AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087880 MtrunA17_Chr1g0204861 94.697 132 1 2 1 130 1 128 1.43e-85 247
Msa0087880 MtrunA17_Chr2g0305161 53.061 49 23 0 113 161 138 186 5.50e-14 66.2
Msa0087880 MtrunA17_Chr4g0041541 28.824 170 93 7 4 161 76 229 4.52e-13 65.1
Msa0087880 MtrunA17_Chr3g0121201 53.488 43 20 0 117 159 237 279 1.05e-12 64.7
Msa0087880 MtrunA17_Chr1g0207561 46.667 45 24 0 117 161 200 244 3.51e-11 59.7
Msa0087880 MtrunA17_Chr3g0133001 38.462 78 45 2 89 163 126 203 7.55e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087880 AT2G15580.1 36.000 125 59 3 49 161 79 194 1.72e-17 76.3
Msa0087880 AT1G55530.1 57.143 42 18 0 117 158 223 264 3.56e-12 63.5
Msa0087880 AT1G55530.2 57.143 42 18 0 117 158 223 264 3.56e-12 63.5
Msa0087880 AT1G55530.3 57.143 42 18 0 117 158 190 231 5.03e-12 62.8
Msa0087880 AT3G13430.4 53.333 45 21 0 117 161 225 269 5.87e-12 62.8
Msa0087880 AT3G13430.3 53.333 45 21 0 117 161 225 269 5.87e-12 62.8
Msa0087880 AT3G13430.1 53.333 45 21 0 117 161 225 269 5.87e-12 62.8
Msa0087880 AT3G13430.2 53.333 45 21 0 117 161 225 269 5.87e-12 62.8
Msa0087880 AT3G19950.1 23.077 156 114 3 7 158 104 257 1.36e-11 61.6
Msa0087880 AT3G19950.2 45.098 51 28 0 108 158 265 315 1.68e-11 61.6
Msa0087880 AT3G19950.3 45.098 51 28 0 108 158 265 315 1.68e-11 61.6
Msa0087880 AT3G58720.2 43.137 51 29 0 111 161 166 216 2.01e-11 60.8
Msa0087880 AT3G58720.1 43.137 51 29 0 111 161 138 188 2.25e-11 60.5
Msa0087880 AT3G58720.3 43.137 51 29 0 111 161 166 216 2.54e-11 60.8
Msa0087880 AT3G58720.4 43.137 51 29 0 111 161 158 208 2.68e-11 60.5
Msa0087880 AT5G56340.1 50.000 42 21 0 117 158 259 300 4.24e-11 60.5
Msa0087880 AT4G26400.2 44.681 47 26 0 117 163 241 287 8.00e-11 59.7
Msa0087880 AT4G26400.1 44.681 47 26 0 117 163 241 287 8.00e-11 59.7

Find 55 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCATGTTAAAGTCTTTA+AGG 0.190882 1_2:+68915155 None:intergenic
CTAATCCTGCATCTTTCTTT+TGG 0.238953 1_2:+68915701 None:intergenic
TTGATGGTTGCGTGCTCTAC+TGG 0.300182 1_2:+68916681 None:intergenic
AAATTGACCCCTCTAAGTTT+TGG 0.342451 1_2:-68916746 Msa0087880:five_prime_UTR
TCATAACCTCTTCATCTTGC+TGG 0.345809 1_2:+68915590 None:intergenic
GTGCATCCAATGATTCCTTT+AGG 0.352281 1_2:+68916482 None:intergenic
TTGTTGAGATTAGTTAAAAC+AGG 0.360846 1_2:-68915432 Msa0087880:three_prime_UTR
CTCTTACCTAAAGGAATCAT+TGG 0.362848 1_2:-68916488 Msa0087880:CDS
TTGTAAATACCAAAACTTAG+AGG 0.364195 1_2:+68916737 None:intergenic
TTTGAAAGCAGTTTCATCTA+AGG 0.366099 1_2:+68916438 None:intergenic
CAAAAGAAAGATGCAGGATT+AGG 0.373693 1_2:-68915700 Msa0087880:CDS
TTTCTTCTGTAGGCGTTGTT+TGG 0.381475 1_2:+68916414 None:intergenic
CTCAACAATAGTTCTACAAT+AGG 0.385030 1_2:+68915498 None:intergenic
GGAAGTTACTAGAAAGTTCA+TGG 0.415996 1_2:-68915675 Msa0087880:CDS
ATTCAGCATGTCTTCTCCCT+TGG 0.429232 1_2:-68915543 Msa0087880:CDS
GATACTTATGTGAGCAAGAA+AGG 0.444102 1_2:+68915566 None:intergenic
TTCATTCATGTTAATTGGGT+GGG 0.453099 1_2:-68915184 Msa0087880:three_prime_UTR
TTTCATTCATGTTAATTGGG+TGG 0.460430 1_2:-68915185 Msa0087880:three_prime_UTR
TGTAAATACCAAAACTTAGA+GGG 0.475798 1_2:+68916738 None:intergenic
AAGACTTTAACATGCATGCC+TGG 0.482144 1_2:-68915150 Msa0087880:three_prime_UTR
