711025 | None:intergenic | 50.0% | |
| AGAGGTTCCTAGTGTGCCTT+TGG | + | chr4_1:68711014-68711033 | Msa0567340:CDS | 50.0% | |
| CAGGCCAAAGCATACTTCTC+CGG | - | chr4_1:68711306-68711325 | None:intergenic | 50.0% | |
| TGTACCAGCAAACTAGGTCC+AGG | - | chr4_1:68711325-68711344 | None:intergenic | 50.0% | |
| AACATGGGACTTCAACACGC+AGG | - | chr4_1:68711964-68711983 | None:intergenic | 50.0% | |
| ! | CTTTTCGGTCTCCAACAACC+TGG | - | chr4_1:68712134-68712153 | None:intergenic | 50.0% |
| CAGGTTGTTGGAGACCGAAA+AGG | + | chr4_1:68712132-68712151 | Msa0567340:intron | 50.0% | |
| GACCGAAAAGGAGCAGTGTT+TGG | + | chr4_1:68712144-68712163 | Msa0567340:CDS | 50.0% | |
| CGAAAAGGAGCAGTGTTTGG+TGG | + | chr4_1:68712147-68712166 | Msa0567340:CDS | 50.0% | |
| CTCTTGTTGGATGGTCGAAG+GGG | - | chr4_1:68712186-68712205 | None:intergenic | 50.0% | |
| AAAAAATGAGGGCGACGGGT+GGG | - | chr4_1:68712763-68712782 | None:intergenic | 50.0% | |
| !!! | ACCCGTCGCCCTCATTTTTT+GGG | + | chr4_1:68712763-68712782 | Msa0567340:intron | 50.0% |
| ACCCAAAAAATGAGGGCGAC+GGG | - | chr4_1:68712767-68712786 | None:intergenic | 50.0% | |
| CAGAAGGCTCCCTACATTTG+TGG | + | chr4_1:68712796-68712815 | Msa0567340:intron | 50.0% | |
| ! | GACTTTCTAGCGATTGGTGG+GGG | + | chr4_1:68713377-68713396 | Msa0567340:CDS | 50.0% |
| GGTTCATGTGTCTGTGAGTG+AGG | - | chr4_1:68713655-68713674 | None:intergenic | 50.0% | |
| CTCTTTCCTCCATGCAGTTG+TGG | + | chr4_1:68713777-68713796 | Msa0567340:intron | 50.0% | |
| CTTTCCTCCATGCAGTTGTG+GGG | + | chr4_1:68713779-68713798 | Msa0567340:intron | 50.0% | |
| TACAAAGCCCCACAACTGCA+TGG | - | chr4_1:68713789-68713808 | None:intergenic | 50.0% | |
| !! | TTGAGCAAAACAGAGGCACC+TGG | + | chr4_1:68713839-68713858 | Msa0567340:CDS | 50.0% |
| !! | TGAGCAAAACAGAGGCACCT+GGG | + | chr4_1:68713840-68713859 | Msa0567340:CDS | 50.0% |
| ATTTACCAGCGAGAGATCCC+AGG | - | chr4_1:68713860-68713879 | None:intergenic | 50.0% | |
| AGTCATCATCGGTCACTCGG+CGG | - | chr4_1:68710165-68710184 | None:intergenic | 55.0% | |
| !!! | GCCGGTGTAGAAGCGTTTTC+CGG | - | chr4_1:68710246-68710265 | None:intergenic | 55.0% |
| ATTGTGACTGCAGCTGGAGC+TGG | + | chr4_1:68710808-68710827 | Msa0567340:CDS | 55.0% | |
| ! | TGAGTCTGATGGGTGTGGTG+TGG | + | chr4_1:68710963-68710982 | Msa0567340:CDS | 55.0% |
| ! | CGGAGAAGTATGCTTTGGCC+TGG | + | chr4_1:68711304-68711323 | Msa0567340:CDS | 55.0% |
| ! | TTGGCCTGGACCTAGTTTGC+TGG | + | chr4_1:68711318-68711337 | Msa0567340:CDS | 55.0% |
| ! | AGGAGCAGTGTTTGGTGGCT+TGG | + | chr4_1:68712152-68712171 | Msa0567340:CDS | 55.0% |
| CCTGTTGGGCGATATACGAC+AGG | - | chr4_1:68712362-68712381 | None:intergenic | 55.0% | |
| CCTGTCGTATATCGCCCAAC+AGG | + | chr4_1:68712359-68712378 | Msa0567340:CDS | 55.0% | |
