Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31370.t1 | XP_013465242.1 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 9.50E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31370.t1 | P42654 | 95.8 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 2.2e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31370.t1 | A0A072VBW0 | 99.6 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 6.8e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013047 | MS.gene31370 | PPI |
| MS.gene054662 | MS.gene31370 | PPI |
| MS.gene55401 | MS.gene31370 | PPI |
| MS.gene052176 | MS.gene31370 | PPI |
| MS.gene38593 | MS.gene31370 | PPI |
| MS.gene010180 | MS.gene31370 | PPI |
| MS.gene56475 | MS.gene31370 | PPI |
| MS.gene31370 | MS.gene53188 | PPI |
| MS.gene31370 | MS.gene043907 | PPI |
| MS.gene010179 | MS.gene31370 | PPI |
| MS.gene64150 | MS.gene31370 | PPI |
| MS.gene48435 | MS.gene31370 | PPI |
| MS.gene55400 | MS.gene31370 | PPI |
| MS.gene055488 | MS.gene31370 | PPI |
| MS.gene020411 | MS.gene31370 | PPI |
| MS.gene013133 | MS.gene31370 | PPI |
| MS.gene043907 | MS.gene31370 | PPI |
| MS.gene006850 | MS.gene31370 | PPI |
| MS.gene050079 | MS.gene31370 | PPI |
| MS.gene035837 | MS.gene31370 | PPI |
| MS.gene066779 | MS.gene31370 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31370.t1 | MTR_2g091225 | 99.617 | 261 | 1 | 0 | 1 | 261 | 1 | 261 | 0.0 | 536 |
| MS.gene31370.t1 | MTR_2g091225 | 99.156 | 237 | 2 | 0 | 25 | 261 | 2 | 238 | 1.69e-177 | 488 |
| MS.gene31370.t1 | MTR_8g086270 | 83.203 | 256 | 43 | 0 | 1 | 256 | 1 | 256 | 1.03e-165 | 459 |
| MS.gene31370.t1 | MTR_2g015980 | 80.709 | 254 | 48 | 1 | 8 | 261 | 6 | 258 | 1.27e-155 | 433 |
| MS.gene31370.t1 | MTR_2g076960 | 77.308 | 260 | 57 | 2 | 1 | 259 | 1 | 259 | 2.45e-152 | 425 |
| MS.gene31370.t1 | MTR_4g083060 | 77.016 | 248 | 57 | 0 | 1 | 248 | 1 | 248 | 1.29e-144 | 406 |
| MS.gene31370.t1 | MTR_5g044160 | 75.410 | 244 | 60 | 0 | 1 | 244 | 1 | 244 | 9.71e-142 | 398 |
| MS.gene31370.t1 | MTR_5g064580 | 72.840 | 243 | 64 | 1 | 7 | 247 | 8 | 250 | 1.16e-129 | 368 |
| MS.gene31370.t1 | MTR_3g099380 | 72.428 | 243 | 65 | 2 | 2 | 242 | 3 | 245 | 3.51e-128 | 364 |
| MS.gene31370.t1 | MTR_3g100620 | 65.289 | 242 | 81 | 1 | 6 | 244 | 10 | 251 | 2.00e-115 | 331 |
| MS.gene31370.t1 | MTR_3g099380 | 69.154 | 201 | 60 | 2 | 2 | 200 | 3 | 203 | 1.12e-98 | 287 |
