Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54847.t1 | XP_013465242.1 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 9.50E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54847.t1 | P42654 | 95.8 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 2.2e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54847.t1 | A0A072VBW0 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 6.8e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54847 | MS.gene035837 | PPI |
| MS.gene54847 | MS.gene052176 | PPI |
| MS.gene54847 | MS.gene054662 | PPI |
| MS.gene54847 | MS.gene013133 | PPI |
| MS.gene54847 | MS.gene013047 | PPI |
| MS.gene54847 | MS.gene56475 | PPI |
| MS.gene54847 | MS.gene64150 | PPI |
| MS.gene55400 | MS.gene54847 | PPI |
| MS.gene54847 | MS.gene050079 | PPI |
| MS.gene54847 | MS.gene38593 | PPI |
| MS.gene54847 | MS.gene020411 | PPI |
| MS.gene54847 | MS.gene53188 | PPI |
| MS.gene54847 | MS.gene043907 | PPI |
| MS.gene006850 | MS.gene54847 | PPI |
| MS.gene54847 | MS.gene48435 | PPI |
| MS.gene54847 | MS.gene55401 | PPI |
| MS.gene54847 | MS.gene010179 | PPI |
| MS.gene066779 | MS.gene54847 | PPI |
| MS.gene54847 | MS.gene055488 | PPI |
| MS.gene54847 | MS.gene010180 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54847.t1 | MTR_2g091225 | 99.617 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 0.0 | 536 |
| MS.gene54847.t1 | MTR_2g091225 | 99.156 | 237 | 2 | 0 | 25 | 261 | 2 | 238 | 1.69e-177 | 488 |
| MS.gene54847.t1 | MTR_8g086270 | 83.203 | 256 | 43 | 0 | 1 | 256 | 1 | 256 | 1.03e-165 | 459 |
| MS.gene54847.t1 | MTR_2g015980 | 80.709 | 254 | 48 | 1 | 8 | 261 | 6 | 258 | 1.27e-155 | 433 |
| MS.gene54847.t1 | MTR_2g076960 | 77.308 | 260 | 57 | 2 | 1 | 259 | 1 | 259 | 2.45e-152 | 425 |
| MS.gene54847.t1 | MTR_4g083060 | 77.016 | 248 | 57 | 0 | 1 | 248 | 1 | 248 | 1.29e-144 | 406 |
| MS.gene54847.t1 | MTR_5g044160 | 75.410 | 244 | 60 | 0 | 1 | 244 | 1 | 244 | 9.71e-142 | 398 |
| MS.gene54847.t1 | MTR_5g064580 | 72.840 | 243 | 64 | 1 | 7 | 247 | 8 | 250 | 1.16e-129 | 368 |
| MS.gene54847.t1 | MTR_3g099380 | 72.428 | 243 | 65 | 2 | 2 | 242 | 3 | 245 | 3.51e-128 | 364 |
| MS.gene54847.t1 | MTR_3g100620 | 65.289 | 242 | 81 | 1 | 6 | 244 | 10 | 251 | 2.00e-115 | 331 |
| MS.gene54847.t1 | MTR_3g099380 | 69.154 | 201 | 60 | 2 | 2 | 200 | 3 | 203 | 1.12e-98 | 287 |
| MS.gene54847.t1 | MTR_0137s0020 | 52.564 | 234 | 105 | 3 | 7 | 237 | 11 | 241 | 1.76e-76 | 232 |
| MS.gene54847.t1 | MTR_3g014060 | 52.137 | 234 | 106 | 3 | 7 | 237 | 11 | 241 | 9.82e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54847.t1 | AT2G42590 | 82.443 | 262 | 45 | 1 | 1 | 261 | 1 | 262 | 3.66e-162 | 450 |
| MS.gene54847.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.00e-160 | 446 |
| MS.gene54847.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.04e-160 | 445 |
| MS.gene54847.t1 | AT1G26480 | 78.689 | 244 | 52 | 0 | 2 | 245 | 5 | 248 | 8.10e-148 | 414 |
| MS.gene54847.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.05e-142 | 399 |
| MS.gene54847.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.16e-142 | 399 |
