Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043514.t1 | XP_013465242.1 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 9.50E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043514.t1 | P42654 | 95.8 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 2.2e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043514.t1 | A0A072VBW0 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 6.8e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043514 | MS.gene035837 | PPI |
| MS.gene043514 | MS.gene052176 | PPI |
| MS.gene043514 | MS.gene054662 | PPI |
| MS.gene043514 | MS.gene013133 | PPI |
| MS.gene043514 | MS.gene013047 | PPI |
| MS.gene56475 | MS.gene043514 | PPI |
| MS.gene043514 | MS.gene050079 | PPI |
| MS.gene043514 | MS.gene64150 | PPI |
| MS.gene043514 | MS.gene38593 | PPI |
| MS.gene48435 | MS.gene043514 | PPI |
| MS.gene043514 | MS.gene53188 | PPI |
| MS.gene043514 | MS.gene043907 | PPI |
| MS.gene55400 | MS.gene043514 | PPI |
| MS.gene020411 | MS.gene043514 | PPI |
| MS.gene043514 | MS.gene55401 | PPI |
| MS.gene013133 | MS.gene043514 | PPI |
| MS.gene043514 | MS.gene010179 | PPI |
| MS.gene006850 | MS.gene043514 | PPI |
| MS.gene043514 | MS.gene055488 | PPI |
| MS.gene043514 | MS.gene010180 | PPI |
| MS.gene066779 | MS.gene043514 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043514.t1 | MTR_2g091225 | 99.617 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 0.0 | 536 |
| MS.gene043514.t1 | MTR_2g091225 | 99.156 | 237 | 2 | 0 | 25 | 261 | 2 | 238 | 1.69e-177 | 488 |
| MS.gene043514.t1 | MTR_8g086270 | 83.203 | 256 | 43 | 0 | 1 | 256 | 1 | 256 | 1.03e-165 | 459 |
| MS.gene043514.t1 | MTR_2g015980 | 80.709 | 254 | 48 | 1 | 8 | 261 | 6 | 258 | 1.27e-155 | 433 |
| MS.gene043514.t1 | MTR_2g076960 | 77.308 | 260 | 57 | 2 | 1 | 259 | 1 | 259 | 2.45e-152 | 425 |
| MS.gene043514.t1 | MTR_4g083060 | 77.016 | 248 | 57 | 0 | 1 | 248 | 1 | 248 | 1.29e-144 | 406 |
| MS.gene043514.t1 | MTR_5g044160 | 75.410 | 244 | 60 | 0 | 1 | 244 | 1 | 244 | 9.71e-142 | 398 |
| MS.gene043514.t1 | MTR_5g064580 | 72.840 | 243 | 64 | 1 | 7 | 247 | 8 | 250 | 1.16e-129 | 368 |
| MS.gene043514.t1 | MTR_3g099380 | 72.428 | 243 | 65 | 2 | 2 | 242 | 3 | 245 | 3.51e-128 | 364 |
| MS.gene043514.t1 | MTR_3g100620 | 65.289 | 242 | 81 | 1 | 6 | 244 | 10 | 251 | 2.00e-115 | 331 |
| MS.gene043514.t1 | MTR_3g099380 | 69.154 | 201 | 60 | 2 | 2 | 200 | 3 | 203 | 1.12e-98 | 287 |
| MS.gene043514.t1 | MTR_0137s0020 | 52.564 | 234 | 105 | 3 | 7 | 237 | 11 | 241 | 1.76e-76 | 232 |
| MS.gene043514.t1 | MTR_3g014060 | 52.137 | 234 | 106 | 3 | 7 | 237 | 11 | 241 | 9.82e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043514.t1 | AT2G42590 | 82.443 | 262 | 45 | 1 | 1 | 261 | 1 | 262 | 3.66e-162 | 450 |
| MS.gene043514.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.00e-160 | 446 |
| MS.gene043514.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.04e-160 | 445 |
| MS.gene043514.t1 | AT1G26480 | 78.689 | 244 | 52 | 0 | 2 | 245 | 5 | 248 | 8.10e-148 | 414 |
| MS.gene043514.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.05e-142 | 399 |
| MS.gene043514.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.16e-142 | 399 |
