Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440160 | sp|A0A0B6VQ48|PAR1_ROSHC | 42.679 | 321 | 178 | 5 | 2 | 319 | 3 | 320 | 2.43e-86 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440160 | G7J0Q8 | 99.060 | 319 | 3 | 0 | 1 | 319 | 1 | 319 | 0.0 | 651 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa1440160 | 0.818980 | 1.476650e-52 | -8.615850e-47 |
| Msa0021980 | Msa1440160 | 0.804139 | 2.493584e-49 | -8.615850e-47 |
| Msa0053480 | Msa1440160 | 0.805094 | 1.575760e-49 | -8.615850e-47 |
| Msa0057270 | Msa1440160 | 0.817490 | 3.209714e-52 | -8.615850e-47 |
| Msa0089410 | Msa1440160 | 0.807387 | 5.180818e-50 | -8.615850e-47 |
| Msa0090350 | Msa1440160 | 0.803138 | 4.021890e-49 | -8.615850e-47 |
| Msa0117300 | Msa1440160 | 0.827055 | 1.932888e-54 | -8.615850e-47 |
| Msa0119630 | Msa1440160 | 0.839426 | 1.595754e-57 | -8.615850e-47 |
| Msa0120310 | Msa1440160 | 0.816933 | 4.282333e-52 | -8.615850e-47 |
| Msa1346920 | Msa1440160 | 0.810293 | 1.238745e-50 | -8.615850e-47 |
| Msa1349410 | Msa1440160 | 0.806590 | 7.641547e-50 | -8.615850e-47 |
| Msa1349640 | Msa1440160 | 0.812808 | 3.518167e-51 | -8.615850e-47 |
| Msa1351590 | Msa1440160 | 0.819173 | 1.334279e-52 | -8.615850e-47 |
| Msa1368660 | Msa1440160 | 0.827740 | 1.323709e-54 | -8.615850e-47 |
| Msa1388270 | Msa1440160 | 0.825973 | 3.499340e-54 | -8.615850e-47 |
| Msa1391600 | Msa1440160 | 0.818728 | 1.684400e-52 | -8.615850e-47 |
| Msa1392570 | Msa1440160 | 0.808825 | 2.560887e-50 | -8.615850e-47 |
| Msa1395360 | Msa1440160 | 0.820098 | 8.208023e-53 | -8.615850e-47 |
| Msa1397550 | Msa1440160 | 0.816103 | 6.571173e-52 | -8.615850e-47 |
| Msa1413880 | Msa1440160 | 0.811559 | 6.590982e-51 | -8.615850e-47 |
| Msa1414560 | Msa1440160 | 0.802404 | 5.702118e-49 | -8.615850e-47 |
| Msa1427260 | Msa1440160 | 0.813735 | 2.201894e-51 | -8.615850e-47 |
| Msa1440160 | Msa1443440 | 0.800488 | 1.407598e-48 | -8.615850e-47 |
| Msa1440160 | Msa1445040 | -0.804884 | 1.743484e-49 | -8.615850e-47 |
| Msa1440160 | Msa1446220 | 0.815852 | 7.474790e-52 | -8.615850e-47 |
| Msa1440160 | Msa1452300 | 0.801339 | 9.434607e-49 | -8.615850e-47 |
| Msa1440160 | Msa1454330 | 0.801244 | 9.864893e-49 | -8.615850e-47 |
| Msa1440160 | Msa1459630 | 0.805918 | 1.058409e-49 | -8.615850e-47 |
| Msa0607620 | Msa1440160 | 0.836614 | 8.438046e-57 | -8.615850e-47 |
| Msa0608940 | Msa1440160 | 0.825568 | 4.367275e-54 | -8.615850e-47 |
| Msa0617470 | Msa1440160 | 0.801437 | 9.010168e-49 | -8.615850e-47 |
| Msa0619480 | Msa1440160 | 0.810219 | 1.285238e-50 | -8.615850e-47 |
| Msa0626890 | Msa1440160 | 0.807778 | 4.280728e-50 | -8.615850e-47 |
| Msa0635070 | Msa1440160 | 0.800645 | 1.307478e-48 | -8.615850e-47 |
| Msa0639630 | Msa1440160 | 0.864980 | 8.226895e-65 | -8.615850e-47 |
| Msa0639640 | Msa1440160 | 0.886483 | 3.289856e-72 | -8.615850e-47 |
| Msa0642150 | Msa1440160 | 0.802168 | 6.375330e-49 | -8.615850e-47 |
| Msa0647860 | Msa1440160 | 0.829592 | 4.723281e-55 | -8.615850e-47 |
| Msa0649530 | Msa1440160 | 0.829567 | 4.790370e-55 | -8.615850e-47 |
| Msa0657860 | Msa1440160 | 0.805567 | 1.254530e-49 | -8.615850e-47 |
| Msa0658920 | Msa1440160 | 0.851133 | 1.081932e-60 | -8.615850e-47 |
| Msa0659640 | Msa1440160 | 0.801403 | 9.155626e-49 | -8.615850e-47 |
| Msa0665010 | Msa1440160 | 0.834078 | 3.690040e-56 | -8.615850e-47 |
| Msa0665040 | Msa1440160 | 0.816750 | 4.707367e-52 | -8.615850e-47 |
| Msa0677460 | Msa1440160 | 0.850213 | 1.963940e-60 | -8.615850e-47 |
| Msa0690580 | Msa1440160 | 0.828320 | 9.601070e-55 | -8.615850e-47 |
| Msa0691740 | Msa1440160 | 0.836360 | 9.795031e-57 | -8.615850e-47 |
| Msa0700250 | Msa1440160 | 0.813187 | 2.905616e-51 | -8.615850e-47 |
| Msa0704350 | Msa1440160 | 0.830234 | 3.293894e-55 | -8.615850e-47 |
| Msa0704430 | Msa1440160 | 0.850132 | 2.069266e-60 | -8.615850e-47 |
| Msa0712670 | Msa1440160 | 0.811571 | 6.548780e-51 | -8.615850e-47 |
| Msa0714060 | Msa1440160 | 0.824429 | 8.110184e-54 | -8.615850e-47 |
| Msa0714200 | Msa1440160 | 0.824993 | 5.972289e-54 | -8.615850e-47 |
| Msa0729780 | Msa1440160 | 0.814846 | 1.251250e-51 | -8.615850e-47 |
| Msa0738600 | Msa1440160 | 0.813254 | 2.809455e-51 | -8.615850e-47 |
| Msa0741600 | Msa1440160 | 0.801610 | 8.301597e-49 | -8.615850e-47 |
| Msa0747660 | Msa1440160 | 0.804092 | 2.550255e-49 | -8.615850e-47 |
| Msa0748980 | Msa1440160 | 0.802341 | 5.874718e-49 | -8.615850e-47 |
| Msa0752830 | Msa1440160 | 0.808720 | 2.696688e-50 | -8.615850e-47 |
| Msa0756440 | Msa1440160 | 0.817796 | 2.738830e-52 | -8.615850e-47 |
| Msa0756940 | Msa1440160 | 0.822234 | 2.642131e-53 | -8.615850e-47 |
| Msa0818950 | Msa1440160 | 0.817450 | 3.277395e-52 | -8.615850e-47 |
| Msa0835550 | Msa1440160 | 0.814987 | 1.164343e-51 | -8.615850e-47 |
| Msa0836510 | Msa1440160 | 0.820550 | 6.465422e-53 | -8.615850e-47 |
| Msa0136520 | Msa1440160 | 0.813540 | 2.430797e-51 | -8.615850e-47 |
| Msa0138380 | Msa1440160 | 0.806952 | 6.406362e-50 | -8.615850e-47 |
| Msa0143360 | Msa1440160 | 0.822549 | 2.232420e-53 | -8.615850e-47 |
| Msa0155500 | Msa1440160 | 0.820978 | 5.153475e-53 | -8.615850e-47 |
| Msa0160650 | Msa1440160 | 0.822181 | 2.716972e-53 | -8.615850e-47 |
| Msa0184030 | Msa1440160 | 0.810323 | 1.220285e-50 | -8.615850e-47 |
| Msa0184850 | Msa1440160 | 0.804961 | 1.679818e-49 | -8.615850e-47 |
| Msa0187560 | Msa1440160 | 0.809223 | 2.103895e-50 | -8.615850e-47 |
| Msa0197600 | Msa1440160 | 0.819520 | 1.112190e-52 | -8.615850e-47 |
| Msa0198140 | Msa1440160 | 0.817690 | 2.893149e-52 | -8.615850e-47 |
| Msa0198220 | Msa1440160 | 0.818183 | 2.238895e-52 | -8.615850e-47 |
| Msa0201910 | Msa1440160 | 0.807580 | 4.716670e-50 | -8.615850e-47 |
| Msa0221940 | Msa1440160 | 0.806525 | 7.886947e-50 | -8.615850e-47 |
| Msa1244650 | Msa1440160 | 0.812051 | 5.149630e-51 | -8.615850e-47 |
| Msa1245300 | Msa1440160 | 0.818214 | 2.203255e-52 | -8.615850e-47 |
| Msa1260240 | Msa1440160 | 0.814204 | 1.735729e-51 | -8.615850e-47 |
| Msa1260310 | Msa1440160 | 0.809527 | 1.810468e-50 | -8.615850e-47 |
| Msa1293580 | Msa1440160 | 0.839497 | 1.529904e-57 | -8.615850e-47 |
| Msa1296610 | Msa1440160 | 0.814696 | 1.350750e-51 | -8.615850e-47 |
| Msa1302920 | Msa1440160 | 0.800609 | 1.329997e-48 | -8.615850e-47 |
| Msa1320660 | Msa1440160 | 0.808212 | 3.459795e-50 | -8.615850e-47 |
| Msa1325810 | Msa1440160 | 0.814806 | 1.277201e-51 | -8.615850e-47 |
| Msa1329020 | Msa1440160 | 0.803222 | 3.863389e-49 | -8.615850e-47 |
| Msa1329660 | Msa1440160 | 0.802616 | 5.155721e-49 | -8.615850e-47 |
| Msa1329820 | Msa1440160 | 0.809994 | 1.436700e-50 | -8.615850e-47 |
| Msa1330910 | Msa1440160 | 0.824920 | 6.212925e-54 | -8.615850e-47 |
| Msa1343540 | Msa1440160 | 0.818968 | 1.486285e-52 | -8.615850e-47 |
| Msa0372990 | Msa1440160 | 0.807501 | 4.901803e-50 | -8.615850e-47 |
| Msa0373110 | Msa1440160 | 0.878121 | 3.627674e-69 | -8.615850e-47 |
| Msa0379720 | Msa1440160 | 0.825934 | 3.574736e-54 | -8.615850e-47 |
| Msa0404880 | Msa1440160 | 0.809877 | 1.523020e-50 | -8.615850e-47 |
| Msa0413590 | Msa1440160 | 0.899198 | 2.512269e-77 | -8.615850e-47 |
| Msa0415200 | Msa1440160 | 0.839592 | 1.444791e-57 | -8.615850e-47 |
| Msa0421390 | Msa1440160 | 0.819007 | 1.455598e-52 | -8.615850e-47 |