CAACGCCTACAGAAGAAACT+TGG 0.500663 1_2:-68916409 Msa0087880:CDS
TCAACAATAGTTCTACAATA+GGG 0.502242 1_2:+68915499 None:intergenic
GCTGGTAGGCTACCTGGTGT+TGG 0.511550 1_2:-68916577 Msa0087880:CDS
CTTAGGTAAAGAAGAGTGAA+TGG 0.513291 1_2:-68916599 Msa0087880:exon
CGTTTATCTACTATAGCTAG+TGG 0.514188 1_2:-68915295 Msa0087880:three_prime_UTR
TGAATGGCTGGTAGGCTACC+TGG 0.514647 1_2:-68916583 Msa0087880:CDS
AGCTTCCAAAAGAAAGATGC+AGG 0.517931 1_2:-68915706 Msa0087880:CDS
GGATTTGATGTACCTGGAAG+AGG 0.518796 1_2:+68916375 None:intergenic
GGTAAAGAAGAGTGAATGGC+TGG 0.520572 1_2:-68916595 Msa0087880:exon
AGATTTCCAGCAAGATGAAG+AGG 0.526085 1_2:-68915596 Msa0087880:CDS
CTACAGAGACTCTTACCTAA+AGG 0.529350 1_2:-68916497 Msa0087880:CDS
TGAGGATGTGCTTCAAGCCA+AGG 0.532471 1_2:+68915526 None:intergenic
TGATGGTTGCGTGCTCTACT+GGG 0.542806 1_2:+68916682 None:intergenic
ATTGAGATGAGAATAAGCTT+AGG 0.543333 1_2:-68916616 Msa0087880:five_prime_UTR
ACTATAGCTAGTGGGTTGTT+CGG 0.546670 1_2:-68915286 Msa0087880:three_prime_UTR
CGCAACCATCAATCAAAACA+TGG 0.556414 1_2:-68916670 Msa0087880:five_prime_UTR
AAGCATGTTAGTTAGTACCT+TGG 0.556879 1_2:-68915344 Msa0087880:three_prime_UTR
AGTGACCAAGTTTCTTCTGT+AGG 0.561380 1_2:+68916404 None:intergenic
CTTGGTGACAATCCAACACC+AGG 0.576332 1_2:+68916565 None:intergenic
AGAAAGATGCAGGATTAGGT+AGG 0.580173 1_2:-68915696 Msa0087880:CDS
CTGGAAATCTTCTAAGCACA+CGG 0.583428 1_2:+68915609 None:intergenic
TCAACAAGTAAATATCATCA+AGG 0.589727 1_2:+68915475 None:intergenic
GTAGTAGTCATTGAAGTCCA+TGG 0.592320 1_2:+68916460 None:intergenic
TACACATTGATTAGAGTCCA+AGG 0.600793 1_2:+68915327 None:intergenic
AAGAAGAGTGAATGGCTGGT+AGG 0.606425 1_2:-68916591 Msa0087880:exon
GTAAATACCAAAACTTAGAG+GGG 0.616152 1_2:+68916739 None:intergenic
CTTTAGGTAAGAGTCTCTGT+AGG 0.619274 1_2:+68916498 None:intergenic
GTTTATCTACTATAGCTAGT+GGG 0.627914 1_2:-68915294 Msa0087880:three_prime_UTR
AGGAATCATTGGATGCACCA+TGG 0.643184 1_2:-68916477 Msa0087880:CDS
TGTTGAGATTAGTTAAAACA+GGG 0.644264 1_2:-68915431 Msa0087880:three_prime_UTR
GAGGATGTGCTTCAAGCCAA+GGG 0.644286 1_2:+68915527 None:intergenic
GTTCTACAATAGGGACAATG+AGG 0.652812 1_2:+68915508 None:intergenic
GATAAACGTGACTCATCACA+TGG 0.674611 1_2:+68915236 None:intergenic
GCATATCAAACACAACAACC+AGG 0.678834 1_2:+68915132 None:intergenic
GAAAGTTCATGGTTATTACG+TGG 0.699981 1_2:-68915664 Msa0087880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAAAATTTATAAATA+TGG - chr1_2:68916006-68916025 Msa0087880:intron 0.0%
!! TTATTAAAAATTTATAAATA+TGG - chr1_2:68916006-68916025 Msa0087880:intron 0.0%
!! AAATAAAATATGAATTTCAA+TGG + chr1_2:68915929-68915948 None:intergenic 10.0%
!! AAATAAAATATGAATTTCAA+TGG + chr1_2:68915929-68915948 None:intergenic 10.0%
!! AAAAAACTGTATTATTATGT+AGG + chr1_2:68915545-68915564 None:intergenic 15.0%
!!! AATTTATTTTTTTCTCTCTA+AGG - chr1_2:68915700-68915719 Msa0087880:CDS 15.0%
!!! GATTTTGACAATAATTTAAT+TGG + chr1_2:68915896-68915915 None:intergenic 15.0%
!! AAAAAACTGTATTATTATGT+AGG + chr1_2:68915545-68915564 None:intergenic 15.0%
!!! AATTTATTTTTTTCTCTCTA+AGG - chr1_2:68915700-68915719 Msa0087880:CDS 15.0%
!!! GATTTTGACAATAATTTAAT+TGG + chr1_2:68915896-68915915 None:intergenic 15.0%