| MS.gene043514.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 2.90e-135 | 382 |
| MS.gene043514.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 4.50e-135 | 381 |
| MS.gene043514.t1 | AT1G22300 | 77.637 | 237 | 53 | 0 | 6 | 242 | 4 | 240 | 1.02e-133 | 377 |
| MS.gene043514.t1 | AT1G78300 | 69.804 | 255 | 73 | 3 | 1 | 253 | 1 | 253 | 2.66e-127 | 362 |
| MS.gene043514.t1 | AT1G35160 | 68.110 | 254 | 79 | 2 | 2 | 253 | 6 | 259 | 8.89e-126 | 358 |
| MS.gene043514.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene043514.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene043514.t1 | AT4G09000 | 69.231 | 247 | 74 | 2 | 3 | 247 | 6 | 252 | 1.44e-125 | 358 |
| MS.gene043514.t1 | AT5G38480 | 71.545 | 246 | 67 | 3 | 7 | 249 | 4 | 249 | 8.63e-125 | 355 |
| MS.gene043514.t1 | AT1G35160 | 71.130 | 239 | 67 | 2 | 2 | 238 | 6 | 244 | 1.98e-124 | 356 |
| MS.gene043514.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene043514.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene043514.t1 | AT4G09000 | 70.711 | 239 | 68 | 2 | 2 | 238 | 5 | 243 | 1.28e-123 | 355 |
| MS.gene043514.t1 | AT5G65430 | 68.421 | 247 | 75 | 1 | 1 | 244 | 1 | 247 | 2.67e-123 | 351 |
| MS.gene043514.t1 | AT5G65430 | 68.852 | 244 | 73 | 1 | 1 | 241 | 1 | 244 | 8.41e-123 | 350 |
| MS.gene043514.t1 | AT5G65430 | 69.295 | 241 | 71 | 1 | 1 | 238 | 1 | 241 | 7.64e-122 | 348 |
| MS.gene043514.t1 | AT5G10450 | 65.992 | 247 | 81 | 1 | 1 | 244 | 1 | 247 | 3.96e-120 | 343 |
| MS.gene043514.t1 | AT5G10450 | 66.393 | 244 | 79 | 1 | 1 | 241 | 1 | 244 | 1.00e-119 | 342 |
| MS.gene043514.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 6.59e-119 | 340 |
| MS.gene043514.t1 | AT5G10450 | 63.498 | 263 | 86 | 2 | 1 | 253 | 1 | 263 | 7.63e-119 | 341 |
| MS.gene043514.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene043514.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene043514.t1 | AT1G78220 | 50.826 | 242 | 115 | 2 | 6 | 246 | 4 | 242 | 4.91e-82 | 246 |
| MS.gene043514.t1 | AT1G22290 | 51.196 | 209 | 78 | 5 | 11 | 214 | 9 | 198 | 7.81e-58 | 184 |
| MS.gene043514.t1 | AT1G22290 | 50.971 | 206 | 77 | 5 | 11 | 211 | 9 | 195 | 8.05e-58 | 183 |
Find 62 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGCCATTTGCTTTC+TGG | 0.064697 | 2.2:-8157939 | None:intergenic |
| ATTCAAATCACAAACCTTTC+TGG | 0.151393 | 2.2:-8157265 | None:intergenic |
| TAATAATTACCTCCATCTTC+TGG | 0.221124 | 2.2:-8157499 | None:intergenic |
| TGTGAATGCGAAACGGATTA+AGG | 0.355677 | 2.2:+8155923 | MS.gene043514:CDS |
| GATCAATGTACTATCTTTGT+AGG | 0.365217 | 2.2:-8157431 | None:intergenic |
| ATCGACGATGGCTTCCTCTA+AGG | 0.395439 | 2.2:+8155280 | None:intergenic |
| AATAATTACCTCCATCTTCT+GGG | 0.401437 | 2.2:-8157498 | None:intergenic |
| CATTGATCATGCAACTTCTC+AGG | 0.402439 | 2.2:+8157446 | MS.gene043514:CDS |
| TGTCAGAAGTCCAGAGAGTC+AGG | 0.404705 | 2.2:-8157474 | None:intergenic |
| TCAGGGACAACCTGACTCTC+TGG | 0.410560 | 2.2:+8157464 | MS.gene043514:CDS |
| TCATCCCATTCGATTGGGTC+TGG | 0.415982 | 2.2:+8157201 | MS.gene043514:CDS |
| TACCTTGCGGAATTTAAGTC+TGG | 0.416992 | 2.2:+8156185 | MS.gene043514:CDS |
| CAACAGTCAGTTCCACATCT+AGG | 0.421840 | 2.2:-8155791 | None:intergenic |