| Msa0421480 | Msa1440160 | 0.833531 | 5.054728e-56 | -8.615850e-47 |
| Msa0429100 | Msa1440160 | 0.825220 | 5.277772e-54 | -8.615850e-47 |
| Msa0429130 | Msa1440160 | 0.816114 | 6.533942e-52 | -8.615850e-47 |
| Msa0431390 | Msa1440160 | 0.809615 | 1.733222e-50 | -8.615850e-47 |
| Msa0431940 | Msa1440160 | 0.826677 | 2.378726e-54 | -8.615850e-47 |
| Msa0453310 | Msa1440160 | 0.828201 | 1.025325e-54 | -8.615850e-47 |
| Msa0458690 | Msa1440160 | 0.888669 | 4.809155e-73 | -8.615850e-47 |
| Msa0467480 | Msa1440160 | 0.869401 | 3.184228e-66 | -8.615850e-47 |
| Msa0468050 | Msa1440160 | -0.811341 | 7.349141e-51 | -8.615850e-47 |
| Msa0481620 | Msa1440160 | 0.805843 | 1.097569e-49 | -8.615850e-47 |
| Msa0983030 | Msa1440160 | 0.840337 | 9.237494e-58 | -8.615850e-47 |
| Msa0995660 | Msa1440160 | 0.826984 | 2.008977e-54 | -8.615850e-47 |
| Msa0995670 | Msa1440160 | 0.830263 | 3.239897e-55 | -8.615850e-47 |
| Msa0998940 | Msa1440160 | 0.875676 | 2.553253e-68 | -8.615850e-47 |
| Msa1038420 | Msa1440160 | 0.804361 | 2.241871e-49 | -8.615850e-47 |
| Msa1038570 | Msa1440160 | 0.814571 | 1.439408e-51 | -8.615850e-47 |
| Msa1038580 | Msa1440160 | 0.818154 | 2.272578e-52 | -8.615850e-47 |
| Msa1038610 | Msa1440160 | 0.824462 | 7.968082e-54 | -8.615850e-47 |
| Msa1042380 | Msa1440160 | 0.819090 | 1.393683e-52 | -8.615850e-47 |
| Msa1044450 | Msa1440160 | 0.802530 | 5.371067e-49 | -8.615850e-47 |
| Msa1050320 | Msa1440160 | 0.816281 | 5.997333e-52 | -8.615850e-47 |
| Msa1072770 | Msa1440160 | 0.812307 | 4.528421e-51 | -8.615850e-47 |
| Msa1090020 | Msa1440160 | 0.802033 | 6.795783e-49 | -8.615850e-47 |
| Msa0240290 | Msa1440160 | 0.817234 | 3.665857e-52 | -8.615850e-47 |
| Msa0240460 | Msa1440160 | 0.804923 | 1.711228e-49 | -8.615850e-47 |
| Msa0244370 | Msa1440160 | 0.817922 | 2.564977e-52 | -8.615850e-47 |
| Msa0263470 | Msa1440160 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0278340 | Msa1440160 | 0.816918 | 4.315465e-52 | -8.615850e-47 |
| Msa0282880 | Msa1440160 | 0.809366 | 1.960360e-50 | -8.615850e-47 |
| Msa0321180 | Msa1440160 | 0.811013 | 8.658396e-51 | -8.615850e-47 |
| Msa0321200 | Msa1440160 | 0.814302 | 1.651367e-51 | -8.615850e-47 |
| Msa0324390 | Msa1440160 | 0.818863 | 1.569800e-52 | -8.615850e-47 |
| Msa0327870 | Msa1440160 | 0.825837 | 3.769536e-54 | -8.615850e-47 |
| Msa0338610 | Msa1440160 | 0.812962 | 3.255998e-51 | -8.615850e-47 |
| Msa0343200 | Msa1440160 | 0.821099 | 4.833355e-53 | -8.615850e-47 |
| Msa0343460 | Msa1440160 | 0.847291 | 1.269292e-59 | -8.615850e-47 |
| Msa0361040 | Msa1440160 | 0.820557 | 6.440673e-53 | -8.615850e-47 |
| Msa1122480 | Msa1440160 | 0.805693 | 1.180362e-49 | -8.615850e-47 |
| Msa1125100 | Msa1440160 | 0.825749 | 3.955572e-54 | -8.615850e-47 |
| Msa1125150 | Msa1440160 | 0.822488 | 2.306288e-53 | -8.615850e-47 |
| Msa1129130 | Msa1440160 | 0.806386 | 8.437717e-50 | -8.615850e-47 |
| Msa1129160 | Msa1440160 | 0.811873 | 5.629787e-51 | -8.615850e-47 |
| Msa1129320 | Msa1440160 | 0.803742 | 3.014850e-49 | -8.615850e-47 |
| Msa1129470 | Msa1440160 | 0.809465 | 1.867373e-50 | -8.615850e-47 |
| Msa1147600 | Msa1440160 | 0.807481 | 4.948862e-50 | -8.615850e-47 |
| Msa1152500 | Msa1440160 | 0.802334 | 5.894220e-49 | -8.615850e-47 |
| Msa1161120 | Msa1440160 | 0.800778 | 1.228649e-48 | -8.615850e-47 |
| Msa1177360 | Msa1440160 | 0.802401 | 5.709443e-49 | -8.615850e-47 |
| Msa1186010 | Msa1440160 | 0.809346 | 1.980227e-50 | -8.615850e-47 |
| Msa1190980 | Msa1440160 | 0.832708 | 8.104170e-56 | -8.615850e-47 |
| Msa1203840 | Msa1440160 | 0.838530 | 2.722622e-57 | -8.615850e-47 |
| Msa1203860 | Msa1440160 | 0.815833 | 7.547663e-52 | -8.615850e-47 |
| Msa1204390 | Msa1440160 | 0.806608 | 7.574278e-50 | -8.615850e-47 |
| Msa1211100 | Msa1440160 | 0.810094 | 1.367359e-50 | -8.615850e-47 |
| Msa1211120 | Msa1440160 | 0.808405 | 3.147512e-50 | -8.615850e-47 |
| Msa1211280 | Msa1440160 | 0.807213 | 5.642198e-50 | -8.615850e-47 |
| Msa1216700 | Msa1440160 | 0.809193 | 2.135556e-50 | -8.615850e-47 |
| Msa1216900 | Msa1440160 | 0.805481 | 1.307263e-49 | -8.615850e-47 |
| Msa0483090 | Msa1440160 | 0.810542 | 1.094332e-50 | -8.615850e-47 |
| Msa0515400 | Msa1440160 | 0.810298 | 1.235796e-50 | -8.615850e-47 |
| Msa0515420 | Msa1440160 | 0.818959 | 1.492812e-52 | -8.615850e-47 |
| Msa0520810 | Msa1440160 | 0.813624 | 2.329130e-51 | -8.615850e-47 |
| Msa0524730 | Msa1440160 | 0.816952 | 4.241664e-52 | -8.615850e-47 |
| Msa0542330 | Msa1440160 | 0.864008 | 1.656307e-64 | -8.615850e-47 |
| Msa0546020 | Msa1440160 | 0.810787 | 9.689183e-51 | -8.615850e-47 |
| Msa0555510 | Msa1440160 | 0.848460 | 6.045247e-60 | -8.615850e-47 |
| Msa0565320 | Msa1440160 | 0.800814 | 1.207742e-48 | -8.615850e-47 |
| Msa0568050 | Msa1440160 | 0.837969 | 3.797586e-57 | -8.615850e-47 |
| Msa0569630 | Msa1440160 | 0.816138 | 6.453673e-52 | -8.615850e-47 |
| Msa0584590 | Msa1440160 | 0.903012 | 5.383002e-79 | -8.615850e-47 |
| Msa0587060 | Msa1440160 | 0.827993 | 1.150570e-54 | -8.615850e-47 |
| Msa0595240 | Msa1440160 | 0.822363 | 2.465275e-53 | -8.615850e-47 |
| Msa0600500 | Msa1440160 | 0.866729 | 2.303750e-65 | -8.615850e-47 |
| Msa0848980 | Msa1440160 | 0.800633 | 1.315319e-48 | -8.615850e-47 |
| Msa0864730 | Msa1440160 | 0.801158 | 1.027336e-48 | -8.615850e-47 |
| Msa0876150 | Msa1440160 | 0.803289 | 3.743247e-49 | -8.615850e-47 |
| Msa0895850 | Msa1440160 | 0.802320 | 5.931933e-49 | -8.615850e-47 |
| Msa0899080 | Msa1440160 | 0.815105 | 1.096280e-51 | -8.615850e-47 |
| Msa0927890 | Msa1440160 | 0.850686 | 1.446177e-60 | -8.615850e-47 |
| Msa0951770 | Msa1440160 | 0.819758 | 9.817525e-53 | -8.615850e-47 |
| Msa0961230 | Msa1440160 | 0.812986 | 3.217261e-51 | -8.615850e-47 |
| Msa0967250 | Msa1440160 | 0.859455 | 4.088610e-63 | -8.615850e-47 |
| Msa0967260 | Msa1440160 | 0.850538 | 1.591205e-60 | -8.615850e-47 |
| Msa0968960 | Msa1440160 | 0.835535 | 1.586257e-56 | -8.615850e-47 |
| Msa0975460 | Msa1440160 | 0.805064 | 1.598374e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440160 | MtrunA17_Chr3g0106111 | 99.060 | 319 | 3 | 0 | 1 | 319 | 1 | 319 | 0.0 | 651 |
| Msa1440160 | MtrunA17_Chr5g0431311 | 69.279 | 319 | 98 | 0 | 1 | 319 | 1 | 319 | 1.99e-174 | 486 |
| Msa1440160 | MtrunA17_Chr2g0291541 | 47.352 | 321 | 159 | 4 | 5 | 319 | 10 | 326 | 1.78e-106 | 314 |
| Msa1440160 | MtrunA17_Chr3g0077231 | 43.302 | 321 | 176 | 5 | 2 | 319 | 3 | 320 | 7.35e-88 | 266 |
| Msa1440160 | MtrunA17_Chr3g0077221 | 43.492 | 315 | 172 | 5 | 5 | 316 | 10 | 321 | 3.31e-86 | 262 |
| Msa1440160 | MtrunA17_Chr4g0001321 | 43.354 | 316 | 172 | 3 | 3 | 317 | 15 | 324 | 1.42e-81 | 250 |
| Msa1440160 | MtrunA17_Chr2g0333781 | 42.722 | 316 | 174 | 3 | 3 | 317 | 18 | 327 | 2.11e-79 | 245 |
| Msa1440160 | MtrunA17_Chr4g0039311 | 38.608 | 316 | 190 | 4 | 3 | 316 | 9 | 322 | 3.44e-75 | 234 |
| Msa1440160 | MtrunA17_Chr8g0364051 | 38.245 | 319 | 192 | 4 | 3 | 319 | 6 | 321 | 3.12e-74 | 231 |
| Msa1440160 | MtrunA17_Chr8g0363831 | 37.931 | 319 | 193 | 4 | 3 | 319 | 7 | 322 | 2.00e-73 | 229 |
| Msa1440160 | MtrunA17_Chr4g0002661 | 38.365 | 318 | 192 | 2 | 2 | 319 | 10 | 323 | 1.31e-72 | 227 |
| Msa1440160 | MtrunA17_Chr4g0039321 | 37.224 | 317 | 193 | 5 | 3 | 316 | 7 | 320 | 7.76e-70 | 220 |