| MS.gene31370.t1 | MTR_0137s0020 | 52.564 | 234 | 105 | 3 | 7 | 237 | 11 | 241 | 1.76e-76 | 232 |
| MS.gene31370.t1 | MTR_3g014060 | 52.137 | 234 | 106 | 3 | 7 | 237 | 11 | 241 | 9.82e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31370.t1 | AT2G42590 | 82.443 | 262 | 45 | 1 | 1 | 261 | 1 | 262 | 3.66e-162 | 450 |
| MS.gene31370.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.00e-160 | 446 |
| MS.gene31370.t1 | AT2G42590 | 82.129 | 263 | 45 | 2 | 1 | 261 | 1 | 263 | 3.04e-160 | 445 |
| MS.gene31370.t1 | AT1G26480 | 78.689 | 244 | 52 | 0 | 2 | 245 | 5 | 248 | 8.10e-148 | 414 |
| MS.gene31370.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.05e-142 | 399 |
| MS.gene31370.t1 | AT1G34760 | 77.459 | 244 | 55 | 0 | 6 | 249 | 4 | 247 | 3.16e-142 | 399 |
| MS.gene31370.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 2.90e-135 | 382 |
| MS.gene31370.t1 | AT1G22300 | 76.543 | 243 | 57 | 0 | 6 | 248 | 4 | 246 | 4.50e-135 | 381 |
| MS.gene31370.t1 | AT1G22300 | 77.637 | 237 | 53 | 0 | 6 | 242 | 4 | 240 | 1.02e-133 | 377 |
| MS.gene31370.t1 | AT1G78300 | 69.804 | 255 | 73 | 3 | 1 | 253 | 1 | 253 | 2.66e-127 | 362 |
| MS.gene31370.t1 | AT1G35160 | 68.110 | 254 | 79 | 2 | 2 | 253 | 6 | 259 | 8.89e-126 | 358 |
| MS.gene31370.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene31370.t1 | AT5G38480 | 71.429 | 245 | 68 | 2 | 7 | 249 | 4 | 248 | 1.05e-125 | 357 |
| MS.gene31370.t1 | AT4G09000 | 69.231 | 247 | 74 | 2 | 3 | 247 | 6 | 252 | 1.44e-125 | 358 |
| MS.gene31370.t1 | AT5G38480 | 71.545 | 246 | 67 | 3 | 7 | 249 | 4 | 249 | 8.63e-125 | 355 |
| MS.gene31370.t1 | AT1G35160 | 71.130 | 239 | 67 | 2 | 2 | 238 | 6 | 244 | 1.98e-124 | 356 |
| MS.gene31370.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene31370.t1 | AT3G02520 | 70.400 | 250 | 70 | 3 | 4 | 249 | 2 | 251 | 2.87e-124 | 354 |
| MS.gene31370.t1 | AT4G09000 | 70.711 | 239 | 68 | 2 | 2 | 238 | 5 | 243 | 1.28e-123 | 355 |
| MS.gene31370.t1 | AT5G65430 | 68.421 | 247 | 75 | 1 | 1 | 244 | 1 | 247 | 2.67e-123 | 351 |
| MS.gene31370.t1 | AT5G65430 | 68.852 | 244 | 73 | 1 | 1 | 241 | 1 | 244 | 8.41e-123 | 350 |
| MS.gene31370.t1 | AT5G65430 | 69.295 | 241 | 71 | 1 | 1 | 238 | 1 | 241 | 7.64e-122 | 348 |
| MS.gene31370.t1 | AT5G10450 | 65.992 | 247 | 81 | 1 | 1 | 244 | 1 | 247 | 3.96e-120 | 343 |
| MS.gene31370.t1 | AT5G10450 | 66.393 | 244 | 79 | 1 | 1 | 241 | 1 | 244 | 1.00e-119 | 342 |