| TTCAGCTTGTTCAGCGAGCT+TGG | 0.427417 | 2.2:-8155327 | None:intergenic |
| TCTGTCTTCCATTGAGCAAA+AGG | 0.429678 | 2.2:+8155881 | MS.gene043514:CDS |
| AGCCTGCCATCTTGCAAAGC+AGG | 0.444543 | 2.2:+8157363 | MS.gene043514:CDS |
| TGATGAACATCTTATACCTT+CGG | 0.454250 | 2.2:+8156007 | MS.gene043514:CDS |
| CCCCACTCATCCCATTCGAT+TGG | 0.457840 | 2.2:+8157195 | MS.gene043514:CDS |
| TTTGTAGGACTCCTCATTCA+AGG | 0.458681 | 2.2:-8157416 | None:intergenic |
| GTTGGTTATAAGAATGTGAT+TGG | 0.468424 | 2.2:+8155834 | MS.gene043514:CDS |
| CCCACTCATCCCATTCGATT+GGG | 0.479191 | 2.2:+8157196 | MS.gene043514:CDS |
| CAAAAGCCTGCTTTGCAAGA+TGG | 0.481933 | 2.2:-8157369 | None:intergenic |
| GCAAATGGCACTGCCAAGCT+TGG | 0.496595 | 2.2:+8157946 | MS.gene043514:CDS |
| GTCTGCTACCACTGCAGCAG+AGG | 0.500212 | 2.2:+8157162 | MS.gene043514:intron |
| AGCCTGCTTTGCAAGATGGC+AGG | 0.506046 | 2.2:-8157365 | None:intergenic |
| ATCGTCGCCTCCACCAAGCT+TGG | 0.506577 | 2.2:-8157959 | None:intergenic |
| GGCACTGCCAAGCTTGGTGG+AGG | 0.506966 | 2.2:+8157952 | MS.gene043514:CDS |
| AGATCTTGAATTCACCAGAA+AGG | 0.507071 | 2.2:+8157251 | MS.gene043514:CDS |
| CCCAATCGAATGGGATGAGT+GGG | 0.509191 | 2.2:-8157196 | None:intergenic |
| GAAGAGAACCAGAAAGCAAA+TGG | 0.511133 | 2.2:+8157931 | MS.gene043514:intron |
| TAAGTCTGGCAATGAGAAGA+AGG | 0.514312 | 2.2:+8156199 | MS.gene043514:CDS |
| AATGGCACTGCCAAGCTTGG+TGG | 0.517803 | 2.2:+8157949 | MS.gene043514:CDS |
| ACTTCTGACATCCCAGAAGA+TGG | 0.519225 | 2.2:+8157487 | MS.gene043514:CDS |
| GGCAATGAGAAGAAGGAGGC+TGG | 0.532302 | 2.2:+8156206 | MS.gene043514:CDS |
| TAATTCAGCCTCTGCTGCAG+TGG | 0.536762 | 2.2:-8157170 | None:intergenic |
| AGAGCTCGACACCTTGAATG+AGG | 0.538643 | 2.2:+8157405 | MS.gene043514:CDS |
| CTTATACCTTCGGCTACAGC+TGG | 0.546040 | 2.2:+8156017 | MS.gene043514:CDS |
| CAATCGAATGGGATGAGTGG+GGG | 0.551178 | 2.2:-8157194 | None:intergenic |
| AAAGCCAGACCCAATCGAAT+GGG | 0.552082 | 2.2:-8157205 | None:intergenic |
| GAGCAAAAGGAGGAGACTAA+AGG | 0.552658 | 2.2:+8155894 | MS.gene043514:CDS |
| CAAAGCCAGACCCAATCGAA+TGG | 0.557939 | 2.2:-8157206 | None:intergenic |
| GAAAGGAATTTGCTGTCTGT+TGG | 0.574692 | 2.2:+8155816 | MS.gene043514:CDS |
| GAAATGATGTGAATGCGAAA+CGG | 0.574811 | 2.2:+8155916 | MS.gene043514:CDS |
| TGGAACTGACTGTTGAAGAA+AGG | 0.579381 | 2.2:+8155799 | MS.gene043514:CDS |
| TGGTGGAGGCGACGATGCAG+AGG | 0.580215 | 2.2:+8157966 | MS.gene043514:CDS |
| ACCCAATCGAATGGGATGAG+TGG | 0.580587 | 2.2:-8157197 | None:intergenic |
| TTGGTGCTCGCAGAGCCTCA+TGG | 0.582624 | 2.2:+8155853 | MS.gene043514:CDS |
| AATCGAATGGGATGAGTGGG+GGG | 0.585658 | 2.2:-8157193 | None:intergenic |
| ATTGATCATGCAACTTCTCA+GGG | 0.603706 | 2.2:+8157447 | MS.gene043514:CDS |
| CCAATCGAATGGGATGAGTG+GGG | 0.618524 | 2.2:-8157195 | None:intergenic |
| TCAGTCAATGAAAGCATATG+AGG | 0.622769 | 2.2:+8156232 | MS.gene043514:CDS |
| GTCTTCCATTGAGCAAAAGG+AGG | 0.626094 | 2.2:+8155884 | MS.gene043514:CDS |
| TGCCAGACTTAAATTCCGCA+AGG | 0.629305 | 2.2:-8156187 | None:intergenic |
| AGATTATTATCGTTACCTTG+CGG | 0.641586 | 2.2:+8156172 | MS.gene043514:CDS |
| GATTCACCAGCTGTAGCCGA+AGG | 0.643432 | 2.2:-8156023 | None:intergenic |
