Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64150.t1 | XP_003615160.1 | 99.6 | 260 | 1 | 0 | 5 | 264 | 1 | 260 | 6.90E-138 | 500 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64150.t1 | P42653 | 97.3 | 259 | 7 | 0 | 5 | 263 | 1 | 259 | 8.5e-137 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64150.t1 | B7FIY3 | 99.6 | 260 | 1 | 0 | 5 | 264 | 1 | 260 | 5.0e-138 | 500.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050079 | MS.gene64150 | 0.842694 | 2.21E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013133 | MS.gene64150 | PPI |
| MS.gene006850 | MS.gene64150 | PPI |
| MS.gene028807 | MS.gene64150 | PPI |
| MS.gene050079 | MS.gene64150 | PPI |
| MS.gene035837 | MS.gene64150 | PPI |
| MS.gene64150 | MS.gene53188 | PPI |
| MS.gene066779 | MS.gene64150 | PPI |
| MS.gene71392 | MS.gene64150 | PPI |
| MS.gene013047 | MS.gene64150 | PPI |
| MS.gene64150 | MS.gene052176 | PPI |
| MS.gene54847 | MS.gene64150 | PPI |
| MS.gene054662 | MS.gene64150 | PPI |
| MS.gene55401 | MS.gene64150 | PPI |
| MS.gene64150 | MS.gene86409 | PPI |
| MS.gene38593 | MS.gene64150 | PPI |
| MS.gene010180 | MS.gene64150 | PPI |
| MS.gene043514 | MS.gene64150 | PPI |
| MS.gene067412 | MS.gene64150 | PPI |
| MS.gene64150 | MS.gene31370 | PPI |
| MS.gene56475 | MS.gene64150 | PPI |
| MS.gene041125 | MS.gene64150 | PPI |
| MS.gene83541 | MS.gene64150 | PPI |
| MS.gene010179 | MS.gene64150 | PPI |
| MS.gene64150 | MS.gene047668 | PPI |
| MS.gene48435 | MS.gene64150 | PPI |
| MS.gene55400 | MS.gene64150 | PPI |
| MS.gene64150 | MS.gene043907 | PPI |
| MS.gene055488 | MS.gene64150 | PPI |
| MS.gene020411 | MS.gene64150 | PPI |
| MS.gene64150 | MS.gene010393 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64150.t1 | MTR_5g064580 | 99.615 | 260 | 1 | 0 | 5 | 264 | 1 | 260 | 0.0 | 532 |
| MS.gene64150.t1 | MTR_3g099380 | 90.385 | 260 | 25 | 0 | 5 | 264 | 1 | 260 | 2.38e-176 | 486 |
| MS.gene64150.t1 | MTR_3g100620 | 75.949 | 237 | 56 | 1 | 12 | 247 | 11 | 247 | 2.63e-135 | 382 |
| MS.gene64150.t1 | MTR_3g099380 | 89.655 | 203 | 21 | 0 | 5 | 207 | 1 | 203 | 3.98e-135 | 379 |
| MS.gene64150.t1 | MTR_2g091225 | 72.016 | 243 | 66 | 1 | 12 | 254 | 7 | 247 | 8.91e-129 | 365 |
| MS.gene64150.t1 | MTR_8g086270 | 71.605 | 243 | 67 | 1 | 12 | 254 | 7 | 247 | 7.13e-126 | 358 |
| MS.gene64150.t1 | MTR_2g015980 | 69.020 | 255 | 72 | 3 | 10 | 260 | 3 | 254 | 8.29e-126 | 358 |
| MS.gene64150.t1 | MTR_5g044160 | 70.325 | 246 | 71 | 1 | 7 | 252 | 2 | 245 | 2.82e-124 | 354 |
| MS.gene64150.t1 | MTR_4g083060 | 68.898 | 254 | 72 | 2 | 12 | 260 | 7 | 258 | 6.52e-124 | 354 |
| MS.gene64150.t1 | MTR_2g076960 | 66.154 | 260 | 85 | 2 | 5 | 263 | 1 | 258 | 1.01e-123 | 353 |
