Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006850.t1 | AES89997.2 | 97.6 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 3.90E-127 | 464.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006850.t1 | Q9C5W6 | 85.0 | 247 | 37 | 0 | 3 | 249 | 6 | 252 | 8.1e-113 | 407.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006850.t1 | G7JHI0 | 97.6 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 2.8e-127 | 464.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006850 | MS.gene013047 | PPI |
| MS.gene006850 | MS.gene64150 | PPI |
| MS.gene006850 | MS.gene050079 | PPI |
| MS.gene006850 | MS.gene38593 | PPI |
| MS.gene006850 | MS.gene020411 | PPI |
| MS.gene006850 | MS.gene043907 | PPI |
| MS.gene006850 | MS.gene48435 | PPI |
| MS.gene006850 | MS.gene010179 | PPI |
| MS.gene006850 | MS.gene055488 | PPI |
| MS.gene006850 | MS.gene010180 | PPI |
| MS.gene006850 | MS.gene028807 | PPI |
| MS.gene006850 | MS.gene54847 | PPI |
| MS.gene006850 | MS.gene035837 | PPI |
| MS.gene006850 | MS.gene043514 | PPI |
| MS.gene006850 | MS.gene052176 | PPI |
| MS.gene006850 | MS.gene31370 | PPI |
| MS.gene006850 | MS.gene013133 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006850.t1 | MTR_4g083060 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 1.20e-179 | 494 |
| MS.gene006850.t1 | MTR_5g044160 | 90.984 | 244 | 22 | 0 | 1 | 244 | 1 | 244 | 3.64e-170 | 469 |
| MS.gene006850.t1 | MTR_2g091225 | 78.512 | 242 | 52 | 0 | 1 | 242 | 1 | 242 | 1.25e-145 | 407 |
| MS.gene006850.t1 | MTR_8g086270 | 79.339 | 242 | 50 | 0 | 1 | 242 | 1 | 242 | 2.75e-144 | 404 |
| MS.gene006850.t1 | MTR_2g076960 | 77.966 | 236 | 52 | 0 | 7 | 242 | 8 | 243 | 7.09e-139 | 390 |
| MS.gene006850.t1 | MTR_2g015980 | 77.586 | 232 | 51 | 1 | 11 | 242 | 9 | 239 | 6.44e-136 | 383 |
| MS.gene006850.t1 | MTR_2g091225 | 79.263 | 217 | 45 | 0 | 26 | 242 | 3 | 219 | 4.28e-132 | 372 |
| MS.gene006850.t1 | MTR_3g099380 | 73.222 | 239 | 62 | 2 | 7 | 243 | 8 | 246 | 2.18e-126 | 359 |
| MS.gene006850.t1 | MTR_5g064580 | 71.130 | 239 | 67 | 1 | 7 | 243 | 8 | 246 | 2.84e-123 | 351 |
| MS.gene006850.t1 | MTR_3g100620 | 66.383 | 235 | 76 | 1 | 7 | 238 | 11 | 245 | 4.03e-113 | 325 |
| MS.gene006850.t1 | MTR_3g099380 | 70.408 | 196 | 56 | 2 | 7 | 200 | 8 | 203 | 1.26e-96 | 281 |
| MS.gene006850.t1 | MTR_0137s0020 | 52.340 | 235 | 104 | 4 | 7 | 237 | 11 | 241 | 3.94e-75 | 228 |
| MS.gene006850.t1 | MTR_3g014060 | 51.915 | 235 | 105 | 4 | 7 | 237 | 11 | 241 | 2.35e-74 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006850.t1 | AT1G26480 | 84.677 | 248 | 38 | 0 | 2 | 249 | 5 | 252 | 3.45e-158 | 440 |
| MS.gene006850.t1 | AT1G34760 | 80.335 | 239 | 47 | 0 | 4 | 242 | 2 | 240 | 2.82e-144 | 404 |
| MS.gene006850.t1 | AT1G34760 | 80.335 | 239 | 47 | 0 | 4 | 242 | 2 | 240 | 3.41e-144 | 404 |
| MS.gene006850.t1 | AT2G42590 | 77.778 | 243 | 54 | 0 | 1 | 243 | 1 | 243 | 5.61e-142 | 399 |
| MS.gene006850.t1 | AT2G42590 | 77.778 | 243 | 54 | 0 | 1 | 243 | 1 | 243 | 8.07e-142 | 399 |
| MS.gene006850.t1 | AT2G42590 | 77.686 | 242 | 54 | 0 | 1 | 242 | 1 | 242 | 5.97e-141 | 396 |
| MS.gene006850.t1 | AT1G22300 | 77.049 | 244 | 55 | 1 | 4 | 247 | 2 | 244 | 1.96e-134 | 379 |
| MS.gene006850.t1 | AT1G22300 | 76.987 | 239 | 55 | 0 | 4 | 242 | 2 | 240 | 1.34e-133 | 377 |
