Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020411.t1 | XP_003602941.1 | 100 | 252 | 0 | 0 | 1 | 252 | 1 | 252 | 1.30E-133 | 485.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020411.t1 | Q96451 | 89.0 | 246 | 27 | 0 | 7 | 252 | 2 | 247 | 1.5e-119 | 430.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020411.t1 | G7J567 | 100.0 | 252 | 0 | 0 | 1 | 252 | 1 | 252 | 9.2e-134 | 485.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48435 | MS.gene020411 | PPI |
| MS.gene020411 | MS.gene050079 | PPI |
| MS.gene020411 | MS.gene38593 | PPI |
| MS.gene55400 | MS.gene020411 | PPI |
| MS.gene020411 | MS.gene53188 | PPI |
| MS.gene020411 | MS.gene043907 | PPI |
| MS.gene006850 | MS.gene020411 | PPI |
| MS.gene020411 | MS.gene48435 | PPI |
| MS.gene020411 | MS.gene55401 | PPI |
| MS.gene020411 | MS.gene010179 | PPI |
| MS.gene020411 | MS.gene054662 | PPI |
| MS.gene066779 | MS.gene020411 | PPI |
| MS.gene020411 | MS.gene055488 | PPI |
| MS.gene020411 | MS.gene010180 | PPI |
| MS.gene020411 | MS.gene028807 | PPI |
| MS.gene54847 | MS.gene020411 | PPI |
| MS.gene020411 | MS.gene035837 | PPI |
| MS.gene020411 | MS.gene043514 | PPI |
| MS.gene020411 | MS.gene052176 | PPI |
| MS.gene020411 | MS.gene31370 | PPI |
| MS.gene020411 | MS.gene013133 | PPI |
| MS.gene020411 | MS.gene013047 | PPI |
| MS.gene020411 | MS.gene56475 | PPI |
| MS.gene020411 | MS.gene64150 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020411.t1 | MTR_3g100620 | 100.000 | 252 | 0 | 0 | 1 | 252 | 1 | 252 | 0.0 | 515 |
| MS.gene020411.t1 | MTR_3g099380 | 76.793 | 237 | 54 | 1 | 11 | 247 | 8 | 243 | 1.45e-135 | 382 |
| MS.gene020411.t1 | MTR_5g064580 | 75.527 | 237 | 57 | 1 | 11 | 247 | 8 | 243 | 8.20e-135 | 380 |
| MS.gene020411.t1 | MTR_0137s0020 | 73.413 | 252 | 62 | 3 | 1 | 251 | 1 | 248 | 6.79e-127 | 360 |
| MS.gene020411.t1 | MTR_3g014060 | 73.016 | 252 | 63 | 3 | 1 | 251 | 1 | 248 | 6.63e-126 | 357 |
| MS.gene020411.t1 | MTR_2g091225 | 65.289 | 242 | 81 | 1 | 10 | 251 | 6 | 244 | 8.22e-116 | 332 |
| MS.gene020411.t1 | MTR_8g086270 | 65.145 | 241 | 81 | 1 | 11 | 251 | 7 | 244 | 1.16e-113 | 327 |
| MS.gene020411.t1 | MTR_5g044160 | 66.809 | 235 | 75 | 1 | 11 | 245 | 7 | 238 | 2.79e-113 | 326 |
| MS.gene020411.t1 | MTR_4g083060 | 66.383 | 235 | 76 | 1 | 11 | 245 | 7 | 238 | 3.28e-112 | 324 |
| MS.gene020411.t1 | MTR_2g015980 | 64.557 | 237 | 80 | 2 | 12 | 248 | 6 | 238 | 3.87e-109 | 315 |
| MS.gene020411.t1 | MTR_2g076960 | 64.681 | 235 | 80 | 1 | 11 | 245 | 8 | 239 | 8.02e-109 | 315 |
