Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38593.t1 | XP_003602823.2 | 100 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 1.50E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38593.t1 | P46266 | 96.9 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 2.4e-136 | 486.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38593.t1 | G7J3X9 | 100.0 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 1.1e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051208 | MS.gene38593 | -0.818791 | 1.63E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene38593 | -0.838615 | 2.59E-57 | -1.69E-46 |
| MS.gene052011 | MS.gene38593 | 0.845452 | 4.03E-59 | -1.69E-46 |
| MS.gene054719 | MS.gene38593 | -0.813806 | 2.12E-51 | -1.69E-46 |
| MS.gene055217 | MS.gene38593 | -0.813642 | 2.31E-51 | -1.69E-46 |
| MS.gene055488 | MS.gene38593 | 0.93072 | 1.09E-93 | -1.69E-46 |
| MS.gene059683 | MS.gene38593 | -0.816432 | 5.55E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene38593 | 0.816056 | 6.73E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38593 | MS.gene010179 | PPI |
| MS.gene013133 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene052176 | PPI |
| MS.gene38593 | MS.gene054662 | PPI |
| MS.gene050079 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene028807 | PPI |
| MS.gene48435 | MS.gene38593 | PPI |
| MS.gene55400 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene86409 | PPI |
| MS.gene055488 | MS.gene38593 | PPI |
| MS.gene020411 | MS.gene38593 | PPI |
| MS.gene71392 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene31370 | PPI |
| MS.gene006850 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene83541 | PPI |
| MS.gene035837 | MS.gene38593 | PPI |
| MS.gene066779 | MS.gene38593 | PPI |
| MS.gene013047 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene047668 | PPI |
| MS.gene38593 | MS.gene64150 | PPI |
| MS.gene010180 | MS.gene38593 | PPI |
| MS.gene043514 | MS.gene38593 | PPI |
| MS.gene54847 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene043907 | PPI |
| MS.gene38593 | MS.gene010393 | PPI |
| MS.gene56475 | MS.gene38593 | PPI |
| MS.gene55401 | MS.gene38593 | PPI |
| MS.gene041125 | MS.gene38593 | PPI |
| MS.gene010179 | MS.gene38593 | PPI |
| MS.gene067412 | MS.gene38593 | PPI |
| MS.gene38593 | MS.gene53188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38593.t1 | MTR_3g099380 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| MS.gene38593.t1 | MTR_5g064580 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 4.87e-177 | 488 |
| MS.gene38593.t1 | MTR_3g099380 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 6.31e-150 | 417 |
| MS.gene38593.t1 | MTR_3g100620 | 76.793 | 237 | 54 | 1 | 8 | 243 | 11 | 247 | 1.50e-135 | 382 |
| MS.gene38593.t1 | MTR_2g091225 | 72.840 | 243 | 64 | 2 | 3 | 245 | 2 | 242 | 7.14e-129 | 365 |
| MS.gene38593.t1 | MTR_4g083060 | 70.518 | 251 | 72 | 2 | 8 | 258 | 7 | 255 | 1.48e-126 | 361 |
| MS.gene38593.t1 | MTR_5g044160 | 71.951 | 246 | 67 | 2 | 3 | 248 | 2 | 245 | 1.62e-126 | 360 |
| MS.gene38593.t1 | MTR_8g086270 | 71.371 | 248 | 69 | 2 | 3 | 250 | 2 | 247 | 1.63e-125 | 357 |