| Msa1440160 | MtrunA17_Chr2g0331211 | 37.500 | 320 | 194 | 4 | 1 | 317 | 1 | 317 | 2.79e-69 | 219 |
| Msa1440160 | MtrunA17_Chr1g0155411 | 37.846 | 325 | 193 | 6 | 1 | 319 | 4 | 325 | 2.72e-68 | 216 |
| Msa1440160 | MtrunA17_Chr4g0002961 | 38.050 | 318 | 193 | 2 | 2 | 319 | 10 | 323 | 2.56e-65 | 208 |
| Msa1440160 | MtrunA17_Chr5g0423551 | 34.062 | 320 | 200 | 3 | 6 | 319 | 5 | 319 | 1.34e-64 | 206 |
| Msa1440160 | MtrunA17_Chr1g0155431 | 35.866 | 329 | 194 | 7 | 1 | 319 | 4 | 325 | 1.37e-64 | 207 |
| Msa1440160 | MtrunA17_Chr7g0245741 | 36.474 | 329 | 185 | 9 | 5 | 319 | 8 | 326 | 2.44e-59 | 193 |
| Msa1440160 | MtrunA17_Chr7g0245671 | 35.347 | 331 | 189 | 11 | 5 | 319 | 8 | 329 | 2.83e-54 | 180 |
| Msa1440160 | MtrunA17_Chr7g0245691 | 35.542 | 332 | 188 | 11 | 5 | 319 | 8 | 330 | 5.46e-54 | 179 |
| Msa1440160 | MtrunA17_Chr7g0245731 | 34.356 | 326 | 190 | 9 | 5 | 316 | 58 | 373 | 5.07e-53 | 178 |
| Msa1440160 | MtrunA17_Chr7g0245631 | 33.851 | 322 | 203 | 7 | 5 | 319 | 8 | 326 | 5.72e-51 | 171 |
| Msa1440160 | MtrunA17_Chr7g0245641 | 34.328 | 335 | 187 | 12 | 5 | 319 | 45 | 366 | 3.15e-50 | 171 |
| Msa1440160 | MtrunA17_Chr4g0048961 | 32.143 | 336 | 198 | 9 | 3 | 318 | 12 | 337 | 1.50e-49 | 168 |
| Msa1440160 | MtrunA17_Chr4g0042101 | 34.682 | 346 | 177 | 12 | 6 | 319 | 25 | 353 | 6.18e-49 | 167 |
| Msa1440160 | MtrunA17_Chr4g0010991 | 31.343 | 335 | 199 | 10 | 4 | 319 | 7 | 329 | 1.28e-47 | 162 |
| Msa1440160 | MtrunA17_Chr7g0245711 | 31.507 | 292 | 177 | 8 | 41 | 319 | 7 | 288 | 2.81e-38 | 137 |
| Msa1440160 | MtrunA17_Chr2g0281991 | 31.085 | 341 | 197 | 12 | 5 | 317 | 8 | 338 | 7.75e-36 | 132 |
| Msa1440160 | MtrunA17_Chr2g0282001 | 28.994 | 338 | 208 | 9 | 5 | 317 | 7 | 337 | 8.55e-33 | 124 |
| Msa1440160 | MtrunA17_Chr2g0282011 | 31.176 | 340 | 198 | 11 | 5 | 317 | 8 | 338 | 8.78e-33 | 124 |
| Msa1440160 | MtrunA17_Chr7g0275521 | 30.383 | 339 | 203 | 13 | 5 | 317 | 7 | 338 | 2.50e-31 | 120 |
| Msa1440160 | MtrunA17_Chr5g0411071 | 29.316 | 307 | 189 | 10 | 2 | 299 | 9 | 296 | 3.32e-31 | 119 |
| Msa1440160 | MtrunA17_Chr6g0450211 | 28.346 | 254 | 172 | 6 | 5 | 252 | 55 | 304 | 7.83e-23 | 97.4 |
| Msa1440160 | MtrunA17_Chr3g0080551 | 36.111 | 108 | 66 | 3 | 101 | 205 | 17 | 124 | 1.01e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440160 | AT5G58490.1 | 65.714 | 315 | 108 | 0 | 5 | 319 | 9 | 323 | 4.15e-161 | 452 |
| Msa1440160 | AT2G02400.1 | 47.799 | 318 | 162 | 2 | 3 | 319 | 4 | 318 | 1.42e-111 | 327 |
| Msa1440160 | AT1G51410.1 | 43.750 | 320 | 174 | 5 | 3 | 319 | 7 | 323 | 5.27e-88 | 267 |
| Msa1440160 | AT5G19440.1 | 41.509 | 318 | 182 | 4 | 3 | 318 | 8 | 323 | 2.40e-84 | 257 |
| Msa1440160 | AT1G09480.2 | 41.066 | 319 | 184 | 4 | 3 | 319 | 6 | 322 | 5.73e-83 | 254 |
| Msa1440160 | AT1G09480.1 | 41.066 | 319 | 184 | 4 | 3 | 319 | 53 | 369 | 1.69e-82 | 254 |
| Msa1440160 | AT1G09510.1 | 41.066 | 319 | 184 | 4 | 3 | 319 | 6 | 322 | 5.77e-82 | 251 |
| Msa1440160 | AT1G09490.1 | 37.812 | 320 | 193 | 5 | 3 | 319 | 6 | 322 | 1.23e-77 | 240 |
| Msa1440160 | AT1G15950.3 | 42.089 | 316 | 176 | 3 | 3 | 317 | 11 | 320 | 3.00e-77 | 240 |
| Msa1440160 | AT1G15950.1 | 42.089 | 316 | 176 | 3 | 3 | 317 | 11 | 320 | 3.00e-77 | 240 |
| Msa1440160 | AT1G66800.1 | 40.881 | 318 | 182 | 4 | 3 | 319 | 6 | 318 | 5.97e-77 | 238 |
| Msa1440160 | AT1G15950.2 | 42.345 | 307 | 170 | 3 | 3 | 308 | 11 | 311 | 1.60e-74 | 233 |
| Msa1440160 | AT1G09500.1 | 38.629 | 321 | 192 | 5 | 3 | 319 | 6 | 325 | 1.55e-73 | 230 |
| Msa1440160 | AT2G33590.1 | 39.873 | 316 | 185 | 3 | 5 | 319 | 9 | 320 | 2.81e-71 | 224 |
| Msa1440160 | AT1G80820.1 | 40.190 | 316 | 182 | 4 | 3 | 317 | 6 | 315 | 1.03e-70 | 223 |
| Msa1440160 | AT1G15950.5 | 43.165 | 278 | 149 | 3 | 3 | 280 | 11 | 279 | 5.06e-70 | 219 |
| Msa1440160 | AT1G15950.6 | 43.820 | 267 | 144 | 2 | 3 | 269 | 11 | 271 | 1.78e-69 | 218 |
| Msa1440160 | AT1G15950.4 | 43.273 | 275 | 147 | 3 | 3 | 277 | 11 | 276 | 4.95e-69 | 217 |
| Msa1440160 | AT1G09500.3 | 39.706 | 272 | 161 | 3 | 3 | 272 | 6 | 276 | 4.95e-69 | 216 |
| Msa1440160 | AT4G35420.1 | 36.760 | 321 | 190 | 6 | 5 | 319 | 8 | 321 | 2.44e-66 | 211 |
| Msa1440160 | AT1G80820.2 | 41.948 | 267 | 149 | 3 | 3 | 269 | 6 | 266 | 1.60e-63 | 202 |
| Msa1440160 | AT2G33600.1 | 38.291 | 316 | 190 | 3 | 5 | 319 | 9 | 320 | 6.33e-62 | 200 |
| Msa1440160 | AT1G68540.1 | 33.125 | 320 | 203 | 4 | 7 | 319 | 6 | 321 | 1.46e-60 | 196 |
| Msa1440160 | AT1G76470.1 | 35.625 | 320 | 201 | 3 | 1 | 317 | 3 | 320 | 1.06e-59 | 194 |
| Msa1440160 | AT1G09490.2 | 34.266 | 286 | 182 | 5 | 37 | 319 | 9 | 291 | 1.93e-59 | 192 |
| Msa1440160 | AT5G42800.1 | 34.675 | 323 | 202 | 6 | 3 | 319 | 6 | 325 | 2.67e-56 | 187 |
| Msa1440160 | AT1G09500.2 | 35.540 | 287 | 180 | 5 | 37 | 319 | 6 | 291 | 1.61e-55 | 182 |
| Msa1440160 | AT1G25460.1 | 34.056 | 323 | 194 | 8 | 7 | 319 | 6 | 319 | 1.31e-54 | 181 |
| Msa1440160 | AT1G61720.1 | 33.234 | 334 | 201 | 9 | 2 | 319 | 10 | 337 | 1.60e-48 | 166 |
| Msa1440160 | AT1G15950.7 | 40.090 | 222 | 132 | 1 | 97 | 317 | 1 | 222 | 1.22e-46 | 158 |
| Msa1440160 | AT4G27250.1 | 31.832 | 333 | 196 | 12 | 4 | 311 | 12 | 338 | 1.10e-41 | 148 |
| Msa1440160 | AT4G27250.2 | 31.385 | 325 | 198 | 11 | 4 | 311 | 12 | 328 | 2.65e-40 | 144 |
| Msa1440160 | AT2G23910.2 | 32.669 | 251 | 155 | 5 | 6 | 252 | 11 | 251 | 3.13e-39 | 139 |
| Msa1440160 | AT2G23910.3 | 32.669 | 251 | 155 | 5 | 6 | 252 | 11 | 251 | 3.16e-39 | 139 |
| Msa1440160 | AT2G23910.1 | 32.669 | 251 | 155 | 5 | 6 | 252 | 11 | 251 | 6.52e-39 | 139 |
| Msa1440160 | AT2G45400.1 | 30.368 | 326 | 215 | 8 | 5 | 319 | 40 | 364 | 1.36e-38 | 140 |
| Msa1440160 | AT4G30470.1 | 31.746 | 252 | 163 | 4 | 2 | 252 | 7 | 250 | 3.46e-35 | 130 |
| Msa1440160 | AT1G68540.2 | 31.754 | 211 | 135 | 3 | 114 | 319 | 8 | 214 | 8.67e-35 | 126 |
| Msa1440160 | AT2G45400.2 | 30.357 | 280 | 184 | 7 | 5 | 274 | 40 | 318 | 2.01e-33 | 125 |
| Msa1440160 | AT2G23910.4 | 32.057 | 209 | 128 | 5 | 48 | 252 | 19 | 217 | 2.11e-28 | 111 |
| Msa1440160 | AT2G45400.3 | 28.146 | 302 | 204 | 8 | 27 | 319 | 10 | 307 | 8.95e-26 | 104 |
| Msa1440160 | AT2G45400.4 | 31.944 | 216 | 137 | 6 | 5 | 211 | 40 | 254 | 4.71e-25 | 101 |
| Msa1440160 | AT5G14700.1 | 29.582 | 311 | 190 | 11 | 5 | 295 | 55 | 356 | 1.36e-23 | 99.8 |
| Msa1440160 | AT5G14700.2 | 31.081 | 222 | 139 | 7 | 2 | 212 | 52 | 270 | 2.97e-17 | 80.9 |
Find 113 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGCTTTGGCACATATTT+TGG | 0.069908 | tig0028975:+10888 | Msa1440160:CDS |
| ATAAATGCAGAAGCAAATTT+TGG | 0.164485 | tig0028975:+7260 | Msa1440160:intron |
| TCAAAGAAGTTGATTGATTT+AGG | 0.165827 | tig0028975:+11490 | Msa1440160:CDS |
| GGCTTTGCTAAATCAATTAT+TGG | 0.184749 | tig0028975:-11879 | None:intergenic |
| GGGATATTTGGATGTGAAAA+AGG | 0.244171 | tig0028975:+11955 | Msa1440160:three_prime_UTR |
| TATAACTAGCATGTTAAATA+AGG | 0.245679 | tig0028975:+11699 | Msa1440160:three_prime_UTR |
| AGAGGTTTGGTTTAACTTCT+TGG | 0.275813 | tig0028975:+11571 | Msa1440160:exon |
| AATTCTTATATGTGAATTCT+TGG | 0.276009 | tig0028975:+11762 | Msa1440160:three_prime_UTR |
| TACTTTGCCACATTATATTC+AGG | 0.287776 | tig0028975:-11003 | None:intergenic |
| CAAAGAAGTTGATTGATTTA+GGG | 0.297802 | tig0028975:+11491 | Msa1440160:CDS |