| MS.gene020411.t1 | MTR_3g099380 | 73.096 | 197 | 52 | 1 | 11 | 207 | 8 | 203 | 1.61e-105 | 304 |
| MS.gene020411.t1 | MTR_2g091225 | 67.476 | 206 | 67 | 0 | 46 | 251 | 16 | 221 | 1.19e-103 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020411.t1 | AT5G10450 | 84.016 | 244 | 39 | 0 | 8 | 251 | 4 | 247 | 1.17e-155 | 432 |
| MS.gene020411.t1 | AT5G65430 | 82.787 | 244 | 42 | 0 | 8 | 251 | 4 | 247 | 2.84e-154 | 429 |
| MS.gene020411.t1 | AT5G10450 | 84.519 | 239 | 37 | 0 | 8 | 246 | 4 | 242 | 8.08e-153 | 425 |
| MS.gene020411.t1 | AT5G10450 | 84.519 | 239 | 37 | 0 | 8 | 246 | 4 | 242 | 2.77e-152 | 424 |
| MS.gene020411.t1 | AT5G10450 | 84.519 | 239 | 37 | 0 | 8 | 246 | 4 | 242 | 3.77e-152 | 425 |
| MS.gene020411.t1 | AT5G65430 | 83.264 | 239 | 40 | 0 | 8 | 246 | 4 | 242 | 2.58e-151 | 421 |
| MS.gene020411.t1 | AT5G65430 | 83.264 | 239 | 40 | 0 | 8 | 246 | 4 | 242 | 1.05e-150 | 421 |
| MS.gene020411.t1 | AT1G35160 | 73.950 | 238 | 61 | 1 | 11 | 248 | 11 | 247 | 1.52e-132 | 375 |
| MS.gene020411.t1 | AT1G78300 | 73.950 | 238 | 61 | 1 | 10 | 247 | 4 | 240 | 5.99e-132 | 373 |
| MS.gene020411.t1 | AT4G09000 | 73.222 | 239 | 63 | 1 | 11 | 249 | 10 | 247 | 1.77e-131 | 372 |
| MS.gene020411.t1 | AT3G02520 | 73.640 | 239 | 62 | 1 | 10 | 248 | 4 | 241 | 2.67e-131 | 372 |
| MS.gene020411.t1 | AT3G02520 | 73.640 | 239 | 62 | 1 | 10 | 248 | 4 | 241 | 2.67e-131 | 372 |
| MS.gene020411.t1 | AT1G35160 | 74.153 | 236 | 60 | 1 | 11 | 246 | 11 | 245 | 8.68e-131 | 372 |
| MS.gene020411.t1 | AT5G38480 | 73.222 | 239 | 63 | 1 | 10 | 248 | 3 | 240 | 1.09e-129 | 367 |
| MS.gene020411.t1 | AT5G38480 | 72.727 | 242 | 65 | 1 | 10 | 251 | 3 | 243 | 4.05e-129 | 366 |
| MS.gene020411.t1 | AT5G38480 | 72.727 | 242 | 65 | 1 | 10 | 251 | 3 | 243 | 4.05e-129 | 366 |
| MS.gene020411.t1 | AT4G09000 | 73.729 | 236 | 61 | 1 | 11 | 246 | 10 | 244 | 4.21e-129 | 368 |
| MS.gene020411.t1 | AT5G16050 | 73.640 | 239 | 62 | 1 | 10 | 248 | 6 | 243 | 2.84e-125 | 357 |
| MS.gene020411.t1 | AT5G16050 | 73.640 | 239 | 62 | 1 | 10 | 248 | 6 | 243 | 2.84e-125 | 357 |
| MS.gene020411.t1 | AT1G26480 | 67.660 | 235 | 73 | 1 | 11 | 245 | 10 | 241 | 1.44e-115 | 332 |
| MS.gene020411.t1 | AT2G42590 | 63.900 | 241 | 84 | 1 | 11 | 251 | 7 | 244 | 4.23e-108 | 313 |
| MS.gene020411.t1 | AT2G42590 | 64.286 | 238 | 82 | 1 | 11 | 248 | 7 | 241 | 9.95e-108 | 312 |
| MS.gene020411.t1 | AT2G42590 | 64.286 | 238 | 82 | 1 | 11 | 248 | 7 | 241 | 1.36e-107 | 312 |
| MS.gene020411.t1 | AT1G34760 | 63.291 | 237 | 84 | 1 | 11 | 247 | 5 | 238 | 4.34e-107 | 310 |
| MS.gene020411.t1 | AT1G34760 | 63.291 | 237 | 84 | 1 | 11 | 247 | 5 | 238 | 4.70e-107 | 310 |