!!! TAATTTTCTGATCTTTTTCT+TGG + chr1_2:68915352-68915371 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG - chr1_2:68915568-68915587 Msa0087880:CDS 20.0%
!! AGAATTTATACAAATTGTCT+AGG - chr1_2:68915619-68915638 Msa0087880:CDS 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG + chr1_2:68916163-68916182 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG - chr1_2:68916708-68916727 Msa0087880:five_prime_UTR 20.0%
!!! TAATTTTCTGATCTTTTTCT+TGG + chr1_2:68915352-68915371 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG - chr1_2:68915568-68915587 Msa0087880:CDS 20.0%
!! AGAATTTATACAAATTGTCT+AGG - chr1_2:68915619-68915638 Msa0087880:CDS 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG + chr1_2:68916163-68916182 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG - chr1_2:68916708-68916727 Msa0087880:five_prime_UTR 20.0%
! TGTAAATACCAAAACTTAGA+GGG + chr1_2:68915161-68915180 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG + chr1_2:68915162-68915181 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG - chr1_2:68915164-68915183 Msa0087880:three_prime_UTR 25.0%
!!! ATGGATGCATTATTTTTTGT+GGG - chr1_2:68915245-68915264 Msa0087880:three_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG + chr1_2:68915611-68915630 None:intergenic 25.0%
! ATGAATTTCAATGGATATCA+CGG + chr1_2:68915920-68915939 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG - chr1_2:68916052-68916071 Msa0087880:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG + chr1_2:68916164-68916183 None:intergenic 25.0%
!! TCAACAATAGTTCTACAATA+GGG + chr1_2:68916400-68916419 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG + chr1_2:68916424-68916443 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG - chr1_2:68916464-68916483 Msa0087880:CDS 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG - chr1_2:68916465-68916484 Msa0087880:CDS 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG - chr1_2:68916707-68916726 Msa0087880:five_prime_UTR 25.0%
! TGTAAATACCAAAACTTAGA+GGG + chr1_2:68915161-68915180 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG + chr1_2:68915162-68915181 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG - chr1_2:68915164-68915183 Msa0087880:three_prime_UTR 25.0%
!!! ATGGATGCATTATTTTTTGT+GGG - chr1_2:68915245-68915264 Msa0087880:three_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG + chr1_2:68915611-68915630 None:intergenic 25.0%
! ATGAATTTCAATGGATATCA+CGG + chr1_2:68915920-68915939 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG - chr1_2:68916052-68916071 Msa0087880:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG + chr1_2:68916164-68916183 None:intergenic 25.0%
!! TCAACAATAGTTCTACAATA+GGG + chr1_2:68916400-68916419 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG + chr1_2:68916424-68916443 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG - chr1_2:68916464-68916483 Msa0087880:CDS 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG - chr1_2:68916465-68916484 Msa0087880:CDS 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG - chr1_2:68916707-68916726 Msa0087880:five_prime_UTR 25.0%
! TCAATTTTCATGACTCTACA+TGG + chr1_2:68915137-68915156 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG + chr1_2:68915160-68915179 None:intergenic 30.0%