| GAATGTTGCGAACCTAGATG+TGG | 0.666486 | 2.2:+8155779 | MS.gene043514:CDS |
| GATTAAGGAGTATAGAAACA+AGG | 0.677872 | 2.2:+8155938 | MS.gene043514:CDS |
| GAACAAGCTGAACGTTACGA+AGG | 0.678687 | 2.2:+8155338 | MS.gene043514:CDS |
| TCTGACATCCCAGAAGATGG+AGG | 0.682653 | 2.2:+8157490 | MS.gene043514:CDS |
| GTCTGGCAATGAGAAGAAGG+AGG | 0.687369 | 2.2:+8156202 | MS.gene043514:CDS |
| GGAAGACAGAATCCTCCATG+AGG | 0.726645 | 2.2:-8155868 | None:intergenic |
| GTGCTCGCAGAGCCTCATGG+AGG | 0.748786 | 2.2:+8155856 | MS.gene043514:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACCATATAAATTTTTTT+AGG | + | chr2.2:8156529-8156548 | MS.gene043514:intron | 10.0% |
| !! | AGTACATAAAAATGAAAATA+TGG | - | chr2.2:8156959-8156978 | None:intergenic | 15.0% |
| !!! | TATCAATTTTAATCAAAAAC+CGG | - | chr2.2:8157304-8157323 | None:intergenic | 15.0% |
| !! | ATACTAGAAGAAAATTAACA+TGG | - | chr2.2:8156998-8157017 | None:intergenic | 20.0% |
| !! | ATCAGATATATAACAATAGA+CGG | - | chr2.2:8156875-8156894 | None:intergenic | 20.0% |
| !! | GACACCTAAAAAAATTTATA+TGG | - | chr2.2:8156536-8156555 | None:intergenic | 20.0% |
| !!! | ATCAATTTTAATCAAAAACC+GGG | - | chr2.2:8157303-8157322 | None:intergenic | 20.0% |
| !!! | TAAAACAAAGTATTCTGAAT+AGG | - | chr2.2:8157099-8157118 | None:intergenic | 20.0% |
| !!! | TAGTTTCTTTTATCAAAAAC+AGG | + | chr2.2:8156743-8156762 | MS.gene043514:intron | 20.0% |
| ! | AAAAGAAACTATAACATGCA+AGG | - | chr2.2:8156734-8156753 | None:intergenic | 25.0% |
| ! | AAAGAAACTATAACATGCAA+GGG | - | chr2.2:8156733-8156752 | None:intergenic | 25.0% |
| ! | AGATGGAGGTAATTATTAAT+AGG | + | chr2.2:8157504-8157523 | MS.gene043514:intron | 25.0% |
| ! | ATAATGATTGGAATGACTAA+TGG | + | chr2.2:8157718-8157737 | MS.gene043514:intron | 25.0% |
| ! | ATGGTTTACTGTTTCAATTA+GGG | + | chr2.2:8155515-8155534 | MS.gene043514:intron | 25.0% |
| ! | GAAGTTTGCAATTAAATCAT+TGG | + | chr2.2:8156660-8156679 | MS.gene043514:intron | 25.0% |
| ! | TAATTGTAGAATCCAACAAT+GGG | + | chr2.2:8156492-8156511 | MS.gene043514:intron | 25.0% |
| ! | TATGGTTTACTGTTTCAATT+AGG | + | chr2.2:8155514-8155533 | MS.gene043514:intron | 25.0% |
| ! | TTAATGCTGAACATAAATTG+TGG | + | chr2.2:8157842-8157861 | MS.gene043514:intron | 25.0% |
| ! | TTTACACGTCAAATAATGAT+TGG | + | chr2.2:8157706-8157725 | MS.gene043514:intron | 25.0% |
| !! | ATCAAAGACATGAAATTTTC+AGG | - | chr2.2:8156434-8156453 | None:intergenic | 25.0% |
| !! | ATTGTGGTAGTTATTCTTTT+TGG | + | chr2.2:8157858-8157877 | MS.gene043514:intron | 25.0% |
| !! | GTAAAAGCATATAAAGATGA+AGG | - | chr2.2:8157691-8157710 | None:intergenic | 25.0% |
| !! | TTTATATGTTATTTGCACCT+GGG | + | chr2.2:8156284-8156303 | MS.gene043514:intron | 25.0% |
| !!! | AAAATTGATAGTGTGTTTGA+CGG | + | chr2.2:8157314-8157333 | MS.gene043514:intron | 25.0% |
| !!! | AAATTTTTTTAGGTGTCTTG+TGG | + | chr2.2:8156539-8156558 | MS.gene043514:intron | 25.0% |
| !!! | AAGTTCCAAATAACTTGTTT+TGG | - | chr2.2:8156585-8156604 | None:intergenic | 25.0% |
| !!! | CTGATGTGATTAAGTTTTTT+GGG | + | chr2.2:8156890-8156909 | MS.gene043514:intron | 25.0% |
| !!! | GAAATCAAGAAGTTTTAAGT+AGG | - | chr2.2:8157133-8157152 | None:intergenic | 25.0% |