| MS.gene020411.t1 | AT1G22300 | 63.485 | 241 | 85 | 1 | 11 | 251 | 5 | 242 | 1.08e-103 | 301 |
| MS.gene020411.t1 | AT1G22300 | 63.485 | 241 | 85 | 1 | 11 | 251 | 5 | 242 | 1.32e-103 | 301 |
| MS.gene020411.t1 | AT1G22300 | 63.445 | 238 | 84 | 1 | 11 | 248 | 5 | 239 | 1.81e-102 | 298 |
| MS.gene020411.t1 | AT1G78220 | 43.590 | 234 | 128 | 2 | 11 | 243 | 5 | 235 | 6.20e-62 | 195 |
| MS.gene020411.t1 | AT1G22290 | 40.000 | 210 | 105 | 5 | 14 | 221 | 8 | 198 | 5.08e-38 | 132 |
| MS.gene020411.t1 | AT1G22290 | 39.614 | 207 | 104 | 5 | 14 | 218 | 8 | 195 | 2.18e-37 | 130 |
| MS.gene020411.t1 | AT2G10450 | 68.421 | 38 | 12 | 0 | 211 | 248 | 16 | 53 | 2.15e-11 | 58.9 |
Find 0 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAATCACAAATTAA+AGG | + | 51443:197320-197339 | None:intergenic | 10.0% |
| !! | AATTATAAAATTAAACAGAG+GGG | + | 51443:198399-198418 | None:intergenic | 15.0% |
| !! | AGAATTATAAAATTAAACAG+AGG | + | 51443:198401-198420 | None:intergenic | 15.0% |
| !! | GAATTATAAAATTAAACAGA+GGG | + | 51443:198400-198419 | None:intergenic | 15.0% |
| !! | TCAAAAAATTTCATAGTTAT+TGG | - | 51443:197652-197671 | MS.gene020411:intron | 15.0% |
| !!! | GTTTTTTATTATAAGATGAA+GGG | - | 51443:196844-196863 | MS.gene020411:intron | 15.0% |
| !!! | TATGATTTATATTTTAAGCT+CGG | + | 51443:197753-197772 | None:intergenic | 15.0% |
| !! | ATTATAAAATTAAACAGAGG+GGG | + | 51443:198398-198417 | None:intergenic | 20.0% |
| !! | GAGCTTAAAATATAAATCAT+AGG | - | 51443:197752-197771 | MS.gene020411:intron | 20.0% |
| !! | TGAGGTTATTATAATCTAAT+GGG | - | 51443:197449-197468 | MS.gene020411:intron | 20.0% |
| !! | TGCATTAAAGAAATCTATAT+TGG | - | 51443:198026-198045 | MS.gene020411:intron | 20.0% |
| !!! | AAACAATTTTCTTTTCCTTT+TGG | - | 51443:198521-198540 | MS.gene020411:CDS | 20.0% |
| !!! | AACTATGAAATTTTTTGACT+AGG | + | 51443:197650-197669 | None:intergenic | 20.0% |
| !!! | AATATTGTTATTCATTTGCA+AGG | - | 51443:198176-198195 | MS.gene020411:CDS | 20.0% |
| !!! | AATTCTCTTTTTTTTCTGTT+TGG | - | 51443:198147-198166 | MS.gene020411:CDS | 20.0% |
| !!! | GCATTTTGATTAATAATCAT+TGG | - | 51443:198718-198737 | MS.gene020411:CDS | 20.0% |
| !!! | GGTTTTTTATTATAAGATGA+AGG | - | 51443:196843-196862 | MS.gene020411:intron | 20.0% |
| !!! | TATGTTAAAAACATTTTACC+TGG | + | 51443:198664-198683 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAAGGTTTGTGTT+TGG | - | 51443:197991-198010 | MS.gene020411:intron | 20.0% |
| ! | AACTCAGATTATGATCAATT+TGG | + | 51443:198764-198783 | None:intergenic | 25.0% |