| MS.gene54847.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 2.90e-135 | 382 |
| MS.gene54847.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 4.50e-135 | 381 |
| MS.gene54847.t1 | AT1G22300 | 77.637 | 237 | 53 | 0 | 6 | 242 | 4 | 240 | 1.02e-133 | 377 |
| MS.gene54847.t1 | AT1G78300 | 69.804 | 255 | 73 | 3 | 1 | 253 | 1 | 253 | 2.66e-127 | 362 |
| MS.gene54847.t1 | AT1G35160 | 68.110 | 254 | 79 | 2 | 2 | 253 | 6 | 259 | 8.89e-126 | 358 |
| MS.gene54847.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene54847.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene54847.t1 | AT4G09000 | 69.231 | 247 | 74 | 2 | 3 | 247 | 6 | 252 | 1.44e-125 | 358 |
| MS.gene54847.t1 | AT5G38480 | 71.545 | 246 | 67 | 3 | 7 | 249 | 4 | 249 | 8.63e-125 | 355 |
| MS.gene54847.t1 | AT1G35160 | 71.130 | 239 | 67 | 2 | 2 | 238 | 6 | 244 | 1.98e-124 | 356 |
| MS.gene54847.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene54847.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene54847.t1 | AT4G09000 | 70.711 | 239 | 68 | 2 | 2 | 238 | 5 | 243 | 1.28e-123 | 355 |
| MS.gene54847.t1 | AT5G65430 | 68.421 | 247 | 75 | 1 | 1 | 244 | 1 | 247 | 2.67e-123 | 351 |
| MS.gene54847.t1 | AT5G65430 | 68.852 | 244 | 73 | 1 | 1 | 241 | 1 | 244 | 8.41e-123 | 350 |
| MS.gene54847.t1 | AT5G65430 | 69.295 | 241 | 71 | 1 | 1 | 238 | 1 | 241 | 7.64e-122 | 348 |
| MS.gene54847.t1 | AT5G10450 | 65.992 | 247 | 81 | 1 | 1 | 244 | 1 | 247 | 3.96e-120 | 343 |
| MS.gene54847.t1 | AT5G10450 | 66.393 | 244 | 79 | 1 | 1 | 241 | 1 | 244 | 1.00e-119 | 342 |
| MS.gene54847.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 6.59e-119 | 340 |
| MS.gene54847.t1 | AT5G10450 | 63.498 | 263 | 86 | 2 | 1 | 253 | 1 | 263 | 7.63e-119 | 341 |
| MS.gene54847.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene54847.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene54847.t1 | AT1G78220 | 50.826 | 242 | 115 | 2 | 6 | 246 | 4 | 242 | 4.91e-82 | 246 |
| MS.gene54847.t1 | AT1G22290 | 51.196 | 209 | 78 | 5 | 11 | 214 | 9 | 198 | 7.81e-58 | 184 |
| MS.gene54847.t1 | AT1G22290 | 50.971 | 206 | 77 | 5 | 11 | 211 | 9 | 195 | 8.05e-58 | 183 |
Find 62 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGCCATTTGCTTTC+TGG | 0.064697 | 2.1:-9673895 | None:intergenic |
| AATCAAATCACAAACCTTTC+TGG | 0.212632 | 2.1:-9673226 | None:intergenic |
| TAATAATTACCTCCATCTTC+TGG | 0.221124 | 2.1:-9673454 | None:intergenic |
| TTTGTAGGACTCCTCATTTA+AGG | 0.285367 | 2.1:-9673371 | None:intergenic |
| TGTGAATGCGAAACGGATTA+AGG | 0.355677 | 2.1:+9671882 | MS.gene54847:CDS |
| GATCAATGTACTATCTTTGT+AGG | 0.365217 | 2.1:-9673386 | None:intergenic |
| ATCGACGATGGCTTCCTCTA+AGG | 0.395439 | 2.1:+9671240 | None:intergenic |
| AATAATTACCTCCATCTTCT+GGG | 0.401437 | 2.1:-9673453 | None:intergenic |
| CATTGATCATGCAACTTCTC+AGG | 0.402439 | 2.1:+9673401 | MS.gene54847:CDS |
| TGTCAGAAGTCCAGAGAGTC+AGG | 0.404705 | 2.1:-9673429 | None:intergenic |
| TCAGGGACAACCTGACTCTC+TGG | 0.410560 | 2.1:+9673419 | MS.gene54847:CDS |
| TCATCCCATTCGATTGGGTC+TGG | 0.415982 | 2.1:+9673162 | MS.gene54847:CDS |
| TACCTTGCGGAATTTAAGTC+TGG | 0.416992 | 2.1:+9672144 | MS.gene54847:CDS |