| !!! | TCATGTTTTATTCTCTACTA+TGG | + | chr2.2:8156075-8156094 | MS.gene043514:intron | 25.0% |
| !!! | TCTGATGTGATTAAGTTTTT+TGG | + | chr2.2:8156889-8156908 | MS.gene043514:intron | 25.0% |
| !!! | TTGAATTTGATTTTGTAACC+CGG | + | chr2.2:8157282-8157301 | MS.gene043514:intron | 25.0% |
| AAGAAACTATAACATGCAAG+GGG | - | chr2.2:8156732-8156751 | None:intergenic | 30.0% | |
| AATAATTACCTCCATCTTCT+GGG | - | chr2.2:8157501-8157520 | None:intergenic | 30.0% | |
| AGATTATTATCGTTACCTTG+CGG | + | chr2.2:8156172-8156191 | MS.gene043514:CDS | 30.0% | |
| ATTCAAATCACAAACCTTTC+TGG | - | chr2.2:8157268-8157287 | None:intergenic | 30.0% | |
| CTAATTGTAGAATCCAACAA+TGG | + | chr2.2:8156491-8156510 | MS.gene043514:intron | 30.0% | |
| GATCAATGTACTATCTTTGT+AGG | - | chr2.2:8157434-8157453 | None:intergenic | 30.0% | |
| GCAATATATGCAGCATAAAA+TGG | - | chr2.2:8156810-8156829 | None:intergenic | 30.0% | |
| GTTGGTTATAAGAATGTGAT+TGG | + | chr2.2:8155834-8155853 | MS.gene043514:CDS | 30.0% | |
| TAATAATTACCTCCATCTTC+TGG | - | chr2.2:8157502-8157521 | None:intergenic | 30.0% | |
| TCAAAAACAGGATTGATTAC+TGG | + | chr2.2:8156755-8156774 | MS.gene043514:intron | 30.0% | |
| TGAAAATATGGATGAAAGCT+AGG | - | chr2.2:8156947-8156966 | None:intergenic | 30.0% | |
| TGATGAACATCTTATACCTT+CGG | + | chr2.2:8156007-8156026 | MS.gene043514:CDS | 30.0% | |
| TTTGTCAGTGTTAGTGTTTA+TGG | + | chr2.2:8155496-8155515 | MS.gene043514:intron | 30.0% | |
| ! | AAGATGTTTTACAGGAGTAA+GGG | + | chr2.2:8157557-8157576 | MS.gene043514:intron | 30.0% |
| ! | CTATTAGCAATTGTTCTAGA+AGG | + | chr2.2:8156359-8156378 | MS.gene043514:intron | 30.0% |
| ! | GATTAAGGAGTATAGAAACA+AGG | + | chr2.2:8155938-8155957 | MS.gene043514:CDS | 30.0% |
| ! | GCTCTATTAAGATGTTTTAC+AGG | + | chr2.2:8157549-8157568 | MS.gene043514:intron | 30.0% |
| ! | GTTTATATGTTATTTGCACC+TGG | + | chr2.2:8156283-8156302 | MS.gene043514:intron | 30.0% |
| ! | TAAGATGTTTTACAGGAGTA+AGG | + | chr2.2:8157556-8157575 | MS.gene043514:intron | 30.0% |
| !! | AAATTGATAGTGTGTTTGAC+GGG | + | chr2.2:8157315-8157334 | MS.gene043514:intron | 30.0% |
| !! | TTTTGGTTGTCCTTTTTCTA+TGG | + | chr2.2:8157875-8157894 | MS.gene043514:intron | 30.0% |
| !!! | TTTTTTTTTGCTGACAGAGA+TGG | + | chr2.2:8155743-8155762 | MS.gene043514:intron | 30.0% |
| ACAGGATTGATTACTGGAAT+TGG | + | chr2.2:8156761-8156780 | MS.gene043514:intron | 35.0% | |
| AGAAACTATAACATGCAAGG+GGG | - | chr2.2:8156731-8156750 | None:intergenic | 35.0% | |
| AGATCTTGAATTCACCAGAA+AGG | + | chr2.2:8157251-8157270 | MS.gene043514:CDS | 35.0% | |
| AGCAGGAAGTCAGAAAAATT+CGG | - | chr2.2:8157908-8157927 | None:intergenic | 35.0% | |
| AGCATTAAATCTCACTGTCT+AGG | - | chr2.2:8157830-8157849 | None:intergenic | 35.0% | |
| ATATGGATGAAAGCTAGGAA+AGG | - | chr2.2:8156942-8156961 | None:intergenic | 35.0% | |
| ATTGATCATGCAACTTCTCA+GGG | + | chr2.2:8157447-8157466 | MS.gene043514:CDS | 35.0% | |
| ATTGTGAAGAAACCCATTGT+TGG | - | chr2.2:8156507-8156526 | None:intergenic | 35.0% | |
| CGGTAAACATCCATAGAAAA+AGG | - | chr2.2:8157888-8157907 | None:intergenic | 35.0% | |
| GAAATGATGTGAATGCGAAA+CGG | + | chr2.2:8155916-8155935 | MS.gene043514:CDS | 35.0% | |
| GCACATGTTGGATAATTCAA+GGG | - | chr2.2:8157633-8157652 | None:intergenic | 35.0% | |