| CAAAAAATGAGGGCGACGGG+TGG | - | chr4_1:68712764-68712783 | None:intergenic | 55.0% | |
| !!! | CACCCGTCGCCCTCATTTTT+TGG | + | chr4_1:68712762-68712781 | Msa0567340:intron | 55.0% |
| ! | TTTCTAGCGATTGGTGGGGG+AGG | + | chr4_1:68713380-68713399 | Msa0567340:CDS | 55.0% |
| AAAGCCCCACAACTGCATGG+AGG | - | chr4_1:68713786-68713805 | None:intergenic | 55.0% | |
| AAGGGGGGAAAAGGTTGGGG+AGG | - | chr4_1:68713676-68713695 | None:intergenic | 60.0% | |
| AGGCACCTGGGATCTCTCGC+TGG | + | chr4_1:68713852-68713871 | Msa0567340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 68710103 | 68714252 | 68710103 | ID=Msa0567340;Name=Msa0567340 |
| chr4_1 | mRNA | 68710103 | 68714252 | 68710103 | ID=Msa0567340-mRNA-1;Parent=Msa0567340;Name=Msa0567340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=346|1|1|1|1|1|8|375|359 |
| chr4_1 | exon | 68710103 | 68710562 | 68710103 | ID=Msa0567340-mRNA-1:exon:22700;Parent=Msa0567340-mRNA-1 |
| chr4_1 | exon | 68710667 | 68711157 | 68710667 | ID=Msa0567340-mRNA-1:exon:22701;Parent=Msa0567340-mRNA-1 |
| chr4_1 | exon | 68711267 | 68711339 | 68711267 | ID=Msa0567340-mRNA-1:exon:22702;Parent=Msa0567340-mRNA-1 |
| chr4_1 | exon | 68712135 | 68712215 | 68712135 | ID=Msa0567340-mRNA-1:exon:22703;Parent=Msa0567340-mRNA-1 |
| chr4_1 | exon | 68712317 | 68712380 | 68712317 | ID=Msa0567340-mRNA-1:exon:22704;Parent=Msa0567340-mRNA-1 |
| chr4_1 | exon | 68713345 | 68713432 | 68713345 | ID=Msa0567340-mRNA-1:exon:22705;Parent=Msa0567340-mRNA-1 |
| chr4_1 | exon | 68713551 | 68713635 | 68713551 | ID=Msa0567340-mRNA-1:exon:22706;Parent=Msa0567340-mRNA-1 |
| chr4_1 | exon | 68713794 | 68714252 | 68713794 | ID=Msa0567340-mRNA-1:exon:22707;Parent=Msa0567340-mRNA-1 |
| chr4_1 | five_prime_UTR | 68710103 | 68710448 | 68710103 | ID=Msa0567340-mRNA-1:five_prime_utr;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68710449 | 68710562 | 68710449 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68710667 | 68711157 | 68710667 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68711267 | 68711339 | 68711267 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68712135 | 68712215 | 68712135 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68712317 | 68712380 | 68712317 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68713345 | 68713432 | 68713345 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68713551 | 68713635 | 68713551 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | CDS | 68713794 | 68713877 | 68713794 | ID=Msa0567340-mRNA-1:cds;Parent=Msa0567340-mRNA-1 |
| chr4_1 | three_prime_UTR | 68713878 | 68714252 | 68713878 | ID=Msa0567340-mRNA-1:three_prime_utr;Parent=Msa0567340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
