Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028807.t1 | XP_013465242.1 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 9.50E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028807.t1 | P42654 | 95.8 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 2.2e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028807.t1 | A0A072VBW0 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 6.8e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55401 | MS.gene028807 | PPI |
| MS.gene066779 | MS.gene028807 | PPI |
| MS.gene028807 | MS.gene64150 | PPI |
| MS.gene38593 | MS.gene028807 | PPI |
| MS.gene010180 | MS.gene028807 | PPI |
| MS.gene028807 | MS.gene043907 | PPI |
| MS.gene56475 | MS.gene028807 | PPI |
| MS.gene010179 | MS.gene028807 | PPI |
| MS.gene028807 | MS.gene53188 | PPI |
| MS.gene48435 | MS.gene028807 | PPI |
| MS.gene55400 | MS.gene028807 | PPI |
| MS.gene020411 | MS.gene028807 | PPI |
| MS.gene028807 | MS.gene052176 | PPI |
| MS.gene013133 | MS.gene028807 | PPI |
| MS.gene028807 | MS.gene054662 | PPI |
| MS.gene006850 | MS.gene028807 | PPI |
| MS.gene050079 | MS.gene028807 | PPI |
| MS.gene035837 | MS.gene028807 | PPI |
| MS.gene055488 | MS.gene028807 | PPI |
| MS.gene013047 | MS.gene028807 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028807.t1 | MTR_2g091225 | 99.617 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 0.0 | 536 |
| MS.gene028807.t1 | MTR_2g091225 | 99.156 | 237 | 2 | 0 | 25 | 261 | 2 | 238 | 1.69e-177 | 488 |
| MS.gene028807.t1 | MTR_8g086270 | 83.203 | 256 | 43 | 0 | 1 | 256 | 1 | 256 | 1.03e-165 | 459 |
| MS.gene028807.t1 | MTR_2g015980 | 80.709 | 254 | 48 | 1 | 8 | 261 | 6 | 258 | 1.27e-155 | 433 |
| MS.gene028807.t1 | MTR_2g076960 | 77.308 | 260 | 57 | 2 | 1 | 259 | 1 | 259 | 2.45e-152 | 425 |
| MS.gene028807.t1 | MTR_4g083060 | 77.016 | 248 | 57 | 0 | 1 | 248 | 1 | 248 | 1.29e-144 | 406 |
| MS.gene028807.t1 | MTR_5g044160 | 75.410 | 244 | 60 | 0 | 1 | 244 | 1 | 244 | 9.71e-142 | 398 |
| MS.gene028807.t1 | MTR_5g064580 | 72.840 | 243 | 64 | 1 | 7 | 247 | 8 | 250 | 1.16e-129 | 368 |
| MS.gene028807.t1 | MTR_3g099380 | 72.428 | 243 | 65 | 2 | 2 | 242 | 3 | 245 | 3.51e-128 | 364 |
| MS.gene028807.t1 | MTR_3g100620 | 65.289 | 242 | 81 | 1 | 6 | 244 | 10 | 251 | 2.00e-115 | 331 |
| MS.gene028807.t1 | MTR_3g099380 | 69.154 | 201 | 60 | 2 | 2 | 200 | 3 | 203 | 1.12e-98 | 287 |
| MS.gene028807.t1 | MTR_0137s0020 | 52.564 | 234 | 105 | 3 | 7 | 237 | 11 | 241 | 1.76e-76 | 232 |
| MS.gene028807.t1 | MTR_3g014060 | 52.137 | 234 | 106 | 3 | 7 | 237 | 11 | 241 | 9.82e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028807.t1 | AT2G42590 | 82.443 | 262 | 45 | 1 | 1 | 261 | 1 | 262 | 3.66e-162 | 450 |
| MS.gene028807.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.00e-160 | 446 |
| MS.gene028807.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.04e-160 | 445 |
| MS.gene028807.t1 | AT1G26480 | 78.689 | 244 | 52 | 0 | 2 | 245 | 5 | 248 | 8.10e-148 | 414 |
| MS.gene028807.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.05e-142 | 399 |
| MS.gene028807.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.16e-142 | 399 |