| ! | AACTGCAAATATATGGATAT+TGG | - | 51443:197928-197947 | MS.gene020411:intron | 25.0% |
| ! | AATCTGAGTTAAGCTATATT+TGG | - | 51443:198774-198793 | MS.gene020411:CDS | 25.0% |
| ! | AATTCTAACTGCAGAAAATT+TGG | - | 51443:197825-197844 | MS.gene020411:intron | 25.0% |
| ! | AATTTCATAGTTATTGGAGT+TGG | - | 51443:197658-197677 | MS.gene020411:intron | 25.0% |
| ! | CTGAGGTTATTATAATCTAA+TGG | - | 51443:197448-197467 | MS.gene020411:intron | 25.0% |
| ! | TAGTGAATTTAACTCAGAAT+GGG | - | 51443:198081-198100 | MS.gene020411:intron | 25.0% |
| ! | TTATTCATCTGCAACAAATT+TGG | - | 51443:198363-198382 | MS.gene020411:CDS | 25.0% |
| ! | TTTCATGGTTAAGTTATTGT+GGG | - | 51443:197954-197973 | MS.gene020411:intron | 25.0% |
| !! | ACAAATTAAAGGAAGCATAT+AGG | + | 51443:197309-197328 | None:intergenic | 25.0% |
| !! | ACTTGCTAGAGAAAAAAAAA+AGG | - | 51443:198339-198358 | MS.gene020411:CDS | 25.0% |
| !! | ATTGTTGTGTTTTGTGTTTA+AGG | - | 51443:197018-197037 | MS.gene020411:intron | 25.0% |
| !! | ATTTTCTTTTCCTTTTGGAT+AGG | - | 51443:198526-198545 | MS.gene020411:CDS | 25.0% |
| !!! | AAGAGCGTATATCTATTTTA+CGG | + | 51443:197853-197872 | None:intergenic | 25.0% |
| !!! | ACAGAAAAATGTTCTGAAAA+GGG | + | 51443:198694-198713 | None:intergenic | 25.0% |
| !!! | ATCTTGGTTTTTTGTTTGTT+TGG | - | 51443:197178-197197 | MS.gene020411:intron | 25.0% |
| !!! | ATGAAATTTTTTGACTAGGA+GGG | + | 51443:197646-197665 | None:intergenic | 25.0% |
| !!! | TATGAAATTTTTTGACTAGG+AGG | + | 51443:197647-197666 | None:intergenic | 25.0% |
| AAAGAAAAGAGAAACACAGA+AGG | + | 51443:198482-198501 | None:intergenic | 30.0% | |
| AAATTCAACACTAATTGCTG+AGG | - | 51443:197431-197450 | MS.gene020411:intron | 30.0% | |
| AAGAAATTCACAGCATATCT+AGG | + | 51443:197602-197621 | None:intergenic | 30.0% | |
| AGAATTCTCTCTTTACTCTT+TGG | - | 51443:198264-198283 | MS.gene020411:intron | 30.0% | |
| AGTGAATTTAACTCAGAATG+GGG | - | 51443:198082-198101 | MS.gene020411:intron | 30.0% | |
| ATCAACTCATCCTATAAGAT+TGG | - | 51443:197063-197082 | MS.gene020411:intron | 30.0% | |
| ATTTGCAGTTAGACTACTAT+GGG | + | 51443:197918-197937 | None:intergenic | 30.0% | |
| CATCCTTTCATAAGATACAT+AGG | + | 51443:197562-197581 | None:intergenic | 30.0% | |
| GTAGTCTAACTGCAAATATA+TGG | - | 51443:197921-197940 | MS.gene020411:intron | 30.0% | |
| GTAGTGAATTTAACTCAGAA+TGG | - | 51443:198080-198099 | MS.gene020411:intron | 30.0% | |
| GTTTCATGGTTAAGTTATTG+TGG | - | 51443:197953-197972 | MS.gene020411:intron | 30.0% | |
| TAAAATTGCTTGACCAAACA+AGG | + | 51443:197385-197404 | None:intergenic | 30.0% | |
| TATTTGCAGTTAGACTACTA+TGG | + | 51443:197919-197938 | None:intergenic | 30.0% | |