| GTAAACACAAAGTCGTCAAA+TGG | - | chr2.2:8156621-8156640 | None:intergenic | 35.0% | |
| GTCTAGGTGACTTCATATAT+AGG | - | chr2.2:8157814-8157833 | None:intergenic | 35.0% | |
| TGCACATGTTGGATAATTCA+AGG | - | chr2.2:8157634-8157653 | None:intergenic | 35.0% | |
| TGCAGCCAAAACAAGTTATT+TGG | + | chr2.2:8156577-8156596 | MS.gene043514:intron | 35.0% | |
| TTGTAAGAGCTGTTAGTCAT+AGG | + | chr2.2:8157068-8157087 | MS.gene043514:intron | 35.0% | |
| ! | TCAGTCAATGAAAGCATATG+AGG | + | chr2.2:8156232-8156251 | MS.gene043514:CDS | 35.0% |
| !! | AATTGATAGTGTGTTTGACG+GGG | + | chr2.2:8157316-8157335 | MS.gene043514:intron | 35.0% |
| !!! | GTTTTGCACAAGTTGATTGT+GGG | + | chr2.2:8156120-8156139 | MS.gene043514:intron | 35.0% |
| !!! | TGTTTTGCACAAGTTGATTG+TGG | + | chr2.2:8156119-8156138 | MS.gene043514:intron | 35.0% |
| AAAGGGAAAAACAATGCAGC+AGG | - | chr2.2:8156695-8156714 | None:intergenic | 40.0% | |
| ACCATCAATACATGGTACAG+AGG | - | chr2.2:8156848-8156867 | None:intergenic | 40.0% | |
| ACGGAAGAACCATCAATACA+TGG | - | chr2.2:8156856-8156875 | None:intergenic | 40.0% | |
| CATTGATCATGCAACTTCTC+AGG | + | chr2.2:8157446-8157465 | MS.gene043514:CDS | 40.0% | |
| GAAGAGAACCAGAAAGCAAA+TGG | + | chr2.2:8157931-8157950 | MS.gene043514:intron | 40.0% | |
| GATTCCGTAGGATATCGTAA+GGG | + | chr2.2:8157579-8157598 | MS.gene043514:intron | 40.0% | |
| GGTGAGTAGTTCTTCAAACT+TGG | + | chr2.2:8157987-8158006 | MS.gene043514:intron | 40.0% | |
| TAAGTCTGGCAATGAGAAGA+AGG | + | chr2.2:8156199-8156218 | MS.gene043514:CDS | 40.0% | |
| TACCTTGCGGAATTTAAGTC+TGG | + | chr2.2:8156185-8156204 | MS.gene043514:CDS | 40.0% | |
| TATGCAGCATAAAATGGCTG+AGG | - | chr2.2:8156804-8156823 | None:intergenic | 40.0% | |
| TCCTCTGTACCATGTATTGA+TGG | + | chr2.2:8156844-8156863 | MS.gene043514:intron | 40.0% | |
| TCTGTCTTCCATTGAGCAAA+AGG | + | chr2.2:8155881-8155900 | MS.gene043514:CDS | 40.0% | |
| TGATTGGAATGACTAATGGC+TGG | + | chr2.2:8157722-8157741 | MS.gene043514:intron | 40.0% | |
| TGGAACTGACTGTTGAAGAA+AGG | + | chr2.2:8155799-8155818 | MS.gene043514:CDS | 40.0% | |
| TGTTTGAATGTTCTGCTTGC+AGG | + | chr2.2:8156144-8156163 | MS.gene043514:intron | 40.0% | |
| TTCTTTGCACTTGCACATGT+TGG | - | chr2.2:8157645-8157664 | None:intergenic | 40.0% | |
| TTTGTAGGACTCCTCATTCA+AGG | - | chr2.2:8157419-8157438 | None:intergenic | 40.0% | |
| ! | GAAGTTTTCACGATCCTTAG+AGG | - | chr2.2:8155297-8155316 | None:intergenic | 40.0% |
| !! | ATTGATAGTGTGTTTGACGG+GGG | + | chr2.2:8157317-8157336 | MS.gene043514:intron | 40.0% |
| !! | GAAAGGAATTTGCTGTCTGT+TGG | + | chr2.2:8155816-8155835 | MS.gene043514:CDS | 40.0% |
| !! | TGTGAATGCGAAACGGATTA+AGG | + | chr2.2:8155923-8155942 | MS.gene043514:CDS | 40.0% |
| !!! | TTTTTTGCTGACAGAGATGG+TGG | + | chr2.2:8155746-8155765 | MS.gene043514:intron | 40.0% |
| AAAGCCAGACCCAATCGAAT+GGG | - | chr2.2:8157208-8157227 | None:intergenic | 45.0% | |
| ACTTCTGACATCCCAGAAGA+TGG | + | chr2.2:8157487-8157506 | MS.gene043514:CDS | 45.0% | |
| CAAAAGCCTGCTTTGCAAGA+TGG | - | chr2.2:8157372-8157391 | None:intergenic | 45.0% | |
| CAACAGTCAGTTCCACATCT+AGG | - | chr2.2:8155794-8155813 | None:intergenic | 45.0% | |