| MS.gene38593.t1 | MTR_2g015980 | 69.444 | 252 | 73 | 3 | 6 | 256 | 3 | 251 | 4.17e-124 | 353 |
| MS.gene38593.t1 | MTR_2g076960 | 66.275 | 255 | 84 | 1 | 1 | 255 | 1 | 253 | 8.05e-122 | 348 |
| MS.gene38593.t1 | MTR_2g091225 | 72.727 | 220 | 58 | 2 | 26 | 245 | 2 | 219 | 2.99e-117 | 335 |
| MS.gene38593.t1 | MTR_0137s0020 | 59.244 | 238 | 91 | 4 | 8 | 243 | 11 | 244 | 6.46e-91 | 269 |
| MS.gene38593.t1 | MTR_3g014060 | 58.824 | 238 | 92 | 4 | 8 | 243 | 11 | 244 | 5.08e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38593.t1 | AT1G78300 | 91.797 | 256 | 20 | 1 | 6 | 260 | 3 | 258 | 6.41e-173 | 477 |
| MS.gene38593.t1 | AT1G35160 | 87.259 | 259 | 32 | 1 | 3 | 260 | 6 | 264 | 1.61e-167 | 464 |
| MS.gene38593.t1 | AT4G09000 | 86.260 | 262 | 32 | 1 | 3 | 260 | 5 | 266 | 1.57e-164 | 456 |
| MS.gene38593.t1 | AT1G35160 | 78.746 | 287 | 32 | 2 | 3 | 260 | 6 | 292 | 2.11e-161 | 449 |
| MS.gene38593.t1 | AT5G38480 | 86.111 | 252 | 34 | 1 | 6 | 257 | 2 | 252 | 1.13e-160 | 446 |
| MS.gene38593.t1 | AT3G02520 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.61e-159 | 441 |
| MS.gene38593.t1 | AT3G02520 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.61e-159 | 441 |
| MS.gene38593.t1 | AT5G38480 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.41e-158 | 440 |
| MS.gene38593.t1 | AT5G38480 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.41e-158 | 440 |
| MS.gene38593.t1 | AT4G09000 | 88.750 | 240 | 27 | 0 | 3 | 242 | 5 | 244 | 3.67e-158 | 442 |
| MS.gene38593.t1 | AT5G16050 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.38e-150 | 419 |
| MS.gene38593.t1 | AT5G16050 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.38e-150 | 419 |
| MS.gene38593.t1 | AT5G10450 | 78.776 | 245 | 51 | 1 | 3 | 246 | 2 | 246 | 4.34e-143 | 401 |
| MS.gene38593.t1 | AT5G10450 | 76.800 | 250 | 57 | 1 | 3 | 251 | 2 | 251 | 1.20e-142 | 401 |
| MS.gene38593.t1 | AT5G10450 | 78.926 | 242 | 50 | 1 | 3 | 243 | 2 | 243 | 1.51e-142 | 400 |
| MS.gene38593.t1 | AT5G10450 | 79.253 | 241 | 49 | 1 | 3 | 242 | 2 | 242 | 6.29e-142 | 399 |
| MS.gene38593.t1 | AT5G65430 | 79.167 | 240 | 49 | 1 | 8 | 246 | 7 | 246 | 6.64e-141 | 395 |
| MS.gene38593.t1 | AT5G65430 | 79.325 | 237 | 48 | 1 | 8 | 243 | 7 | 243 | 1.68e-140 | 395 |
| MS.gene38593.t1 | AT5G65430 | 79.661 | 236 | 47 | 1 | 8 | 242 | 7 | 242 | 5.97e-140 | 394 |
| MS.gene38593.t1 | AT1G26480 | 72.222 | 252 | 67 | 2 | 8 | 258 | 10 | 259 | 1.16e-129 | 368 |
| MS.gene38593.t1 | AT1G34760 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 3.38e-122 | 348 |
| MS.gene38593.t1 | AT1G34760 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 4.82e-122 | 348 |
| MS.gene38593.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.26e-121 | 347 |
| MS.gene38593.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.30e-121 | 348 |
| MS.gene38593.t1 | AT2G42590 | 69.200 | 250 | 74 | 2 | 8 | 256 | 7 | 254 | 3.98e-121 | 346 |
| MS.gene38593.t1 | AT1G22300 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 5.38e-116 | 333 |
| MS.gene38593.t1 | AT1G22300 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 6.55e-116 | 333 |
| MS.gene38593.t1 | AT1G22300 | 69.038 | 239 | 72 | 2 | 8 | 246 | 5 | 241 | 1.08e-114 | 329 |