!!! CATGGATGCATTATTTTTTG+TGG - chr1_2:68915244-68915263 Msa0087880:three_prime_UTR 30.0%
ATTGAGATGAGAATAAGCTT+AGG - chr1_2:68915280-68915299 Msa0087880:three_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG + chr1_2:68915461-68915480 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG - chr1_2:68915706-68915725 Msa0087880:CDS 30.0%
TGAATTTCAATGGATATCAC+GGG + chr1_2:68915919-68915938 None:intergenic 30.0%
! CTCAACAATAGTTCTACAAT+AGG + chr1_2:68916401-68916420 None:intergenic 30.0%
GTTTATCTACTATAGCTAGT+GGG - chr1_2:68916602-68916621 Msa0087880:exon 30.0%
TTTCATTCATGTTAATTGGG+TGG - chr1_2:68916711-68916730 Msa0087880:five_prime_UTR 30.0%
TTCATTCATGTTAATTGGGT+GGG - chr1_2:68916712-68916731 Msa0087880:five_prime_UTR 30.0%
CATGCATGTTAAAGTCTTTA+AGG + chr1_2:68916744-68916763 None:intergenic 30.0%
! TCAATTTTCATGACTCTACA+TGG + chr1_2:68915137-68915156 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG + chr1_2:68915160-68915179 None:intergenic 30.0%
!!! CATGGATGCATTATTTTTTG+TGG - chr1_2:68915244-68915263 Msa0087880:three_prime_UTR 30.0%
ATTGAGATGAGAATAAGCTT+AGG - chr1_2:68915280-68915299 Msa0087880:three_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG + chr1_2:68915461-68915480 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG - chr1_2:68915706-68915725 Msa0087880:CDS 30.0%
TGAATTTCAATGGATATCAC+GGG + chr1_2:68915919-68915938 None:intergenic 30.0%
! CTCAACAATAGTTCTACAAT+AGG + chr1_2:68916401-68916420 None:intergenic 30.0%
GTTTATCTACTATAGCTAGT+GGG - chr1_2:68916602-68916621 Msa0087880:exon 30.0%
TTTCATTCATGTTAATTGGG+TGG - chr1_2:68916711-68916730 Msa0087880:five_prime_UTR 30.0%
TTCATTCATGTTAATTGGGT+GGG - chr1_2:68916712-68916731 Msa0087880:five_prime_UTR 30.0%
CATGCATGTTAAAGTCTTTA+AGG + chr1_2:68916744-68916763 None:intergenic 30.0%
! AAATTGACCCCTCTAAGTTT+TGG - chr1_2:68915150-68915169 Msa0087880:three_prime_UTR 35.0%
!!! TGCATCCATGTTTTGATTGA+TGG + chr1_2:68915234-68915253 None:intergenic 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG - chr1_2:68915297-68915316 Msa0087880:three_prime_UTR 35.0%
CTCTTACCTAAAGGAATCAT+TGG - chr1_2:68915408-68915427 Msa0087880:three_prime_UTR 35.0%
TATGTAGGATTTGATGTACC+TGG + chr1_2:68915530-68915549 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG - chr1_2:68915789-68915808 Msa0087880:intron 35.0%
ACCTCATAACTCATCATAAG+TGG + chr1_2:68915793-68915812 None:intergenic 35.0%
TCTGCATACTTCATCAATGT+CGG - chr1_2:68915816-68915835 Msa0087880:intron 35.0%
GAATTTCAATGGATATCACG+GGG + chr1_2:68915918-68915937 None:intergenic 35.0%
GAACACAATCCCAAAAAAGA+AGG - chr1_2:68916151-68916170 Msa0087880:intron 35.0%
! CTAATCCTGCATCTTTCTTT+TGG + chr1_2:68916198-68916217 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG - chr1_2:68916196-68916215 Msa0087880:intron 35.0%
GGAAGTTACTAGAAAGTTCA+TGG - chr1_2:68916221-68916240 Msa0087880:intron 35.0%
GAAAGTTCATGGTTATTACG+TGG - chr1_2:68916232-68916251 Msa0087880:intron 35.0%
GATACTTATGTGAGCAAGAA+AGG + chr1_2:68916333-68916352 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG - chr1_2:68916552-68916571 Msa0087880:CDS 35.0%
! TACACATTGATTAGAGTCCA+AGG + chr1_2:68916572-68916591 None:intergenic 35.0%