| MS.gene64150.t1 | MTR_2g091225 | 70.222 | 225 | 65 | 1 | 30 | 254 | 2 | 224 | 7.23e-116 | 332 |
| MS.gene64150.t1 | MTR_0137s0020 | 58.403 | 238 | 93 | 4 | 12 | 247 | 11 | 244 | 1.89e-91 | 270 |
| MS.gene64150.t1 | MTR_3g014060 | 57.983 | 238 | 94 | 4 | 12 | 247 | 11 | 244 | 9.31e-91 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64150.t1 | AT1G78300 | 90.157 | 254 | 24 | 1 | 12 | 264 | 5 | 258 | 9.29e-170 | 469 |
| MS.gene64150.t1 | AT1G35160 | 85.985 | 264 | 33 | 2 | 5 | 264 | 1 | 264 | 2.37e-167 | 463 |
| MS.gene64150.t1 | AT4G09000 | 88.933 | 253 | 26 | 1 | 5 | 255 | 1 | 253 | 1.95e-166 | 461 |
| MS.gene64150.t1 | AT1G35160 | 77.740 | 292 | 33 | 3 | 5 | 264 | 1 | 292 | 2.82e-161 | 449 |
| MS.gene64150.t1 | AT4G09000 | 89.344 | 244 | 24 | 1 | 5 | 246 | 1 | 244 | 3.71e-160 | 447 |
| MS.gene64150.t1 | AT5G38480 | 81.496 | 254 | 46 | 1 | 10 | 262 | 2 | 255 | 6.22e-154 | 429 |
| MS.gene64150.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 10 | 263 | 3 | 257 | 1.52e-152 | 426 |
| MS.gene64150.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 10 | 263 | 3 | 257 | 1.52e-152 | 426 |
| MS.gene64150.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 10 | 262 | 2 | 254 | 1.44e-151 | 423 |
| MS.gene64150.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 10 | 262 | 2 | 254 | 1.44e-151 | 423 |
| MS.gene64150.t1 | AT5G10450 | 79.508 | 244 | 49 | 1 | 8 | 250 | 3 | 246 | 4.32e-145 | 406 |
| MS.gene64150.t1 | AT5G10450 | 77.510 | 249 | 55 | 1 | 8 | 255 | 3 | 251 | 8.71e-145 | 407 |
| MS.gene64150.t1 | AT5G10450 | 79.668 | 241 | 48 | 1 | 8 | 247 | 3 | 243 | 1.03e-144 | 405 |
| MS.gene64150.t1 | AT5G10450 | 80.000 | 240 | 47 | 1 | 8 | 246 | 3 | 242 | 7.15e-144 | 404 |
| MS.gene64150.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 7 | 264 | 2 | 261 | 4.06e-143 | 402 |
| MS.gene64150.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 7 | 264 | 2 | 261 | 4.06e-143 | 402 |
| MS.gene64150.t1 | AT5G65430 | 78.138 | 247 | 52 | 2 | 5 | 250 | 1 | 246 | 3.13e-142 | 399 |
| MS.gene64150.t1 | AT5G65430 | 78.279 | 244 | 51 | 2 | 5 | 247 | 1 | 243 | 8.54e-142 | 398 |
| MS.gene64150.t1 | AT5G65430 | 78.601 | 243 | 50 | 2 | 5 | 246 | 1 | 242 | 3.36e-141 | 397 |
| MS.gene64150.t1 | AT1G26480 | 74.180 | 244 | 60 | 3 | 12 | 254 | 10 | 251 | 1.27e-128 | 365 |
| MS.gene64150.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 12 | 252 | 7 | 245 | 2.99e-122 | 349 |
| MS.gene64150.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 12 | 252 | 7 | 245 | 4.74e-122 | 349 |
| MS.gene64150.t1 | AT2G42590 | 70.833 | 240 | 68 | 1 | 12 | 251 | 7 | 244 | 1.22e-121 | 348 |