| TCAACATAACAGAATCTTTG+TGG | + | 51443:197410-197429 | None:intergenic | 30.0% | |
| TCAACTCATCCTATAAGATT+GGG | - | 51443:197064-197083 | MS.gene020411:intron | 30.0% | |
| TTCATGGTTAAGTTATTGTG+GGG | - | 51443:197955-197974 | MS.gene020411:intron | 30.0% | |
| ! | AATCTTATAGGATGAGTTGA+TGG | + | 51443:197064-197083 | None:intergenic | 30.0% |
| ! | GATCAATTTGGAGCAATATT+AGG | + | 51443:198752-198771 | None:intergenic | 30.0% |
| ! | TATACGCTCTTTCTTTTACA+TGG | - | 51443:197862-197881 | MS.gene020411:intron | 30.0% |
| ! | TATGGATATTGGTAGTTTCA+TGG | - | 51443:197939-197958 | MS.gene020411:intron | 30.0% |
| ! | TATTTGGCTGAGTTTAAGAT+TGG | - | 51443:196880-196899 | MS.gene020411:intron | 30.0% |
| !! | GACAGAAAAATGTTCTGAAA+AGG | + | 51443:198695-198714 | None:intergenic | 30.0% |
| ACACATACTGTTCTCTGTTT+AGG | + | 51443:196486-196505 | None:intergenic | 35.0% | |
| AGATGAAGGGTGATTATCAT+AGG | - | 51443:196857-196876 | MS.gene020411:intron | 35.0% | |
| ATTAAACAGAGGGGGAAAAA+AGG | + | 51443:198390-198409 | None:intergenic | 35.0% | |
| CAGATTAACACAAACCTGTT+TGG | + | 51443:197158-197177 | None:intergenic | 35.0% | |
| CGTTAACTCTGATTCAACTT+TGG | + | 51443:196752-196771 | None:intergenic | 35.0% | |
| GAATGAGCAATTGACATGTT+TGG | - | 51443:197490-197509 | MS.gene020411:intron | 35.0% | |
| GAATGTTTGTGGTAGTATTC+TGG | - | 51443:196771-196790 | MS.gene020411:intron | 35.0% | |
| GGGTGATTATCATAGGTATT+TGG | - | 51443:196864-196883 | MS.gene020411:intron | 35.0% | |
| GGTTTGTGTTAATCTGATCT+TGG | - | 51443:197162-197181 | MS.gene020411:intron | 35.0% | |
| GTGCCTATGTATCTTATGAA+AGG | - | 51443:197556-197575 | MS.gene020411:intron | 35.0% | |
| TATAAGTGTGCTGTCTTTGT+AGG | + | 51443:198597-198616 | None:intergenic | 35.0% | |
| TATGGGTTCATTGTTCATTC+AGG | + | 51443:197901-197920 | None:intergenic | 35.0% | |
| TCAGAGTTAACGAATGTTTG+TGG | - | 51443:196760-196779 | MS.gene020411:intron | 35.0% | |
| TCATCCTATAAGATTGGGTT+TGG | - | 51443:197069-197088 | MS.gene020411:intron | 35.0% | |
| TGCTTCTTCAAGTGAAAGTA+AGG | - | 51443:196822-196841 | MS.gene020411:intron | 35.0% | |
| TGTCAATTGCTCATTCTTAG+TGG | + | 51443:197486-197505 | None:intergenic | 35.0% | |
| TTCTGATTTACACAGTGTGT+TGG | - | 51443:197790-197809 | MS.gene020411:intron | 35.0% | |
| ! | AAAAGTTTGCTCATGAAGCT+GGG | - | 51443:198053-198072 | MS.gene020411:intron | 35.0% |
| ! | AAGCTATATTTGGCTTATGC+AGG | - | 51443:198784-198803 | MS.gene020411:CDS | 35.0% |
| ! | ACTTGATAACACAACCAGTA+TGG | + | 51443:198439-198458 | None:intergenic | 35.0% |