| TACAAAGTGACATGTGATTA+TGG | 0.297957 | tig0028975:+11621 | Msa1440160:three_prime_UTR |
| ATAACAAAATTAAGAATAAA+AGG | 0.306818 | tig0028975:-11900 | None:intergenic |
| GCCATGCTTGAGTTAATTCT+TGG | 0.327496 | tig0028975:-9829 | None:intergenic |
| TCTGCTAGTGTCTTTGCAAT+GGG | 0.342685 | tig0028975:-9721 | None:intergenic |
| TTGACTTCACCGATGATGTT+AGG | 0.346694 | tig0028975:-7136 | None:intergenic |
| TCCTTGATAATTTGTTCTGC+TGG | 0.356834 | tig0028975:-11526 | None:intergenic |
| ATTAACCCTGGTACAGCTTT+GGG | 0.373012 | tig0028975:+9793 | Msa1440160:CDS |
| TCCGTAAGAACTAGCATAAC+TGG | 0.378382 | tig0028975:-6481 | None:intergenic |
| AAGTTCTTCACACGAGAGTT+TGG | 0.379813 | tig0028975:-6576 | None:intergenic |
| GATTAACCCTGGTACAGCTT+TGG | 0.381567 | tig0028975:+9792 | Msa1440160:CDS |
| TTCTGCTAGTGTCTTTGCAA+TGG | 0.381819 | tig0028975:-9722 | None:intergenic |
| CCAGCGGAGCCATCGGATCA+TGG | 0.386978 | tig0028975:+6745 | Msa1440160:CDS |
| AGATTAAGGCAGAGGATTGT+TGG | 0.391069 | tig0028975:+7403 | Msa1440160:CDS |
| TTGGAATCTTCTTGTACTGC+TGG | 0.397310 | tig0028975:-11860 | None:intergenic |
| TAGAGATTCCATGTATATAT+AGG | 0.398244 | tig0028975:-6634 | None:intergenic |
| CCAACTAGGACTCGGTATAA+TGG | 0.405663 | tig0028975:-7370 | None:intergenic |
| ACCAGTTATGCTAGTTCTTA+CGG | 0.415281 | tig0028975:+6480 | Msa1440160:five_prime_UTR |
| TTGGCCAGCTGATAAGATTA+AGG | 0.419891 | tig0028975:+7389 | Msa1440160:CDS |
| TCAAGCATGGCTGTACTTGC+TGG | 0.420507 | tig0028975:+9841 | Msa1440160:CDS |
| ATTCTTATATGTGAATTCTT+GGG | 0.428051 | tig0028975:+11763 | Msa1440160:three_prime_UTR |
| CCATGATCCGATGGCTCCGC+TGG | 0.430877 | tig0028975:-6745 | None:intergenic |
| GACATATGAGGACTTCTTCA+TGG | 0.433121 | tig0028975:+10846 | Msa1440160:CDS |
| TTTACCGTTCCTTGAATTGC+CGG | 0.433514 | tig0028975:-7285 | None:intergenic |
| TTATGAAAGCGATGCATTGT+TGG | 0.437327 | tig0028975:-6599 | None:intergenic |
| TTGGATGCTGAAGAAACCTA+TGG | 0.438627 | tig0028975:+11590 | Msa1440160:three_prime_UTR |
| AATTTGTCTATTCTAATTGT+TGG | 0.439649 | tig0028975:+11833 | Msa1440160:three_prime_UTR |
| TTTGAGCAAAAGAAAGCATC+TGG | 0.442607 | tig0028975:+10913 | Msa1440160:CDS |
| ATAGTGGCTAACCAAGATCT+TGG | 0.454544 | tig0028975:-6815 | None:intergenic |
| GACAAAGCATTTAGAAGCAA+TGG | 0.459202 | tig0028975:+7009 | Msa1440160:CDS |
| TTAATTCTTGGTGGAATCAA+AGG | 0.461807 | tig0028975:-9817 | None:intergenic |
| CCATTATACCGAGTCCTAGT+TGG | 0.465016 | tig0028975:+7370 | Msa1440160:CDS |
| TTCTTTGCTCTCAACAATCC+AGG | 0.466991 | tig0028975:-11463 | None:intergenic |
| GGACGGTGTAGCCGCGTTCG+AGG | 0.468770 | tig0028975:-6782 | None:intergenic |
| TGGGAATTTGCTAAGGAGAC+TGG | 0.471676 | tig0028975:+9754 | Msa1440160:CDS |
| CATGCCACTATCCAAGATCT+TGG | 0.473034 | tig0028975:+6804 | Msa1440160:CDS |
| GTGTTTGAAGAGTAGAGGTT+TGG | 0.480993 | tig0028975:+11558 | Msa1440160:CDS |
| TTGAAGGTGGCTAAGGAAGC+AGG | 0.484089 | tig0028975:+7312 | Msa1440160:CDS |
| ACTTTGCCACATTATATTCA+GGG | 0.484954 | tig0028975:-11002 | None:intergenic |
| AAAGGGCCCAAAGCTGTACC+AGG | 0.486988 | tig0028975:-9799 | None:intergenic |
| GTTGAGTGTTTGAAGAGTAG+AGG | 0.490243 | tig0028975:+11553 | Msa1440160:CDS |
| AACGCCAGCACAACCTTTCA+CGG | 0.494810 | tig0028975:-7098 | None:intergenic |
| ATTCCATGTATATATAGGAC+TGG | 0.495734 | tig0028975:-6629 | None:intergenic |
| TGAATATTGCAAGGAAAAGA+AGG | 0.498896 | tig0028975:+7434 | Msa1440160:CDS |
| ATGCTTGAGTTAATTCTTGG+TGG | 0.500088 | tig0028975:-9826 | None:intergenic |
| TCCGATGGCTCCGCTGGCAC+CGG | 0.504784 | tig0028975:-6739 | None:intergenic |
| TGTAGCCGCGTTCGAGGAGG+AGG | 0.505144 | tig0028975:-6776 | None:intergenic |
| GCCGCCGTGAAAGGTTGTGC+TGG | 0.511093 | tig0028975:+7094 | Msa1440160:CDS |
| ACCGGTGCCAGCGGAGCCAT+CGG | 0.516306 | tig0028975:+6738 | Msa1440160:CDS |
| CAGCGGAGCCATCGGATCAT+GGG | 0.518564 | tig0028975:+6746 | Msa1440160:CDS |
| ATAACTAGCATGTTAAATAA+GGG | 0.519365 | tig0028975:+11700 | Msa1440160:three_prime_UTR |
| ATCTTATCAGCTGGCCAACT+AGG | 0.524012 | tig0028975:-7384 | None:intergenic |
| AGCTGGTTGGGAATTTGCTA+AGG | 0.526723 | tig0028975:+9747 | Msa1440160:CDS |
| ATACCGACGGATACTCAGCC+TGG | 0.529471 | tig0028975:+11445 | Msa1440160:CDS |
| AGCTGATAAGATTAAGGCAG+AGG | 0.531575 | tig0028975:+7395 | Msa1440160:CDS |
| TCAAAGTCAGTTTGTGTCAC+CGG | 0.536966 | tig0028975:+6720 | Msa1440160:CDS |
| TCCAGCAGAACAAATTATCA+AGG | 0.537697 | tig0028975:+11525 | Msa1440160:CDS |
| TAATTCTTGGTGGAATCAAA+GGG | 0.538145 | tig0028975:-9816 | None:intergenic |
| CTATTTAGTAATTCAAGATG+TGG | 0.541396 | tig0028975:-6669 | None:intergenic |
| TGGATGCTGAAGAAACCTAT+GGG | 0.543693 | tig0028975:+11591 | Msa1440160:three_prime_UTR |
| TGAGGACTTCTTCATGGGAA+TGG | 0.545045 | tig0028975:+10852 | Msa1440160:CDS |
| AGGAACGGTAAACGTGTTGA+AGG | 0.548861 | tig0028975:+7296 | Msa1440160:CDS |
| ATCTTGGATAGTGGCATGGA+CGG | 0.550916 | tig0028975:-6799 | None:intergenic |
| AGCAGGAGTGGAACGTGTGG+TGG | 0.554923 | tig0028975:+7329 | Msa1440160:CDS |
| GTACTTGCTGGTGTTCTCAA+AGG | 0.557883 | tig0028975:+9853 | Msa1440160:CDS |
| AAACGTGTTGAAGGTGGCTA+AGG | 0.558910 | tig0028975:+7305 | Msa1440160:CDS |
| TTCCATGTATATATAGGACT+GGG | 0.567567 | tig0028975:-6628 | None:intergenic |
| TCTGCCTTAATCTTATCAGC+TGG | 0.568032 | tig0028975:-7393 | None:intergenic |
| TTCCCAGTCCTATATATACA+TGG | 0.571103 | tig0028975:+6626 | Msa1440160:five_prime_UTR |
| TCTATCGCAGCCGCCGTGAA+AGG | 0.573872 | tig0028975:+7085 | Msa1440160:CDS |
| CTAACCAAGATCTTGGATAG+TGG | 0.575145 | tig0028975:-6808 | None:intergenic |
| GTTTGTGTCACCGGTGCCAG+CGG | 0.578206 | tig0028975:+6729 | Msa1440160:CDS |
| GGAACCGGCAATTCAAGGAA+CGG | 0.579782 | tig0028975:+7281 | Msa1440160:CDS |
| GGTGGCTAAGGAAGCAGGAG+TGG | 0.579803 | tig0028975:+7317 | Msa1440160:CDS |
| ACATATGAGGACTTCTTCAT+GGG | 0.583739 | tig0028975:+10847 | Msa1440160:CDS |
| GACGGACCTTGAATATTGCA+AGG | 0.588556 | tig0028975:+7425 | Msa1440160:CDS |
| GACACAAACTGACTTTGACA+TGG | 0.589619 | tig0028975:-6715 | None:intergenic |
| GCGAACCACCCATGATCCGA+TGG | 0.590987 | tig0028975:-6754 | None:intergenic |
| AGGTGATAAAGAGACATATG+AGG | 0.598022 | tig0028975:+10834 | Msa1440160:intron |
| CAAGATCTTGGATAGTGGCA+TGG | 0.604987 | tig0028975:-6803 | None:intergenic |
| TCAGCTGGCCAACTAGGACT+CGG | 0.609114 | tig0028975:-7378 | None:intergenic |
| CGGAGCCATCGGATCATGGG+TGG | 0.610944 | tig0028975:+6749 | Msa1440160:CDS |
| CTGCTAGTGTCTTTGCAATG+GGG | 0.611325 | tig0028975:-9720 | None:intergenic |
| CTTGCATGTCCTAACATCAT+CGG | 0.615491 | tig0028975:+7127 | Msa1440160:CDS |
| AGCAAAAGAAAGCATCTGGA+AGG | 0.619285 | tig0028975:+10917 | Msa1440160:CDS |
| ACCAAGAATTAACTCAAGCA+TGG | 0.623084 | tig0028975:+9828 | Msa1440160:CDS |
| TAAGGCAGAGGATTGTTGGA+CGG | 0.625388 | tig0028975:+7407 | Msa1440160:CDS |
| GTTATACCCTGAATATAATG+TGG | 0.637694 | tig0028975:+10996 | Msa1440160:CDS |
| CGGTGTAGCCGCGTTCGAGG+AGG | 0.648737 | tig0028975:-6779 | None:intergenic |
| CGATGATGTTAGGACATGCA+AGG | 0.649220 | tig0028975:-7126 | None:intergenic |
| GTTCGCCTCCTCCTCGAACG+CGG | 0.652562 | tig0028975:+6771 | Msa1440160:CDS |
| AACGGTAAACGTGTTGAAGG+TGG | 0.653176 | tig0028975:+7299 | Msa1440160:CDS |
| TAATTATTATAGGATACCGA+CGG | 0.657416 | tig0028975:+11432 | Msa1440160:intron |