| CAACAGTCAGTTCCACATCT+AGG | 0.421840 | 2.1:-9671750 | None:intergenic |
| TTCAGCTTGTTCAGCGAGCT+TGG | 0.427417 | 2.1:-9671287 | None:intergenic |
| TCTGTCTTCCATTGAGCAAA+AGG | 0.429678 | 2.1:+9671840 | MS.gene54847:CDS |
| AGCCTGCCATCTTGCAAAGC+AGG | 0.444543 | 2.1:+9673318 | MS.gene54847:CDS |
| TGATGAACATCTTATACCTT+CGG | 0.454250 | 2.1:+9671966 | MS.gene54847:CDS |
| CCCCACTCATCCCATTCGAT+TGG | 0.457840 | 2.1:+9673156 | MS.gene54847:CDS |
| GTTGGTTATAAGAATGTGAT+TGG | 0.468424 | 2.1:+9671793 | MS.gene54847:CDS |
| CCCACTCATCCCATTCGATT+GGG | 0.479191 | 2.1:+9673157 | MS.gene54847:CDS |
| CAAAAGCCTGCTTTGCAAGA+TGG | 0.481933 | 2.1:-9673324 | None:intergenic |
| GCAAATGGCACTGCCAAGCT+TGG | 0.496595 | 2.1:+9673902 | MS.gene54847:CDS |
| GTCTGCTACCACTGCAGCAG+AGG | 0.500212 | 2.1:+9673123 | MS.gene54847:intron |
| AGCCTGCTTTGCAAGATGGC+AGG | 0.506046 | 2.1:-9673320 | None:intergenic |
| ATCGTCGCCTCCACCAAGCT+TGG | 0.506577 | 2.1:-9673915 | None:intergenic |
| GGCACTGCCAAGCTTGGTGG+AGG | 0.506966 | 2.1:+9673908 | MS.gene54847:CDS |
| AGATCTTGAATTCACCAGAA+AGG | 0.507071 | 2.1:+9673212 | MS.gene54847:CDS |
| CCCAATCGAATGGGATGAGT+GGG | 0.509191 | 2.1:-9673157 | None:intergenic |
| GAAGAGAACCAGAAAGCAAA+TGG | 0.511133 | 2.1:+9673887 | MS.gene54847:intron |
| TAAGTCTGGCAATGAGAAGA+AGG | 0.514312 | 2.1:+9672158 | MS.gene54847:CDS |
| AATGGCACTGCCAAGCTTGG+TGG | 0.517803 | 2.1:+9673905 | MS.gene54847:CDS |
| ACTTCTGACATCCCAGAAGA+TGG | 0.519225 | 2.1:+9673442 | MS.gene54847:CDS |
| CTTATACCTTCGGCTACTGC+TGG | 0.530970 | 2.1:+9671976 | MS.gene54847:CDS |
| GGCAATGAGAAGAAGGAGGC+TGG | 0.532302 | 2.1:+9672165 | MS.gene54847:CDS |
| TAATTCAGCCTCTGCTGCAG+TGG | 0.536762 | 2.1:-9673131 | None:intergenic |
| CAATCGAATGGGATGAGTGG+GGG | 0.551178 | 2.1:-9673155 | None:intergenic |
| AAAGCCAGACCCAATCGAAT+GGG | 0.552082 | 2.1:-9673166 | None:intergenic |
| GAGCAAAAGGAGGAGACTAA+AGG | 0.552658 | 2.1:+9671853 | MS.gene54847:CDS |
| CAAAGCCAGACCCAATCGAA+TGG | 0.557939 | 2.1:-9673167 | None:intergenic |
| AGAGCTCGACACCTTAAATG+AGG | 0.559187 | 2.1:+9673360 | MS.gene54847:CDS |
| GAAAGGAATTTGCTGTCTGT+TGG | 0.574692 | 2.1:+9671775 | MS.gene54847:CDS |
| GAAATGATGTGAATGCGAAA+CGG | 0.574811 | 2.1:+9671875 | MS.gene54847:CDS |
| TGGAACTGACTGTTGAAGAA+AGG | 0.579381 | 2.1:+9671758 | MS.gene54847:CDS |
| TGGTGGAGGCGACGATGCAG+AGG | 0.580215 | 2.1:+9673922 | MS.gene54847:CDS |
| ACCCAATCGAATGGGATGAG+TGG | 0.580587 | 2.1:-9673158 | None:intergenic |
| TTGGTGCTCGCAGAGCCTCA+TGG | 0.582624 | 2.1:+9671812 | MS.gene54847:CDS |
| AATCGAATGGGATGAGTGGG+GGG | 0.585658 | 2.1:-9673154 | None:intergenic |
| ATTGATCATGCAACTTCTCA+GGG | 0.603706 | 2.1:+9673402 | MS.gene54847:CDS |
| CCAATCGAATGGGATGAGTG+GGG | 0.618524 | 2.1:-9673156 | None:intergenic |
| TCAGTCAATGAAAGCATATG+AGG | 0.622769 | 2.1:+9672191 | MS.gene54847:CDS |
| GTCTTCCATTGAGCAAAAGG+AGG | 0.626094 | 2.1:+9671843 | MS.gene54847:CDS |
| TGCCAGACTTAAATTCCGCA+AGG | 0.629305 | 2.1:-9672146 | None:intergenic |
| AGATTATTATCGTTACCTTG+CGG | 0.641586 | 2.1:+9672131 | MS.gene54847:CDS |
| GAATGTTGCGAACCTAGATG+TGG | 0.666486 | 2.1:+9671738 | MS.gene54847:CDS |