| MS.gene006850.t1 | AT1G22300 | 76.987 | 239 | 55 | 0 | 4 | 242 | 2 | 240 | 1.34e-133 | 377 |
| MS.gene006850.t1 | AT5G38480 | 73.061 | 245 | 61 | 3 | 1 | 243 | 1 | 242 | 1.04e-126 | 359 |
| MS.gene006850.t1 | AT5G38480 | 72.874 | 247 | 62 | 3 | 1 | 245 | 1 | 244 | 2.72e-126 | 358 |
| MS.gene006850.t1 | AT5G38480 | 72.874 | 247 | 62 | 3 | 1 | 245 | 1 | 244 | 2.72e-126 | 358 |
| MS.gene006850.t1 | AT3G02520 | 71.967 | 239 | 65 | 2 | 7 | 243 | 5 | 243 | 6.56e-124 | 353 |
| MS.gene006850.t1 | AT3G02520 | 71.967 | 239 | 65 | 2 | 7 | 243 | 5 | 243 | 6.56e-124 | 353 |
| MS.gene006850.t1 | AT4G09000 | 71.730 | 237 | 65 | 1 | 7 | 241 | 10 | 246 | 3.59e-123 | 351 |
| MS.gene006850.t1 | AT1G78300 | 71.548 | 239 | 66 | 2 | 7 | 243 | 5 | 243 | 1.53e-122 | 349 |
| MS.gene006850.t1 | AT1G35160 | 72.650 | 234 | 62 | 1 | 7 | 238 | 11 | 244 | 1.63e-122 | 349 |
| MS.gene006850.t1 | AT1G35160 | 73.077 | 234 | 61 | 2 | 7 | 238 | 11 | 244 | 3.88e-122 | 349 |
| MS.gene006850.t1 | AT4G09000 | 72.650 | 234 | 62 | 2 | 7 | 238 | 10 | 243 | 5.84e-121 | 347 |
| MS.gene006850.t1 | AT5G16050 | 68.163 | 245 | 76 | 1 | 1 | 243 | 1 | 245 | 1.12e-118 | 340 |
| MS.gene006850.t1 | AT5G16050 | 68.163 | 245 | 76 | 1 | 1 | 243 | 1 | 245 | 1.12e-118 | 340 |
| MS.gene006850.t1 | AT5G65430 | 69.136 | 243 | 72 | 1 | 1 | 240 | 1 | 243 | 8.25e-118 | 337 |
| MS.gene006850.t1 | AT5G65430 | 68.852 | 244 | 73 | 1 | 1 | 241 | 1 | 244 | 9.07e-118 | 337 |
| MS.gene006850.t1 | AT5G65430 | 69.295 | 241 | 71 | 1 | 1 | 238 | 1 | 241 | 8.87e-117 | 335 |
| MS.gene006850.t1 | AT5G10450 | 67.932 | 237 | 73 | 1 | 7 | 240 | 7 | 243 | 6.13e-115 | 329 |
| MS.gene006850.t1 | AT5G10450 | 67.647 | 238 | 74 | 1 | 7 | 241 | 7 | 244 | 8.86e-115 | 329 |
| MS.gene006850.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 4.10e-114 | 328 |
| MS.gene006850.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 1.13e-113 | 327 |
| MS.gene006850.t1 | AT1G78220 | 51.709 | 234 | 112 | 1 | 4 | 236 | 2 | 235 | 3.01e-82 | 246 |
| MS.gene006850.t1 | AT1G22290 | 50.463 | 216 | 83 | 5 | 4 | 214 | 2 | 198 | 4.90e-60 | 189 |
| MS.gene006850.t1 | AT1G22290 | 50.235 | 213 | 82 | 5 | 4 | 211 | 2 | 195 | 1.56e-59 | 187 |
Find 51 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAAGTAACTTGCCTTTC+AGG | 0.239976 | 4.1:+24565221 | None:intergenic |
| CTGAGTTTCTCGCTCTTTCT+CGG | 0.244645 | 4.1:+24567385 | None:intergenic |
| TGAGAGACAACCTAACTCTT+TGG | 0.316077 | 4.1:-24564485 | MS.gene006850:CDS |
| CATGGCCAAGCTTGCTGAAC+AGG | 0.334846 | 4.1:-24567357 | MS.gene006850:CDS |
| ATAGTTCCTCCTCAACCTTT+TGG | 0.360282 | 4.1:+24565984 | None:intergenic |
| ATGCAAACCTTCGTATCTTT+CGG | 0.373656 | 4.1:+24567334 | None:intergenic |
| AACATACAGGGCCTGTCATT+TGG | 0.388777 | 4.1:-24564595 | MS.gene006850:intron |
| TTCGGCCTGTTCAGCAAGCT+TGG | 0.428676 | 4.1:+24567352 | None:intergenic |
| AATCAGAGGTCCAAAGAGTT+AGG | 0.440222 | 4.1:+24564475 | None:intergenic |
| TGCCTCCTTCCTATCTTGAT+CGG | 0.452703 | 4.1:+24565496 | None:intergenic |
| AGTTCAAAACCGATCAAGAT+AGG | 0.455794 | 4.1:-24565505 | MS.gene006850:CDS |
| GATCAAGAGTTATTGCCAAA+AGG | 0.475920 | 4.1:-24565999 | MS.gene006850:CDS |
| AGACGGATTGGATGTGTTGA+TGG | 0.480349 | 4.1:+24565293 | None:intergenic |
| GAGTTATTGCCAAAAGGTTG+AGG | 0.482988 | 4.1:-24565993 | MS.gene006850:CDS |