| MS.gene64150.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 12 | 249 | 5 | 240 | 4.73e-121 | 346 |
| MS.gene64150.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 12 | 249 | 5 | 240 | 7.06e-121 | 345 |
| MS.gene64150.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 12 | 263 | 5 | 249 | 8.02e-117 | 335 |
| MS.gene64150.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 12 | 263 | 5 | 249 | 8.11e-117 | 335 |
| MS.gene64150.t1 | AT1G22300 | 69.874 | 239 | 70 | 1 | 12 | 250 | 5 | 241 | 1.37e-115 | 332 |
| MS.gene64150.t1 | AT1G78220 | 48.927 | 233 | 116 | 2 | 12 | 243 | 5 | 235 | 1.39e-73 | 225 |
| MS.gene64150.t1 | AT1G22290 | 45.933 | 209 | 91 | 6 | 16 | 221 | 9 | 198 | 4.62e-48 | 159 |
| MS.gene64150.t1 | AT1G22290 | 45.631 | 206 | 90 | 6 | 16 | 218 | 9 | 195 | 6.75e-48 | 158 |
| MS.gene64150.t1 | AT2G10450 | 71.429 | 49 | 14 | 0 | 211 | 259 | 16 | 64 | 4.67e-18 | 77.0 |
Find 55 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCTGGTGATTCTA+AGG | 0.228252 | 5.1:+49603302 | MS.gene64150:CDS |
| AAGAATACCGTTACAGATAT+TGG | 0.234430 | 5.1:-49603250 | None:intergenic |
| TACTGCTCATCGGCGCCTTT+TGG | 0.244944 | 5.1:-49604962 | None:intergenic |
| TTGATTCCTTCTGCTGCTTC+TGG | 0.276388 | 5.1:+49603291 | MS.gene64150:CDS |
| CGATGAGGCTATTGCTGAAT+TGG | 0.295305 | 5.1:+49604721 | MS.gene64150:CDS |
| CGAAGAGATGGTCGATTTCA+TGG | 0.314624 | 5.1:+49603023 | MS.gene64150:CDS |
| TGCTTGTGGCCTTGCAAAAC+AGG | 0.353700 | 5.1:+49604256 | MS.gene64150:CDS |
| GATAATCACCTTTCATCTTA+AGG | 0.367061 | 5.1:-49603332 | None:intergenic |
| TTGTTTGGGTTTCAGGATGA+TGG | 0.406709 | 5.1:+49604914 | MS.gene64150:intron |
| TTCGTAACGTTCGGCTTGTT+CGG | 0.410967 | 5.1:-49603004 | None:intergenic |
| AGAGCAAGACCAAGCCTGAT+TGG | 0.420669 | 5.1:-49604188 | None:intergenic |
| TCCGTGATAACCTCACCCTT+TGG | 0.424479 | 5.1:+49604795 | MS.gene64150:CDS |
| GACCATCTCTTCGTAACGTT+CGG | 0.437327 | 5.1:-49603013 | None:intergenic |
| AGATGAAAGGTGATTATCAT+AGG | 0.447012 | 5.1:+49603337 | MS.gene64150:CDS |
| TACCACCAACTCACCCAATC+AGG | 0.450085 | 5.1:+49604174 | MS.gene64150:CDS |
| GCAAGGCCACAAGCACGATC+AGG | 0.466255 | 5.1:-49604248 | None:intergenic |
| ATTGCTGAATTGGATACATT+GGG | 0.469687 | 5.1:+49604731 | MS.gene64150:CDS |
| GCTTTCTTCCTTCTGTTCGA+TGG | 0.473046 | 5.1:-49603163 | None:intergenic |
| TACTGCTTATAAAGCTGCTC+AGG | 0.475422 | 5.1:+49603416 | MS.gene64150:CDS |
| ATCAAAGAAGCCGCACCAAA+AGG | 0.476807 | 5.1:+49604947 | MS.gene64150:CDS |
| GAGCAAGACCAAGCCTGATT+GGG | 0.484933 | 5.1:-49604187 | None:intergenic |
| TATTGCTGAATTGGATACAT+TGG | 0.488219 | 5.1:+49604730 | MS.gene64150:CDS |
| CTCTTCACGCGGTGTTGGTG+CGG | 0.499045 | 5.1:-49602959 | None:intergenic |