| GATTCACCAGCAGTAGCCGA+AGG | 0.670335 | 2.1:-9671982 | None:intergenic |
| GATTAAGGAGTATAGAAACA+AGG | 0.677872 | 2.1:+9671897 | MS.gene54847:CDS |
| GAACAAGCTGAACGTTACGA+AGG | 0.678687 | 2.1:+9671298 | MS.gene54847:CDS |
| TCTGACATCCCAGAAGATGG+AGG | 0.682653 | 2.1:+9673445 | MS.gene54847:CDS |
| GTCTGGCAATGAGAAGAAGG+AGG | 0.687369 | 2.1:+9672161 | MS.gene54847:CDS |
| GGAAGACAGAATCCTCCATG+AGG | 0.726645 | 2.1:-9671827 | None:intergenic |
| GTGCTCGCAGAGCCTCATGG+AGG | 0.748786 | 2.1:+9671815 | MS.gene54847:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACCATATAAATTTTTTT+AGG | + | chr2.1:9672488-9672507 | MS.gene54847:intron | 10.0% |
| !! | AGTACATAAAAATGAAAATA+TGG | - | chr2.1:9672918-9672937 | None:intergenic | 15.0% |
| !!! | TAGTTTCTTTTATTAAAAAC+AGG | + | chr2.1:9672702-9672721 | MS.gene54847:intron | 15.0% |
| !!! | TATCAATTTTAATCAAAAAC+CGG | - | chr2.1:9673259-9673278 | None:intergenic | 15.0% |
| !! | ATACTAGAAGAAAATTAACA+TGG | - | chr2.1:9672957-9672976 | None:intergenic | 20.0% |
| !! | ATCAGATATATAACAATAGA+CGG | - | chr2.1:9672834-9672853 | None:intergenic | 20.0% |
| !! | GAAGTTTGCAATTAAATTAT+TGG | + | chr2.1:9672619-9672638 | MS.gene54847:intron | 20.0% |
| !! | GACACCTAAAAAAATTTATA+TGG | - | chr2.1:9672495-9672514 | None:intergenic | 20.0% |
| !!! | ATCAATTTTAATCAAAAACC+GGG | - | chr2.1:9673258-9673277 | None:intergenic | 20.0% |
| !!! | TAAAACAAAGTATTCTGAAT+AGG | - | chr2.1:9673060-9673079 | None:intergenic | 20.0% |
| ! | AAAAGAAACTATAACATGCA+AGG | - | chr2.1:9672693-9672712 | None:intergenic | 25.0% |
| ! | AAAGAAACTATAACATGCAA+GGG | - | chr2.1:9672692-9672711 | None:intergenic | 25.0% |
| ! | AGATGGAGGTAATTATTAAT+AGG | + | chr2.1:9673459-9673478 | MS.gene54847:intron | 25.0% |
| ! | ATGGTTTACTGTTTCAATTA+GGG | + | chr2.1:9671474-9671493 | MS.gene54847:intron | 25.0% |
| ! | TAATTGTAGAATCCAACAAT+GGG | + | chr2.1:9672451-9672470 | MS.gene54847:intron | 25.0% |
| ! | TATGGTTTACTGTTTCAATT+AGG | + | chr2.1:9671473-9671492 | MS.gene54847:intron | 25.0% |
| ! | TTAAAAACAGGATTGATTAC+TGG | + | chr2.1:9672714-9672733 | MS.gene54847:intron | 25.0% |
| ! | TTAATGCTGAACATAAATTG+TGG | + | chr2.1:9673798-9673817 | MS.gene54847:intron | 25.0% |
| ! | TTACACGTCAAATAATGATT+TGG | + | chr2.1:9673662-9673681 | MS.gene54847:intron | 25.0% |
| !! | ATCAAAGACATGAAATTTTC+AGG | - | chr2.1:9672393-9672412 | None:intergenic | 25.0% |
| !! | ATTGTGGTAGTTATTCTTTT+TGG | + | chr2.1:9673814-9673833 | MS.gene54847:intron | 25.0% |
| !! | CTATTAGCAATTGTTCTAAA+AGG | + | chr2.1:9672318-9672337 | MS.gene54847:intron | 25.0% |
| !! | GTAAAAGCATATAAAGATGA+AGG | - | chr2.1:9673646-9673665 | None:intergenic | 25.0% |
| !! | TAATGATTTGGAATGACTAA+TGG | + | chr2.1:9673674-9673693 | MS.gene54847:intron | 25.0% |
| !! | TTTATATGTTATTTGCACCT+GGG | + | chr2.1:9672243-9672262 | MS.gene54847:intron | 25.0% |
| !!! | AAAATTGATAGTGTGTTTGA+CGG | + | chr2.1:9673269-9673288 | MS.gene54847:intron | 25.0% |
| !!! | AAATTTTTTTAGGTGTCTTG+TGG | + | chr2.1:9672498-9672517 | MS.gene54847:intron | 25.0% |
| !!! | AAGTTCCAAATAACTTGTTT+TGG | - | chr2.1:9672544-9672563 | None:intergenic | 25.0% |