| MS.gene31370.t1 | AT5G10450 | 66.805 | 241 | 77 | 1 | 1 | 238 | 1 | 241 | 6.59e-119 | 340 |
| MS.gene31370.t1 | AT5G10450 | 63.498 | 263 | 86 | 2 | 1 | 253 | 1 | 263 | 7.63e-119 | 341 |
| MS.gene31370.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene31370.t1 | AT5G16050 | 66.265 | 249 | 82 | 1 | 1 | 247 | 1 | 249 | 3.68e-117 | 336 |
| MS.gene31370.t1 | AT1G78220 | 50.826 | 242 | 115 | 2 | 6 | 246 | 4 | 242 | 4.91e-82 | 246 |
| MS.gene31370.t1 | AT1G22290 | 51.196 | 209 | 78 | 5 | 11 | 214 | 9 | 198 | 7.81e-58 | 184 |
| MS.gene31370.t1 | AT1G22290 | 50.971 | 206 | 77 | 5 | 11 | 211 | 9 | 195 | 8.05e-58 | 183 |
Find 63 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGTGCCATTTGCTTTC+TGG | 0.064697 | 2.4:-9103698 | None:intergenic |
| AATCAAATCACAAACCTTTC+TGG | 0.212632 | 2.4:-9103030 | None:intergenic |
| TAATAATTACCTCCATCTTC+TGG | 0.221124 | 2.4:-9103258 | None:intergenic |
| TGTGAATGCGAAACGGATTA+AGG | 0.355677 | 2.4:+9101687 | MS.gene31370:CDS |
| GATCAATGTACTATCTTTGT+AGG | 0.365217 | 2.4:-9103190 | None:intergenic |
| AATAATTACCTCCATCTTCT+GGG | 0.401437 | 2.4:-9103257 | None:intergenic |
| CATTGATCATGCAACTTCTC+AGG | 0.402439 | 2.4:+9103205 | MS.gene31370:CDS |
| TGTCAGAAGTCCAGAGAGTC+AGG | 0.404705 | 2.4:-9103233 | None:intergenic |
| TCAGGGACAACCTGACTCTC+TGG | 0.410560 | 2.4:+9103223 | MS.gene31370:CDS |
| TCATCCCATTCGATTGGGTC+TGG | 0.415982 | 2.4:+9102966 | MS.gene31370:CDS |
| TACCTTGCGGAATTTAAGTC+TGG | 0.416992 | 2.4:+9101949 | MS.gene31370:CDS |
| CAACAGTCAGTTCCACATCT+AGG | 0.421840 | 2.4:-9101555 | None:intergenic |
| TTCAGCTTGTTCAGCGAGCT+TGG | 0.427417 | 2.4:-9101125 | None:intergenic |
| TCTGTCTTCCATTGAGCAAA+AGG | 0.429678 | 2.4:+9101645 | MS.gene31370:CDS |
| AGCCTGCCATCTTGCAAAGC+AGG | 0.444543 | 2.4:+9103122 | MS.gene31370:CDS |
| TGATGAACATCTTATACCTT+CGG | 0.454250 | 2.4:+9101771 | MS.gene31370:CDS |
| CCCCACTCATCCCATTCGAT+TGG | 0.457840 | 2.4:+9102960 | MS.gene31370:CDS |
| TTTGTAGGACTCCTCATTCA+AGG | 0.458681 | 2.4:-9103175 | None:intergenic |
| GTTGGTTATAAGAATGTGAT+TGG | 0.468424 | 2.4:+9101598 | MS.gene31370:CDS |
| CCCACTCATCCCATTCGATT+GGG | 0.479191 | 2.4:+9102961 | MS.gene31370:CDS |
| CAAAAGCCTGCTTTGCAAGA+TGG | 0.481933 | 2.4:-9103128 | None:intergenic |
| GCAAATGGCACTGCCAAGCT+TGG | 0.496595 | 2.4:+9103705 | MS.gene31370:CDS |
| GTCTGCTACCACTGCAGCAG+AGG | 0.500212 | 2.4:+9102927 | MS.gene31370:intron |