| MS.gene028807.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 2.90e-135 | 382 |
| MS.gene028807.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 4.50e-135 | 381 |
| MS.gene028807.t1 | AT1G22300 | 77.637 | 237 | 53 | 0 | 6 | 242 | 4 | 240 | 1.02e-133 | 377 |
| MS.gene028807.t1 | AT1G78300 | 69.804 | 255 | 73 | 3 | 1 | 253 | 1 | 253 | 2.66e-127 | 362 |
| MS.gene028807.t1 | AT1G35160 | 68.110 | 254 | 79 | 2 | 2 | 253 | 6 | 259 | 8.89e-126 | 358 |
| MS.gene028807.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene028807.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene028807.t1 | AT4G09000 | 69.231 | 247 | 74 | 2 | 3 | 247 | 6 | 252 | 1.44e-125 | 358 |
| MS.gene028807.t1 | AT5G38480 | 71.545 | 246 | 67 | 3 | 7 | 249 | 4 | 249 | 8.63e-125 | 355 |
| MS.gene028807.t1 | AT1G35160 | 71.130 | 239 | 67 | 2 | 2 | 238 | 6 | 244 | 1.98e-124 | 356 |
| MS.gene028807.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene028807.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene028807.t1 | AT4G09000 | 70.711 | 239 | 68 | 2 | 2 | 238 | 5 | 243 | 1.28e-123 | 355 |
| MS.gene028807.t1 | AT5G65430 | 68.421 | 247 | 75 | 1 | 1 | 244 | 1 | 247 | 2.67e-123 | 351 |
| MS.gene028807.t1 | AT5G65430 | 68.852 | 244 | 73 | 1 | 1 | 241 | 1 | 244 | 8.41e-123 | 350 |
| MS.gene028807.t1 | AT5G65430 | 69.295 | 241 | 71 | 1 | 1 | 238 | 1 | 241 | 7.64e-122 | 348 |
| MS.gene028807.t1 | AT5G10450 | 65.992 | 247 | 81 | 1 | 1 | 244 | 1 | 247 | 3.96e-120 | 343 |
| MS.gene028807.t1 | AT5G10450 | 66.393 | 244 | 79 | 1 | 1 | 241 | 1 | 244 | 1.00e-119 | 342 |
| MS.gene028807.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 6.59e-119 | 340 |
| MS.gene028807.t1 | AT5G10450 | 63.498 | 263 | 86 | 2 | 1 | 253 | 1 | 263 | 7.63e-119 | 341 |
| MS.gene028807.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene028807.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene028807.t1 | AT1G78220 | 50.826 | 242 | 115 | 2 | 6 | 246 | 4 | 242 | 4.91e-82 | 246 |
| MS.gene028807.t1 | AT1G22290 | 51.196 | 209 | 78 | 5 | 11 | 214 | 9 | 198 | 7.81e-58 | 184 |
| MS.gene028807.t1 | AT1G22290 | 50.971 | 206 | 77 | 5 | 11 | 211 | 9 | 195 | 8.05e-58 | 183 |
Find 62 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGCCATTTGCTTTC+TGG | 0.064697 | 2.3:-9017456 | None:intergenic |
| ATTCAAATCACAAACCTTTC+TGG | 0.151393 | 2.3:-9016782 | None:intergenic |
| TAATAATTACCTCCATCTTC+TGG | 0.221124 | 2.3:-9017016 | None:intergenic |
| TGTGAATGCGAAACGGATTA+AGG | 0.355677 | 2.3:+9015438 | MS.gene028807:CDS |
| GATCAATGTACTATCTTTGT+AGG | 0.365217 | 2.3:-9016948 | None:intergenic |
| ATCGACGATGGCTTCCTCTA+AGG | 0.395439 | 2.3:+9014792 | None:intergenic |
| AATAATTACCTCCATCTTCT+GGG | 0.401437 | 2.3:-9017015 | None:intergenic |
| CATTGATCATGCAACTTCTC+AGG | 0.402439 | 2.3:+9016963 | MS.gene028807:CDS |
| TGTCAGAAGTCCAGAGAGTC+AGG | 0.404705 | 2.3:-9016991 | None:intergenic |
| TCAGGGACAACCTGACTCTC+TGG | 0.410560 | 2.3:+9016981 | MS.gene028807:CDS |
| TCATCCCATTCGATTGGGTC+TGG | 0.415982 | 2.3:+9016718 | MS.gene028807:CDS |
| TACCTTGCGGAATTTAAGTC+TGG | 0.416992 | 2.3:+9015700 | MS.gene028807:CDS |