| ! | AGAAGTTTTCTGACCTTGTT+TGG | - | 51443:197369-197388 | MS.gene020411:intron | 35.0% |
| ! | GTAAGAAATCCGTTTGACTT+TGG | - | 51443:197528-197547 | MS.gene020411:intron | 35.0% |
| ! | TAAAAGTTTGCTCATGAAGC+TGG | - | 51443:198052-198071 | MS.gene020411:intron | 35.0% |
| !! | AAGAGTGTTGTTTACCATAC+TGG | - | 51443:198422-198441 | MS.gene020411:CDS | 35.0% |
| !! | GAAAAATGTTCTGAAAAGGG+TGG | + | 51443:198691-198710 | None:intergenic | 35.0% |
| !! | TGTTCTCTGTTTAGGTTTTC+TGG | + | 51443:196478-196497 | None:intergenic | 35.0% |
| AGAGCCAAACCCAATCTTAT+AGG | + | 51443:197076-197095 | None:intergenic | 40.0% | |
| AGATCATGTTGTGCTTGTGA+AGG | - | 51443:196717-196736 | MS.gene020411:CDS | 40.0% | |
| ATCTGACAAAGCTTGTGACA+TGG | - | 51443:197132-197151 | MS.gene020411:intron | 40.0% | |
| ATGAAAGGATGTGTGAAAGC+TGG | - | 51443:197571-197590 | MS.gene020411:intron | 40.0% | |
| ATTGCTGAACTGGACACATT+AGG | - | 51443:198563-198582 | MS.gene020411:CDS | 40.0% | |
| CGTTTCTTCGATTGAACAGA+AGG | - | 51443:196675-196694 | MS.gene020411:CDS | 40.0% | |
| CTTTCACTTGAAGAAGCAGA+AGG | + | 51443:196820-196839 | None:intergenic | 40.0% | |
| GCACAAACACCAAAGTCAAA+CGG | + | 51443:197540-197559 | None:intergenic | 40.0% | |
| GTTTAAGGATATTGCTGCTG+CGG | - | 51443:197033-197052 | MS.gene020411:intron | 40.0% | |
| TCCTCAAAAGCCTATCCAAA+AGG | + | 51443:198539-198558 | None:intergenic | 40.0% | |
| TCGATTGAACAGAAGGAAGA+AGG | - | 51443:196682-196701 | MS.gene020411:CDS | 40.0% | |
| TGAGAAAAAATCTGCTGCTG+AGG | - | 51443:196906-196925 | MS.gene020411:intron | 40.0% | |
| TGGAGCAATATTAGGAAGAG+AGG | + | 51443:198744-198763 | None:intergenic | 40.0% | |
| TTCATGCAGAAGCTTGTAGT+GGG | - | 51443:196556-196575 | MS.gene020411:intron | 40.0% | |
| ! | CTCTTTCTTTTACATGGCTG+TGG | - | 51443:197868-197887 | MS.gene020411:intron | 40.0% |
| ! | TCCTTTTGGATAGGCTTTTG+AGG | - | 51443:198535-198554 | MS.gene020411:CDS | 40.0% |
| !! | TGGTAGTATTCTGGAGTTGT+TGG | - | 51443:196780-196799 | MS.gene020411:intron | 40.0% |
| ATGGGGAAATTGCACATGGA+AGG | - | 51443:198099-198118 | MS.gene020411:intron | 45.0% | |
| CACTACAAGCTTCTGCATGA+AGG | + | 51443:196557-196576 | None:intergenic | 45.0% | |
| CAGAATGGGGAAATTGCACA+TGG | - | 51443:198095-198114 | MS.gene020411:intron | 45.0% | |
| CTGGACATCAGAAGTCCAAA+GGG | + | 51443:198645-198664 | None:intergenic | 45.0% | |
| CTTCATGCAGAAGCTTGTAG+TGG | - | 51443:196555-196574 | MS.gene020411:intron | 45.0% | |
| GATCACGTTCTTGTAAGCGA+CGG | + | 51443:196629-196648 | None:intergenic | 45.0% | |
| GTCGCTTACAAGAACGTGAT+CGG | - | 51443:196628-196647 | MS.gene020411:CDS | 45.0% | |