| GGTGAGTTCTTCGCTTTCGA+CGG | 0.507397 | 5.1:-49603061 | None:intergenic |
| CGGTGTTGGTGCGGTTGCCA+TGG | 0.510579 | 5.1:-49602950 | None:intergenic |
| TCGGAGCAAGACGTGCTTCG+TGG | 0.514368 | 5.1:+49603127 | MS.gene64150:CDS |
| AACTCTCCTGATCGTGCTTG+TGG | 0.523777 | 5.1:+49604242 | MS.gene64150:CDS |
| CCTTTGGACCTCTGACATGC+AGG | 0.533382 | 5.1:+49604811 | MS.gene64150:CDS |
| TTCTTCGCTTTCGACGGCGG+CGG | 0.538091 | 5.1:-49603055 | None:intergenic |
| GCGTGAAGAGTTCGTCTACA+TGG | 0.544670 | 5.1:+49602972 | MS.gene64150:CDS |
| CCAACTCACCCAATCAGGCT+TGG | 0.548958 | 5.1:+49604179 | MS.gene64150:CDS |
| CATCTCTTCCATCGAACAGA+AGG | 0.549390 | 5.1:+49603155 | MS.gene64150:CDS |
| CCTGCATGTCAGAGGTCCAA+AGG | 0.556945 | 5.1:-49604811 | None:intergenic |
| CTGCATGTCAGAGGTCCAAA+GGG | 0.558806 | 5.1:-49604810 | None:intergenic |
| ACGAACTCTTCACGCGGTGT+TGG | 0.561299 | 5.1:-49602964 | None:intergenic |
| AGCCTGATTGGGTGAGTTGG+TGG | 0.564969 | 5.1:-49604176 | None:intergenic |
| TGAATTGGATACATTGGGAG+AGG | 0.566946 | 5.1:+49604736 | MS.gene64150:CDS |
| TCCAAAGGGTGAGGTTATCA+CGG | 0.578031 | 5.1:-49604796 | None:intergenic |
| CCAAGCCTGATTGGGTGAGT+TGG | 0.579199 | 5.1:-49604179 | None:intergenic |
| CAACCAGATTCATCGATCCA+TGG | 0.582939 | 5.1:+49602933 | None:intergenic |
| GAGTTCTTCGCTTTCGACGG+CGG | 0.587801 | 5.1:-49603058 | None:intergenic |
| GAACTTTCCAATATCTGTAA+CGG | 0.597556 | 5.1:+49603243 | MS.gene64150:CDS |
| TGTCAGAGGTCCAAAGGGTG+AGG | 0.606809 | 5.1:-49604805 | None:intergenic |
| AGATCTGTAATCACGAATCA+CGG | 0.615306 | 5.1:-49603208 | None:intergenic |
| GAATCACCAGAAGCAGCAGA+AGG | 0.617542 | 5.1:-49603297 | None:intergenic |
| TATCTTGCTGAGTTTAAGAG+TGG | 0.621733 | 5.1:+49603360 | MS.gene64150:CDS |
| AGCCGAACGTTACGAAGAGA+TGG | 0.627906 | 5.1:+49603011 | MS.gene64150:CDS |
| ACGATATGATTACTGCTCAT+CGG | 0.628913 | 5.1:-49604972 | None:intergenic |
| ATATCATACCTGCATGTCAG+AGG | 0.643750 | 5.1:-49604819 | None:intergenic |
| ATTGGGAGAGGAATCATACA+AGG | 0.653137 | 5.1:+49604748 | MS.gene64150:CDS |
| GAGGAGGTTACGTTCTTCGA+CGG | 0.656962 | 5.1:-49603082 | None:intergenic |
| TAACATGTTCATCGTTACCA+CGG | 0.672519 | 5.1:-49603185 | None:intergenic |
| GAACAGAAGGAAGAAAGCCG+TGG | 0.676297 | 5.1:+49603168 | MS.gene64150:CDS |
| TATTCATTAGGCTTTCGATG+AGG | 0.689894 | 5.1:+49604706 | MS.gene64150:intron |
| ATGTAGACGAACTCTTCACG+CGG | 0.772962 | 5.1:-49602970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAATTAGGTTAAAATAA+TGG | + | chr5.1:49603767-49603786 | MS.gene64150:intron | 15.0% |
| !!! | ATTTTGGTTTATATTTTGTT+TGG | + | chr5.1:49604899-49604918 | MS.gene64150:intron | 15.0% |
| !!! | TAATATGATTTGTGTTAATT+AGG | + | chr5.1:49603655-49603674 | MS.gene64150:intron | 15.0% |