| CTGATTCCTTCTTCCACCAC+AGG | 0.490282 | 4.1:-24565920 | MS.gene006850:CDS |
| CGAGAAAGAGCGAGAAACTC+AGG | 0.500078 | 4.1:-24567384 | MS.gene006850:CDS |
| TGAACAGAAAGAAGAGGCTA+AGG | 0.502324 | 4.1:-24566044 | MS.gene006850:CDS |
| GCTTCCCCTGTGGTGGAAGA+AGG | 0.510142 | 4.1:+24565914 | None:intergenic |
| GGCAGCTGAGCAGTCACTGA+AGG | 0.516463 | 4.1:-24565477 | MS.gene006850:CDS |
| ACCTCTGATTTACCTGAGGA+TGG | 0.523658 | 4.1:-24564462 | MS.gene006850:CDS |
| TCAACACATCCAATCCGTCT+TGG | 0.541520 | 4.1:-24565290 | MS.gene006850:CDS |
| AGCTTGTTTAGCCAAATGAC+AGG | 0.543002 | 4.1:+24564584 | None:intergenic |
| AGTGCAAGTCCAAGACGGAT+TGG | 0.548630 | 4.1:+24565281 | None:intergenic |
| AACAGTAGCTTCCCCTGTGG+TGG | 0.549800 | 4.1:+24565907 | None:intergenic |
| GCGAGAAACTCAGGTTTACA+TGG | 0.557345 | 4.1:-24567375 | MS.gene006850:CDS |
| GCAGTCACTGAAGGCATATG+AGG | 0.557872 | 4.1:-24565468 | MS.gene006850:intron |
| GAGAGGAATCTTCTCTCAGT+GGG | 0.559508 | 4.1:-24566121 | MS.gene006850:CDS |
| AGTATCTTACCTCCATCCTC+AGG | 0.562669 | 4.1:+24564450 | None:intergenic |
| TTGGACCTCTGATTTACCTG+AGG | 0.563128 | 4.1:-24564466 | MS.gene006850:CDS |
| CAAAACCGATCAAGATAGGA+AGG | 0.568265 | 4.1:-24565501 | MS.gene006850:CDS |
| AGATAATGAACTCTCCTGAA+AGG | 0.578007 | 4.1:-24565235 | MS.gene006850:intron |
| CTTGTATGACTCTTCACTCA+AGG | 0.578019 | 4.1:+24564533 | None:intergenic |
| TTCAATTGAACAGAAAGAAG+AGG | 0.578869 | 4.1:-24566050 | MS.gene006850:CDS |
| TGATTCCTTCTTCCACCACA+GGG | 0.582149 | 4.1:-24565919 | MS.gene006850:CDS |
| TTGAGCTAACTGTGGAAGAG+AGG | 0.587221 | 4.1:-24566138 | MS.gene006850:CDS |
| CTTGAGTGAAGAGTCATACA+AGG | 0.594010 | 4.1:-24564532 | MS.gene006850:CDS |
| TGGAAGATCTGTGCTTGCAG+TGG | 0.604670 | 4.1:+24565313 | None:intergenic |
| TTATTGCCAAAAGGTTGAGG+AGG | 0.625542 | 4.1:-24565990 | MS.gene006850:CDS |
| GAACAGAAAGAAGAGGCTAA+GGG | 0.626996 | 4.1:-24566043 | MS.gene006850:CDS |
| GGCTAAACAAGCTTTCGATG+AGG | 0.651025 | 4.1:-24564574 | MS.gene006850:CDS |
| AGTTGAGTGCAAGTCCAAGA+CGG | 0.652366 | 4.1:+24565276 | None:intergenic |
| AGAGAGGAATCTTCTCTCAG+TGG | 0.653198 | 4.1:-24566122 | MS.gene006850:CDS |
| TGAAGACATAATGCGCCATG+AGG | 0.659378 | 4.1:+24566069 | None:intergenic |
| TTGGTGCAAGGAGAGCCTCA+TGG | 0.661918 | 4.1:-24566084 | MS.gene006850:CDS |
| TCCATCCTCAGGTAAATCAG+AGG | 0.670568 | 4.1:+24564461 | None:intergenic |
| ACTTGATGTTGAGCTAACTG+TGG | 0.673819 | 4.1:-24566146 | MS.gene006850:CDS |
| TCTGATTTACCTGAGGATGG+AGG | 0.684285 | 4.1:-24564459 | MS.gene006850:CDS |
| AACCGATCAAGATAGGAAGG+AGG | 0.690674 | 4.1:-24565498 | MS.gene006850:CDS |
| GAACAGGCCGAAAGATACGA+AGG | 0.692940 | 4.1:-24567341 | MS.gene006850:intron |
| GATTCCTTCTTCCACCACAG+GGG | 0.708565 | 4.1:-24565918 | MS.gene006850:CDS |
| GAAAACAGTAGCTTCCCCTG+TGG | 0.763670 | 4.1:+24565904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGTATAATTTGATTAA+AGG | + | chr4.1:24564543-24564562 | None:intergenic | 10.0% |
| !!! | ATATTTGTATTTCTATTATT+AGG | - | chr4.1:24566484-24566503 | MS.gene006850:intron | 10.0% |
| !! | ATAATTTGATTAAAGGAATA+TGG | + | chr4.1:24564536-24564555 | None:intergenic | 15.0% |
| !! | TAAAATCCATTTACAAAAAA+TGG | + | chr4.1:24566058-24566077 | None:intergenic | 15.0% |
| !!! | ATTCATTAATGTTTTTTTCT+AGG | + | chr4.1:24565373-24565392 | None:intergenic | 15.0% |
| !!! | TGATTCTAAAAGTTTATTTT+TGG | + | chr4.1:24566733-24566752 | None:intergenic | 15.0% |