CGTTTATCTACTATAGCTAG+TGG - chr1_2:68916601-68916620 Msa0087880:exon 35.0%
! AAATTGACCCCTCTAAGTTT+TGG - chr1_2:68915150-68915169 Msa0087880:three_prime_UTR 35.0%
!!! TGCATCCATGTTTTGATTGA+TGG + chr1_2:68915234-68915253 None:intergenic 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG - chr1_2:68915297-68915316 Msa0087880:three_prime_UTR 35.0%
CTCTTACCTAAAGGAATCAT+TGG - chr1_2:68915408-68915427 Msa0087880:three_prime_UTR 35.0%
TATGTAGGATTTGATGTACC+TGG + chr1_2:68915530-68915549 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG - chr1_2:68915789-68915808 Msa0087880:intron 35.0%
ACCTCATAACTCATCATAAG+TGG + chr1_2:68915793-68915812 None:intergenic 35.0%
TCTGCATACTTCATCAATGT+CGG - chr1_2:68915816-68915835 Msa0087880:intron 35.0%
GAATTTCAATGGATATCACG+GGG + chr1_2:68915918-68915937 None:intergenic 35.0%
GAACACAATCCCAAAAAAGA+AGG - chr1_2:68916151-68916170 Msa0087880:intron 35.0%
! CTAATCCTGCATCTTTCTTT+TGG + chr1_2:68916198-68916217 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG - chr1_2:68916196-68916215 Msa0087880:intron 35.0%
GGAAGTTACTAGAAAGTTCA+TGG - chr1_2:68916221-68916240 Msa0087880:intron 35.0%
GAAAGTTCATGGTTATTACG+TGG - chr1_2:68916232-68916251 Msa0087880:intron 35.0%
GATACTTATGTGAGCAAGAA+AGG + chr1_2:68916333-68916352 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG - chr1_2:68916552-68916571 Msa0087880:CDS 35.0%
! TACACATTGATTAGAGTCCA+AGG + chr1_2:68916572-68916591 None:intergenic 35.0%
CGTTTATCTACTATAGCTAG+TGG - chr1_2:68916601-68916620 Msa0087880:exon 35.0%
CGCAACCATCAATCAAAACA+TGG - chr1_2:68915226-68915245 Msa0087880:three_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG + chr1_2:68915401-68915420 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG - chr1_2:68915399-68915418 Msa0087880:three_prime_UTR 40.0%
GTGCATCCAATGATTCCTTT+AGG + chr1_2:68915417-68915436 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG + chr1_2:68915439-68915458 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG + chr1_2:68915485-68915504 None:intergenic 40.0%
AGTGACCAAGTTTCTTCTGT+AGG + chr1_2:68915495-68915514 None:intergenic 40.0%
GAGTGTGCATAAGAAACATG+TGG + chr1_2:68915660-68915679 None:intergenic 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG - chr1_2:68915715-68915734 Msa0087880:CDS 40.0%
AAGAATCCTACCATCTAACC+TGG - chr1_2:68915843-68915862 Msa0087880:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG - chr1_2:68916190-68916209 Msa0087880:intron 40.0%
AGAAAGATGCAGGATTAGGT+AGG - chr1_2:68916200-68916219 Msa0087880:intron 40.0%
CTGGAAATCTTCTAAGCACA+CGG + chr1_2:68916290-68916309 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG - chr1_2:68916300-68916319 Msa0087880:intron 40.0%
TCATAACCTCTTCATCTTGC+TGG + chr1_2:68916309-68916328 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG + chr1_2:68916391-68916410 None:intergenic 40.0%
!! ACTATAGCTAGTGGGTTGTT+CGG - chr1_2:68916610-68916629 Msa0087880:five_prime_UTR 40.0%
GATAAACGTGACTCATCACA+TGG + chr1_2:68916663-68916682 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG - chr1_2:68916746-68916765 Msa0087880:five_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG + chr1_2:68916767-68916786 None:intergenic 40.0%