| !!! | TTTTGGTTTATATTTTGTTT+GGG | + | chr5.1:49604900-49604919 | MS.gene64150:intron | 15.0% |
| !! | AAAATGAAAGTCTTAAATGA+TGG | + | chr5.1:49603854-49603873 | MS.gene64150:intron | 20.0% |
| !! | AATTCACATCAACATTAAAA+AGG | - | chr5.1:49604557-49604576 | None:intergenic | 20.0% |
| !! | AATTTCATTAACATGTTTGT+GGG | + | chr5.1:49604511-49604530 | MS.gene64150:intron | 20.0% |
| !! | ACTACAAACTTTAATTGAAA+AGG | - | chr5.1:49604350-49604369 | None:intergenic | 20.0% |
| !! | TAATGAATATAGAAAAGAAC+AGG | - | chr5.1:49604695-49604714 | None:intergenic | 20.0% |
| !! | TAATTTCATTAACATGTTTG+TGG | + | chr5.1:49604510-49604529 | MS.gene64150:intron | 20.0% |
| !!! | CATATTCTGTTTATTGATTT+TGG | + | chr5.1:49604883-49604902 | MS.gene64150:intron | 20.0% |
| !!! | GATTTGATGATTTCTTAATT+AGG | + | chr5.1:49603755-49603774 | MS.gene64150:intron | 20.0% |
| !!! | TGTTCTTTTCTATATTCATT+AGG | + | chr5.1:49604694-49604713 | MS.gene64150:intron | 20.0% |
| !!! | TTTTCAATTAAAGTTTGTAG+TGG | + | chr5.1:49604349-49604368 | MS.gene64150:intron | 20.0% |
| ! | ACTACAGACTTTAATTGAAA+AGG | - | chr5.1:49604411-49604430 | None:intergenic | 25.0% |
| ! | GAGATCTAACGTTATATTTA+TGG | + | chr5.1:49603454-49603473 | MS.gene64150:intron | 25.0% |
| ! | GCAATATTTCAAACAAAGAA+TGG | - | chr5.1:49603565-49603584 | None:intergenic | 25.0% |
| ! | TATTCTAGATACCGAATAAT+GGG | + | chr5.1:49604283-49604302 | MS.gene64150:intron | 25.0% |
| ! | TTTAGGTAAGGGAAATTTAA+CGG | + | chr5.1:49603599-49603618 | MS.gene64150:intron | 25.0% |
| !! | AATGTTGATGTGAATTTGTT+AGG | + | chr5.1:49604561-49604580 | MS.gene64150:intron | 25.0% |
| !! | TGATTCTGTTCTGTTATTTA+TGG | + | chr5.1:49604649-49604668 | MS.gene64150:intron | 25.0% |
| !! | TTTCAAATGAGTTGAATGTA+GGG | + | chr5.1:49603812-49603831 | MS.gene64150:intron | 25.0% |
| !! | TTTTCAATTAAAGTCTGTAG+TGG | + | chr5.1:49604410-49604429 | MS.gene64150:intron | 25.0% |
| !!! | TGTAGGGTATTGTTTATTTT+TGG | + | chr5.1:49603828-49603847 | MS.gene64150:intron | 25.0% |
| !!! | TTATATTTTGTTTGGGTTTC+AGG | + | chr5.1:49604907-49604926 | MS.gene64150:intron | 25.0% |
| !!! | TTTAATTTGACTCTGTTTGT+AGG | + | chr5.1:49604133-49604152 | MS.gene64150:intron | 25.0% |
| !!! | TTTTCAAATGAGTTGAATGT+AGG | + | chr5.1:49603811-49603830 | MS.gene64150:intron | 25.0% |
| AAGAATACCGTTACAGATAT+TGG | - | chr5.1:49603253-49603272 | None:intergenic | 30.0% | |
| AGATGAAAGGTGATTATCAT+AGG | + | chr5.1:49603337-49603356 | MS.gene64150:CDS | 30.0% | |
| ATTGCTGAATTGGATACATT+GGG | + | chr5.1:49604731-49604750 | MS.gene64150:CDS | 30.0% | |
| GAACTTTCCAATATCTGTAA+CGG | + | chr5.1:49603243-49603262 | MS.gene64150:CDS | 30.0% | |