| !! | ACTCACATTTATAGAATTTA+TGG | + | chr4.1:24564653-24564672 | None:intergenic | 20.0% |
| !! | AGTAATATACAAATTGCAAA+GGG | - | chr4.1:24565124-24565143 | MS.gene006850:intron | 20.0% |
| !! | ATAGAACATTATTACTCATT+AGG | - | chr4.1:24566872-24566891 | MS.gene006850:intron | 20.0% |
| !! | TAGTAATATACAAATTGCAA+AGG | - | chr4.1:24565123-24565142 | MS.gene006850:intron | 20.0% |
| !! | TATTAAACTAACCAAGAAAA+TGG | + | chr4.1:24565986-24566005 | None:intergenic | 20.0% |
| !! | TGAATTTCATATCTTTAGTT+AGG | - | chr4.1:24566818-24566837 | MS.gene006850:intron | 20.0% |
| !! | TTCTTGTGTTTAAATCTATA+TGG | - | chr4.1:24566439-24566458 | MS.gene006850:intron | 20.0% |
| !!! | AAATGTTTTAAGATCTCATA+CGG | + | chr4.1:24564760-24564779 | None:intergenic | 20.0% |
| !!! | ACTCTCTTATAGTTTTTTTT+AGG | + | chr4.1:24564989-24565008 | None:intergenic | 20.0% |
| !!! | ATCATCTGTTTAAAATATGT+AGG | - | chr4.1:24566925-24566944 | MS.gene006850:intron | 20.0% |
| !!! | ATTGAAAATTTGTTTTCGTA+TGG | - | chr4.1:24566016-24566035 | MS.gene006850:CDS | 20.0% |
| !!! | TTTTTTCTAGGAAAATATGA+CGG | + | chr4.1:24565361-24565380 | None:intergenic | 20.0% |
| ! | AAATTCATGAGAATCAATCT+AGG | + | chr4.1:24564815-24564834 | None:intergenic | 25.0% |
| ! | AACACTATTATCATTTGCAT+AGG | - | chr4.1:24567162-24567181 | MS.gene006850:intron | 25.0% |
| ! | AGATTTCAAGATTAATGAGT+TGG | - | chr4.1:24565018-24565037 | MS.gene006850:intron | 25.0% |
| ! | ATATTCTACAAAGAGTTCAA+AGG | - | chr4.1:24565178-24565197 | MS.gene006850:intron | 25.0% |
| ! | ATTACACACAAATAATCCAA+TGG | - | chr4.1:24566969-24566988 | MS.gene006850:intron | 25.0% |
| ! | ATTGGATTATTTGTGTGTAA+TGG | + | chr4.1:24566970-24566989 | None:intergenic | 25.0% |
| ! | CATTATTACTCATTAGGTAT+TGG | - | chr4.1:24566878-24566897 | MS.gene006850:intron | 25.0% |
| ! | TAAATAAGTTTGTATGATCC+AGG | - | chr4.1:24566273-24566292 | MS.gene006850:intron | 25.0% |
| ! | TAATGAGTTGTTATGTAGTA+AGG | - | chr4.1:24564910-24564929 | MS.gene006850:intron | 25.0% |
| ! | TATTCTACAAAGAGTTCAAA+GGG | - | chr4.1:24565179-24565198 | MS.gene006850:intron | 25.0% |
| ! | TTAAAGGAATATGGAAATGA+AGG | + | chr4.1:24564527-24564546 | None:intergenic | 25.0% |
| ! | TTAAGGAAATTACACAAGAA+TGG | + | chr4.1:24565304-24565323 | None:intergenic | 25.0% |
| ! | TTACACACAAATAATCCAAT+GGG | - | chr4.1:24566970-24566989 | MS.gene006850:intron | 25.0% |
| ! | TTATCTAATATCACTACTCA+AGG | + | chr4.1:24565520-24565539 | None:intergenic | 25.0% |
| ! | TTCAATCATGTAAAGTAAGA+GGG | + | chr4.1:24566795-24566814 | None:intergenic | 25.0% |
| ! | TTCTATCATTAACCATACTT+CGG | + | chr4.1:24565045-24565064 | None:intergenic | 25.0% |
| ! | TTGGATTATTTGTGTGTAAT+GGG | + | chr4.1:24566969-24566988 | None:intergenic | 25.0% |
| ! | TTTCTGACAAACAAATTTCT+TGG | - | chr4.1:24567079-24567098 | MS.gene006850:intron | 25.0% |
| !!! | AATGTTTTAAGATCTCATAC+GGG | + | chr4.1:24564759-24564778 | None:intergenic | 25.0% |
| !!! | ATCGGATACAATTTATTTTG+AGG | - | chr4.1:24564695-24564714 | MS.gene006850:intron | 25.0% |
| !!! | ATTGATTTGATTTCGAGTTT+TGG | - | chr4.1:24564597-24564616 | MS.gene006850:intron | 25.0% |
| !!! | ATTTTTTATTCGTGAAACTC+AGG | - | chr4.1:24565431-24565450 | MS.gene006850:intron | 25.0% |
| !!! | CTTGTTCCATTTTTTGTAAA+TGG | - | chr4.1:24566049-24566068 | MS.gene006850:CDS | 25.0% |