| AGCCTGCTTTGCAAGATGGC+AGG | 0.506046 | 2.4:-9103124 | None:intergenic |
| ATCGTCGCCTCCACCAAGCT+TGG | 0.506577 | 2.4:-9103718 | None:intergenic |
| GGCACTGCCAAGCTTGGTGG+AGG | 0.506966 | 2.4:+9103711 | MS.gene31370:CDS |
| AGATCTTGAATTCACCAGAA+AGG | 0.507071 | 2.4:+9103016 | MS.gene31370:CDS |
| CCCAATCGAATGGGATGAGT+GGG | 0.509191 | 2.4:-9102961 | None:intergenic |
| GAAGAGAACCAGAAAGCAAA+TGG | 0.511133 | 2.4:+9103690 | MS.gene31370:intron |
| TAAGTCTGGCAATGAGAAGA+AGG | 0.514312 | 2.4:+9101963 | MS.gene31370:CDS |
| AATGGCACTGCCAAGCTTGG+TGG | 0.517803 | 2.4:+9103708 | MS.gene31370:CDS |
| ACTTCTGACATCCCAGAAGA+TGG | 0.519225 | 2.4:+9103246 | MS.gene31370:CDS |
| GGCAATGAGAAGAAGGAGGC+TGG | 0.532302 | 2.4:+9101970 | MS.gene31370:CDS |
| TAATTCAGCCTCTGCTGCAG+TGG | 0.536762 | 2.4:-9102935 | None:intergenic |
| AGAGCTCGACACCTTGAATG+AGG | 0.538643 | 2.4:+9103164 | MS.gene31370:CDS |
| CTTATACCTTCGGCTACAGC+TGG | 0.546040 | 2.4:+9101781 | MS.gene31370:CDS |
| ATCGACCATGGCTTCTTCCA+AGG | 0.547642 | 2.4:+9101078 | None:intergenic |
| CAATCGAATGGGATGAGTGG+GGG | 0.551178 | 2.4:-9102959 | None:intergenic |
| AAAGCCAGACCCAATCGAAT+GGG | 0.552082 | 2.4:-9102970 | None:intergenic |
| GAGCAAAAGGAGGAGACTAA+AGG | 0.552658 | 2.4:+9101658 | MS.gene31370:CDS |
| GAACAAGCTGAACGTTATGA+AGG | 0.554290 | 2.4:+9101136 | MS.gene31370:CDS |
| CAAAGCCAGACCCAATCGAA+TGG | 0.557939 | 2.4:-9102971 | None:intergenic |
| GAAAGGAATTTGCTGTCTGT+TGG | 0.574692 | 2.4:+9101580 | MS.gene31370:CDS |
| GAAATGATGTGAATGCGAAA+CGG | 0.574811 | 2.4:+9101680 | MS.gene31370:CDS |
| ACGATCCTTGGAAGAAGCCA+TGG | 0.575038 | 2.4:-9101083 | None:intergenic |
| TGGAACTGACTGTTGAAGAA+AGG | 0.579381 | 2.4:+9101563 | MS.gene31370:CDS |
| TGGTGGAGGCGACGATGCAG+AGG | 0.580215 | 2.4:+9103725 | MS.gene31370:CDS |
| ACCCAATCGAATGGGATGAG+TGG | 0.580587 | 2.4:-9102962 | None:intergenic |
| TTGGTGCTCGCAGAGCCTCA+TGG | 0.582624 | 2.4:+9101617 | MS.gene31370:CDS |
| AATCGAATGGGATGAGTGGG+GGG | 0.585658 | 2.4:-9102958 | None:intergenic |
| ATTGATCATGCAACTTCTCA+GGG | 0.603706 | 2.4:+9103206 | MS.gene31370:CDS |
| CCAATCGAATGGGATGAGTG+GGG | 0.618524 | 2.4:-9102960 | None:intergenic |
| TCAGTCAATGAAAGCATATG+AGG | 0.622769 | 2.4:+9101996 | MS.gene31370:CDS |
| GTCTTCCATTGAGCAAAAGG+AGG | 0.626094 | 2.4:+9101648 | MS.gene31370:CDS |
| TGCCAGACTTAAATTCCGCA+AGG | 0.629305 | 2.4:-9101951 | None:intergenic |