CGCAACCATCAATCAAAACA+TGG - chr1_2:68915226-68915245 Msa0087880:three_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG + chr1_2:68915401-68915420 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG - chr1_2:68915399-68915418 Msa0087880:three_prime_UTR 40.0%
GTGCATCCAATGATTCCTTT+AGG + chr1_2:68915417-68915436 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG + chr1_2:68915439-68915458 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG + chr1_2:68915485-68915504 None:intergenic 40.0%
AGTGACCAAGTTTCTTCTGT+AGG + chr1_2:68915495-68915514 None:intergenic 40.0%
GAGTGTGCATAAGAAACATG+TGG + chr1_2:68915660-68915679 None:intergenic 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG - chr1_2:68915715-68915734 Msa0087880:CDS 40.0%
AAGAATCCTACCATCTAACC+TGG - chr1_2:68915843-68915862 Msa0087880:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG - chr1_2:68916190-68916209 Msa0087880:intron 40.0%
AGAAAGATGCAGGATTAGGT+AGG - chr1_2:68916200-68916219 Msa0087880:intron 40.0%
CTGGAAATCTTCTAAGCACA+CGG + chr1_2:68916290-68916309 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG - chr1_2:68916300-68916319 Msa0087880:intron 40.0%
TCATAACCTCTTCATCTTGC+TGG + chr1_2:68916309-68916328 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG + chr1_2:68916391-68916410 None:intergenic 40.0%
!! ACTATAGCTAGTGGGTTGTT+CGG - chr1_2:68916610-68916629 Msa0087880:five_prime_UTR 40.0%
GATAAACGTGACTCATCACA+TGG + chr1_2:68916663-68916682 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG - chr1_2:68916746-68916765 Msa0087880:five_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG + chr1_2:68916767-68916786 None:intergenic 40.0%
GGTAAAGAAGAGTGAATGGC+TGG - chr1_2:68915301-68915320 Msa0087880:three_prime_UTR 45.0%
AAGAAGAGTGAATGGCTGGT+AGG - chr1_2:68915305-68915324 Msa0087880:three_prime_UTR 45.0%
AGGAATCATTGGATGCACCA+TGG - chr1_2:68915419-68915438 Msa0087880:three_prime_UTR 45.0%
CAACGCCTACAGAAGAAACT+TGG - chr1_2:68915487-68915506 Msa0087880:exon 45.0%
! GTCACTTCTTTTCCTCTTCC+AGG - chr1_2:68915509-68915528 Msa0087880:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG + chr1_2:68915524-68915543 None:intergenic 45.0%
CTTATGCACACTCACATGCA+TGG - chr1_2:68915667-68915686 Msa0087880:CDS 45.0%
ATATGTCTATAGCCACAGCC+AGG + chr1_2:68915864-68915883 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG - chr1_2:68916353-68916372 Msa0087880:intron 45.0%
GGTAAAGAAGAGTGAATGGC+TGG - chr1_2:68915301-68915320 Msa0087880:three_prime_UTR 45.0%
AAGAAGAGTGAATGGCTGGT+AGG - chr1_2:68915305-68915324 Msa0087880:three_prime_UTR 45.0%
AGGAATCATTGGATGCACCA+TGG - chr1_2:68915419-68915438 Msa0087880:three_prime_UTR 45.0%
CAACGCCTACAGAAGAAACT+TGG - chr1_2:68915487-68915506 Msa0087880:exon 45.0%
! GTCACTTCTTTTCCTCTTCC+AGG - chr1_2:68915509-68915528 Msa0087880:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG + chr1_2:68915524-68915543 None:intergenic 45.0%
CTTATGCACACTCACATGCA+TGG - chr1_2:68915667-68915686 Msa0087880:CDS 45.0%
ATATGTCTATAGCCACAGCC+AGG + chr1_2:68915864-68915883 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG - chr1_2:68916353-68916372 Msa0087880:intron 45.0%
TGATGGTTGCGTGCTCTACT+GGG + chr1_2:68915217-68915236 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG + chr1_2:68915218-68915237 None:intergenic 50.0%