| CAACAGTCAGTTCCACATCT+AGG | 0.421840 | 2.3:-9015306 | None:intergenic |
| TTCAGCTTGTTCAGCGAGCT+TGG | 0.427417 | 2.3:-9014839 | None:intergenic |
| TCTGTCTTCCATTGAGCAAA+AGG | 0.429678 | 2.3:+9015396 | MS.gene028807:CDS |
| AGCCTGCCATCTTGCAAAGC+AGG | 0.444543 | 2.3:+9016880 | MS.gene028807:CDS |
| TGATGAACATCTTATACCTT+CGG | 0.454250 | 2.3:+9015522 | MS.gene028807:CDS |
| CCCCACTCATCCCATTCGAT+TGG | 0.457840 | 2.3:+9016712 | MS.gene028807:CDS |
| TTTGTAGGACTCCTCATTCA+AGG | 0.458681 | 2.3:-9016933 | None:intergenic |
| GTTGGTTATAAGAATGTGAT+TGG | 0.468424 | 2.3:+9015349 | MS.gene028807:CDS |
| CCCACTCATCCCATTCGATT+GGG | 0.479191 | 2.3:+9016713 | MS.gene028807:CDS |
| CAAAAGCCTGCTTTGCAAGA+TGG | 0.481933 | 2.3:-9016886 | None:intergenic |
| GCAAATGGCACTGCCAAGCT+TGG | 0.496595 | 2.3:+9017463 | MS.gene028807:CDS |
| GTCTGCTACCACTGCAGCAG+AGG | 0.500212 | 2.3:+9016679 | MS.gene028807:intron |
| AGCCTGCTTTGCAAGATGGC+AGG | 0.506046 | 2.3:-9016882 | None:intergenic |
| ATCGTCGCCTCCACCAAGCT+TGG | 0.506577 | 2.3:-9017476 | None:intergenic |
| GGCACTGCCAAGCTTGGTGG+AGG | 0.506966 | 2.3:+9017469 | MS.gene028807:CDS |
| AGATCTTGAATTCACCAGAA+AGG | 0.507071 | 2.3:+9016768 | MS.gene028807:CDS |
| CCCAATCGAATGGGATGAGT+GGG | 0.509191 | 2.3:-9016713 | None:intergenic |
| GAAGAGAACCAGAAAGCAAA+TGG | 0.511133 | 2.3:+9017448 | MS.gene028807:intron |
| TAAGTCTGGCAATGAGAAGA+AGG | 0.514312 | 2.3:+9015714 | MS.gene028807:CDS |
| AATGGCACTGCCAAGCTTGG+TGG | 0.517803 | 2.3:+9017466 | MS.gene028807:CDS |
| ACTTCTGACATCCCAGAAGA+TGG | 0.519225 | 2.3:+9017004 | MS.gene028807:CDS |
| GGCAATGAGAAGAAGGAGGC+TGG | 0.532302 | 2.3:+9015721 | MS.gene028807:CDS |
| TAATTCAGCCTCTGCTGCAG+TGG | 0.536762 | 2.3:-9016687 | None:intergenic |
| AGAGCTCGACACCTTGAATG+AGG | 0.538643 | 2.3:+9016922 | MS.gene028807:CDS |
| CTTATACCTTCGGCTACAGC+TGG | 0.546040 | 2.3:+9015532 | MS.gene028807:CDS |
| CAATCGAATGGGATGAGTGG+GGG | 0.551178 | 2.3:-9016711 | None:intergenic |
| AAAGCCAGACCCAATCGAAT+GGG | 0.552082 | 2.3:-9016722 | None:intergenic |
| GAGCAAAAGGAGGAGACTAA+AGG | 0.552658 | 2.3:+9015409 | MS.gene028807:CDS |
| CAAAGCCAGACCCAATCGAA+TGG | 0.557939 | 2.3:-9016723 | None:intergenic |
| GAAAGGAATTTGCTGTCTGT+TGG | 0.574692 | 2.3:+9015331 | MS.gene028807:CDS |
| GAAATGATGTGAATGCGAAA+CGG | 0.574811 | 2.3:+9015431 | MS.gene028807:CDS |
| TGGAACTGACTGTTGAAGAA+AGG | 0.579381 | 2.3:+9015314 | MS.gene028807:CDS |
| TGGTGGAGGCGACGATGCAG+AGG | 0.580215 | 2.3:+9017483 | MS.gene028807:CDS |
| ACCCAATCGAATGGGATGAG+TGG | 0.580587 | 2.3:-9016714 | None:intergenic |
| TTGGTGCTCGCAGAGCCTCA+TGG | 0.582624 | 2.3:+9015368 | MS.gene028807:CDS |
| AATCGAATGGGATGAGTGGG+GGG | 0.585658 | 2.3:-9016710 | None:intergenic |
| ATTGATCATGCAACTTCTCA+GGG | 0.603706 | 2.3:+9016964 | MS.gene028807:CDS |
| CCAATCGAATGGGATGAGTG+GGG | 0.618524 | 2.3:-9016712 | None:intergenic |
| TCAGTCAATGAAAGCATATG+AGG | 0.622769 | 2.3:+9015747 | MS.gene028807:CDS |
| GTCTTCCATTGAGCAAAAGG+AGG | 0.626094 | 2.3:+9015399 | MS.gene028807:CDS |
| TGCCAGACTTAAATTCCGCA+AGG | 0.629305 | 2.3:-9015702 | None:intergenic |
| AGATTATTATCGTTACCTTG+CGG | 0.641586 | 2.3:+9015687 | MS.gene028807:CDS |
| GATTCACCAGCTGTAGCCGA+AGG | 0.651447 | 2.3:-9015538 | None:intergenic |