| AGATTATTATCGTTACCTTG+CGG | 0.641586 | 2.4:+9101936 | MS.gene31370:CDS |
| GATTCACCAGCTGTAGCCGA+AGG | 0.643432 | 2.4:-9101787 | None:intergenic |
| GAATGTTGCGAACCTAGATG+TGG | 0.666486 | 2.4:+9101543 | MS.gene31370:CDS |
| GATTAAGGAGTATAGAAACA+AGG | 0.677872 | 2.4:+9101702 | MS.gene31370:CDS |
| TCTGACATCCCAGAAGATGG+AGG | 0.682653 | 2.4:+9103249 | MS.gene31370:CDS |
| GTCTGGCAATGAGAAGAAGG+AGG | 0.687369 | 2.4:+9101966 | MS.gene31370:CDS |
| GGAAGACAGAATCCTCCATG+AGG | 0.726645 | 2.4:-9101632 | None:intergenic |
| GTGCTCGCAGAGCCTCATGG+AGG | 0.748786 | 2.4:+9101620 | MS.gene31370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTACATAAAAATGAAAATA+TGG | - | chr2.4:9102722-9102741 | None:intergenic | 15.0% |
| !! | GACACTTAAAAAAATTTATA+TGG | - | chr2.4:9102299-9102318 | None:intergenic | 15.0% |
| !!! | TAGTTTCTTTTATTAAAAAC+AGG | + | chr2.4:9102506-9102525 | MS.gene31370:intron | 15.0% |
| !!! | TATCAATTTTAATCAAAAAC+CGG | - | chr2.4:9103063-9103082 | None:intergenic | 15.0% |
| !! | ATACTAGAAGAAAATTAACA+TGG | - | chr2.4:9102761-9102780 | None:intergenic | 20.0% |
| !! | ATCAGATATATAACAATAGA+CGG | - | chr2.4:9102638-9102657 | None:intergenic | 20.0% |
| !!! | AAATTTTTTTAAGTGTCTTG+TGG | + | chr2.4:9102302-9102321 | MS.gene31370:intron | 20.0% |
| !!! | ATCAATTTTAATCAAAAACC+GGG | - | chr2.4:9103062-9103081 | None:intergenic | 20.0% |
| !!! | TAAAACAAAGTATTCTGAAT+AGG | - | chr2.4:9102864-9102883 | None:intergenic | 20.0% |
| ! | AAAAGAAACTATAACATGCA+AGG | - | chr2.4:9102497-9102516 | None:intergenic | 25.0% |
| ! | AAAGAAACTATAACATGCAA+GGG | - | chr2.4:9102496-9102515 | None:intergenic | 25.0% |
| ! | AGATGGAGGTAATTATTAAT+AGG | + | chr2.4:9103263-9103282 | MS.gene31370:intron | 25.0% |
| ! | ATAATGATTGGAATGACTAA+TGG | + | chr2.4:9103477-9103496 | MS.gene31370:intron | 25.0% |
| ! | ATGGTTTACTGTTTCAATTA+GGG | + | chr2.4:9101312-9101331 | MS.gene31370:intron | 25.0% |
| ! | GAAGTTTGCAATTAAATCAT+TGG | + | chr2.4:9102423-9102442 | MS.gene31370:intron | 25.0% |
| ! | TAATTGTAGAATCCAACAAT+GGG | + | chr2.4:9102255-9102274 | MS.gene31370:intron | 25.0% |
| ! | TATGGTTTACTGTTTCAATT+AGG | + | chr2.4:9101311-9101330 | MS.gene31370:intron | 25.0% |
| ! | TTAAAAACAGGATTGATTAC+TGG | + | chr2.4:9102518-9102537 | MS.gene31370:intron | 25.0% |
| ! | TTAATGCTGAACATAAATTG+TGG | + | chr2.4:9103601-9103620 | MS.gene31370:intron | 25.0% |