| AAGCATTTAGAAGCAATGGA+AGG | 0.658324 | tig0028975:+7013 | Msa1440160:CDS |
| GGATGCTGAAGAAACCTATG+GGG | 0.658352 | tig0028975:+11592 | Msa1440160:three_prime_UTR |
| GATGTGGTGATGATTAACCC+TGG | 0.670169 | tig0028975:+9781 | Msa1440160:CDS |
| AATCCAGGCTGAGTATCCGT+CGG | 0.675345 | tig0028975:-11448 | None:intergenic |
| GGAAGCAGGAGTGGAACGTG+TGG | 0.679150 | tig0028975:+7326 | Msa1440160:CDS |
| ATCTGGAAGGCATTTGTGTG+TGG | 0.681001 | tig0028975:+10930 | Msa1440160:CDS |
| ACTAGGACTCGGTATAATGG+CGG | 0.696663 | tig0028975:-7367 | None:intergenic |
| CGGTGAAGTCAAAGACCCCG+AGG | 0.705107 | tig0028975:+7147 | Msa1440160:CDS |
| AAGGGCCCAAAGCTGTACCA+GGG | 0.707459 | tig0028975:-9798 | None:intergenic |
| GATGCTGAAGAAACCTATGG+GGG | 0.741861 | tig0028975:+11593 | Msa1440160:three_prime_UTR |
| GCCAGCACAACCTTTCACGG+CGG | 0.771411 | tig0028975:-7095 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAATAAAATTAAT+TGG | + | tig0028975:9392-9411 | Msa1440160:intron | 0.0% |
| !!! | TTTATTTTTTATATCAATAG+TGG | - | tig0028975:7598-7617 | None:intergenic | 10.0% |
| !! | TAAAGAATATTAAATATTGA+TGG | + | tig0028975:8928-8947 | Msa1440160:intron | 10.0% |
| !! | CTAAAAATTAAATGAAAATT+TGG | - | tig0028975:9624-9643 | None:intergenic | 10.0% |
| !! | TTAATAATAAAACTTTAATG+TGG | - | tig0028975:10600-10619 | None:intergenic | 10.0% |
| !!! | ATTTTTTTAAATTTTTTCTG+AGG | + | tig0028975:10634-10653 | Msa1440160:intron | 10.0% |
| !! | ATAACAAAATTAAGAATAAA+AGG | - | tig0028975:11903-11922 | None:intergenic | 10.0% |
| !!! | AAAATTTTAAGAAATTTGCA+TGG | + | tig0028975:7187-7206 | Msa1440160:intron | 15.0% |
| !! | GTTGTTTATAAAGTTATTAT+TGG | + | tig0028975:7789-7808 | Msa1440160:intron | 15.0% |
| !! | CTCAAAAGATATAAATATTT+AGG | - | tig0028975:7875-7894 | None:intergenic | 15.0% |
| !! | AAACCTAAATATAAAAGTTA+TGG | + | tig0028975:7926-7945 | Msa1440160:intron | 15.0% |
| !!! | GGAAATAAAATTTCTTATTT+TGG | - | tig0028975:8730-8749 | None:intergenic | 15.0% |
| !!! | GCTAATTATTTTTAAGTTTA+AGG | + | tig0028975:9895-9914 | Msa1440160:intron | 15.0% |
| !!! | TTAAGTTTAAGGTTTAAATT+TGG | + | tig0028975:9906-9925 | Msa1440160:intron | 15.0% |
| !! | TTAATTACATAAATCAAAGA+TGG | - | tig0028975:10299-10318 | None:intergenic | 15.0% |
| !! | ATCATAATCATATATAAGAT+TGG | - | tig0028975:10694-10713 | None:intergenic | 15.0% |
| !! | ATCTTATATATGATTATGAT+AGG | + | tig0028975:10694-10713 | Msa1440160:intron | 15.0% |
| !!! | ATGCAAATACTATATTTTTT+GGG | - | tig0028975:11188-11207 | None:intergenic | 15.0% |
| !!! | AATGCAAATACTATATTTTT+TGG | - | tig0028975:11189-11208 | None:intergenic | 15.0% |
| !! | ATTGTACGTTTAATTATTAT+AGG | + | tig0028975:11422-11441 | Msa1440160:intron | 15.0% |
| !! | TATTCATTTATTATCATGTG+AGG | - | tig0028975:6874-6893 | None:intergenic | 20.0% |
| !! | AACACCAAAATTAATTAATG+TGG | - | tig0028975:7229-7248 | None:intergenic | 20.0% |
| !!! | ACTTTAGAGACAAATAAAAA+GGG | - | tig0028975:7572-7591 | None:intergenic | 20.0% |
| !!! | AACTTTAGAGACAAATAAAA+AGG | - | tig0028975:7573-7592 | None:intergenic | 20.0% |
| !!! | TATCTTTTGAGAAAATTGTA+TGG | + | tig0028975:7884-7903 | Msa1440160:intron | 20.0% |
| !!! | TGTCCATAACTTTTATATTT+AGG | - | tig0028975:7932-7951 | None:intergenic | 20.0% |
| !! | AAATAAAAATGAATTAGGCT+AGG | - | tig0028975:8046-8065 | None:intergenic | 20.0% |
| !! | TCTACAATTCTTAATAATGT+AGG | - | tig0028975:8171-8190 | None:intergenic | 20.0% |
| !!! | AAGTTATTGACAACTTTTTT+TGG | + | tig0028975:8262-8281 | Msa1440160:intron | 20.0% |
| !!! | AGTTATTGACAACTTTTTTT+GGG | + | tig0028975:8263-8282 | Msa1440160:intron | 20.0% |
| !! | ATGAAAAATGAAAGAATGAA+AGG | + | tig0028975:8395-8414 | Msa1440160:intron | 20.0% |
| !! | TGAAAAATGAAAGAATGAAA+GGG | + | tig0028975:8396-8415 | Msa1440160:intron | 20.0% |
| !! | ATTGTTTAAGCATTTAAAAG+AGG | - | tig0028975:8810-8829 | None:intergenic | 20.0% |
| !! | TATTTGTGTAAAATGTCAAA+GGG | - | tig0028975:8907-8926 | None:intergenic | 20.0% |
| !! | ATATTTGTGTAAAATGTCAA+AGG | - | tig0028975:8908-8927 | None:intergenic | 20.0% |
| !! | ACATGAATTAAAGTATAAAG+AGG | + | tig0028975:9100-9119 | Msa1440160:intron | 20.0% |
| !! | TTATATTATATTCCAACATG+TGG | - | tig0028975:9601-9620 | None:intergenic | 20.0% |
| !! | ATTAAAAGTAAGTAGAAAGT+GGG | + | tig0028975:10021-10040 | Msa1440160:intron | 20.0% |
| !! | AACCAAAATAATTGCATATT+TGG | + | tig0028975:10330-10349 | Msa1440160:intron | 20.0% |
| !! | TATAACTAGCATGTTAAATA+AGG | + | tig0028975:11699-11718 | Msa1440160:three_prime_UTR | 20.0% |
| !! | ATAACTAGCATGTTAAATAA+GGG | + | tig0028975:11700-11719 | Msa1440160:three_prime_UTR | 20.0% |
| !! | AATTCTTATATGTGAATTCT+TGG | + | tig0028975:11762-11781 | Msa1440160:three_prime_UTR | 20.0% |
| !! | ATTCTTATATGTGAATTCTT+GGG | + | tig0028975:11763-11782 | Msa1440160:three_prime_UTR | 20.0% |
| !! | AATTTGTCTATTCTAATTGT+TGG | + | tig0028975:11833-11852 | Msa1440160:three_prime_UTR | 20.0% |
| !! | AATACAATCTCCATTTTATG+CGG | + | tig0028975:6505-6524 | Msa1440160:five_prime_UTR | 25.0% |
| !! | TTTTACATTACCGCATAAAA+TGG | - | tig0028975:6518-6537 | None:intergenic | 25.0% |
| ! | TAGAGATTCCATGTATATAT+AGG | - | tig0028975:6637-6656 | None:intergenic | 25.0% |
| ! | CTATTTAGTAATTCAAGATG+TGG | - | tig0028975:6672-6691 | None:intergenic | 25.0% |
| !!! | TCGTCTCAAATTTTTTGAAA+TGG | + | tig0028975:7045-7064 | Msa1440160:CDS | 25.0% |
| ! | AATAAATTGTTCTTGAACCT+CGG | - | tig0028975:7167-7186 | None:intergenic | 25.0% |
| !! | TTGCATGGTTCAATTTTATA+TGG | + | tig0028975:7202-7221 | Msa1440160:intron | 25.0% |
| !! | TGGTCCACATTAATTAATTT+TGG | + | tig0028975:7222-7241 | Msa1440160:intron | 25.0% |
| !! | ATAAATGCAGAAGCAAATTT+TGG | + | tig0028975:7260-7279 | Msa1440160:intron | 25.0% |
| !! | TCAATTTATAGCACTAGTTT+AGG | + | tig0028975:7650-7669 | Msa1440160:intron | 25.0% |
| !!! | ATTGATGATGTTCCAATTTT+TGG | + | tig0028975:7699-7718 | Msa1440160:intron | 25.0% |
| !!! | AAAAGTGTTTCGCTAAATTA+AGG | + | tig0028975:7757-7776 | Msa1440160:intron | 25.0% |
| ! | CATTTGTAAATCCAAAATAG+AGG | - | tig0028975:8378-8397 | None:intergenic | 25.0% |
| !! | TAGTTAGTGTTTTTCGTATA+TGG | - | tig0028975:8534-8553 | None:intergenic | 25.0% |
| !!! | TATGCATTTGACTTTTACTT+TGG | - | tig0028975:8751-8770 | None:intergenic | 25.0% |
| ! | AGATAAACGAAATATATCCA+AGG | + | tig0028975:8873-8892 | Msa1440160:intron | 25.0% |
| ! | GATAAACGAAATATATCCAA+GGG | + | tig0028975:8874-8893 | Msa1440160:intron | 25.0% |
| ! | GACCTCATTATTAAATAATG+AGG | + | tig0028975:9233-9252 | Msa1440160:intron | 25.0% |
| ! | AGCCTCATTATTTAATAATG+AGG | - | tig0028975:9238-9257 | None:intergenic | 25.0% |
| ! | GTGTCTAAACATTATACATA+TGG | - | tig0028975:9347-9366 | None:intergenic | 25.0% |
| !!! | ATTTGGCCATTTATTTTTAG+AGG | - | tig0028975:9518-9537 | None:intergenic | 25.0% |
| !! | AAATGGCCAAATTTTATTGA+TGG | + | tig0028975:9526-9545 | Msa1440160:intron | 25.0% |
| ! | TTAACCTTTCACATCATAAA+GGG | - | tig0028975:9556-9575 | None:intergenic | 25.0% |
| ! | TTTAACCTTTCACATCATAA+AGG | - | tig0028975:9557-9576 | None:intergenic | 25.0% |
| !!! | CTTATCAATTAATTTGCCAT+TGG | - | tig0028975:9670-9689 | None:intergenic | 25.0% |
| ! | CAATGGCAAATTAATTGATA+AGG | + | tig0028975:9668-9687 | Msa1440160:intron | 25.0% |
| ! | GATAAGGTTTACATTATTTG+TGG | + | tig0028975:9684-9703 | Msa1440160:intron | 25.0% |