| GATAATCACCTTTCATCTTA+AGG | - | chr5.1:49603335-49603354 | None:intergenic | 30.0% | |
| GTATTCTAGATACCGAATAA+TGG | + | chr5.1:49604282-49604301 | MS.gene64150:intron | 30.0% | |
| TATTGCTGAATTGGATACAT+TGG | + | chr5.1:49604730-49604749 | MS.gene64150:CDS | 30.0% | |
| TATTTGTTCCTCAACAAGTT+TGG | + | chr5.1:49604613-49604632 | MS.gene64150:intron | 30.0% | |
| TTAGATCTCAGAGAAAAAGA+TGG | - | chr5.1:49603443-49603462 | None:intergenic | 30.0% | |
| ! | CTATAACTGACTTTAGGTAA+GGG | + | chr5.1:49603588-49603607 | MS.gene64150:intron | 30.0% |
| ! | GTTTTCTACCTTAAGATGAA+AGG | + | chr5.1:49603324-49603343 | MS.gene64150:CDS | 30.0% |
| ! | TCTATAACTGACTTTAGGTA+AGG | + | chr5.1:49603587-49603606 | MS.gene64150:intron | 30.0% |
| ! | TTTAACGGAGTTTTTGTGTT+TGG | + | chr5.1:49603614-49603633 | MS.gene64150:intron | 30.0% |
| AATGGGAGATGATGTTCATT+TGG | + | chr5.1:49604300-49604319 | MS.gene64150:intron | 35.0% | |
| AGATCTGTAATCACGAATCA+CGG | - | chr5.1:49603211-49603230 | None:intergenic | 35.0% | |
| ATATTGACACCTCTGATCAA+AGG | + | chr5.1:49603981-49604000 | MS.gene64150:intron | 35.0% | |
| GAACATCATCTCCCATTATT+CGG | - | chr5.1:49604297-49604316 | None:intergenic | 35.0% | |
| TAACATGTTCATCGTTACCA+CGG | - | chr5.1:49603188-49603207 | None:intergenic | 35.0% | |
| TATCTTGCTGAGTTTAAGAG+TGG | + | chr5.1:49603360-49603379 | MS.gene64150:CDS | 35.0% | |
| TATTCATTAGGCTTTCGATG+AGG | + | chr5.1:49604706-49604725 | MS.gene64150:intron | 35.0% | |
| TTGAACATAATCATGTGCGT+CGG | - | chr5.1:49604030-49604049 | None:intergenic | 35.0% | |
| ! | GAATACTAACCTGTTTTGCA+AGG | - | chr5.1:49604268-49604287 | None:intergenic | 35.0% |
| ! | GTGTTATTATTGCGTCAGTT+TGG | + | chr5.1:49604086-49604105 | MS.gene64150:intron | 35.0% |
| ! | TGCGATCTATAACTGACTTT+AGG | + | chr5.1:49603582-49603601 | MS.gene64150:intron | 35.0% |
| !! | GATGTGAATTTGTTAGGTTC+TGG | + | chr5.1:49604567-49604586 | MS.gene64150:intron | 35.0% |
| ATATCATACCTGCATGTCAG+AGG | - | chr5.1:49604822-49604841 | None:intergenic | 40.0% | |
| ATTGGGAGAGGAATCATACA+AGG | + | chr5.1:49604748-49604767 | MS.gene64150:CDS | 40.0% | |
| TACTGCTTATAAAGCTGCTC+AGG | + | chr5.1:49603416-49603435 | MS.gene64150:CDS | 40.0% | |
| TGAATTGGATACATTGGGAG+AGG | + | chr5.1:49604736-49604755 | MS.gene64150:CDS | 40.0% | |
| ! | TTGTTTGGGTTTCAGGATGA+TGG | + | chr5.1:49604914-49604933 | MS.gene64150:intron | 40.0% |
| !! | ATGCTACACCAAACTTGTTG+AGG | - | chr5.1:49604624-49604643 | None:intergenic | 40.0% |
| ATCAAAGAAGCCGCACCAAA+AGG | + | chr5.1:49604947-49604966 | MS.gene64150:CDS | 45.0% | |
| ATGTAGACGAACTCTTCACG+CGG | - | chr5.1:49602973-49602992 | None:intergenic | 45.0% | |
| CATCTCTTCCATCGAACAGA+AGG | + | chr5.1:49603155-49603174 | MS.gene64150:CDS | 45.0% | |