| MS.gene38593.t1 | AT1G78220 | 48.069 | 233 | 118 | 2 | 8 | 239 | 5 | 235 | 1.19e-70 | 217 |
| MS.gene38593.t1 | AT1G22290 | 45.238 | 210 | 93 | 5 | 11 | 217 | 8 | 198 | 9.56e-48 | 158 |
| MS.gene38593.t1 | AT1G22290 | 44.928 | 207 | 92 | 5 | 11 | 214 | 8 | 195 | 1.92e-47 | 156 |
| MS.gene38593.t1 | AT2G10450 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 4.40e-18 | 77.0 |
Find 71 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCAAGACCCAGCCTAAT+TGG | 0.274942 | 3.3:-81785432 | None:intergenic |
| GACGGTGAGTTCTTCGTTAT+CGG | 0.280595 | 3.3:-81784703 | None:intergenic |
| CTCATTCCTTCCGCTGCTTC+CGG | 0.316176 | 3.3:+81784930 | MS.gene38593:CDS |
| TGATGAAGCAATTGCTGAAC+TGG | 0.341177 | 3.3:+81786317 | MS.gene38593:CDS |
| TACTGCTGTTCATCGGGTTT+AGG | 0.348488 | 3.3:-81786557 | None:intergenic |
| CGAAGAAATGGTGGAGTTCA+TGG | 0.350821 | 3.3:+81784662 | MS.gene38593:CDS |
| AACCTGTTTAGCAAGATTGC+AGG | 0.360144 | 3.3:-81785502 | None:intergenic |
| CACCATTTCTTCGTAGCGTT+CGG | 0.376229 | 3.3:-81784652 | None:intergenic |
| TGCTCCGATGACGTTCTTGT+AGG | 0.378815 | 3.3:-81784751 | None:intergenic |
| TTCGTAGCGTTCGGCTTGTT+CGG | 0.387733 | 3.3:-81784643 | None:intergenic |
| TGCCTGCAATCTTGCTAAAC+AGG | 0.391731 | 3.3:+81785500 | MS.gene38593:CDS |
| GGTAATCTCCCTTCATCTTA+AGG | 0.395416 | 3.3:-81784971 | None:intergenic |
| CGCTGCTTCCGGTGATTCCA+AGG | 0.396427 | 3.3:+81784941 | MS.gene38593:CDS |
| TTTGTTTGGTTTCAGGATGA+TGG | 0.406229 | 3.3:+81786509 | MS.gene38593:intron |
| AGCCGAACGCTACGAAGAAA+TGG | 0.413922 | 3.3:+81784650 | MS.gene38593:CDS |
| TTTGTTTACTGCTGTTCATC+GGG | 0.421726 | 3.3:-81786563 | None:intergenic |
| TGCCACCAACTCATCCAATT+AGG | 0.435904 | 3.3:+81785418 | MS.gene38593:CDS |
| GCAAGATTGCAGGCACGATC+AGG | 0.442951 | 3.3:-81785492 | None:intergenic |
| AGCTGCTTCTTTAATTTCAT+CGG | 0.448476 | 3.3:-81786534 | None:intergenic |
| TTCTTCGTTATCGGCGTTGG+CGG | 0.458530 | 3.3:-81784694 | None:intergenic |
| ACCAACTCATCCAATTAGGC+TGG | 0.462152 | 3.3:+81785422 | MS.gene38593:CDS |
| CTCAGCAGCCTCCTTACGCT+CGG | 0.471405 | 3.3:-81785024 | None:intergenic |
| CCTGCATGTCAGAGGTCCAT+AGG | 0.480592 | 3.3:-81786407 | None:intergenic |
| ATTTGTTTACTGCTGTTCAT+CGG | 0.482074 | 3.3:-81786564 | None:intergenic |
| TCGGAGCACGACGTGCTTCG+TGG | 0.495843 | 3.3:+81784766 | MS.gene38593:CDS |
| CCCAGCCTAATTGGATGAGT+TGG | 0.496782 | 3.3:-81785423 | None:intergenic |
| CGCCGCTTACAAATCTGCTC+AGG | 0.501140 | 3.3:+81785055 | MS.gene38593:CDS |
| CATCTTAAGGTAGAAAACCT+TGG | 0.502188 | 3.3:-81784958 | None:intergenic |
| GGCGGCCGCTCATTCACCTC+GGG | 0.502842 | 3.3:+81784593 | MS.gene38593:CDS |
| CAAGACTGGCGCCGAGCGTA+AGG | 0.509038 | 3.3:+81785013 | MS.gene38593:CDS |
| TTCCTCGATCGAACAGAAAG+AGG | 0.515919 | 3.3:+81784797 | MS.gene38593:CDS |
| GAGTTCTTCGTTATCGGCGT+TGG | 0.515957 | 3.3:-81784697 | None:intergenic |
| AGCCTAATTGGATGAGTTGG+TGG | 0.523887 | 3.3:-81785420 | None:intergenic |
| TTCGTGATAATCTCACCCTA+TGG | 0.525895 | 3.3:+81786391 | MS.gene38593:CDS |
| GTAGAAAACCTTGGAATCAC+CGG | 0.533118 | 3.3:-81784949 | None:intergenic |
| CCTATGGACCTCTGACATGC+AGG | 0.534557 | 3.3:+81786407 | MS.gene38593:CDS |