| AAAACCAATTCTGCATGTAT+CGG | - | chr4.1:24564677-24564696 | MS.gene006850:intron | 30.0% | |
| AATGTATTTGCCATCCAAAA+AGG | - | chr4.1:24565246-24565265 | MS.gene006850:CDS | 30.0% | |
| ATAAAAATGTCATTGGTGCA+AGG | - | chr4.1:24565733-24565752 | MS.gene006850:intron | 30.0% | |
| ATAACCAATCACAATTAGTC+AGG | - | chr4.1:24565536-24565555 | MS.gene006850:CDS | 30.0% | |
| ATATATGTATGATGCAGAGA+TGG | - | chr4.1:24565635-24565654 | MS.gene006850:intron | 30.0% | |
| ATGTGAATACTGAAACATAC+AGG | - | chr4.1:24567221-24567240 | MS.gene006850:intron | 30.0% | |
| CTTCAATCATGTAAAGTAAG+AGG | + | chr4.1:24566796-24566815 | None:intergenic | 30.0% | |
| GAAGTCTGTTAAGAGTTAAA+AGG | - | chr4.1:24565453-24565472 | MS.gene006850:intron | 30.0% | |
| GTGGGATATAAAAATGTCAT+TGG | - | chr4.1:24565726-24565745 | MS.gene006850:intron | 30.0% | |
| GTTATATATTGATAGAGCAG+TGG | - | chr4.1:24565396-24565415 | MS.gene006850:intron | 30.0% | |
| GTTTCAGTATTCACATTTGA+AGG | + | chr4.1:24567217-24567236 | None:intergenic | 30.0% | |
| TCAATCATGTAAAGTAAGAG+GGG | + | chr4.1:24566794-24566813 | None:intergenic | 30.0% | |
| TGTCAGAAAAGATCAAAAGA+GGG | + | chr4.1:24567068-24567087 | None:intergenic | 30.0% | |
| TGTGAATACTGAAACATACA+GGG | - | chr4.1:24567222-24567241 | MS.gene006850:intron | 30.0% | |
| TTATATGTGAATCAGTTCAG+TGG | + | chr4.1:24566418-24566437 | None:intergenic | 30.0% | |
| TTCAATTGAACAGAAAGAAG+AGG | - | chr4.1:24565779-24565798 | MS.gene006850:intron | 30.0% | |
| TTCAGTGGTGAAATAAACAA+GGG | + | chr4.1:24566403-24566422 | None:intergenic | 30.0% | |
| TTGTCAGAAAAGATCAAAAG+AGG | + | chr4.1:24567069-24567088 | None:intergenic | 30.0% | |
| TTTACAAATCGATCAGCTTA+AGG | + | chr4.1:24565321-24565340 | None:intergenic | 30.0% | |
| ! | ATAAACTCTAAAGAGCCATT+TGG | + | chr4.1:24566854-24566873 | None:intergenic | 30.0% |
| ! | ATATGTCTGAAGTTTCAGAA+AGG | + | chr4.1:24565615-24565634 | None:intergenic | 30.0% |
| ! | CAGATGATAGTTTTCTAACT+TGG | + | chr4.1:24566913-24566932 | None:intergenic | 30.0% |
| ! | TAAACTCTAAAGAGCCATTT+GGG | + | chr4.1:24566853-24566872 | None:intergenic | 30.0% |
| ! | TGATAGTTTTCTAACTTGGA+TGG | + | chr4.1:24566909-24566928 | None:intergenic | 30.0% |
| !!! | TACGCTCTTTATTAGCTTTT+GGG | - | chr4.1:24566631-24566650 | MS.gene006850:intron | 30.0% |
| !!! | TTACGCTCTTTATTAGCTTT+TGG | - | chr4.1:24566630-24566649 | MS.gene006850:intron | 30.0% |
| !!! | TTTTACTTCTGCCATTTTCT+TGG | - | chr4.1:24565972-24565991 | MS.gene006850:CDS | 30.0% |
| !!! | TTTTTTTCTTTCCCGATCAT+TGG | - | chr4.1:24566108-24566127 | MS.gene006850:CDS | 30.0% |
| AAGTTTGTATGATCCAGGAA+AGG | - | chr4.1:24566278-24566297 | MS.gene006850:intron | 35.0% | |
| ACATCCTGACTAATTGTGAT+TGG | + | chr4.1:24565543-24565562 | None:intergenic | 35.0% | |
| AGATAATGAACTCTCCTGAA+AGG | - | chr4.1:24566594-24566613 | MS.gene006850:intron | 35.0% | |
| AGTTCAAAACCGATCAAGAT+AGG | - | chr4.1:24566324-24566343 | MS.gene006850:intron | 35.0% | |
| ATAGCAAAACCGCTTAAGTT+CGG | - | chr4.1:24565478-24565497 | MS.gene006850:CDS | 35.0% | |
| ATCAGTTAAACCATGCAAGA+TGG | + | chr4.1:24564891-24564910 | None:intergenic | 35.0% | |
| ATGCAAACCTTCGTATCTTT+CGG | + | chr4.1:24564498-24564517 | None:intergenic | 35.0% | |
| CAGTATTCACATTTGAAGGA+AGG | + | chr4.1:24567213-24567232 | None:intergenic | 35.0% | |