| GAATGTTGCGAACCTAGATG+TGG | 0.666486 | 2.3:+9015294 | MS.gene028807:CDS |
| GATTAAGGAGTATAGAAACA+AGG | 0.677872 | 2.3:+9015453 | MS.gene028807:CDS |
| GAACAAGCTGAACGTTACGA+AGG | 0.678687 | 2.3:+9014850 | MS.gene028807:CDS |
| TCTGACATCCCAGAAGATGG+AGG | 0.682653 | 2.3:+9017007 | MS.gene028807:CDS |
| GTCTGGCAATGAGAAGAAGG+AGG | 0.687369 | 2.3:+9015717 | MS.gene028807:CDS |
| GGAAGACAGAATCCTCCATG+AGG | 0.726645 | 2.3:-9015383 | None:intergenic |
| GTGCTCGCAGAGCCTCATGG+AGG | 0.748786 | 2.3:+9015371 | MS.gene028807:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACCATATAAATTTTTTT+AGG | + | chr2.3:9016044-9016063 | MS.gene028807:intron | 10.0% |
| !! | AGTACATAAAAATGAAAATA+TGG | - | chr2.3:9016474-9016493 | None:intergenic | 15.0% |
| !!! | TAGTTTCTTTTATTAAAAAC+AGG | + | chr2.3:9016258-9016277 | MS.gene028807:intron | 15.0% |
| !!! | TATCAATTTTAATCAAAAAC+CGG | - | chr2.3:9016821-9016840 | None:intergenic | 15.0% |
| !! | ATACTAGAAGAAAATTAACA+TGG | - | chr2.3:9016513-9016532 | None:intergenic | 20.0% |
| !! | ATCAGATATATAACAATAGA+CGG | - | chr2.3:9016390-9016409 | None:intergenic | 20.0% |
| !! | GACACCTAAAAAAATTTATA+TGG | - | chr2.3:9016051-9016070 | None:intergenic | 20.0% |
| !!! | ATCAATTTTAATCAAAAACC+GGG | - | chr2.3:9016820-9016839 | None:intergenic | 20.0% |
| !!! | TAAAACAAAGTATTCTGAAT+AGG | - | chr2.3:9016616-9016635 | None:intergenic | 20.0% |
| ! | AAAAGAAACTATAACATGCA+AGG | - | chr2.3:9016249-9016268 | None:intergenic | 25.0% |
| ! | AGATGGAGGTAATTATTAAT+AGG | + | chr2.3:9017021-9017040 | MS.gene028807:intron | 25.0% |
| ! | ATAATGATTGGAATGACTAA+TGG | + | chr2.3:9017235-9017254 | MS.gene028807:intron | 25.0% |
| ! | ATGGTTTACTGTTTCAATTA+GGG | + | chr2.3:9015027-9015046 | MS.gene028807:intron | 25.0% |
| ! | GAAGTTTGCAATTAAATCAT+TGG | + | chr2.3:9016175-9016194 | MS.gene028807:intron | 25.0% |
| ! | TAATTGTAGAATCCAACAAT+GGG | + | chr2.3:9016007-9016026 | MS.gene028807:intron | 25.0% |
| ! | TATGGTTTACTGTTTCAATT+AGG | + | chr2.3:9015026-9015045 | MS.gene028807:intron | 25.0% |
| ! | TTAAAAACAGGATTGATTAC+TGG | + | chr2.3:9016270-9016289 | MS.gene028807:intron | 25.0% |
| ! | TTAATGCTGAACATAAATTG+TGG | + | chr2.3:9017359-9017378 | MS.gene028807:intron | 25.0% |
| ! | TTTACACGTCAAATAATGAT+TGG | + | chr2.3:9017223-9017242 | MS.gene028807:intron | 25.0% |
| !! | ATCAAAGACATGAAATTTTC+AGG | - | chr2.3:9015949-9015968 | None:intergenic | 25.0% |
| !! | ATTGTGGTAGTTATTCTTTT+TGG | + | chr2.3:9017375-9017394 | MS.gene028807:intron | 25.0% |
| !! | CTATTAGCAATTGTTCTAAA+AGG | + | chr2.3:9015874-9015893 | MS.gene028807:intron | 25.0% |
| !! | GTAAAAGCATATAAAGATGA+AGG | - | chr2.3:9017208-9017227 | None:intergenic | 25.0% |
| !! | TTTATATGTTATTTGCACCT+GGG | + | chr2.3:9015799-9015818 | MS.gene028807:intron | 25.0% |
| !!! | AAAATTGATAGTGTGTTTGA+CGG | + | chr2.3:9016831-9016850 | MS.gene028807:intron | 25.0% |
| !!! | AAATTTTTTTAGGTGTCTTG+TGG | + | chr2.3:9016054-9016073 | MS.gene028807:intron | 25.0% |
| !!! | AAGTTCCAAATAACTTGTTT+TGG | - | chr2.3:9016100-9016119 | None:intergenic | 25.0% |
| !!! | CTGATGTGATTAAGTTTTTT+GGG | + | chr2.3:9016405-9016424 | MS.gene028807:intron | 25.0% |