| AGATCGGTAGTCACGGATGA+CGG | 0.545474 | 3.3:-81784847 | None:intergenic |
| CTGCATGTCAGAGGTCCATA+GGG | 0.549120 | 3.3:-81786406 | None:intergenic |
| AGCAGCGGAAGGAATGAGAC+GGG | 0.550202 | 3.3:-81784925 | None:intergenic |
| TGAACTCAGCAAGATACCTA+TGG | 0.552878 | 3.3:-81784992 | None:intergenic |
| CTCCTCTTTCTGTTCGATCG+AGG | 0.555820 | 3.3:-81784799 | None:intergenic |
| AAGAACTCACCGTCGAAGAG+AGG | 0.556409 | 3.3:+81784712 | MS.gene38593:CDS |
| TATCTTGCTGAGTTCAAGAC+TGG | 0.559984 | 3.3:+81784999 | MS.gene38593:CDS |
| CTACCGATCTAAGATCGAAT+CGG | 0.562157 | 3.3:+81784860 | MS.gene38593:CDS |
| CCTTGGCGAGGAATCATACA+AGG | 0.572604 | 3.3:+81786344 | MS.gene38593:CDS |
| TCGGGAAGAGAACGTTTACA+TGG | 0.578574 | 3.3:+81784611 | MS.gene38593:CDS |
| GTAGCCTACAAGAACGTCAT+CGG | 0.580177 | 3.3:+81784747 | MS.gene38593:CDS |
| ATTGCTGAACTGGATACCCT+TGG | 0.584167 | 3.3:+81786327 | MS.gene38593:CDS |
| CTTGTATGATTCCTCGCCAA+GGG | 0.586259 | 3.3:-81786343 | None:intergenic |
| CCAACTCATCCAATTAGGCT+GGG | 0.587390 | 3.3:+81785423 | MS.gene38593:CDS |
| TGGCGGCCGCTCATTCACCT+CGG | 0.588265 | 3.3:+81784592 | MS.gene38593:CDS |
| CTTGGAATCACCGGAAGCAG+CGG | 0.589029 | 3.3:-81784940 | None:intergenic |
| AAGCAGCGGAAGGAATGAGA+CGG | 0.594104 | 3.3:-81784926 | None:intergenic |
| GACTGGCGCCGAGCGTAAGG+AGG | 0.597871 | 3.3:+81785016 | MS.gene38593:CDS |
| CCTTGTATGATTCCTCGCCA+AGG | 0.605796 | 3.3:-81786344 | None:intergenic |
| AAACGTGATCCTCGTTGCCG+CGG | 0.607870 | 3.3:-81784824 | None:intergenic |
| AGATGAAGGGAGATTACCAT+AGG | 0.607967 | 3.3:+81784976 | MS.gene38593:CDS |
| GAGAAGGTTCCTCTCTTCGA+CGG | 0.608781 | 3.3:-81784721 | None:intergenic |
| TCTTGTAGGCTACAGAGAGA+AGG | 0.628236 | 3.3:-81784737 | None:intergenic |
| GAATCACCGGAAGCAGCGGA+AGG | 0.629660 | 3.3:-81784936 | None:intergenic |
| AATCAATACCTGCATGTCAG+AGG | 0.637050 | 3.3:-81786415 | None:intergenic |
| ATGTAAACGTTCTCTTCCCG+AGG | 0.637688 | 3.3:-81784609 | None:intergenic |
| GCTCCGATTCGATCTTAGAT+CGG | 0.641337 | 3.3:-81784863 | None:intergenic |
| CGATCTTAGATCGGTAGTCA+CGG | 0.645752 | 3.3:-81784854 | None:intergenic |
| CTCTTCCCGAGGTGAATGAG+CGG | 0.645933 | 3.3:-81784598 | None:intergenic |
| AGAGGAGAGCCGCGGCAACG+AGG | 0.653525 | 3.3:+81784815 | MS.gene38593:CDS |
| GAGCTTTCTAACATCTGTGA+CGG | 0.658608 | 3.3:+81784882 | MS.gene38593:CDS |
| GAACAGAAAGAGGAGAGCCG+CGG | 0.660532 | 3.3:+81784807 | MS.gene38593:CDS |
| AACCTGAGCAGATTTGTAAG+CGG | 0.663795 | 3.3:-81785057 | None:intergenic |
| TGAACTGGATACCCTTGGCG+AGG | 0.679766 | 3.3:+81786332 | MS.gene38593:CDS |
| CGAACGCTACGAAGAAATGG+TGG | 0.680192 | 3.3:+81784653 | MS.gene38593:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAGAAAACAAAAATATAT+GGG | - | chr3.3:81786464-81786483 | None:intergenic | 15.0% |
| !! | CATTTCAAAATGAAATTTAA+AGG | - | chr3.3:81786185-81786204 | None:intergenic | 15.0% |
| !! | TACTTTGTATATGAAATATA+TGG | + | chr3.3:81785314-81785333 | MS.gene38593:intron | 15.0% |
| !!! | GTTATTTTGTAGTTATTTTA+AGG | + | chr3.3:81785563-81785582 | MS.gene38593:intron | 15.0% |
| !! | AAACAACAAAAAGGAAAAAA+CGG | - | chr3.3:81785085-81785104 | None:intergenic | 20.0% |
| !! | AATAAGATGTATATCCAAAA+AGG | - | chr3.3:81785589-81785608 | None:intergenic | 20.0% |