| CGATGAGGCTATTGCTGAAT+TGG | + | chr5.1:49604721-49604740 | MS.gene64150:CDS | 45.0% | |
| GACCATCTCTTCGTAACGTT+CGG | - | chr5.1:49603016-49603035 | None:intergenic | 45.0% | |
| GCTTTCTTCCTTCTGTTCGA+TGG | - | chr5.1:49603166-49603185 | None:intergenic | 45.0% | |
| GTCGCCTACAAAAACGTCAT+CGG | + | chr5.1:49603108-49603127 | MS.gene64150:CDS | 45.0% | |
| TCCAAAGGGTGAGGTTATCA+CGG | - | chr5.1:49604799-49604818 | None:intergenic | 45.0% | |
| ! | CGAAGAGATGGTCGATTTCA+TGG | + | chr5.1:49603023-49603042 | MS.gene64150:CDS | 45.0% |
| ! | GATGACGTTTTTGTAGGCGA+CGG | - | chr5.1:49603109-49603128 | None:intergenic | 45.0% |
| ! | TGCTCCGATGACGTTTTTGT+AGG | - | chr5.1:49603115-49603134 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTGGTGATTCTA+AGG | + | chr5.1:49603302-49603321 | MS.gene64150:CDS | 45.0% |
| ! | TTCGTAACGTTCGGCTTGTT+CGG | - | chr5.1:49603007-49603026 | None:intergenic | 45.0% |
| ! | TTGATTCCTTCTGCTGCTTC+TGG | + | chr5.1:49603291-49603310 | MS.gene64150:CDS | 45.0% |
| AACTCTCCTGATCGTGCTTG+TGG | + | chr5.1:49604242-49604261 | MS.gene64150:CDS | 50.0% | |
| AGAGCAAGACCAAGCCTGAT+TGG | - | chr5.1:49604191-49604210 | None:intergenic | 50.0% | |
| AGCCGAACGTTACGAAGAGA+TGG | + | chr5.1:49603011-49603030 | MS.gene64150:CDS | 50.0% | |
| CTGCATGTCAGAGGTCCAAA+GGG | - | chr5.1:49604813-49604832 | None:intergenic | 50.0% | |
| GAACAGAAGGAAGAAAGCCG+TGG | + | chr5.1:49603168-49603187 | MS.gene64150:CDS | 50.0% | |
| GAATCACCAGAAGCAGCAGA+AGG | - | chr5.1:49603300-49603319 | None:intergenic | 50.0% | |
| GAGCAAGACCAAGCCTGATT+GGG | - | chr5.1:49604190-49604209 | None:intergenic | 50.0% | |
| GAGGAGGTTACGTTCTTCGA+CGG | - | chr5.1:49603085-49603104 | None:intergenic | 50.0% | |
| GCGTGAAGAGTTCGTCTACA+TGG | + | chr5.1:49602972-49602991 | MS.gene64150:CDS | 50.0% | |
| GGTGAGTTCTTCGCTTTCGA+CGG | - | chr5.1:49603064-49603083 | None:intergenic | 50.0% | |
| TACCACCAACTCACCCAATC+AGG | + | chr5.1:49604174-49604193 | MS.gene64150:CDS | 50.0% | |
| TCCGTGATAACCTCACCCTT+TGG | + | chr5.1:49604795-49604814 | MS.gene64150:CDS | 50.0% | |
| ! | TGCTTGTGGCCTTGCAAAAC+AGG | + | chr5.1:49604256-49604275 | MS.gene64150:CDS | 50.0% |
| ! | TGTGGGAGCTTTAGTGCAGT+GGG | + | chr5.1:49604528-49604547 | MS.gene64150:intron | 50.0% |
| ! | TTGTGGGAGCTTTAGTGCAG+TGG | + | chr5.1:49604527-49604546 | MS.gene64150:intron | 50.0% |
| ACGAACTCTTCACGCGGTGT+TGG | - | chr5.1:49602967-49602986 | None:intergenic | 55.0% | |
| CCAACTCACCCAATCAGGCT+TGG | + | chr5.1:49604179-49604198 | MS.gene64150:CDS | 55.0% | |
| CCAAGCCTGATTGGGTGAGT+TGG | - | chr5.1:49604182-49604201 | None:intergenic | 55.0% | |
| CCAGACACGCCTTTGATCAG+AGG | - | chr5.1:49603993-49604012 | None:intergenic | 55.0% | |