| !!! | GAAATCAAGAAGTTTTAAGT+AGG | - | chr2.3:9016650-9016669 | None:intergenic | 25.0% |
| !!! | TCATGTTTTATTCTCTACTA+TGG | + | chr2.3:9015590-9015609 | MS.gene028807:intron | 25.0% |
| !!! | TCTGATGTGATTAAGTTTTT+TGG | + | chr2.3:9016404-9016423 | MS.gene028807:intron | 25.0% |
| !!! | TTGAATTTGATTTTGTAACC+CGG | + | chr2.3:9016799-9016818 | MS.gene028807:intron | 25.0% |
| AATAATTACCTCCATCTTCT+GGG | - | chr2.3:9017018-9017037 | None:intergenic | 30.0% | |
| AGATTATTATCGTTACCTTG+CGG | + | chr2.3:9015687-9015706 | MS.gene028807:CDS | 30.0% | |
| ATTCAAATCACAAACCTTTC+TGG | - | chr2.3:9016785-9016804 | None:intergenic | 30.0% | |
| ATTGTGAATAAACCCATTGT+TGG | - | chr2.3:9016022-9016041 | None:intergenic | 30.0% | |
| CTAATTGTAGAATCCAACAA+TGG | + | chr2.3:9016006-9016025 | MS.gene028807:intron | 30.0% | |
| GATCAATGTACTATCTTTGT+AGG | - | chr2.3:9016951-9016970 | None:intergenic | 30.0% | |
| GCAATATATGCAGCATAAAA+TGG | - | chr2.3:9016325-9016344 | None:intergenic | 30.0% | |
| GTTGGTTATAAGAATGTGAT+TGG | + | chr2.3:9015349-9015368 | MS.gene028807:CDS | 30.0% | |
| TAATAATTACCTCCATCTTC+TGG | - | chr2.3:9017019-9017038 | None:intergenic | 30.0% | |
| TGAAAATATGGATGAAAGCT+AGG | - | chr2.3:9016462-9016481 | None:intergenic | 30.0% | |
| TGATGAACATCTTATACCTT+CGG | + | chr2.3:9015522-9015541 | MS.gene028807:CDS | 30.0% | |
| TTTGTCAGTGTTAGTGTTTA+TGG | + | chr2.3:9015008-9015027 | MS.gene028807:intron | 30.0% | |
| ! | AAGATGTTTTACAGGAGTAA+GGG | + | chr2.3:9017074-9017093 | MS.gene028807:intron | 30.0% |
| ! | GATTAAGGAGTATAGAAACA+AGG | + | chr2.3:9015453-9015472 | MS.gene028807:CDS | 30.0% |
| ! | GCTCTATTAAGATGTTTTAC+AGG | + | chr2.3:9017066-9017085 | MS.gene028807:intron | 30.0% |
| ! | GTTTATATGTTATTTGCACC+TGG | + | chr2.3:9015798-9015817 | MS.gene028807:intron | 30.0% |
| ! | TAAGATGTTTTACAGGAGTA+AGG | + | chr2.3:9017073-9017092 | MS.gene028807:intron | 30.0% |
| !! | AAATTGATAGTGTGTTTGAC+GGG | + | chr2.3:9016832-9016851 | MS.gene028807:intron | 30.0% |
| !! | TTTTGGTTGTCCTTTTTCTA+TGG | + | chr2.3:9017392-9017411 | MS.gene028807:intron | 30.0% |
| !!! | TTTTTTTTTGCTGACAGAGA+TGG | + | chr2.3:9015258-9015277 | MS.gene028807:intron | 30.0% |
| ACAGGATTGATTACTGGAAT+TGG | + | chr2.3:9016276-9016295 | MS.gene028807:intron | 35.0% | |
| AGAAACTATAACATGCAAGG+TGG | - | chr2.3:9016246-9016265 | None:intergenic | 35.0% | |
| AGATCTTGAATTCACCAGAA+AGG | + | chr2.3:9016768-9016787 | MS.gene028807:CDS | 35.0% | |
| AGCAGGAAGTCAGAAAAATT+CGG | - | chr2.3:9017425-9017444 | None:intergenic | 35.0% | |
| AGCATTAAATCTCACTGTCT+AGG | - | chr2.3:9017347-9017366 | None:intergenic | 35.0% | |
| ATATGGATGAAAGCTAGGAA+AGG | - | chr2.3:9016457-9016476 | None:intergenic | 35.0% | |
| ATTGATCATGCAACTTCTCA+GGG | + | chr2.3:9016964-9016983 | MS.gene028807:CDS | 35.0% | |
| CGGTAAACATCCATAGAAAA+AGG | - | chr2.3:9017405-9017424 | None:intergenic | 35.0% | |
| GAAATGATGTGAATGCGAAA+CGG | + | chr2.3:9015431-9015450 | MS.gene028807:CDS | 35.0% | |
| GCACATGTTGGATAATTTGA+GGG | - | chr2.3:9017150-9017169 | None:intergenic | 35.0% | |
| GTAAACACAAAGTCGTCAAA+TGG | - | chr2.3:9016136-9016155 | None:intergenic | 35.0% | |