| !!! | CTGATGTGATTAAGTTTTTT+GGG | + | chr2.1:9672849-9672868 | MS.gene54847:intron | 25.0% |
| !!! | GAAATCAAGAAGTTTTAAGT+AGG | - | chr2.1:9673094-9673113 | None:intergenic | 25.0% |
| !!! | TCATGTTTTATTCTCTACTA+TGG | + | chr2.1:9672034-9672053 | MS.gene54847:intron | 25.0% |
| !!! | TCTGATGTGATTAAGTTTTT+TGG | + | chr2.1:9672848-9672867 | MS.gene54847:intron | 25.0% |
| AAGAAACTATAACATGCAAG+GGG | - | chr2.1:9672691-9672710 | None:intergenic | 30.0% | |
| AATAATTACCTCCATCTTCT+GGG | - | chr2.1:9673456-9673475 | None:intergenic | 30.0% | |
| AATCAAATCACAAACCTTTC+TGG | - | chr2.1:9673229-9673248 | None:intergenic | 30.0% | |
| AGATTATTATCGTTACCTTG+CGG | + | chr2.1:9672131-9672150 | MS.gene54847:CDS | 30.0% | |
| ATTGTGAATAAACCCATTGT+TGG | - | chr2.1:9672466-9672485 | None:intergenic | 30.0% | |
| CTAATTGTAGAATCCAACAA+TGG | + | chr2.1:9672450-9672469 | MS.gene54847:intron | 30.0% | |
| GATCAATGTACTATCTTTGT+AGG | - | chr2.1:9673389-9673408 | None:intergenic | 30.0% | |
| GCAATATATGCAGCATAAAA+TGG | - | chr2.1:9672769-9672788 | None:intergenic | 30.0% | |
| GTTGGTTATAAGAATGTGAT+TGG | + | chr2.1:9671793-9671812 | MS.gene54847:CDS | 30.0% | |
| TAATAATTACCTCCATCTTC+TGG | - | chr2.1:9673457-9673476 | None:intergenic | 30.0% | |
| TGAAAATATGGATGAAAGCT+AGG | - | chr2.1:9672906-9672925 | None:intergenic | 30.0% | |
| TGATGAACATCTTATACCTT+CGG | + | chr2.1:9671966-9671985 | MS.gene54847:CDS | 30.0% | |
| TTTGTCAGTGTTAGTGTTTA+TGG | + | chr2.1:9671455-9671474 | MS.gene54847:intron | 30.0% | |
| ! | AAGATGTTTTACAGGAGTAA+GGG | + | chr2.1:9673512-9673531 | MS.gene54847:intron | 30.0% |
| ! | GATTAAGGAGTATAGAAACA+AGG | + | chr2.1:9671897-9671916 | MS.gene54847:CDS | 30.0% |
| ! | GCTCTATTAAGATGTTTTAC+AGG | + | chr2.1:9673504-9673523 | MS.gene54847:intron | 30.0% |
| ! | GTTTATATGTTATTTGCACC+TGG | + | chr2.1:9672242-9672261 | MS.gene54847:intron | 30.0% |
| ! | TAAGATGTTTTACAGGAGTA+AGG | + | chr2.1:9673511-9673530 | MS.gene54847:intron | 30.0% |
| !! | AAATTGATAGTGTGTTTGAC+GGG | + | chr2.1:9673270-9673289 | MS.gene54847:intron | 30.0% |
| !! | TGTGATTTGATTTTGTAACC+CGG | + | chr2.1:9673237-9673256 | MS.gene54847:intron | 30.0% |
| !! | TTTTGGTTGTCCTTTTTCTA+TGG | + | chr2.1:9673831-9673850 | MS.gene54847:intron | 30.0% |
| !!! | TTTTTTTTTGCTGACAGAGA+TGG | + | chr2.1:9671702-9671721 | MS.gene54847:intron | 30.0% |
| ACAGGATTGATTACTGGAAT+TGG | + | chr2.1:9672720-9672739 | MS.gene54847:intron | 35.0% | |
| AGAAACTATAACATGCAAGG+GGG | - | chr2.1:9672690-9672709 | None:intergenic | 35.0% | |
| AGATCTTGAATTCACCAGAA+AGG | + | chr2.1:9673212-9673231 | MS.gene54847:CDS | 35.0% | |
| AGCAGGAAGTCAGAAAAATT+CGG | - | chr2.1:9673864-9673883 | None:intergenic | 35.0% | |
| AGCATTAAATCTCACTGTCT+AGG | - | chr2.1:9673786-9673805 | None:intergenic | 35.0% | |
| ATATGGATGAAAGCTAGGAA+AGG | - | chr2.1:9672901-9672920 | None:intergenic | 35.0% | |
| ATTGATCATGCAACTTCTCA+GGG | + | chr2.1:9673402-9673421 | MS.gene54847:CDS | 35.0% | |
| CGGTAAACATCCATAGAAAA+AGG | - | chr2.1:9673844-9673863 | None:intergenic | 35.0% | |
| GAAATGATGTGAATGCGAAA+CGG | + | chr2.1:9671875-9671894 | MS.gene54847:CDS | 35.0% | |