| ! | GATTAAAAGTAAGTAGAAAG+TGG | + | tig0028975:10020-10039 | Msa1440160:intron | 25.0% |
| !! | TGCCAAATATGCAATTATTT+TGG | - | tig0028975:10335-10354 | None:intergenic | 25.0% |
| ! | ATAATTGCATATTTGGCATA+AGG | + | tig0028975:10337-10356 | Msa1440160:intron | 25.0% |
| !! | TTTTATAAGCTACTAGAATG+AGG | + | tig0028975:10774-10793 | Msa1440160:intron | 25.0% |
| ! | ATTTGGACCTTCTTATAATT+TGG | + | tig0028975:10798-10817 | Msa1440160:intron | 25.0% |
| ! | AATTTGGACCTTCTTATTAT+AGG | + | tig0028975:10814-10833 | Msa1440160:intron | 25.0% |
| ! | CTTTATCACCTATAATAAGA+AGG | - | tig0028975:10825-10844 | None:intergenic | 25.0% |
| !!! | TCATTTTAAAGACATAGCTT+TGG | + | tig0028975:10876-10895 | Msa1440160:CDS | 25.0% |
| !! | CTATAGTGATTTTGTGAATT+TGG | + | tig0028975:10966-10985 | Msa1440160:CDS | 25.0% |
| ! | TTGTAGAATATCCAAATCTA+AGG | + | tig0028975:11353-11372 | Msa1440160:intron | 25.0% |
| ! | TCTGTTATAAACCTTAGATT+TGG | - | tig0028975:11367-11386 | None:intergenic | 25.0% |
| !! | TCTAAGGTTTATAACAGATT+TGG | + | tig0028975:11369-11388 | Msa1440160:intron | 25.0% |
| ! | TAATTATTATAGGATACCGA+CGG | + | tig0028975:11432-11451 | Msa1440160:intron | 25.0% |
| !! | TCAAAGAAGTTGATTGATTT+AGG | + | tig0028975:11490-11509 | Msa1440160:CDS | 25.0% |
| !! | CAAAGAAGTTGATTGATTTA+GGG | + | tig0028975:11491-11510 | Msa1440160:CDS | 25.0% |
| !!! | ATTCTTGGGTTTTATAAGAT+TGG | + | tig0028975:11777-11796 | Msa1440160:three_prime_UTR | 25.0% |
| !!! | AAGTTTTTTCCAGCTAAAAA+TGG | + | tig0028975:11934-11953 | Msa1440160:three_prime_UTR | 25.0% |
| !!! | AGTTTTTTCCAGCTAAAAAT+GGG | + | tig0028975:11935-11954 | Msa1440160:three_prime_UTR | 25.0% |
| TTCCATGTATATATAGGACT+GGG | - | tig0028975:6631-6650 | None:intergenic | 30.0% | |
| ATTCCATGTATATATAGGAC+TGG | - | tig0028975:6632-6651 | None:intergenic | 30.0% | |
| CTTGTGCAATATACATATAG+TGG | - | tig0028975:6834-6853 | None:intergenic | 30.0% | |
| TTGTGACACATAATTTACAG+AGG | + | tig0028975:6976-6995 | Msa1440160:intron | 30.0% | |
| ATAAATTGTTCTTGAACCTC+GGG | - | tig0028975:7166-7185 | None:intergenic | 30.0% | |
| ! | TCTTTTCCTTGCAATATTCA+AGG | - | tig0028975:7434-7453 | None:intergenic | 30.0% |
| TGAATATTGCAAGGAAAAGA+AGG | + | tig0028975:7434-7453 | Msa1440160:CDS | 30.0% | |
| !! | TAGCGAAACACTTTTTGTAA+AGG | - | tig0028975:7752-7771 | None:intergenic | 30.0% |
| TTGTATGGCCAATTCTTATT+TGG | + | tig0028975:7899-7918 | Msa1440160:intron | 30.0% | |
| GTTTGTGACCAAATAAGAAT+TGG | - | tig0028975:7910-7929 | None:intergenic | 30.0% | |
| ! | CATGACGATGAATTCATTTT+GGG | + | tig0028975:8457-8476 | Msa1440160:intron | 30.0% |
| ! | TAGTGTTTTTCGTATATGGT+TGG | - | tig0028975:8530-8549 | None:intergenic | 30.0% |
| ATGAAACTCGTATGATTTGA+TGG | - | tig0028975:8614-8633 | None:intergenic | 30.0% | |
| ! | CGAGTTTCATATGAATTTTG+TGG | + | tig0028975:8624-8643 | Msa1440160:intron | 30.0% |
| !! | ATATGTTGACTCATCTAGTA+AGG | + | tig0028975:9153-9172 | Msa1440160:intron | 30.0% |
| CTTATAACTTACAGGTGAAT+CGG | - | tig0028975:9181-9200 | None:intergenic | 30.0% | |
| CTTACAACCTTATAACTTAC+AGG | - | tig0028975:9189-9208 | None:intergenic | 30.0% | |
| !!! | ATCTTGAGCTAGTCTTTTTA+TGG | + | tig0028975:9313-9332 | Msa1440160:intron | 30.0% |
| !!! | CCATTTATTTTTAGAGGAGT+TGG | - | tig0028975:9512-9531 | None:intergenic | 30.0% |
| ! | CCAACTCCTCTAAAAATAAA+TGG | + | tig0028975:9509-9528 | Msa1440160:intron | 30.0% |
| GGTACACCATCAATAAAATT+TGG | - | tig0028975:9535-9554 | None:intergenic | 30.0% | |
| AATAATTCATCACCACATGT+TGG | + | tig0028975:9586-9605 | Msa1440160:intron | 30.0% | |
| ! | AATAAGTTTTACCCATCCAA+TGG | + | tig0028975:9651-9670 | Msa1440160:intron | 30.0% |
| !! | CAATTAATTTGCCATTGGAT+GGG | - | tig0028975:9665-9684 | None:intergenic | 30.0% |
| !! | TCAATTAATTTGCCATTGGA+TGG | - | tig0028975:9666-9685 | None:intergenic | 30.0% |
| TAATTCTTGGTGGAATCAAA+GGG | - | tig0028975:9819-9838 | None:intergenic | 30.0% | |
| TTAATTCTTGGTGGAATCAA+AGG | - | tig0028975:9820-9839 | None:intergenic | 30.0% | |
| GTAAAAGGAAAGAAAGTAGA+AGG | + | tig0028975:9983-10002 | Msa1440160:intron | 30.0% | |
| GTAGAAGGAATGATTGTTAA+AGG | + | tig0028975:9998-10017 | Msa1440160:intron | 30.0% | |
| TGGAAAGTGAGATGATTATT+TGG | + | tig0028975:10044-10063 | Msa1440160:intron | 30.0% | |
| GAGATGATTATTTGGTTGTT+TGG | + | tig0028975:10052-10071 | Msa1440160:intron | 30.0% | |
| TGATTATTTGGTTGTTTGGT+AGG | + | tig0028975:10056-10075 | Msa1440160:intron | 30.0% | |
| AGAAGGATTCTTGAAATTTG+TGG | + | tig0028975:10490-10509 | Msa1440160:intron | 30.0% | |
| GTGTTCATTAACACTATGTT+TGG | - | tig0028975:10557-10576 | None:intergenic | 30.0% | |
| AGAAGGTCCAAATTATAAGA+AGG | - | tig0028975:10808-10827 | None:intergenic | 30.0% | |
| !!! | ATAGCTTTGGCACATATTTT+GGG | + | tig0028975:10889-10908 | Msa1440160:CDS | 30.0% |
| GTTATACCCTGAATATAATG+TGG | + | tig0028975:10996-11015 | Msa1440160:CDS | 30.0% | |
| ACTTTGCCACATTATATTCA+GGG | - | tig0028975:11005-11024 | None:intergenic | 30.0% | |
| TACTTTGCCACATTATATTC+AGG | - | tig0028975:11006-11025 | None:intergenic | 30.0% | |
| TGTATATAACGTCTTCACAA+TGG | + | tig0028975:11245-11264 | Msa1440160:intron | 30.0% | |
| TACAAAGTGACATGTGATTA+TGG | + | tig0028975:11621-11640 | Msa1440160:three_prime_UTR | 30.0% | |
| GGCTTTGCTAAATCAATTAT+TGG | - | tig0028975:11882-11901 | None:intergenic | 30.0% | |
| ! | ACCAGTTATGCTAGTTCTTA+CGG | + | tig0028975:6480-6499 | Msa1440160:five_prime_UTR | 35.0% |
| TTATGAAAGCGATGCATTGT+TGG | - | tig0028975:6602-6621 | None:intergenic | 35.0% | |
| TTCCCAGTCCTATATATACA+TGG | + | tig0028975:6626-6645 | Msa1440160:five_prime_UTR | 35.0% | |
| ! | GACAAAGCATTTAGAAGCAA+TGG | + | tig0028975:7009-7028 | Msa1440160:CDS | 35.0% |
| AAGCATTTAGAAGCAATGGA+AGG | + | tig0028975:7013-7032 | Msa1440160:CDS | 35.0% | |
| TAAATTGTTCTTGAACCTCG+GGG | - | tig0028975:7165-7184 | None:intergenic | 35.0% | |
| AAATAAAAGTTCACCCCTAG+TGG | + | tig0028975:7611-7630 | Msa1440160:intron | 35.0% | |
| CCTCTTGAAGATCCAAAAAT+TGG | - | tig0028975:7714-7733 | None:intergenic | 35.0% | |
| !! | CCAATTTTTGGATCTTCAAG+AGG | + | tig0028975:7711-7730 | Msa1440160:intron | 35.0% |
| CCTAATGATCAACACTTGTT+TGG | - | tig0028975:8079-8098 | None:intergenic | 35.0% | |
| !! | CCAAACAAGTGTTGATCATT+AGG | + | tig0028975:8076-8095 | Msa1440160:intron | 35.0% |
| TTGTATCACTCACACAATAG+AGG | - | tig0028975:8211-8230 | None:intergenic | 35.0% | |
| ! | GCATGACGATGAATTCATTT+TGG | + | tig0028975:8456-8475 | Msa1440160:intron | 35.0% |
| !!! | ATGAATTCATTTTGGGACAC+TGG | + | tig0028975:8464-8483 | Msa1440160:intron | 35.0% |
| TTTCGTATATGGTTGGATGT+GGG | - | tig0028975:8523-8542 | None:intergenic | 35.0% | |
| ! | TTTTCGTATATGGTTGGATG+TGG | - | tig0028975:8524-8543 | None:intergenic | 35.0% |
| CGATTCACCTGTAAGTTATA+AGG | + | tig0028975:9179-9198 | Msa1440160:intron | 35.0% | |
| GGTATGATTTCATCTTTCGT+GGG | - | tig0028975:9288-9307 | None:intergenic | 35.0% | |
| ! | AAGACTAGCTCAAGATTGTA+GGG | - | tig0028975:9309-9328 | None:intergenic | 35.0% |
| ! | AAAGACTAGCTCAAGATTGT+AGG | - | tig0028975:9310-9329 | None:intergenic | 35.0% |
| TGTACCCTTTATGATGTGAA+AGG | + | tig0028975:9549-9568 | Msa1440160:intron | 35.0% | |
| ATGCTTGAGTTAATTCTTGG+TGG | - | tig0028975:9829-9848 | None:intergenic | 35.0% | |