| GATCAAGAGTTATTGCCAAA+AGG | - | chr4.1:24565830-24565849 | MS.gene006850:intron | 35.0% | |
| GTGATCTTTCATCCAATGAT+CGG | + | chr4.1:24566123-24566142 | None:intergenic | 35.0% | |
| GTTCAGTGGTGAAATAAACA+AGG | + | chr4.1:24566404-24566423 | None:intergenic | 35.0% | |
| TGATCTTTCATCCAATGATC+GGG | + | chr4.1:24566122-24566141 | None:intergenic | 35.0% | |
| TGCCATCCAAAAAGGATTAA+CGG | - | chr4.1:24565254-24565273 | MS.gene006850:CDS | 35.0% | |
| ! | AAGGAGAGTATATAAGACAC+AGG | - | chr4.1:24564929-24564948 | MS.gene006850:intron | 35.0% |
| ! | ACAAATTGCAAAGGGTCTTT+TGG | - | chr4.1:24565132-24565151 | MS.gene006850:intron | 35.0% |
| ! | AGTAAAGTAACTTGCCTTTC+AGG | + | chr4.1:24566611-24566630 | None:intergenic | 35.0% |
| ! | AGTTTTCTAACTTGGATGGA+TGG | + | chr4.1:24566905-24566924 | None:intergenic | 35.0% |
| ! | CACAAATAATCCAATGGGTT+TGG | - | chr4.1:24566975-24566994 | MS.gene006850:intron | 35.0% |
| ! | TCTAGAATACTCCTTAGTGA+GGG | - | chr4.1:24567040-24567059 | MS.gene006850:intron | 35.0% |
| ! | TTTCTAGGAAAATATGACGG+TGG | + | chr4.1:24565358-24565377 | None:intergenic | 35.0% |
| !! | TTCTAGAATACTCCTTAGTG+AGG | - | chr4.1:24567039-24567058 | MS.gene006850:intron | 35.0% |
| !!! | AGTTTTTTAACAGCGAAGAC+AGG | - | chr4.1:24566755-24566774 | MS.gene006850:intron | 35.0% |
| !!! | GTTTTTTAACAGCGAAGACA+GGG | - | chr4.1:24566756-24566775 | MS.gene006850:intron | 35.0% |
| AACCGCTTAAGTTCGGAATT+TGG | - | chr4.1:24565485-24565504 | MS.gene006850:CDS | 40.0% | |
| AATCAGAGGTCCAAAGAGTT+AGG | + | chr4.1:24567357-24567376 | None:intergenic | 40.0% | |
| ACTTGATGTTGAGCTAACTG+TGG | - | chr4.1:24565683-24565702 | MS.gene006850:intron | 40.0% | |
| CAAAACCGATCAAGATAGGA+AGG | - | chr4.1:24566328-24566347 | MS.gene006850:intron | 40.0% | |
| CACAAGAATGGAATGCAAAC+AGG | + | chr4.1:24565292-24565311 | None:intergenic | 40.0% | |
| CTTGAGTGAAGAGTCATACA+AGG | - | chr4.1:24567297-24567316 | MS.gene006850:intron | 40.0% | |
| CTTGTATGACTCTTCACTCA+AGG | + | chr4.1:24567299-24567318 | None:intergenic | 40.0% | |
| GAACAGAAAGAAGAGGCTAA+GGG | - | chr4.1:24565786-24565805 | MS.gene006850:intron | 40.0% | |
| GAGTTATTGCCAAAAGGTTG+AGG | - | chr4.1:24565836-24565855 | MS.gene006850:intron | 40.0% | |
| GCATGAATCTTACTTCCAGA+CGG | + | chr4.1:24566707-24566726 | None:intergenic | 40.0% | |
| GTATCCGATACATGCAGAAT+TGG | + | chr4.1:24564684-24564703 | None:intergenic | 40.0% | |
| GTCTGGAAGTAAGATTCATG+CGG | - | chr4.1:24566706-24566725 | MS.gene006850:intron | 40.0% | |
| TATCAACGACCTTTGATGCT+AGG | + | chr4.1:24565161-24565180 | None:intergenic | 40.0% | |
| TCGATAATAGTCACCTTTCC+TGG | + | chr4.1:24566294-24566313 | None:intergenic | 40.0% | |
| TGAACAGAAAGAAGAGGCTA+AGG | - | chr4.1:24565785-24565804 | MS.gene006850:intron | 40.0% | |
| TGAGAGACAACCTAACTCTT+TGG | - | chr4.1:24567344-24567363 | MS.gene006850:CDS | 40.0% | |
| TTAGGCACATTTGACCCAAA+TGG | - | chr4.1:24566836-24566855 | MS.gene006850:intron | 40.0% | |
| TTATTGCCAAAAGGTTGAGG+AGG | - | chr4.1:24565839-24565858 | MS.gene006850:intron | 40.0% | |
| TTTCTCTGTCTCTAGTGATC+CGG | + | chr4.1:24564964-24564983 | None:intergenic | 40.0% | |
| ! | AGCTTGTTTAGCCAAATGAC+AGG | + | chr4.1:24567248-24567267 | None:intergenic | 40.0% |
| ! | ATAGTTCCTCCTCAACCTTT+TGG | + | chr4.1:24565848-24565867 | None:intergenic | 40.0% |