| GCACATGTTGGATAATTTGA+GGG | - | chr2.1:9673588-9673607 | None:intergenic | 35.0% | |
| GTAAACACAAAGTCGTCAAA+TGG | - | chr2.1:9672580-9672599 | None:intergenic | 35.0% | |
| GTCTAGGTGACTTCATATAT+AGG | - | chr2.1:9673770-9673789 | None:intergenic | 35.0% | |
| TGCACATGTTGGATAATTTG+AGG | - | chr2.1:9673589-9673608 | None:intergenic | 35.0% | |
| TGCAGCCAAAACAAGTTATT+TGG | + | chr2.1:9672536-9672555 | MS.gene54847:intron | 35.0% | |
| TTGAAAGAGCTGTTAGTCAT+AGG | + | chr2.1:9673029-9673048 | MS.gene54847:intron | 35.0% | |
| TTTGTAGGACTCCTCATTTA+AGG | - | chr2.1:9673374-9673393 | None:intergenic | 35.0% | |
| ! | TCAGTCAATGAAAGCATATG+AGG | + | chr2.1:9672191-9672210 | MS.gene54847:CDS | 35.0% |
| !! | AATTGATAGTGTGTTTGACG+GGG | + | chr2.1:9673271-9673290 | MS.gene54847:intron | 35.0% |
| !!! | GTTTTGCACAAGTTGATTGT+GGG | + | chr2.1:9672079-9672098 | MS.gene54847:intron | 35.0% |
| !!! | TGTTTTGCACAAGTTGATTG+TGG | + | chr2.1:9672078-9672097 | MS.gene54847:intron | 35.0% |
| AAAGGGAAAAACAATGCAGC+AGG | - | chr2.1:9672654-9672673 | None:intergenic | 40.0% | |
| ACCATCAATACATGGTACAG+AGG | - | chr2.1:9672807-9672826 | None:intergenic | 40.0% | |
| ACGGAAGAACCATCAATACA+TGG | - | chr2.1:9672815-9672834 | None:intergenic | 40.0% | |
| CATTGATCATGCAACTTCTC+AGG | + | chr2.1:9673401-9673420 | MS.gene54847:CDS | 40.0% | |
| GAAGAGAACCAGAAAGCAAA+TGG | + | chr2.1:9673887-9673906 | MS.gene54847:intron | 40.0% | |
| GATTCCGTAGGATATCGTAA+AGG | + | chr2.1:9673534-9673553 | MS.gene54847:intron | 40.0% | |
| GGTGAGTAGTTCTTCAAACT+TGG | + | chr2.1:9673943-9673962 | MS.gene54847:intron | 40.0% | |
| TAAGTCTGGCAATGAGAAGA+AGG | + | chr2.1:9672158-9672177 | MS.gene54847:CDS | 40.0% | |
| TACCTTGCGGAATTTAAGTC+TGG | + | chr2.1:9672144-9672163 | MS.gene54847:CDS | 40.0% | |
| TATGCAGCATAAAATGGCTG+AGG | - | chr2.1:9672763-9672782 | None:intergenic | 40.0% | |
| TCCTCTGTACCATGTATTGA+TGG | + | chr2.1:9672803-9672822 | MS.gene54847:intron | 40.0% | |
| TCTGTCTTCCATTGAGCAAA+AGG | + | chr2.1:9671840-9671859 | MS.gene54847:CDS | 40.0% | |
| TGGAACTGACTGTTGAAGAA+AGG | + | chr2.1:9671758-9671777 | MS.gene54847:CDS | 40.0% | |
| TGTTTGAATGTTCTGCTTGC+AGG | + | chr2.1:9672103-9672122 | MS.gene54847:intron | 40.0% | |
| TTCTTTGCACTTGCACATGT+TGG | - | chr2.1:9673600-9673619 | None:intergenic | 40.0% | |
| ! | CTAGCCTTTACGATATCCTA+CGG | - | chr2.1:9673541-9673560 | None:intergenic | 40.0% |
| ! | GAAGTTTTCACGATCCTTAG+AGG | - | chr2.1:9671257-9671276 | None:intergenic | 40.0% |
| ! | GATTTGGAATGACTAATGGC+TGG | + | chr2.1:9673678-9673697 | MS.gene54847:intron | 40.0% |
| !! | ATTGATAGTGTGTTTGACGG+GGG | + | chr2.1:9673272-9673291 | MS.gene54847:intron | 40.0% |
| !! | GAAAGGAATTTGCTGTCTGT+TGG | + | chr2.1:9671775-9671794 | MS.gene54847:CDS | 40.0% |
| !! | TGTGAATGCGAAACGGATTA+AGG | + | chr2.1:9671882-9671901 | MS.gene54847:CDS | 40.0% |
| !!! | TTTTTTGCTGACAGAGATGG+TGG | + | chr2.1:9671705-9671724 | MS.gene54847:intron | 40.0% |
| AAAGCCAGACCCAATCGAAT+GGG | - | chr2.1:9673169-9673188 | None:intergenic | 45.0% | |
| ACTTCTGACATCCCAGAAGA+TGG | + | chr2.1:9673442-9673461 | MS.gene54847:CDS | 45.0% | |