| GTTGTCTTACAAAGCTGCAC+AGG | - | 51443:196936-196955 | MS.gene020411:intron | 45.0% | |
| TCATGCAGAAGCTTGTAGTG+GGG | - | 51443:196557-196576 | MS.gene020411:intron | 45.0% | |
| TCTTGTAAGCGACGGATATG+AGG | + | 51443:196621-196640 | None:intergenic | 45.0% | |
| TGAGGAAGCAATTGCTGAAC+TGG | - | 51443:198553-198572 | MS.gene020411:CDS | 45.0% | |
| ! | CTTGTTCTGCGAGTTTTGCT+AGG | + | 51443:196510-196529 | None:intergenic | 45.0% |
| !!! | AACTTATAATTTTTTAAAAA+AGG | - | 51443:197980-197999 | MS.gene020411:intron | 5.0% |
| !!! | TTTATTATATTGAAAATTTT+AGG | - | 51443:197335-197354 | MS.gene020411:intron | 5.0% |
| AGAACAAGCTGAACGCTACG+AGG | - | 51443:196522-196541 | MS.gene020411:intron | 50.0% | |
| AGCTTGTGACATGGCCAAAC+AGG | - | 51443:197141-197160 | MS.gene020411:intron | 50.0% | |
| CATCAGAAGTCCAAAGGGTG+AGG | + | 51443:198640-198659 | None:intergenic | 50.0% | |
| CCTGGACATCAGAAGTCCAA+AGG | + | 51443:198646-198665 | None:intergenic | 50.0% | |
| CCTTTGGACTTCTGATGTCC+AGG | - | 51443:198643-198662 | MS.gene020411:CDS | 50.0% | |
| TGAGAGACAACCTCACCCTT+TGG | - | 51443:198627-198646 | MS.gene020411:CDS | 50.0% | |
| ! | TCGACGCTAAGCTCTGATGA+TGG | + | 51443:196589-196608 | None:intergenic | 50.0% |
| !! | GCTAAGCTCTGATGATGGTG+TGG | + | 51443:196584-196603 | None:intergenic | 50.0% |
| AGCTGAACGCTACGAGGAGA+TGG | - | 51443:196528-196547 | MS.gene020411:intron | 55.0% | |
| ! | CAGAGCTTAGCGTCGAAGAG+AGG | - | 51443:196593-196612 | MS.gene020411:intron | 55.0% |
| TCGGATCGCTACGTGCTGCG+TGG | - | 51443:196647-196666 | MS.gene020411:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51443 | gene | 196460 | 198826 | 196460 | ID=MS.gene020411 |
| 51443 | mRNA | 196460 | 198826 | 196460 | ID=MS.gene020411.t1;Parent=MS.gene020411 |
| 51443 | exon | 198329 | 198826 | 198329 | ID=MS.gene020411.t1.exon1;Parent=MS.gene020411.t1 |
| 51443 | CDS | 198329 | 198826 | 198329 | ID=cds.MS.gene020411.t1;Parent=MS.gene020411.t1 |
| 51443 | exon | 198124 | 198246 | 198124 | ID=MS.gene020411.t1.exon2;Parent=MS.gene020411.t1 |
| 51443 | CDS | 198124 | 198246 | 198124 | ID=cds.MS.gene020411.t1;Parent=MS.gene020411.t1 |
| 51443 | exon | 196622 | 196738 | 196622 | ID=MS.gene020411.t1.exon3;Parent=MS.gene020411.t1 |
| 51443 | CDS | 196622 | 196738 | 196622 | ID=cds.MS.gene020411.t1;Parent=MS.gene020411.t1 |
| 51443 | exon | 196460 | 196480 | 196460 | ID=MS.gene020411.t1.exon4;Parent=MS.gene020411.t1 |
| 51443 | CDS | 196460 | 196480 | 196460 | ID=cds.MS.gene020411.t1;Parent=MS.gene020411.t1 |
| Gene Sequence |
| Protein sequence |