| !! | AATAATAAGGATACCAAAAA+AGG | - | chr3.3:81785967-81785986 | None:intergenic | 20.0% |
| !! | ATTTAAAGGAATAAATTCCA+TGG | - | chr3.3:81786171-81786190 | None:intergenic | 20.0% |
| !! | GAGAAGAAAACAAAAATATA+TGG | - | chr3.3:81786465-81786484 | None:intergenic | 20.0% |
| !! | TTTAAAGGAATAAATTCCAT+GGG | - | chr3.3:81786170-81786189 | None:intergenic | 20.0% |
| !!! | CTCATGAATATTTTTTTGTT+TGG | + | chr3.3:81786279-81786298 | MS.gene38593:intron | 20.0% |
| !!! | TTTAATCAATGTATTGATCT+TGG | + | chr3.3:81786486-81786505 | MS.gene38593:intron | 20.0% |
| ! | CAAAATCGAAAACAACAAAA+AGG | - | chr3.3:81785094-81785113 | None:intergenic | 25.0% |
| ! | TTAAAGGAATAAATTCCATG+GGG | - | chr3.3:81786169-81786188 | None:intergenic | 25.0% |
| ! | TTGGATATTTGTGTAGAAAT+TGG | + | chr3.3:81785802-81785821 | MS.gene38593:intron | 25.0% |
| !! | AATACTTGACAACTCATTTT+AGG | - | chr3.3:81786006-81786025 | None:intergenic | 25.0% |
| !! | AGTAGTACCTAATGTTATTT+GGG | - | chr3.3:81786138-81786157 | None:intergenic | 25.0% |
| !! | AGTTGTCAAGTATTGTTTAT+TGG | + | chr3.3:81786012-81786031 | MS.gene38593:intron | 25.0% |
| !! | CTGAAAACATTTTATGAACA+TGG | + | chr3.3:81785699-81785718 | MS.gene38593:intron | 25.0% |
| !! | GCAATATTTTTCACAATCTT+TGG | + | chr3.3:81785276-81785295 | MS.gene38593:intron | 25.0% |
| !! | TGAAATATATGGAGTATTTG+TGG | + | chr3.3:81785325-81785344 | MS.gene38593:intron | 25.0% |
| !! | TTTTGTGATTCAAATCTGTT+AGG | + | chr3.3:81785109-81785128 | MS.gene38593:intron | 25.0% |
| !!! | ATGAGTTTTTTCTGTTCTAA+TGG | + | chr3.3:81786240-81786259 | MS.gene38593:intron | 25.0% |
| !!! | TAGTTATTTTAAGGCCTTTT+TGG | + | chr3.3:81785572-81785591 | MS.gene38593:intron | 25.0% |
| !!! | TTTTTTGTTTGGTAATCACT+AGG | + | chr3.3:81786290-81786309 | MS.gene38593:intron | 25.0% |
| AACTCTGATCAAATAGTGTA+AGG | - | chr3.3:81785782-81785801 | None:intergenic | 30.0% | |
| AATAAGGATACCAAAAAAGG+AGG | - | chr3.3:81785964-81785983 | None:intergenic | 30.0% | |
| ACTCTGATCAAATAGTGTAA+GGG | - | chr3.3:81785781-81785800 | None:intergenic | 30.0% | |
| CTTATTTCCATTACTTCTAC+AGG | - | chr3.3:81785679-81785698 | None:intergenic | 30.0% | |
| GAGTAGTACCTAATGTTATT+TGG | - | chr3.3:81786139-81786158 | None:intergenic | 30.0% | |
| TGTAATTGAAAGGTTTGTGA+TGG | + | chr3.3:81785351-81785370 | MS.gene38593:intron | 30.0% | |
| TTTGTGGATCTGTAATTGAA+AGG | + | chr3.3:81785341-81785360 | MS.gene38593:intron | 30.0% | |
| ! | ACACTATTTGATCAGAGTTT+TGG | + | chr3.3:81785783-81785802 | MS.gene38593:intron | 30.0% |
| ! | AGCTGCTTCTTTAATTTCAT+CGG | - | chr3.3:81786537-81786556 | None:intergenic | 30.0% |
| ! | GTTTTCTACCTTAAGATGAA+GGG | + | chr3.3:81784963-81784982 | MS.gene38593:CDS | 30.0% |
| ! | TGTCAAGTATTGTTTATTGG+TGG | + | chr3.3:81786015-81786034 | MS.gene38593:intron | 30.0% |
| !! | TGTATTGATCTTGGTTTGTT+TGG | + | chr3.3:81786495-81786514 | MS.gene38593:intron | 30.0% |
| !!! | AATGTGTTCCTTTGTTTTAC+AGG | + | chr3.3:81785377-81785396 | MS.gene38593:intron | 30.0% |
| AAAATAATAGATTCCACCGC+TGG | - | chr3.3:81785832-81785851 | None:intergenic | 35.0% | |
| AAATAATAGATTCCACCGCT+GGG | - | chr3.3:81785831-81785850 | None:intergenic | 35.0% | |