| CTAGCCCTTACGATATCCTA+CGG | - | chr2.2:8157586-8157605 | None:intergenic | 45.0% | |
| GAACAAGCTGAACGTTACGA+AGG | + | chr2.2:8155338-8155357 | MS.gene043514:CDS | 45.0% | |
| GAATGTTCTGCTTGCAGGAA+AGG | + | chr2.2:8156149-8156168 | MS.gene043514:intron | 45.0% | |
| GAATGTTGCGAACCTAGATG+TGG | + | chr2.2:8155779-8155798 | MS.gene043514:CDS | 45.0% | |
| GAGCAAAAGGAGGAGACTAA+AGG | + | chr2.2:8155894-8155913 | MS.gene043514:CDS | 45.0% | |
| GGATTCCGTAGGATATCGTA+AGG | + | chr2.2:8157578-8157597 | MS.gene043514:intron | 45.0% | |
| GGCTAGCAGTCATTTACAGT+TGG | + | chr2.2:8157600-8157619 | MS.gene043514:intron | 45.0% | |
| GTCTTCCATTGAGCAAAAGG+AGG | + | chr2.2:8155884-8155903 | MS.gene043514:CDS | 45.0% | |
| TGCCAGACTTAAATTCCGCA+AGG | - | chr2.2:8156190-8156209 | None:intergenic | 45.0% | |
| ! | AGTCTCCTCCTTTTGCTCAA+TGG | - | chr2.2:8155892-8155911 | None:intergenic | 45.0% |
| !! | TTCTGGTTCTCTTCTGTAGC+AGG | - | chr2.2:8157925-8157944 | None:intergenic | 45.0% |
| AACATGCAAGGGGGCAAACA+GGG | - | chr2.2:8156722-8156741 | None:intergenic | 50.0% | |
| AATCGAATGGGATGAGTGGG+GGG | - | chr2.2:8157196-8157215 | None:intergenic | 50.0% | |
| ACAGGAGTAAGGGATTCCGT+AGG | + | chr2.2:8157567-8157586 | MS.gene043514:intron | 50.0% | |
| ACCCAATCGAATGGGATGAG+TGG | - | chr2.2:8157200-8157219 | None:intergenic | 50.0% | |
| AGAGCTCGACACCTTGAATG+AGG | + | chr2.2:8157405-8157424 | MS.gene043514:CDS | 50.0% | |
| ATCACCCATGAGATCTACCC+AGG | - | chr2.2:8156304-8156323 | None:intergenic | 50.0% | |
| CAAAGCCAGACCCAATCGAA+TGG | - | chr2.2:8157209-8157228 | None:intergenic | 50.0% | |
| CAATCGAATGGGATGAGTGG+GGG | - | chr2.2:8157197-8157216 | None:intergenic | 50.0% | |
| CCAATCGAATGGGATGAGTG+GGG | - | chr2.2:8157198-8157217 | None:intergenic | 50.0% | |
| CCCAATCGAATGGGATGAGT+GGG | - | chr2.2:8157199-8157218 | None:intergenic | 50.0% | |
| CCCACTCATCCCATTCGATT+GGG | + | chr2.2:8157196-8157215 | MS.gene043514:CDS | 50.0% | |
| CTTATACCTTCGGCTACAGC+TGG | + | chr2.2:8156017-8156036 | MS.gene043514:CDS | 50.0% | |
| GGAAGACAGAATCCTCCATG+AGG | - | chr2.2:8155871-8155890 | None:intergenic | 50.0% | |
| GGAATGACTAATGGCTGGTG+TGG | + | chr2.2:8157727-8157746 | MS.gene043514:intron | 50.0% | |
| GGGGCAAACAGGGGATAAAA+GGG | - | chr2.2:8156712-8156731 | None:intergenic | 50.0% | |
| GTCTGGCAATGAGAAGAAGG+AGG | + | chr2.2:8156202-8156221 | MS.gene043514:CDS | 50.0% | |
| TAACATGCAAGGGGGCAAAC+AGG | - | chr2.2:8156723-8156742 | None:intergenic | 50.0% | |
| TAATTCAGCCTCTGCTGCAG+TGG | - | chr2.2:8157173-8157192 | None:intergenic | 50.0% | |
| TCATCCCATTCGATTGGGTC+TGG | + | chr2.2:8157201-8157220 | MS.gene043514:CDS | 50.0% | |
| TCTGACATCCCAGAAGATGG+AGG | + | chr2.2:8157490-8157509 | MS.gene043514:CDS | 50.0% | |
| TGCACCTGGGTAGATCTCAT+GGG | + | chr2.2:8156297-8156316 | MS.gene043514:intron | 50.0% | |
| TGTCAGAAGTCCAGAGAGTC+AGG | - | chr2.2:8157477-8157496 | None:intergenic | 50.0% | |
| TTGCACCTGGGTAGATCTCA+TGG | + | chr2.2:8156296-8156315 | MS.gene043514:intron | 50.0% | |
| ! | TTCAGCTTGTTCAGCGAGCT+TGG | - | chr2.2:8155330-8155349 | None:intergenic | 50.0% |
| !! | AGATGGCAGGCTCTGGAAAA+AGG | - | chr2.2:8157355-8157374 | None:intergenic | 50.0% |