| ACCAAGAATTAACTCAAGCA+TGG | + | tig0028975:9828-9847 | Msa1440160:CDS | 35.0% | |
| CAAACAAAGCCTAAGATTAG+AGG | - | tig0028975:9949-9968 | None:intergenic | 35.0% | |
| !! | CTCTAATCTTAGGCTTTGTT+TGG | + | tig0028975:9947-9966 | Msa1440160:intron | 35.0% |
| GGATGAGAAGAGAAAGTAAA+AGG | + | tig0028975:9968-9987 | Msa1440160:intron | 35.0% | |
| AAAAGTAAGTAGAAAGTGGG+TGG | + | tig0028975:10024-10043 | Msa1440160:intron | 35.0% | |
| TTGTTTGGTAGGAATGAAAG+TGG | + | tig0028975:10067-10086 | Msa1440160:intron | 35.0% | |
| !! | AAAGTGGATTAGAAAGTGAG+AGG | + | tig0028975:10083-10102 | Msa1440160:intron | 35.0% |
| ! | TCTAGCCTTTCTTCTCATAT+TGG | + | tig0028975:10394-10413 | Msa1440160:intron | 35.0% |
| CCTTTCTTCTCATATTGGAT+CGG | + | tig0028975:10399-10418 | Msa1440160:intron | 35.0% | |
| !!! | TGGAAAGATCACTTTTTGCT+GGG | - | tig0028975:10444-10463 | None:intergenic | 35.0% |
| !!! | ATGGAAAGATCACTTTTTGC+TGG | - | tig0028975:10445-10464 | None:intergenic | 35.0% |
| TCAAGAATCCTTCTTTCGTT+TGG | - | tig0028975:10484-10503 | None:intergenic | 35.0% | |
| TTTGAGGAAAGATAGCTTGA+AGG | - | tig0028975:10522-10541 | None:intergenic | 35.0% | |
| AGCTACTAGAATGAGGAATT+TGG | + | tig0028975:10781-10800 | Msa1440160:intron | 35.0% | |
| AGGTGATAAAGAGACATATG+AGG | + | tig0028975:10834-10853 | Msa1440160:intron | 35.0% | |
| ACATATGAGGACTTCTTCAT+GGG | + | tig0028975:10847-10866 | Msa1440160:CDS | 35.0% | |
| !!! | CATAGCTTTGGCACATATTT+TGG | + | tig0028975:10888-10907 | Msa1440160:CDS | 35.0% |
| !! | TTTGAGCAAAAGAAAGCATC+TGG | + | tig0028975:10913-10932 | Msa1440160:CDS | 35.0% |
| TCCAGCAGAACAAATTATCA+AGG | + | tig0028975:11525-11544 | Msa1440160:CDS | 35.0% | |
| !! | TCCTTGATAATTTGTTCTGC+TGG | - | tig0028975:11529-11548 | None:intergenic | 35.0% |
| ! | AGAGGTTTGGTTTAACTTCT+TGG | + | tig0028975:11571-11590 | Msa1440160:exon | 35.0% |
| !!! | CCAAATATCCCATTTTTAGC+TGG | - | tig0028975:11946-11965 | None:intergenic | 35.0% |
| CCAGCTAAAAATGGGATATT+TGG | + | tig0028975:11943-11962 | Msa1440160:three_prime_UTR | 35.0% | |
| GGGATATTTGGATGTGAAAA+AGG | + | tig0028975:11955-11974 | Msa1440160:three_prime_UTR | 35.0% | |
| TCCGTAAGAACTAGCATAAC+TGG | - | tig0028975:6484-6503 | None:intergenic | 40.0% | |
| AAGTTCTTCACACGAGAGTT+TGG | - | tig0028975:6579-6598 | None:intergenic | 40.0% | |
| ! | GACACAAACTGACTTTGACA+TGG | - | tig0028975:6718-6737 | None:intergenic | 40.0% |
| TCAAAGTCAGTTTGTGTCAC+CGG | + | tig0028975:6720-6739 | Msa1440160:CDS | 40.0% | |
| CTAACCAAGATCTTGGATAG+TGG | - | tig0028975:6811-6830 | None:intergenic | 40.0% | |
| ATAGTGGCTAACCAAGATCT+TGG | - | tig0028975:6818-6837 | None:intergenic | 40.0% | |
| CTCAACTTATGCATGCACTA+AGG | + | tig0028975:6931-6950 | Msa1440160:intron | 40.0% | |
| CTTGCATGTCCTAACATCAT+CGG | + | tig0028975:7127-7146 | Msa1440160:CDS | 40.0% | |
| TTGACTTCACCGATGATGTT+AGG | - | tig0028975:7139-7158 | None:intergenic | 40.0% | |
| !!! | GCAGAAGCAAATTTTGGAAC+CGG | + | tig0028975:7266-7285 | Msa1440160:intron | 40.0% |
| !!! | ATTTTGGAACCGGCAATTCA+AGG | + | tig0028975:7276-7295 | Msa1440160:CDS | 40.0% |
| TTTACCGTTCCTTGAATTGC+CGG | - | tig0028975:7288-7307 | None:intergenic | 40.0% | |
| TTGGCCAGCTGATAAGATTA+AGG | + | tig0028975:7389-7408 | Msa1440160:CDS | 40.0% | |
| TCTGCCTTAATCTTATCAGC+TGG | - | tig0028975:7396-7415 | None:intergenic | 40.0% | |
| AGCTGATAAGATTAAGGCAG+AGG | + | tig0028975:7395-7414 | Msa1440160:CDS | 40.0% | |
| AGATTAAGGCAGAGGATTGT+TGG | + | tig0028975:7403-7422 | Msa1440160:CDS | 40.0% | |
| TCTATTCCTCCTATCCACTA+GGG | - | tig0028975:7628-7647 | None:intergenic | 40.0% | |
| AATCCAAAATAGAGGACACG+TGG | - | tig0028975:8370-8389 | None:intergenic | 40.0% | |
| TTCGTATATGGTTGGATGTG+GGG | - | tig0028975:8522-8541 | None:intergenic | 40.0% | |
| CTTGTAACTTACCACGATCA+AGG | - | tig0028975:9263-9282 | None:intergenic | 40.0% | |
| GGGTATGATTTCATCTTTCG+TGG | - | tig0028975:9289-9308 | None:intergenic | 40.0% | |
| TTGCAATGGGGTAGTATAAC+TGG | - | tig0028975:9711-9730 | None:intergenic | 40.0% | |
| TCTGCTAGTGTCTTTGCAAT+GGG | - | tig0028975:9724-9743 | None:intergenic | 40.0% | |
| TTCTGCTAGTGTCTTTGCAA+TGG | - | tig0028975:9725-9744 | None:intergenic | 40.0% | |
| AAGACACTAGCAGAAAAAGC+TGG | + | tig0028975:9730-9749 | Msa1440160:CDS | 40.0% | |
| ACTAGCAGAAAAAGCTGGTT+GGG | + | tig0028975:9735-9754 | Msa1440160:CDS | 40.0% | |
| !!! | TAAGGAGACTGGTTTTGATG+TGG | + | tig0028975:9765-9784 | Msa1440160:CDS | 40.0% |
| ATTAACCCTGGTACAGCTTT+GGG | + | tig0028975:9793-9812 | Msa1440160:CDS | 40.0% | |
| GCCATGCTTGAGTTAATTCT+TGG | - | tig0028975:9832-9851 | None:intergenic | 40.0% | |
| GTATACGAGCCTCTAATCTT+AGG | + | tig0028975:9937-9956 | Msa1440160:intron | 40.0% | |
| CCGATCCAATATGAGAAGAA+AGG | - | tig0028975:10402-10421 | None:intergenic | 40.0% | |
| TCTTCTCATATTGGATCGGA+AGG | + | tig0028975:10403-10422 | Msa1440160:intron | 40.0% | |
| CTTCTCATATTGGATCGGAA+GGG | + | tig0028975:10404-10423 | Msa1440160:intron | 40.0% | |
| AAGTGATCTTTCCATCCTCT+TGG | + | tig0028975:10450-10469 | Msa1440160:intron | 40.0% | |
| TTGAGCAACCAAACGAAAGA+AGG | + | tig0028975:10473-10492 | Msa1440160:intron | 40.0% | |
| !! | TTGGAACTGCTGATTCTTTG+AGG | - | tig0028975:10538-10557 | None:intergenic | 40.0% |
| AATGTCAAGCAGCTAATGCA+GGG | - | tig0028975:10667-10686 | None:intergenic | 40.0% | |
| AAATGTCAAGCAGCTAATGC+AGG | - | tig0028975:10668-10687 | None:intergenic | 40.0% | |
| GCATTAGCTGCTTGACATTT+AGG | + | tig0028975:10668-10687 | Msa1440160:intron | 40.0% | |
| GACATATGAGGACTTCTTCA+TGG | + | tig0028975:10846-10865 | Msa1440160:CDS | 40.0% | |
| !! | AGCAAAAGAAAGCATCTGGA+AGG | + | tig0028975:10917-10936 | Msa1440160:CDS | 40.0% |
| ATAACGTCTTCACAATGGAG+TGG | + | tig0028975:11250-11269 | Msa1440160:intron | 40.0% | |
| TTCTTTGCTCTCAACAATCC+AGG | - | tig0028975:11466-11485 | None:intergenic | 40.0% | |
| GTTGAGTGTTTGAAGAGTAG+AGG | + | tig0028975:11553-11572 | Msa1440160:CDS | 40.0% | |
| GTGTTTGAAGAGTAGAGGTT+TGG | + | tig0028975:11558-11577 | Msa1440160:CDS | 40.0% | |
| TTGGATGCTGAAGAAACCTA+TGG | + | tig0028975:11590-11609 | Msa1440160:three_prime_UTR | 40.0% | |
| TGGATGCTGAAGAAACCTAT+GGG | + | tig0028975:11591-11610 | Msa1440160:three_prime_UTR | 40.0% | |
| TTGGAATCTTCTTGTACTGC+TGG | - | tig0028975:11863-11882 | None:intergenic | 40.0% | |
| ! | ATCTTGGATAGTGGCATGGA+CGG | - | tig0028975:6802-6821 | None:intergenic | 45.0% |
| ! | CAAGATCTTGGATAGTGGCA+TGG | - | tig0028975:6806-6825 | None:intergenic | 45.0% |
| CATGCCACTATCCAAGATCT+TGG | + | tig0028975:6804-6823 | Msa1440160:CDS | 45.0% | |
| CGATGATGTTAGGACATGCA+AGG | - | tig0028975:7129-7148 | None:intergenic | 45.0% | |
| AGGAACGGTAAACGTGTTGA+AGG | + | tig0028975:7296-7315 | Msa1440160:CDS | 45.0% | |
| AACGGTAAACGTGTTGAAGG+TGG | + | tig0028975:7299-7318 | Msa1440160:CDS | 45.0% | |
| AAACGTGTTGAAGGTGGCTA+AGG | + | tig0028975:7305-7324 | Msa1440160:CDS | 45.0% | |
| ! | ACTAGGACTCGGTATAATGG+CGG | - | tig0028975:7370-7389 | None:intergenic | 45.0% |
| ! | CCAACTAGGACTCGGTATAA+TGG | - | tig0028975:7373-7392 | None:intergenic | 45.0% |
| CCATTATACCGAGTCCTAGT+TGG | + | tig0028975:7370-7389 | Msa1440160:CDS | 45.0% | |
| ATCTTATCAGCTGGCCAACT+AGG | - | tig0028975:7387-7406 | None:intergenic | 45.0% | |