| GTCTAGGTGACTTCATATAT+AGG | - | chr2.3:9017331-9017350 | None:intergenic | 35.0% | |
| TGCACATGTTGGATAATTTG+AGG | - | chr2.3:9017151-9017170 | None:intergenic | 35.0% | |
| TGCAGCCAAAACAAGTTATT+TGG | + | chr2.3:9016092-9016111 | MS.gene028807:intron | 35.0% | |
| TTGAAAGAGCTGTTAGTCAT+AGG | + | chr2.3:9016585-9016604 | MS.gene028807:intron | 35.0% | |
| ! | TCAGTCAATGAAAGCATATG+AGG | + | chr2.3:9015747-9015766 | MS.gene028807:CDS | 35.0% |
| !! | AATTGATAGTGTGTTTGACG+GGG | + | chr2.3:9016833-9016852 | MS.gene028807:intron | 35.0% |
| !!! | GTTTTGCACAAGTTGATTGT+GGG | + | chr2.3:9015635-9015654 | MS.gene028807:intron | 35.0% |
| !!! | TGTTTTGCACAAGTTGATTG+TGG | + | chr2.3:9015634-9015653 | MS.gene028807:intron | 35.0% |
| AAAGGGAAAAACAATGCAGC+AGG | - | chr2.3:9016210-9016229 | None:intergenic | 40.0% | |
| ACCATCAATACATGGTACAG+AGG | - | chr2.3:9016363-9016382 | None:intergenic | 40.0% | |
| ACGGAAGAACCATCAATACA+TGG | - | chr2.3:9016371-9016390 | None:intergenic | 40.0% | |
| CATTGATCATGCAACTTCTC+AGG | + | chr2.3:9016963-9016982 | MS.gene028807:CDS | 40.0% | |
| GAAGAGAACCAGAAAGCAAA+TGG | + | chr2.3:9017448-9017467 | MS.gene028807:intron | 40.0% | |
| GATTCCGTAGGATATCGTAA+GGG | + | chr2.3:9017096-9017115 | MS.gene028807:intron | 40.0% | |
| GGTGAGTAGTTCTTCAAACT+TGG | + | chr2.3:9017504-9017523 | MS.gene028807:intron | 40.0% | |
| TAAGTCTGGCAATGAGAAGA+AGG | + | chr2.3:9015714-9015733 | MS.gene028807:CDS | 40.0% | |
| TACCTTGCGGAATTTAAGTC+TGG | + | chr2.3:9015700-9015719 | MS.gene028807:CDS | 40.0% | |
| TATGCAGCATAAAATGGCTG+AGG | - | chr2.3:9016319-9016338 | None:intergenic | 40.0% | |
| TCCTCTGTACCATGTATTGA+TGG | + | chr2.3:9016359-9016378 | MS.gene028807:intron | 40.0% | |
| TCTGTCTTCCATTGAGCAAA+AGG | + | chr2.3:9015396-9015415 | MS.gene028807:CDS | 40.0% | |
| TGATTGGAATGACTAATGGC+TGG | + | chr2.3:9017239-9017258 | MS.gene028807:intron | 40.0% | |
| TGGAACTGACTGTTGAAGAA+AGG | + | chr2.3:9015314-9015333 | MS.gene028807:CDS | 40.0% | |
| TGTTTGAATGTTCTGCTTGC+AGG | + | chr2.3:9015659-9015678 | MS.gene028807:intron | 40.0% | |
| TTCTTTGCACTTGCACATGT+TGG | - | chr2.3:9017162-9017181 | None:intergenic | 40.0% | |
| TTTGTAGGACTCCTCATTCA+AGG | - | chr2.3:9016936-9016955 | None:intergenic | 40.0% | |
| ! | GAAGTTTTCACGATCCTTAG+AGG | - | chr2.3:9014809-9014828 | None:intergenic | 40.0% |
| !! | ATTGATAGTGTGTTTGACGG+GGG | + | chr2.3:9016834-9016853 | MS.gene028807:intron | 40.0% |
| !! | GAAAGGAATTTGCTGTCTGT+TGG | + | chr2.3:9015331-9015350 | MS.gene028807:CDS | 40.0% |
| !! | TGTGAATGCGAAACGGATTA+AGG | + | chr2.3:9015438-9015457 | MS.gene028807:CDS | 40.0% |
| !!! | TTTTTTGCTGACAGAGATGG+TGG | + | chr2.3:9015261-9015280 | MS.gene028807:intron | 40.0% |
| AAAGCCAGACCCAATCGAAT+GGG | - | chr2.3:9016725-9016744 | None:intergenic | 45.0% | |
| AACATGCAAGGTGGCAAACA+GGG | - | chr2.3:9016237-9016256 | None:intergenic | 45.0% | |
| ACTTCTGACATCCCAGAAGA+TGG | + | chr2.3:9017004-9017023 | MS.gene028807:CDS | 45.0% | |
| CAAAAGCCTGCTTTGCAAGA+TGG | - | chr2.3:9016889-9016908 | None:intergenic | 45.0% | |
| CAACAGTCAGTTCCACATCT+AGG | - | chr2.3:9015309-9015328 | None:intergenic | 45.0% | |