| ! | TAATGAGTTGGACCGAAGTA+TGG | - | chr4.1:24565030-24565049 | MS.gene006850:intron | 40.0% |
| ! | TGCCGTTAATCCTTTTTGGA+TGG | + | chr4.1:24565259-24565278 | None:intergenic | 40.0% |
| !! | GATGTGCCGTTAATCCTTTT+TGG | + | chr4.1:24565263-24565282 | None:intergenic | 40.0% |
| !!! | TTTTGGCTTCCTAGCATCAA+AGG | - | chr4.1:24565149-24565168 | MS.gene006850:intron | 40.0% |
| AAAAGAGGGATCCCTCACTA+AGG | + | chr4.1:24567054-24567073 | None:intergenic | 45.0% | |
| AACATACAGGGCCTGTCATT+TGG | - | chr4.1:24567234-24567253 | MS.gene006850:intron | 45.0% | |
| AACCGATCAAGATAGGAAGG+AGG | - | chr4.1:24566331-24566350 | MS.gene006850:intron | 45.0% | |
| ACCTCTGATTTACCTGAGGA+TGG | - | chr4.1:24567367-24567386 | MS.gene006850:CDS | 45.0% | |
| AGACCTAGCATACCACAACT+AGG | + | chr4.1:24567001-24567020 | None:intergenic | 45.0% | |
| AGAGAGGAATCTTCTCTCAG+TGG | - | chr4.1:24565707-24565726 | MS.gene006850:intron | 45.0% | |
| AGTATCTTACCTCCATCCTC+AGG | + | chr4.1:24567382-24567401 | None:intergenic | 45.0% | |
| AGTTGAGTGCAAGTCCAAGA+CGG | + | chr4.1:24566556-24566575 | None:intergenic | 45.0% | |
| CGCCAAATTCCGAACTTAAG+CGG | + | chr4.1:24565490-24565509 | None:intergenic | 45.0% | |
| CGCTTAAGTTCGGAATTTGG+CGG | - | chr4.1:24565488-24565507 | MS.gene006850:CDS | 45.0% | |
| CTGAGTTTCTCGCTCTTTCT+CGG | + | chr4.1:24564447-24564466 | None:intergenic | 45.0% | |
| GAGAGGAATCTTCTCTCAGT+GGG | - | chr4.1:24565708-24565727 | MS.gene006850:intron | 45.0% | |
| GCGAGAAACTCAGGTTTACA+TGG | - | chr4.1:24564454-24564473 | MS.gene006850:CDS | 45.0% | |
| GCGATGTATACCATCTTGCA+TGG | - | chr4.1:24564878-24564897 | MS.gene006850:intron | 45.0% | |
| GGCTAAACAAGCTTTCGATG+AGG | - | chr4.1:24567255-24567274 | MS.gene006850:intron | 45.0% | |
| TCAACACATCCAATCCGTCT+TGG | - | chr4.1:24566539-24566558 | MS.gene006850:intron | 45.0% | |
| TCCATCCTCAGGTAAATCAG+AGG | + | chr4.1:24567371-24567390 | None:intergenic | 45.0% | |
| TCTGATTTACCTGAGGATGG+AGG | - | chr4.1:24567370-24567389 | MS.gene006850:CDS | 45.0% | |
| TGAAGACATAATGCGCCATG+AGG | + | chr4.1:24565763-24565782 | None:intergenic | 45.0% | |
| TGATTCCTTCTTCCACCACA+GGG | - | chr4.1:24565910-24565929 | MS.gene006850:CDS | 45.0% | |
| TGCCTCCTTCCTATCTTGAT+CGG | + | chr4.1:24566336-24566355 | None:intergenic | 45.0% | |
| TTGAGCTAACTGTGGAAGAG+AGG | - | chr4.1:24565691-24565710 | MS.gene006850:intron | 45.0% | |
| TTGGACCTCTGATTTACCTG+AGG | - | chr4.1:24567363-24567382 | MS.gene006850:CDS | 45.0% | |
| ! | AAGACACAGGAGAGTATAGC+CGG | - | chr4.1:24564942-24564961 | MS.gene006850:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.1:24565098-24565117 | None:intergenic | 45.0% |
| ! | CTTTTGGGCTCGATTGTACT+GGG | - | chr4.1:24566646-24566665 | MS.gene006850:intron | 45.0% |
| !! | AGACGGATTGGATGTGTTGA+TGG | + | chr4.1:24566539-24566558 | None:intergenic | 45.0% |
| !!! | GTTACTGATTTTGTGCCGTC+TGG | - | chr4.1:24566689-24566708 | MS.gene006850:intron | 45.0% |
| AGTGCAAGTCCAAGACGGAT+TGG | + | chr4.1:24566551-24566570 | None:intergenic | 50.0% | |
| CACAACTAGGCCAAACCCAT+TGG | + | chr4.1:24566988-24567007 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.1:24565096-24565115 | MS.gene006850:intron | 50.0% | |
| CCTTATCCCACTAAGTGGGT+CGG | + | chr4.1:24565094-24565113 | None:intergenic | 50.0% | |