| ACTTCTACAGGAAAACAGTT+TGG | - | chr3.3:81785667-81785686 | None:intergenic | 35.0% | |
| AGGTCAAGTAGGCAATAATA+AGG | - | chr3.3:81785980-81785999 | None:intergenic | 35.0% | |
| CATCTTAAGGTAGAAAACCT+TGG | - | chr3.3:81784961-81784980 | None:intergenic | 35.0% | |
| TGCAATGTCCTGTAAAACAA+AGG | - | chr3.3:81785388-81785407 | None:intergenic | 35.0% | |
| TGGATTCTACTAACCACTTA+TGG | + | chr3.3:81785932-81785951 | MS.gene38593:intron | 35.0% | |
| ! | CTGTTTTCCTGTAGAAGTAA+TGG | + | chr3.3:81785669-81785688 | MS.gene38593:intron | 35.0% |
| ! | GGTTTTCTACCTTAAGATGA+AGG | + | chr3.3:81784962-81784981 | MS.gene38593:CDS | 35.0% |
| ! | TTTGTTTGGTTTCAGGATGA+TGG | + | chr3.3:81786509-81786528 | MS.gene38593:intron | 35.0% |
| !! | ATCTTGGTTTGTTTGGTTTC+AGG | + | chr3.3:81786502-81786521 | MS.gene38593:intron | 35.0% |
| !! | ATTTTAGGTGTAGGTCAAGT+AGG | - | chr3.3:81785991-81786010 | None:intergenic | 35.0% |
| !! | TGACAACTCATTTTAGGTGT+AGG | - | chr3.3:81786000-81786019 | None:intergenic | 35.0% |
| AACCTGAGCAGATTTGTAAG+CGG | - | chr3.3:81785060-81785079 | None:intergenic | 40.0% | |
| AACCTGTTTAGCAAGATTGC+AGG | - | chr3.3:81785505-81785524 | None:intergenic | 40.0% | |
| AATAATAGATTCCACCGCTG+GGG | - | chr3.3:81785830-81785849 | None:intergenic | 40.0% | |
| AATCAATACCTGCATGTCAG+AGG | - | chr3.3:81786418-81786437 | None:intergenic | 40.0% | |
| AGATGAAGGGAGATTACCAT+AGG | + | chr3.3:81784976-81784995 | MS.gene38593:CDS | 40.0% | |
| GAAGTTATGCTCTTGCTACT+AGG | - | chr3.3:81786217-81786236 | None:intergenic | 40.0% | |
| GAGCTTTCTAACATCTGTGA+CGG | + | chr3.3:81784882-81784901 | MS.gene38593:CDS | 40.0% | |
| GGTAATCTCCCTTCATCTTA+AGG | - | chr3.3:81784974-81784993 | None:intergenic | 40.0% | |
| GTAGAAAACCTTGGAATCAC+CGG | - | chr3.3:81784952-81784971 | None:intergenic | 40.0% | |
| TATCTTGCTGAGTTCAAGAC+TGG | + | chr3.3:81784999-81785018 | MS.gene38593:CDS | 40.0% | |
| TGAACTCAGCAAGATACCTA+TGG | - | chr3.3:81784995-81785014 | None:intergenic | 40.0% | |
| TGATGAAGCAATTGCTGAAC+TGG | + | chr3.3:81786317-81786336 | MS.gene38593:CDS | 40.0% | |
| TTCGTGATAATCTCACCCTA+TGG | + | chr3.3:81786391-81786410 | MS.gene38593:CDS | 40.0% | |
| ! | CTACCGATCTAAGATCGAAT+CGG | + | chr3.3:81784860-81784879 | MS.gene38593:CDS | 40.0% |
| ! | GCAACAATGATGTTGCGTTT+TGG | + | chr3.3:81785912-81785931 | MS.gene38593:intron | 40.0% |
| ! | TGTTTATTGGTGGTTAGCTC+AGG | + | chr3.3:81786025-81786044 | MS.gene38593:intron | 40.0% |
| !!! | ATGGATCAGACCTCCTTTTT+TGG | + | chr3.3:81785951-81785970 | MS.gene38593:intron | 40.0% |
| AAGGAGGTCTGATCCATAAG+TGG | - | chr3.3:81785948-81785967 | None:intergenic | 45.0% | |
| ACCAACTCATCCAATTAGGC+TGG | + | chr3.3:81785422-81785441 | MS.gene38593:CDS | 45.0% | |
| ATAATAGATTCCACCGCTGG+GGG | - | chr3.3:81785829-81785848 | None:intergenic | 45.0% | |
| ATGTAAACGTTCTCTTCCCG+AGG | - | chr3.3:81784612-81784631 | None:intergenic | 45.0% | |
| ATTGCTGAACTGGATACCCT+TGG | + | chr3.3:81786327-81786346 | MS.gene38593:CDS | 45.0% | |
| CACCATTTCTTCGTAGCGTT+CGG | - | chr3.3:81784655-81784674 | None:intergenic | 45.0% | |
| CCAACTCATCCAATTAGGCT+GGG | + | chr3.3:81785423-81785442 | MS.gene38593:CDS | 45.0% | |