| CTAGCCCTTACGATATCCTA+CGG | - | chr2.3:9017103-9017122 | None:intergenic | 45.0% | |
| GAACAAGCTGAACGTTACGA+AGG | + | chr2.3:9014850-9014869 | MS.gene028807:CDS | 45.0% | |
| GAATGTTCTGCTTGCAGGAA+AGG | + | chr2.3:9015664-9015683 | MS.gene028807:intron | 45.0% | |
| GAATGTTGCGAACCTAGATG+TGG | + | chr2.3:9015294-9015313 | MS.gene028807:CDS | 45.0% | |
| GAGCAAAAGGAGGAGACTAA+AGG | + | chr2.3:9015409-9015428 | MS.gene028807:CDS | 45.0% | |
| GGATTCCGTAGGATATCGTA+AGG | + | chr2.3:9017095-9017114 | MS.gene028807:intron | 45.0% | |
| GGCTAGCAGTCATTTACAGT+TGG | + | chr2.3:9017117-9017136 | MS.gene028807:intron | 45.0% | |
| GTCTTCCATTGAGCAAAAGG+AGG | + | chr2.3:9015399-9015418 | MS.gene028807:CDS | 45.0% | |
| GTGGCAAACAGGGGATAAAA+GGG | - | chr2.3:9016227-9016246 | None:intergenic | 45.0% | |
| TAACATGCAAGGTGGCAAAC+AGG | - | chr2.3:9016238-9016257 | None:intergenic | 45.0% | |
| TGCCAGACTTAAATTCCGCA+AGG | - | chr2.3:9015705-9015724 | None:intergenic | 45.0% | |
| ! | AGTCTCCTCCTTTTGCTCAA+TGG | - | chr2.3:9015407-9015426 | None:intergenic | 45.0% |
| !! | TTCTGGTTCTCTTCTGTAGC+AGG | - | chr2.3:9017442-9017461 | None:intergenic | 45.0% |
| AATCGAATGGGATGAGTGGG+GGG | - | chr2.3:9016713-9016732 | None:intergenic | 50.0% | |
| ACAGGAGTAAGGGATTCCGT+AGG | + | chr2.3:9017084-9017103 | MS.gene028807:intron | 50.0% | |
| ACATGCAAGGTGGCAAACAG+GGG | - | chr2.3:9016236-9016255 | None:intergenic | 50.0% | |
| ACCCAATCGAATGGGATGAG+TGG | - | chr2.3:9016717-9016736 | None:intergenic | 50.0% | |
| AGAGCTCGACACCTTGAATG+AGG | + | chr2.3:9016922-9016941 | MS.gene028807:CDS | 50.0% | |
| ATCACCCATGAGATCTACCC+AGG | - | chr2.3:9015819-9015838 | None:intergenic | 50.0% | |
| CAAAGCCAGACCCAATCGAA+TGG | - | chr2.3:9016726-9016745 | None:intergenic | 50.0% | |
| CAATCGAATGGGATGAGTGG+GGG | - | chr2.3:9016714-9016733 | None:intergenic | 50.0% | |
| CCAATCGAATGGGATGAGTG+GGG | - | chr2.3:9016715-9016734 | None:intergenic | 50.0% | |
| CCCAATCGAATGGGATGAGT+GGG | - | chr2.3:9016716-9016735 | None:intergenic | 50.0% | |
| CCCACTCATCCCATTCGATT+GGG | + | chr2.3:9016713-9016732 | MS.gene028807:CDS | 50.0% | |
| CTTATACCTTCGGCTACAGC+TGG | + | chr2.3:9015532-9015551 | MS.gene028807:CDS | 50.0% | |
| GGAAGACAGAATCCTCCATG+AGG | - | chr2.3:9015386-9015405 | None:intergenic | 50.0% | |
| GGAATGACTAATGGCTGGTG+TGG | + | chr2.3:9017244-9017263 | MS.gene028807:intron | 50.0% | |
| GGTGGCAAACAGGGGATAAA+AGG | - | chr2.3:9016228-9016247 | None:intergenic | 50.0% | |
| GTCTGGCAATGAGAAGAAGG+AGG | + | chr2.3:9015717-9015736 | MS.gene028807:CDS | 50.0% | |
| TAATTCAGCCTCTGCTGCAG+TGG | - | chr2.3:9016690-9016709 | None:intergenic | 50.0% | |
| TCATCCCATTCGATTGGGTC+TGG | + | chr2.3:9016718-9016737 | MS.gene028807:CDS | 50.0% | |
| TCTGACATCCCAGAAGATGG+AGG | + | chr2.3:9017007-9017026 | MS.gene028807:CDS | 50.0% | |
| TGCACCTGGGTAGATCTCAT+GGG | + | chr2.3:9015812-9015831 | MS.gene028807:intron | 50.0% | |
| TGTCAGAAGTCCAGAGAGTC+AGG | - | chr2.3:9016994-9017013 | None:intergenic | 50.0% | |
| TTGCACCTGGGTAGATCTCA+TGG | + | chr2.3:9015811-9015830 | MS.gene028807:intron | 50.0% | |
| ! | TTCAGCTTGTTCAGCGAGCT+TGG | - | chr2.3:9014842-9014861 | None:intergenic | 50.0% |