| CGAGAAAGAGCGAGAAACTC+AGG | - | chr4.1:24564445-24564464 | MS.gene006850:CDS | 50.0% | |
| CTGATTCCTTCTTCCACCAC+AGG | - | chr4.1:24565909-24565928 | MS.gene006850:CDS | 50.0% | |
| GAAAACAGTAGCTTCCCCTG+TGG | + | chr4.1:24565928-24565947 | None:intergenic | 50.0% | |
| GAACAGGCCGAAAGATACGA+AGG | - | chr4.1:24564488-24564507 | MS.gene006850:CDS | 50.0% | |
| GATTCCTTCTTCCACCACAG+GGG | - | chr4.1:24565911-24565930 | MS.gene006850:CDS | 50.0% | |
| GGGTCATGCATGTGTCTCTT+AGG | - | chr4.1:24565199-24565218 | MS.gene006850:intron | 50.0% | |
| TGGAAGATCTGTGCTTGCAG+TGG | + | chr4.1:24566519-24566538 | None:intergenic | 50.0% | |
| TGGCCTAGTTGTGGTATGCT+AGG | - | chr4.1:24566995-24567014 | MS.gene006850:intron | 50.0% | |
| ! | CAATGGGTTTGGCCTAGTTG+TGG | - | chr4.1:24566986-24567005 | MS.gene006850:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.1:24565099-24565118 | None:intergenic | 50.0% |
| ! | GCAGTCACTGAAGGCATATG+AGG | - | chr4.1:24566361-24566380 | MS.gene006850:intron | 50.0% |
| ! | GCTTTTGGGCTCGATTGTAC+TGG | - | chr4.1:24566645-24566664 | MS.gene006850:intron | 50.0% |
| AACAGTAGCTTCCCCTGTGG+TGG | + | chr4.1:24565925-24565944 | None:intergenic | 55.0% | |
| ACGTAGCCGACCCACTTAGT+GGG | - | chr4.1:24565085-24565104 | MS.gene006850:intron | 55.0% | |
| CCGACCCACTTAGTGGGATA+AGG | - | chr4.1:24565091-24565110 | MS.gene006850:intron | 55.0% | |
| GGGCTCGATTGTACTGGGTT+TGG | - | chr4.1:24566651-24566670 | MS.gene006850:intron | 55.0% | |
| TTCGGCCTGTTCAGCAAGCT+TGG | + | chr4.1:24564480-24564499 | None:intergenic | 55.0% | |
| TTGGTGCAAGGAGAGCCTCA+TGG | - | chr4.1:24565745-24565764 | MS.gene006850:intron | 55.0% | |
| !! | CATGGCCAAGCTTGCTGAAC+AGG | - | chr4.1:24564472-24564491 | MS.gene006850:CDS | 55.0% |
| CACGTAGCCGACCCACTTAG+TGG | - | chr4.1:24565084-24565103 | MS.gene006850:intron | 60.0% | |
| CACTAAGTGGGTCGGCTACG+TGG | + | chr4.1:24565086-24565105 | None:intergenic | 60.0% | |
| GGCAGCTGAGCAGTCACTGA+AGG | - | chr4.1:24566352-24566371 | MS.gene006850:intron | 60.0% | |
| ! | GCTTCCCCTGTGGTGGAAGA+AGG | + | chr4.1:24565918-24565937 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 24564437 | 24567414 | 24564437 | ID=MS.gene006850 |
| chr4.1 | mRNA | 24564437 | 24567414 | 24564437 | ID=MS.gene006850.t1;Parent=MS.gene006850 |
| chr4.1 | exon | 24567342 | 24567414 | 24567342 | ID=MS.gene006850.t1.exon1;Parent=MS.gene006850.t1 |
| chr4.1 | CDS | 24567342 | 24567414 | 24567342 | ID=cds.MS.gene006850.t1;Parent=MS.gene006850.t1 |
| chr4.1 | exon | 24565893 | 24566199 | 24565893 | ID=MS.gene006850.t1.exon2;Parent=MS.gene006850.t1 |
| chr4.1 | CDS | 24565893 | 24566199 | 24565893 | ID=cds.MS.gene006850.t1;Parent=MS.gene006850.t1 |
| chr4.1 | exon | 24565469 | 24565556 | 24565469 | ID=MS.gene006850.t1.exon3;Parent=MS.gene006850.t1 |
| chr4.1 | CDS | 24565469 | 24565556 | 24565469 | ID=cds.MS.gene006850.t1;Parent=MS.gene006850.t1 |
| chr4.1 | exon | 24565236 | 24565345 | 24565236 | ID=MS.gene006850.t1.exon4;Parent=MS.gene006850.t1 |
| chr4.1 | CDS | 24565236 | 24565345 | 24565236 | ID=cds.MS.gene006850.t1;Parent=MS.gene006850.t1 |
| chr4.1 | exon | 24564437 | 24564608 | 24564437 | ID=MS.gene006850.t1.exon5;Parent=MS.gene006850.t1 |
| chr4.1 | CDS | 24564437 | 24564608 | 24564437 | ID=cds.MS.gene006850.t1;Parent=MS.gene006850.t1 |
| Gene Sequence |
| Protein sequence |