| CGATCTTAGATCGGTAGTCA+CGG | - | chr3.3:81784857-81784876 | None:intergenic | 45.0% | |
| CTTGTATGATTCCTCGCCAA+GGG | - | chr3.3:81786346-81786365 | None:intergenic | 45.0% | |
| GACGGTGAGTTCTTCGTTAT+CGG | - | chr3.3:81784706-81784725 | None:intergenic | 45.0% | |
| GGTGGTGCCCAAATAACATT+AGG | + | chr3.3:81786128-81786147 | MS.gene38593:intron | 45.0% | |
| GTAGCCTACAAGAACGTCAT+CGG | + | chr3.3:81784747-81784766 | MS.gene38593:CDS | 45.0% | |
| TACTGCTGTTCATCGGGTTT+AGG | - | chr3.3:81786560-81786579 | None:intergenic | 45.0% | |
| TCGGGAAGAGAACGTTTACA+TGG | + | chr3.3:81784611-81784630 | MS.gene38593:CDS | 45.0% | |
| TCTTGTAGGCTACAGAGAGA+AGG | - | chr3.3:81784740-81784759 | None:intergenic | 45.0% | |
| TGCCACCAACTCATCCAATT+AGG | + | chr3.3:81785418-81785437 | MS.gene38593:CDS | 45.0% | |
| TGCCTGCAATCTTGCTAAAC+AGG | + | chr3.3:81785500-81785519 | MS.gene38593:CDS | 45.0% | |
| TTCCTCGATCGAACAGAAAG+AGG | + | chr3.3:81784797-81784816 | MS.gene38593:CDS | 45.0% | |
| ! | AGCCTAATTGGATGAGTTGG+TGG | - | chr3.3:81785423-81785442 | None:intergenic | 45.0% |
| ! | CGAAGAAATGGTGGAGTTCA+TGG | + | chr3.3:81784662-81784681 | MS.gene38593:CDS | 45.0% |
| ! | GCTCCGATTCGATCTTAGAT+CGG | - | chr3.3:81784866-81784885 | None:intergenic | 45.0% |
| AAGAACTCACCGTCGAAGAG+AGG | + | chr3.3:81784712-81784731 | MS.gene38593:CDS | 50.0% | |
| AAGCAGCGGAAGGAATGAGA+CGG | - | chr3.3:81784929-81784948 | None:intergenic | 50.0% | |
| ACACCTTGCTCTAGCCTGTA+GGG | + | chr3.3:81786102-81786121 | MS.gene38593:intron | 50.0% | |
| AGAGCAAGACCCAGCCTAAT+TGG | - | chr3.3:81785435-81785454 | None:intergenic | 50.0% | |
| AGATCGGTAGTCACGGATGA+CGG | - | chr3.3:81784850-81784869 | None:intergenic | 50.0% | |
| AGCCGAACGCTACGAAGAAA+TGG | + | chr3.3:81784650-81784669 | MS.gene38593:CDS | 50.0% | |
| CCCAGCCTAATTGGATGAGT+TGG | - | chr3.3:81785426-81785445 | None:intergenic | 50.0% | |
| CCTTGGCGAGGAATCATACA+AGG | + | chr3.3:81786344-81786363 | MS.gene38593:CDS | 50.0% | |
| CCTTGTATGATTCCTCGCCA+AGG | - | chr3.3:81786347-81786366 | None:intergenic | 50.0% | |
| CGAACGCTACGAAGAAATGG+TGG | + | chr3.3:81784653-81784672 | MS.gene38593:CDS | 50.0% | |
| CTCCTCTTTCTGTTCGATCG+AGG | - | chr3.3:81784802-81784821 | None:intergenic | 50.0% | |
| CTGCATGTCAGAGGTCCATA+GGG | - | chr3.3:81786409-81786428 | None:intergenic | 50.0% | |
| GAGAAGGTTCCTCTCTTCGA+CGG | - | chr3.3:81784724-81784743 | None:intergenic | 50.0% | |
| GAGTTCTTCGTTATCGGCGT+TGG | - | chr3.3:81784700-81784719 | None:intergenic | 50.0% | |
| TAATAGATTCCACCGCTGGG+GGG | - | chr3.3:81785828-81785847 | None:intergenic | 50.0% | |
| TACTACTCGTGTAGTCCCCA+TGG | + | chr3.3:81786151-81786170 | MS.gene38593:intron | 50.0% | |
| TGCTCCGATGACGTTCTTGT+AGG | - | chr3.3:81784754-81784773 | None:intergenic | 50.0% | |
| ! | TTCGTAGCGTTCGGCTTGTT+CGG | - | chr3.3:81784646-81784665 | None:intergenic | 50.0% |
| ! | TTCTTCGTTATCGGCGTTGG+CGG | - | chr3.3:81784697-81784716 | None:intergenic | 50.0% |
| AAACGTGATCCTCGTTGCCG+CGG | - | chr3.3:81784827-81784846 | None:intergenic | 55.0% | |
| AGCAGCGGAAGGAATGAGAC+GGG | - | chr3.3:81784928-81784947 | None:intergenic | 55.0% | |
| AGTCCCTACAGGCTAGAGCA+AGG | - | chr3.3:81786108-81786127 | None:intergenic | 55.0% | |