| !! | AGATGGCAGGCTCTGGAAAA+AGG | - | chr2.3:9016872-9016891 | None:intergenic | 50.0% |
| !! | TGGCAGTGCCATTTGCTTTC+TGG | - | chr2.3:9017459-9017478 | None:intergenic | 50.0% |
| AATGGCACTGCCAAGCTTGG+TGG | + | chr2.3:9017466-9017485 | MS.gene028807:CDS | 55.0% | |
| AGCCTGCCATCTTGCAAAGC+AGG | + | chr2.3:9016880-9016899 | MS.gene028807:CDS | 55.0% | |
| AGCCTGCTTTGCAAGATGGC+AGG | - | chr2.3:9016885-9016904 | None:intergenic | 55.0% | |
| CCCCACTCATCCCATTCGAT+TGG | + | chr2.3:9016712-9016731 | MS.gene028807:CDS | 55.0% | |
| CTTTGCAAGATGGCAGGCTC+TGG | - | chr2.3:9016879-9016898 | None:intergenic | 55.0% | |
| GATTCACCAGCTGTAGCCGA+AGG | - | chr2.3:9015541-9015560 | None:intergenic | 55.0% | |
| GCAAATGGCACTGCCAAGCT+TGG | + | chr2.3:9017463-9017482 | MS.gene028807:CDS | 55.0% | |
| GGCAATGAGAAGAAGGAGGC+TGG | + | chr2.3:9015721-9015740 | MS.gene028807:CDS | 55.0% | |
| TCAGGGACAACCTGACTCTC+TGG | + | chr2.3:9016981-9017000 | MS.gene028807:CDS | 55.0% | |
| ATCGTCGCCTCCACCAAGCT+TGG | - | chr2.3:9017479-9017498 | None:intergenic | 60.0% | |
| GTCTGCTACCACTGCAGCAG+AGG | + | chr2.3:9016679-9016698 | MS.gene028807:intron | 60.0% | |
| ! | TTGGTGCTCGCAGAGCCTCA+TGG | + | chr2.3:9015368-9015387 | MS.gene028807:CDS | 60.0% |
| GTGCTCGCAGAGCCTCATGG+AGG | + | chr2.3:9015371-9015390 | MS.gene028807:CDS | 65.0% | |
| TGGTGGAGGCGACGATGCAG+AGG | + | chr2.3:9017483-9017502 | MS.gene028807:CDS | 65.0% | |
| ! | GGCACTGCCAAGCTTGGTGG+AGG | + | chr2.3:9017469-9017488 | MS.gene028807:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 9014799 | 9017593 | 9014799 | ID=MS.gene028807 |
| chr2.3 | mRNA | 9014799 | 9017593 | 9014799 | ID=MS.gene028807.t1;Parent=MS.gene028807 |
| chr2.3 | exon | 9014799 | 9014871 | 9014799 | ID=MS.gene028807.t1.exon1;Parent=MS.gene028807.t1 |
| chr2.3 | CDS | 9014799 | 9014871 | 9014799 | ID=cds.MS.gene028807.t1;Parent=MS.gene028807.t1 |
| chr2.3 | exon | 9015275 | 9015581 | 9015275 | ID=MS.gene028807.t1.exon2;Parent=MS.gene028807.t1 |
| chr2.3 | CDS | 9015275 | 9015581 | 9015275 | ID=cds.MS.gene028807.t1;Parent=MS.gene028807.t1 |
| chr2.3 | exon | 9015681 | 9015768 | 9015681 | ID=MS.gene028807.t1.exon3;Parent=MS.gene028807.t1 |
| chr2.3 | CDS | 9015681 | 9015768 | 9015681 | ID=cds.MS.gene028807.t1;Parent=MS.gene028807.t1 |
| chr2.3 | exon | 9016680 | 9016789 | 9016680 | ID=MS.gene028807.t1.exon4;Parent=MS.gene028807.t1 |
| chr2.3 | CDS | 9016680 | 9016789 | 9016680 | ID=cds.MS.gene028807.t1;Parent=MS.gene028807.t1 |
| chr2.3 | exon | 9016880 | 9017028 | 9016880 | ID=MS.gene028807.t1.exon5;Parent=MS.gene028807.t1 |
| chr2.3 | CDS | 9016880 | 9017028 | 9016880 | ID=cds.MS.gene028807.t1;Parent=MS.gene028807.t1 |
| chr2.3 | exon | 9017449 | 9017504 | 9017449 | ID=MS.gene028807.t1.exon6;Parent=MS.gene028807.t1 |
| chr2.3 | CDS | 9017449 | 9017504 | 9017449 | ID=cds.MS.gene028807.t1;Parent=MS.gene028807.t1 |
| chr2.3 | exon | 9017591 | 9017593 | 9017591 | ID=MS.gene028807.t1.exon7;Parent=MS.gene028807.t1 |
| chr2.3 | CDS | 9017591 | 9017593 | 9017591 | ID=cds.MS.gene028807.t1;Parent=MS.gene028807.t1 |
| Gene Sequence |
| Protein sequence |