| TAAGGCAGAGGATTGTTGGA+CGG | + | tig0028975:7407-7426 | Msa1440160:CDS | 45.0% | |
| GACGGACCTTGAATATTGCA+AGG | + | tig0028975:7425-7444 | Msa1440160:CDS | 45.0% | |
| ! | AAAGTTCACCCCTAGTGGAT+AGG | + | tig0028975:7616-7635 | Msa1440160:intron | 45.0% |
| CTATTCCTCCTATCCACTAG+GGG | - | tig0028975:7627-7646 | None:intergenic | 45.0% | |
| CTCTATTCCTCCTATCCACT+AGG | - | tig0028975:7629-7648 | None:intergenic | 45.0% | |
| ! | ACACCACGTGTCCTCTATTT+TGG | + | tig0028975:8364-8383 | Msa1440160:intron | 45.0% |
| AGAGCACATCGAGCAACTAA+AGG | - | tig0028975:8429-8448 | None:intergenic | 45.0% | |
| CTGCTAGTGTCTTTGCAATG+GGG | - | tig0028975:9723-9742 | None:intergenic | 45.0% | |
| CACTAGCAGAAAAAGCTGGT+TGG | + | tig0028975:9734-9753 | Msa1440160:CDS | 45.0% | |
| !! | AGCTGGTTGGGAATTTGCTA+AGG | + | tig0028975:9747-9766 | Msa1440160:CDS | 45.0% |
| !! | TGGGAATTTGCTAAGGAGAC+TGG | + | tig0028975:9754-9773 | Msa1440160:CDS | 45.0% |
| ! | GATGTGGTGATGATTAACCC+TGG | + | tig0028975:9781-9800 | Msa1440160:CDS | 45.0% |
| GATTAACCCTGGTACAGCTT+TGG | + | tig0028975:9792-9811 | Msa1440160:CDS | 45.0% | |
| ! | GTACTTGCTGGTGTTCTCAA+AGG | + | tig0028975:9853-9872 | Msa1440160:CDS | 45.0% |
| TTGGATCGGAAGGGAATCTT+TGG | + | tig0028975:10413-10432 | Msa1440160:intron | 45.0% | |
| ! | AGCAGCTAATGCAGGGTATT+AGG | - | tig0028975:10660-10679 | None:intergenic | 45.0% |
| TGAGGACTTCTTCATGGGAA+TGG | + | tig0028975:10852-10871 | Msa1440160:CDS | 45.0% | |
| !! | ATCTGGAAGGCATTTGTGTG+TGG | + | tig0028975:10930-10949 | Msa1440160:CDS | 45.0% |
| CAACCACTACACAATGCAGT+GGG | - | tig0028975:11336-11355 | None:intergenic | 45.0% | |
| ACAACCACTACACAATGCAG+TGG | - | tig0028975:11337-11356 | None:intergenic | 45.0% | |
| GGATGCTGAAGAAACCTATG+GGG | + | tig0028975:11592-11611 | Msa1440160:three_prime_UTR | 45.0% | |
| GATGCTGAAGAAACCTATGG+GGG | + | tig0028975:11593-11612 | Msa1440160:three_prime_UTR | 45.0% | |
| ACTTTGTATTCAGCCCCCAT+AGG | - | tig0028975:11609-11628 | None:intergenic | 45.0% | |
| !! | AATTTAAATAAAAATGAATT+AGG | - | tig0028975:8051-8070 | None:intergenic | 5.0% |
| !! | TAATTGATTAAAATTTATAT+AGG | + | tig0028975:8586-8605 | Msa1440160:intron | 5.0% |
| !!! | TTCTATATATTTTTATATAA+AGG | - | tig0028975:10145-10164 | None:intergenic | 5.0% |
| AACGCCAGCACAACCTTTCA+CGG | - | tig0028975:7101-7120 | None:intergenic | 50.0% | |
| GGAACCGGCAATTCAAGGAA+CGG | + | tig0028975:7281-7300 | Msa1440160:CDS | 50.0% | |
| TTGAAGGTGGCTAAGGAAGC+AGG | + | tig0028975:7312-7331 | Msa1440160:CDS | 50.0% | |
| GTATATGGTTGGATGTGGGG+AGG | - | tig0028975:8519-8538 | None:intergenic | 50.0% | |
| GTCAAAGGGTTGTACTCCCT+TGG | - | tig0028975:8893-8912 | None:intergenic | 50.0% | |
| TGAGGTCATCACATCGACAG+CGG | - | tig0028975:9220-9239 | None:intergenic | 50.0% | |
| AATGAGGCTTGCCTTGATCG+TGG | + | tig0028975:9249-9268 | Msa1440160:intron | 50.0% | |
| TCAAGCATGGCTGTACTTGC+TGG | + | tig0028975:9841-9860 | Msa1440160:CDS | 50.0% | |
| GATCGGAAGGGAATCTTTGG+TGG | + | tig0028975:10416-10435 | Msa1440160:intron | 50.0% | |
| TGGTTGCTCAACCAAGAGGA+TGG | - | tig0028975:10464-10483 | None:intergenic | 50.0% | |
| CGTTTGGTTGCTCAACCAAG+AGG | - | tig0028975:10468-10487 | None:intergenic | 50.0% | |
| AATCCAGGCTGAGTATCCGT+CGG | - | tig0028975:11451-11470 | None:intergenic | 50.0% | |
| TCAGCTGGCCAACTAGGACT+CGG | - | tig0028975:7381-7400 | None:intergenic | 55.0% | |
| ! | GTTCACCCCTAGTGGATAGG+AGG | + | tig0028975:7619-7638 | Msa1440160:intron | 55.0% |
| AAGGGCCCAAAGCTGTACCA+GGG | - | tig0028975:9801-9820 | None:intergenic | 55.0% | |
| AAAGGGCCCAAAGCTGTACC+AGG | - | tig0028975:9802-9821 | None:intergenic | 55.0% | |
| ACGCCCACTGCATTGTGTAG+TGG | + | tig0028975:11330-11349 | Msa1440160:intron | 55.0% | |
| ATACCGACGGATACTCAGCC+TGG | + | tig0028975:11445-11464 | Msa1440160:CDS | 55.0% | |
| ! | GTTTGTGTCACCGGTGCCAG+CGG | + | tig0028975:6729-6748 | Msa1440160:CDS | 60.0% |
| CAGCGGAGCCATCGGATCAT+GGG | + | tig0028975:6746-6765 | Msa1440160:CDS | 60.0% | |
| GCGAACCACCCATGATCCGA+TGG | - | tig0028975:6757-6776 | None:intergenic | 60.0% | |
| TCTATCGCAGCCGCCGTGAA+AGG | + | tig0028975:7085-7104 | Msa1440160:CDS | 60.0% | |
| GCCAGCACAACCTTTCACGG+CGG | - | tig0028975:7098-7117 | None:intergenic | 60.0% | |
| CGGTGAAGTCAAAGACCCCG+AGG | + | tig0028975:7147-7166 | Msa1440160:CDS | 60.0% | |
| GGTGGCTAAGGAAGCAGGAG+TGG | + | tig0028975:7317-7336 | Msa1440160:CDS | 60.0% | |
| GGAAGCAGGAGTGGAACGTG+TGG | + | tig0028975:7326-7345 | Msa1440160:CDS | 60.0% | |
| AGCAGGAGTGGAACGTGTGG+TGG | + | tig0028975:7329-7348 | Msa1440160:CDS | 60.0% | |
| CACAATGCAGTGGGCGTCAG+AGG | - | tig0028975:11327-11346 | None:intergenic | 60.0% | |
| CCATGATCCGATGGCTCCGC+TGG | - | tig0028975:6748-6767 | None:intergenic | 65.0% | |
| CCAGCGGAGCCATCGGATCA+TGG | + | tig0028975:6745-6764 | Msa1440160:CDS | 65.0% | |
| CGGAGCCATCGGATCATGGG+TGG | + | tig0028975:6749-6768 | Msa1440160:CDS | 65.0% | |
| GTTCGCCTCCTCCTCGAACG+CGG | + | tig0028975:6771-6790 | Msa1440160:CDS | 65.0% | |
| TGTAGCCGCGTTCGAGGAGG+AGG | - | tig0028975:6779-6798 | None:intergenic | 65.0% | |
| GCCGCCGTGAAAGGTTGTGC+TGG | + | tig0028975:7094-7113 | Msa1440160:CDS | 65.0% | |
| ! | ACCGGTGCCAGCGGAGCCAT+CGG | + | tig0028975:6738-6757 | Msa1440160:CDS | 70.0% |
| TCCGATGGCTCCGCTGGCAC+CGG | - | tig0028975:6742-6761 | None:intergenic | 70.0% | |
| CGGTGTAGCCGCGTTCGAGG+AGG | - | tig0028975:6782-6801 | None:intergenic | 70.0% | |
| GGACGGTGTAGCCGCGTTCG+AGG | - | tig0028975:6785-6804 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028975 | gene | 6418 | 11991 | 6418 | ID=Msa1440160;Name=Msa1440160 |
| tig0028975 | mRNA | 6418 | 11991 | 6418 | ID=Msa1440160-mRNA-1;Parent=Msa1440160;Name=Msa1440160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=299|1|1|1|1|1|6|406|319 |
| tig0028975 | exon | 6418 | 6825 | 6418 | ID=Msa1440160-mRNA-1:exon:12116;Parent=Msa1440160-mRNA-1 |
| tig0028975 | exon | 6996 | 7168 | 6996 | ID=Msa1440160-mRNA-1:exon:12117;Parent=Msa1440160-mRNA-1 |
| tig0028975 | exon | 7270 | 7455 | 7270 | ID=Msa1440160-mRNA-1:exon:12118;Parent=Msa1440160-mRNA-1 |
| tig0028975 | exon | 9712 | 9874 | 9712 | ID=Msa1440160-mRNA-1:exon:12119;Parent=Msa1440160-mRNA-1 |
| tig0028975 | exon | 10836 | 11022 | 10836 | ID=Msa1440160-mRNA-1:exon:12120;Parent=Msa1440160-mRNA-1 |
| tig0028975 | exon | 11444 | 11991 | 11444 | ID=Msa1440160-mRNA-1:exon:12121;Parent=Msa1440160-mRNA-1 |
| tig0028975 | five_prime_UTR | 6418 | 6716 | 6418 | ID=Msa1440160-mRNA-1:five_prime_utr;Parent=Msa1440160-mRNA-1 |
| tig0028975 | CDS | 6717 | 6825 | 6717 | ID=Msa1440160-mRNA-1:cds;Parent=Msa1440160-mRNA-1 |
| tig0028975 | CDS | 6996 | 7168 | 6996 | ID=Msa1440160-mRNA-1:cds;Parent=Msa1440160-mRNA-1 |
| tig0028975 | CDS | 7270 | 7455 | 7270 | ID=Msa1440160-mRNA-1:cds;Parent=Msa1440160-mRNA-1 |
| tig0028975 | CDS | 9712 | 9874 | 9712 | ID=Msa1440160-mRNA-1:cds;Parent=Msa1440160-mRNA-1 |
| tig0028975 | CDS | 10836 | 11022 | 10836 | ID=Msa1440160-mRNA-1:cds;Parent=Msa1440160-mRNA-1 |
| tig0028975 | CDS | 11444 | 11585 | 11444 | ID=Msa1440160-mRNA-1:cds;Parent=Msa1440160-mRNA-1 |
| tig0028975 | three_prime_UTR | 11586 | 11991 | 11586 | ID=Msa1440160-mRNA-1:three_prime_utr;Parent=Msa1440160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