| AGAGCTCGACACCTTAAATG+AGG | + | chr2.1:9673360-9673379 | MS.gene54847:CDS | 45.0% | |
| CAAAAGCCTGCTTTGCAAGA+TGG | - | chr2.1:9673327-9673346 | None:intergenic | 45.0% | |
| CAACAGTCAGTTCCACATCT+AGG | - | chr2.1:9671753-9671772 | None:intergenic | 45.0% | |
| GAACAAGCTGAACGTTACGA+AGG | + | chr2.1:9671298-9671317 | MS.gene54847:CDS | 45.0% | |
| GAATGTTCTGCTTGCAGGAA+AGG | + | chr2.1:9672108-9672127 | MS.gene54847:intron | 45.0% | |
| GAATGTTGCGAACCTAGATG+TGG | + | chr2.1:9671738-9671757 | MS.gene54847:CDS | 45.0% | |
| GAGCAAAAGGAGGAGACTAA+AGG | + | chr2.1:9671853-9671872 | MS.gene54847:CDS | 45.0% | |
| GTCTTCCATTGAGCAAAAGG+AGG | + | chr2.1:9671843-9671862 | MS.gene54847:CDS | 45.0% | |
| TGCCAGACTTAAATTCCGCA+AGG | - | chr2.1:9672149-9672168 | None:intergenic | 45.0% | |
| ! | AGTCTCCTCCTTTTGCTCAA+TGG | - | chr2.1:9671851-9671870 | None:intergenic | 45.0% |
| !! | TTCTGGTTCTCTTCTGTAGC+AGG | - | chr2.1:9673881-9673900 | None:intergenic | 45.0% |
| AACATGCAAGGGGGCAAACA+GGG | - | chr2.1:9672681-9672700 | None:intergenic | 50.0% | |
| AATCGAATGGGATGAGTGGG+GGG | - | chr2.1:9673157-9673176 | None:intergenic | 50.0% | |
| ACAGGAGTAAGGGATTCCGT+AGG | + | chr2.1:9673522-9673541 | MS.gene54847:intron | 50.0% | |
| ACCCAATCGAATGGGATGAG+TGG | - | chr2.1:9673161-9673180 | None:intergenic | 50.0% | |
| ATCACCCATGAGATCTACCC+AGG | - | chr2.1:9672263-9672282 | None:intergenic | 50.0% | |
| CAAAGCCAGACCCAATCGAA+TGG | - | chr2.1:9673170-9673189 | None:intergenic | 50.0% | |
| CAATCGAATGGGATGAGTGG+GGG | - | chr2.1:9673158-9673177 | None:intergenic | 50.0% | |
| CCAATCGAATGGGATGAGTG+GGG | - | chr2.1:9673159-9673178 | None:intergenic | 50.0% | |
| CCCAATCGAATGGGATGAGT+GGG | - | chr2.1:9673160-9673179 | None:intergenic | 50.0% | |
| CCCACTCATCCCATTCGATT+GGG | + | chr2.1:9673157-9673176 | MS.gene54847:CDS | 50.0% | |
| CTTATACCTTCGGCTACTGC+TGG | + | chr2.1:9671976-9671995 | MS.gene54847:CDS | 50.0% | |
| GGAAGACAGAATCCTCCATG+AGG | - | chr2.1:9671830-9671849 | None:intergenic | 50.0% | |
| GGAATGACTAATGGCTGGTG+TGG | + | chr2.1:9673683-9673702 | MS.gene54847:intron | 50.0% | |
| GGGGCAAACAGGGGATAAAA+GGG | - | chr2.1:9672671-9672690 | None:intergenic | 50.0% | |
| GTCTGGCAATGAGAAGAAGG+AGG | + | chr2.1:9672161-9672180 | MS.gene54847:CDS | 50.0% | |
| TAACATGCAAGGGGGCAAAC+AGG | - | chr2.1:9672682-9672701 | None:intergenic | 50.0% | |
| TAATTCAGCCTCTGCTGCAG+TGG | - | chr2.1:9673134-9673153 | None:intergenic | 50.0% | |
| TCATCCCATTCGATTGGGTC+TGG | + | chr2.1:9673162-9673181 | MS.gene54847:CDS | 50.0% | |
| TCTGACATCCCAGAAGATGG+AGG | + | chr2.1:9673445-9673464 | MS.gene54847:CDS | 50.0% | |
| TGCACCTGGGTAGATCTCAT+GGG | + | chr2.1:9672256-9672275 | MS.gene54847:intron | 50.0% | |
| TGTCAGAAGTCCAGAGAGTC+AGG | - | chr2.1:9673432-9673451 | None:intergenic | 50.0% | |
| TTGCACCTGGGTAGATCTCA+TGG | + | chr2.1:9672255-9672274 | MS.gene54847:intron | 50.0% | |
| ! | TTCAGCTTGTTCAGCGAGCT+TGG | - | chr2.1:9671290-9671309 | None:intergenic | 50.0% |
| !! | AGATGGCAGGCTCTGGAAAA+AGG | - | chr2.1:9673310-9673329 | None:intergenic | 50.0% |