| CCTATGGACCTCTGACATGC+AGG | + | chr3.3:81786407-81786426 | MS.gene38593:CDS | 55.0% | |
| CCTGCATGTCAGAGGTCCAT+AGG | - | chr3.3:81786410-81786429 | None:intergenic | 55.0% | |
| CGCCGCTTACAAATCTGCTC+AGG | + | chr3.3:81785055-81785074 | MS.gene38593:CDS | 55.0% | |
| CTCATTCCTTCCGCTGCTTC+CGG | + | chr3.3:81784930-81784949 | MS.gene38593:CDS | 55.0% | |
| CTCTTCCCGAGGTGAATGAG+CGG | - | chr3.3:81784601-81784620 | None:intergenic | 55.0% | |
| CTTGGAATCACCGGAAGCAG+CGG | - | chr3.3:81784943-81784962 | None:intergenic | 55.0% | |
| GAACAGAAAGAGGAGAGCCG+CGG | + | chr3.3:81784807-81784826 | MS.gene38593:CDS | 55.0% | |
| GACACCTTGCTCTAGCCTGT+AGG | + | chr3.3:81786101-81786120 | MS.gene38593:intron | 55.0% | |
| GCAAGATTGCAGGCACGATC+AGG | - | chr3.3:81785495-81785514 | None:intergenic | 55.0% | |
| TGAACTGGATACCCTTGGCG+AGG | + | chr3.3:81786332-81786351 | MS.gene38593:CDS | 55.0% | |
| TGTAGAAATTGGCCCCCCAG+CGG | + | chr3.3:81785813-81785832 | MS.gene38593:intron | 55.0% | |
| TTGCTCTAGCCTGTAGGGAC+TGG | + | chr3.3:81786107-81786126 | MS.gene38593:intron | 55.0% | |
| CGCTGCTTCCGGTGATTCCA+AGG | + | chr3.3:81784941-81784960 | MS.gene38593:CDS | 60.0% | |
| CTCAGCAGCCTCCTTACGCT+CGG | - | chr3.3:81785027-81785046 | None:intergenic | 60.0% | |
| CTCTAGCCTGTAGGGACTGG+TGG | + | chr3.3:81786110-81786129 | MS.gene38593:intron | 60.0% | |
| GAATCACCGGAAGCAGCGGA+AGG | - | chr3.3:81784939-81784958 | None:intergenic | 60.0% | |
| AGAAATTGGCCCCCCAGCGG+TGG | + | chr3.3:81785816-81785835 | MS.gene38593:intron | 65.0% | |
| TCGGAGCACGACGTGCTTCG+TGG | + | chr3.3:81784766-81784785 | MS.gene38593:CDS | 65.0% | |
| TGGCGGCCGCTCATTCACCT+CGG | + | chr3.3:81784592-81784611 | MS.gene38593:CDS | 65.0% | |
| TGGGCACCACCAGTCCCTAC+AGG | - | chr3.3:81786119-81786138 | None:intergenic | 65.0% | |
| ! | CAAGACTGGCGCCGAGCGTA+AGG | + | chr3.3:81785013-81785032 | MS.gene38593:CDS | 65.0% |
| AGAGGAGAGCCGCGGCAACG+AGG | + | chr3.3:81784815-81784834 | MS.gene38593:CDS | 70.0% | |
| GGCGGCCGCTCATTCACCTC+GGG | + | chr3.3:81784593-81784612 | MS.gene38593:CDS | 70.0% | |
| ! | GACTGGCGCCGAGCGTAAGG+AGG | + | chr3.3:81785016-81785035 | MS.gene38593:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81784591 | 81786580 | 81784591 | ID=MS.gene38593 |
| chr3.3 | mRNA | 81784591 | 81786580 | 81784591 | ID=MS.gene38593.t1;Parent=MS.gene38593 |
| chr3.3 | exon | 81784591 | 81785076 | 81784591 | ID=MS.gene38593.t1.exon1;Parent=MS.gene38593.t1 |
| chr3.3 | CDS | 81784591 | 81785076 | 81784591 | ID=cds.MS.gene38593.t1;Parent=MS.gene38593.t1 |
| chr3.3 | exon | 81785399 | 81785521 | 81785399 | ID=MS.gene38593.t1.exon2;Parent=MS.gene38593.t1 |
| chr3.3 | CDS | 81785399 | 81785521 | 81785399 | ID=cds.MS.gene38593.t1;Parent=MS.gene38593.t1 |
| chr3.3 | exon | 81786312 | 81786428 | 81786312 | ID=MS.gene38593.t1.exon3;Parent=MS.gene38593.t1 |
| chr3.3 | CDS | 81786312 | 81786428 | 81786312 | ID=cds.MS.gene38593.t1;Parent=MS.gene38593.t1 |
| chr3.3 | exon | 81786524 | 81786580 | 81786524 | ID=MS.gene38593.t1.exon4;Parent=MS.gene38593.t1 |
| chr3.3 | CDS | 81786524 | 81786580 | 81786524 | ID=cds.MS.gene38593.t1;Parent=MS.gene38593.t1 |
| Gene Sequence |
| Protein sequence |