! CTTGGTGACAATCCAACACC+AGG + chr1_2:68915334-68915353 None:intergenic 50.0%
GCACACTCACATGCATGGTA+AGG - chr1_2:68915672-68915691 Msa0087880:CDS 50.0%
ATAGCCACAGCCAGGTTAGA+TGG + chr1_2:68915856-68915875 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG + chr1_2:68916372-68916391 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG + chr1_2:68916373-68916392 None:intergenic 50.0%
TGATGGTTGCGTGCTCTACT+GGG + chr1_2:68915217-68915236 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG + chr1_2:68915218-68915237 None:intergenic 50.0%
! CTTGGTGACAATCCAACACC+AGG + chr1_2:68915334-68915353 None:intergenic 50.0%
GCACACTCACATGCATGGTA+AGG - chr1_2:68915672-68915691 Msa0087880:CDS 50.0%
ATAGCCACAGCCAGGTTAGA+TGG + chr1_2:68915856-68915875 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG + chr1_2:68916372-68916391 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG + chr1_2:68916373-68916392 None:intergenic 50.0%
TGAATGGCTGGTAGGCTACC+TGG - chr1_2:68915313-68915332 Msa0087880:three_prime_UTR 55.0%
CCACAGCCAGGTTAGATGGT+AGG + chr1_2:68915852-68915871 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG - chr1_2:68915849-68915868 Msa0087880:intron 55.0%
TGAATGGCTGGTAGGCTACC+TGG - chr1_2:68915313-68915332 Msa0087880:three_prime_UTR 55.0%
CCACAGCCAGGTTAGATGGT+AGG + chr1_2:68915852-68915871 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG - chr1_2:68915849-68915868 Msa0087880:intron 55.0%
GCTGGTAGGCTACCTGGTGT+TGG - chr1_2:68915319-68915338 Msa0087880:three_prime_UTR 60.0%
GCTGGTAGGCTACCTGGTGT+TGG - chr1_2:68915319-68915338 Msa0087880:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 68915097 68916821 68915097 ID=Msa0087880;Name=Msa0087880
chr1_2 mRNA 68915097 68916821 68915097 ID=Msa0087880-mRNA-1;Parent=Msa0087880;Name=Msa0087880-mRNA-1;_AED=0.14;_eAED=0.14;_QI=219|1|1|1|1|1|2|395|163
chr1_2 exon 68915097 68915768 68915097 ID=Msa0087880-mRNA-1:exon:23638;Parent=Msa0087880-mRNA-1
chr1_2 exon 68916388 68916821 68916388 ID=Msa0087880-mRNA-1:exon:23637;Parent=Msa0087880-mRNA-1
chr1_2 five_prime_UTR 68916603 68916821 68916603 ID=Msa0087880-mRNA-1:five_prime_utr;Parent=Msa0087880-mRNA-1
chr1_2 CDS 68916388 68916602 68916388 ID=Msa0087880-mRNA-1:cds;Parent=Msa0087880-mRNA-1
chr1_2 CDS 68915492 68915768 68915492 ID=Msa0087880-mRNA-1:cds;Parent=Msa0087880-mRNA-1
chr1_2 three_prime_UTR 68915097 68915491 68915097 ID=Msa0087880-mRNA-1:three_prime_utr;Parent=Msa0087880-mRNA-1
Gene Sequence

>Msa0087880

ATGGCTGGTAGGCTACCTGGTGTTGGATTGTCACCAAGAAAAAGATCAGAAAATTATCACAACAGACATGAACATTATGCTACCTACAGAGACTCTTACCTAAAGGAATCATTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAACTGCTTTCAAAGCCAAACAACGCCTACAGAAGAAACTTGGTCACTTCTTTTCCTCTTCCAGTGAACACAATCCCAAAAAAGAAGGAAAAGAAAACAAAAGCAGCTTCCAAAAGAAAGATGCAGGATTAGGTAGGAAGTTACTAGAAAGTTCATGGTTATTACGTGGCAACAAGTTTAAGAAAGAGAGAAAAATTTGTGCCGTGTGCTTAGAAGATTTCCAGCAAGATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAGCACATCCTCATTGTCCCTATTGTAGAACTATTGTTGAGCCTTGA

Protein sequence

>Msa0087880

MAGRLPGVGLSPRKRSENYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSSEHNPKKEGKENKSSFQKKDAGLGRKLLESSWLLRGNKFKKERKICAVCLEDFQQDEEVMNLSCSHKYHSACLLPWLEAHPHCPYCRTIVEP*