| !! | TGGCAGTGCCATTTGCTTTC+TGG | - | chr2.1:9673898-9673917 | None:intergenic | 50.0% |
| AATGGCACTGCCAAGCTTGG+TGG | + | chr2.1:9673905-9673924 | MS.gene54847:CDS | 55.0% | |
| ACATGCAAGGGGGCAAACAG+GGG | - | chr2.1:9672680-9672699 | None:intergenic | 55.0% | |
| AGCCTGCCATCTTGCAAAGC+AGG | + | chr2.1:9673318-9673337 | MS.gene54847:CDS | 55.0% | |
| AGCCTGCTTTGCAAGATGGC+AGG | - | chr2.1:9673323-9673342 | None:intergenic | 55.0% | |
| CCCCACTCATCCCATTCGAT+TGG | + | chr2.1:9673156-9673175 | MS.gene54847:CDS | 55.0% | |
| CTTTGCAAGATGGCAGGCTC+TGG | - | chr2.1:9673317-9673336 | None:intergenic | 55.0% | |
| GATTCACCAGCAGTAGCCGA+AGG | - | chr2.1:9671985-9672004 | None:intergenic | 55.0% | |
| GCAAATGGCACTGCCAAGCT+TGG | + | chr2.1:9673902-9673921 | MS.gene54847:CDS | 55.0% | |
| GGCAATGAGAAGAAGGAGGC+TGG | + | chr2.1:9672165-9672184 | MS.gene54847:CDS | 55.0% | |
| GGGGGCAAACAGGGGATAAA+AGG | - | chr2.1:9672672-9672691 | None:intergenic | 55.0% | |
| TCAGGGACAACCTGACTCTC+TGG | + | chr2.1:9673419-9673438 | MS.gene54847:CDS | 55.0% | |
| ATCGTCGCCTCCACCAAGCT+TGG | - | chr2.1:9673918-9673937 | None:intergenic | 60.0% | |
| GTCTGCTACCACTGCAGCAG+AGG | + | chr2.1:9673123-9673142 | MS.gene54847:intron | 60.0% | |
| ! | TTGGTGCTCGCAGAGCCTCA+TGG | + | chr2.1:9671812-9671831 | MS.gene54847:CDS | 60.0% |
| GTGCTCGCAGAGCCTCATGG+AGG | + | chr2.1:9671815-9671834 | MS.gene54847:CDS | 65.0% | |
| TGGTGGAGGCGACGATGCAG+AGG | + | chr2.1:9673922-9673941 | MS.gene54847:CDS | 65.0% | |
| ! | GGCACTGCCAAGCTTGGTGG+AGG | + | chr2.1:9673908-9673927 | MS.gene54847:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 9671247 | 9674032 | 9671247 | ID=MS.gene54847 |
| chr2.1 | mRNA | 9671247 | 9674032 | 9671247 | ID=MS.gene54847.t1;Parent=MS.gene54847 |
| chr2.1 | exon | 9671247 | 9671319 | 9671247 | ID=MS.gene54847.t1.exon1;Parent=MS.gene54847.t1 |
| chr2.1 | CDS | 9671247 | 9671319 | 9671247 | ID=cds.MS.gene54847.t1;Parent=MS.gene54847.t1 |
| chr2.1 | exon | 9671719 | 9672025 | 9671719 | ID=MS.gene54847.t1.exon2;Parent=MS.gene54847.t1 |
| chr2.1 | CDS | 9671719 | 9672025 | 9671719 | ID=cds.MS.gene54847.t1;Parent=MS.gene54847.t1 |
| chr2.1 | exon | 9672125 | 9672212 | 9672125 | ID=MS.gene54847.t1.exon3;Parent=MS.gene54847.t1 |
| chr2.1 | CDS | 9672125 | 9672212 | 9672125 | ID=cds.MS.gene54847.t1;Parent=MS.gene54847.t1 |
| chr2.1 | exon | 9673124 | 9673233 | 9673124 | ID=MS.gene54847.t1.exon4;Parent=MS.gene54847.t1 |
| chr2.1 | CDS | 9673124 | 9673233 | 9673124 | ID=cds.MS.gene54847.t1;Parent=MS.gene54847.t1 |
| chr2.1 | exon | 9673318 | 9673466 | 9673318 | ID=MS.gene54847.t1.exon5;Parent=MS.gene54847.t1 |
| chr2.1 | CDS | 9673318 | 9673466 | 9673318 | ID=cds.MS.gene54847.t1;Parent=MS.gene54847.t1 |
| chr2.1 | exon | 9673888 | 9673943 | 9673888 | ID=MS.gene54847.t1.exon6;Parent=MS.gene54847.t1 |
| chr2.1 | CDS | 9673888 | 9673943 | 9673888 | ID=cds.MS.gene54847.t1;Parent=MS.gene54847.t1 |
| chr2.1 | exon | 9674030 | 9674032 | 9674030 | ID=MS.gene54847.t1.exon7;Parent=MS.gene54847.t1 |
| chr2.1 | CDS | 9674030 | 9674032 | 9674030 | ID=cds.MS.gene54847.t1;Parent=MS.gene54847.t1 |
| Gene Sequence |
| Protein sequence |