| !! | TGGCAGTGCCATTTGCTTTC+TGG | - | chr2.2:8157942-8157961 | None:intergenic | 50.0% |
| AATGGCACTGCCAAGCTTGG+TGG | + | chr2.2:8157949-8157968 | MS.gene043514:CDS | 55.0% | |
| ACATGCAAGGGGGCAAACAG+GGG | - | chr2.2:8156721-8156740 | None:intergenic | 55.0% | |
| AGCCTGCCATCTTGCAAAGC+AGG | + | chr2.2:8157363-8157382 | MS.gene043514:CDS | 55.0% | |
| AGCCTGCTTTGCAAGATGGC+AGG | - | chr2.2:8157368-8157387 | None:intergenic | 55.0% | |
| CCCCACTCATCCCATTCGAT+TGG | + | chr2.2:8157195-8157214 | MS.gene043514:CDS | 55.0% | |
| CTTTGCAAGATGGCAGGCTC+TGG | - | chr2.2:8157362-8157381 | None:intergenic | 55.0% | |
| GATTCACCAGCTGTAGCCGA+AGG | - | chr2.2:8156026-8156045 | None:intergenic | 55.0% | |
| GCAAATGGCACTGCCAAGCT+TGG | + | chr2.2:8157946-8157965 | MS.gene043514:CDS | 55.0% | |
| GGCAATGAGAAGAAGGAGGC+TGG | + | chr2.2:8156206-8156225 | MS.gene043514:CDS | 55.0% | |
| GGGGGCAAACAGGGGATAAA+AGG | - | chr2.2:8156713-8156732 | None:intergenic | 55.0% | |
| TCAGGGACAACCTGACTCTC+TGG | + | chr2.2:8157464-8157483 | MS.gene043514:CDS | 55.0% | |
| ATCGTCGCCTCCACCAAGCT+TGG | - | chr2.2:8157962-8157981 | None:intergenic | 60.0% | |
| GTCTGCTACCACTGCAGCAG+AGG | + | chr2.2:8157162-8157181 | MS.gene043514:intron | 60.0% | |
| ! | TTGGTGCTCGCAGAGCCTCA+TGG | + | chr2.2:8155853-8155872 | MS.gene043514:CDS | 60.0% |
| GTGCTCGCAGAGCCTCATGG+AGG | + | chr2.2:8155856-8155875 | MS.gene043514:CDS | 65.0% | |
| TGGTGGAGGCGACGATGCAG+AGG | + | chr2.2:8157966-8157985 | MS.gene043514:CDS | 65.0% | |
| ! | GGCACTGCCAAGCTTGGTGG+AGG | + | chr2.2:8157952-8157971 | MS.gene043514:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 8155287 | 8158076 | 8155287 | ID=MS.gene043514 |
| chr2.2 | mRNA | 8155287 | 8158076 | 8155287 | ID=MS.gene043514.t1;Parent=MS.gene043514 |
| chr2.2 | exon | 8155287 | 8155359 | 8155287 | ID=MS.gene043514.t1.exon1;Parent=MS.gene043514.t1 |
| chr2.2 | CDS | 8155287 | 8155359 | 8155287 | ID=cds.MS.gene043514.t1;Parent=MS.gene043514.t1 |
| chr2.2 | exon | 8155760 | 8156066 | 8155760 | ID=MS.gene043514.t1.exon2;Parent=MS.gene043514.t1 |
| chr2.2 | CDS | 8155760 | 8156066 | 8155760 | ID=cds.MS.gene043514.t1;Parent=MS.gene043514.t1 |
| chr2.2 | exon | 8156166 | 8156253 | 8156166 | ID=MS.gene043514.t1.exon3;Parent=MS.gene043514.t1 |
| chr2.2 | CDS | 8156166 | 8156253 | 8156166 | ID=cds.MS.gene043514.t1;Parent=MS.gene043514.t1 |
| chr2.2 | exon | 8157163 | 8157272 | 8157163 | ID=MS.gene043514.t1.exon4;Parent=MS.gene043514.t1 |
| chr2.2 | CDS | 8157163 | 8157272 | 8157163 | ID=cds.MS.gene043514.t1;Parent=MS.gene043514.t1 |
| chr2.2 | exon | 8157363 | 8157511 | 8157363 | ID=MS.gene043514.t1.exon5;Parent=MS.gene043514.t1 |
| chr2.2 | CDS | 8157363 | 8157511 | 8157363 | ID=cds.MS.gene043514.t1;Parent=MS.gene043514.t1 |
| chr2.2 | exon | 8157932 | 8157987 | 8157932 | ID=MS.gene043514.t1.exon6;Parent=MS.gene043514.t1 |
| chr2.2 | CDS | 8157932 | 8157987 | 8157932 | ID=cds.MS.gene043514.t1;Parent=MS.gene043514.t1 |
| chr2.2 | exon | 8158074 | 8158076 | 8158074 | ID=MS.gene043514.t1.exon7;Parent=MS.gene043514.t1 |
| chr2.2 | CDS | 8158074 | 8158076 | 8158074 | ID=cds.MS.gene043514.t1;Parent=MS.gene043514.t1 |
| Gene Sequence |
| Protein sequence |