| CCTGCATGTCAGAGGTCCAA+AGG | - | chr5.1:49604814-49604833 | None:intergenic | 55.0% | |
| CCTTTGGACCTCTGACATGC+AGG | + | chr5.1:49604811-49604830 | MS.gene64150:CDS | 55.0% | |
| GAGTTCTTCGCTTTCGACGG+CGG | - | chr5.1:49603061-49603080 | None:intergenic | 55.0% | |
| TGTCAGAGGTCCAAAGGGTG+AGG | - | chr5.1:49604808-49604827 | None:intergenic | 55.0% | |
| ! | AGCCTGATTGGGTGAGTTGG+TGG | - | chr5.1:49604179-49604198 | None:intergenic | 55.0% |
| ! | AGGCGTGTCTGGTTTCTGAC+AGG | + | chr5.1:49604001-49604020 | MS.gene64150:intron | 55.0% |
| ! | CCTCTGATCAAAGGCGTGTC+TGG | + | chr5.1:49603990-49604009 | MS.gene64150:intron | 55.0% |
| ! | CGTTTTTGTAGGCGACGGAG+AGG | - | chr5.1:49603104-49603123 | None:intergenic | 55.0% |
| ! | GCGTGTCTGGTTTCTGACAG+GGG | + | chr5.1:49604003-49604022 | MS.gene64150:intron | 55.0% |
| ! | GGCGTGTCTGGTTTCTGACA+GGG | + | chr5.1:49604002-49604021 | MS.gene64150:intron | 55.0% |
| ! | TACTGCTCATCGGCGCCTTT+TGG | - | chr5.1:49604965-49604984 | None:intergenic | 55.0% |
| ! | TTTTGTAGGCGACGGAGAGG+AGG | - | chr5.1:49603101-49603120 | None:intergenic | 55.0% |
| GCAAGGCCACAAGCACGATC+AGG | - | chr5.1:49604251-49604270 | None:intergenic | 60.0% | |
| TCGGAGCAAGACGTGCTTCG+TGG | + | chr5.1:49603127-49603146 | MS.gene64150:CDS | 60.0% | |
| TTCTTCGCTTTCGACGGCGG+CGG | - | chr5.1:49603058-49603077 | None:intergenic | 60.0% | |
| ! | CTCATCGGCGCCTTTTGGTG+CGG | - | chr5.1:49604960-49604979 | None:intergenic | 60.0% |
| !! | CTCTTCACGCGGTGTTGGTG+CGG | - | chr5.1:49602962-49602981 | None:intergenic | 60.0% |
| !! | CGGTGTTGGTGCGGTTGCCA+TGG | - | chr5.1:49602953-49602972 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 49602940 | 49604985 | 49602940 | ID=MS.gene64150 |
| chr5.1 | mRNA | 49602940 | 49604985 | 49602940 | ID=MS.gene64150.t1;Parent=MS.gene64150 |
| chr5.1 | exon | 49602940 | 49603437 | 49602940 | ID=MS.gene64150.t1.exon1;Parent=MS.gene64150.t1 |
| chr5.1 | CDS | 49602940 | 49603437 | 49602940 | ID=cds.MS.gene64150.t1;Parent=MS.gene64150.t1 |
| chr5.1 | exon | 49604155 | 49604277 | 49604155 | ID=MS.gene64150.t1.exon2;Parent=MS.gene64150.t1 |
| chr5.1 | CDS | 49604155 | 49604277 | 49604155 | ID=cds.MS.gene64150.t1;Parent=MS.gene64150.t1 |
| chr5.1 | exon | 49604716 | 49604832 | 49604716 | ID=MS.gene64150.t1.exon3;Parent=MS.gene64150.t1 |
| chr5.1 | CDS | 49604716 | 49604832 | 49604716 | ID=cds.MS.gene64150.t1;Parent=MS.gene64150.t1 |
| chr5.1 | exon | 49604929 | 49604985 | 49604929 | ID=MS.gene64150.t1.exon4;Parent=MS.gene64150.t1 |
| chr5.1 | CDS | 49604929 | 49604985 | 49604929 | ID=cds.MS.gene64150.t1;Parent=MS.gene64150.t1 |
| Gene Sequence |
| Protein sequence |