| ! | TTTACACGTCAAATAATGAT+TGG | + | chr2.4:9103465-9103484 | MS.gene31370:intron | 25.0% |
| ! | TTTGTTAGTGTTAGTGTTTA+TGG | + | chr2.4:9101293-9101312 | MS.gene31370:intron | 25.0% |
| !! | ATCAAAGACATGAAATTTTC+AGG | - | chr2.4:9102198-9102217 | None:intergenic | 25.0% |
| !! | ATTGTGGTAGTTATTCTTTT+TGG | + | chr2.4:9103617-9103636 | MS.gene31370:intron | 25.0% |
| !! | CTATTAGCAATTGTTCTAAA+AGG | + | chr2.4:9102123-9102142 | MS.gene31370:intron | 25.0% |
| !! | GTAAAAGCATATAAAGATGA+AGG | - | chr2.4:9103450-9103469 | None:intergenic | 25.0% |
| !! | TTTATATGTTATTTGCACCT+GGG | + | chr2.4:9102048-9102067 | MS.gene31370:intron | 25.0% |
| !!! | AAAATTGATAGTGTGTTTGA+CGG | + | chr2.4:9103073-9103092 | MS.gene31370:intron | 25.0% |
| !!! | AAGTTCCAAATAACTTGTTT+TGG | - | chr2.4:9102348-9102367 | None:intergenic | 25.0% |
| !!! | CTGATGTGATTAAGTTTTTT+GGG | + | chr2.4:9102653-9102672 | MS.gene31370:intron | 25.0% |
| !!! | GAAATCAAGAAGTTTTAAGT+AGG | - | chr2.4:9102898-9102917 | None:intergenic | 25.0% |
| !!! | TCATGTTTTATTCTCTACTA+TGG | + | chr2.4:9101839-9101858 | MS.gene31370:intron | 25.0% |
| !!! | TCTGATGTGATTAAGTTTTT+TGG | + | chr2.4:9102652-9102671 | MS.gene31370:intron | 25.0% |
| AAGAAACTATAACATGCAAG+GGG | - | chr2.4:9102495-9102514 | None:intergenic | 30.0% | |
| AATAATTACCTCCATCTTCT+GGG | - | chr2.4:9103260-9103279 | None:intergenic | 30.0% | |
| AATCAAATCACAAACCTTTC+TGG | - | chr2.4:9103033-9103052 | None:intergenic | 30.0% | |
| AGATTATTATCGTTACCTTG+CGG | + | chr2.4:9101936-9101955 | MS.gene31370:CDS | 30.0% | |
| ATTGTGAATAAACCCATTGT+TGG | - | chr2.4:9102270-9102289 | None:intergenic | 30.0% | |
| CTAATTGTAGAATCCAACAA+TGG | + | chr2.4:9102254-9102273 | MS.gene31370:intron | 30.0% | |
| GATCAATGTACTATCTTTGT+AGG | - | chr2.4:9103193-9103212 | None:intergenic | 30.0% | |
| GCAATATATGCAGCATAAAA+TGG | - | chr2.4:9102573-9102592 | None:intergenic | 30.0% | |
| GTTGGTTATAAGAATGTGAT+TGG | + | chr2.4:9101598-9101617 | MS.gene31370:CDS | 30.0% | |
| TAATAATTACCTCCATCTTC+TGG | - | chr2.4:9103261-9103280 | None:intergenic | 30.0% | |
| TGAAAATATGGATGAAAGCT+AGG | - | chr2.4:9102710-9102729 | None:intergenic | 30.0% | |
| TGATGAACATCTTATACCTT+CGG | + | chr2.4:9101771-9101790 | MS.gene31370:CDS | 30.0% | |
| ! | AAGATGTTTTACAGGAGTAA+GGG | + | chr2.4:9103316-9103335 | MS.gene31370:intron | 30.0% |
| ! | GATTAAGGAGTATAGAAACA+AGG | + | chr2.4:9101702-9101721 | MS.gene31370:CDS | 30.0% |
| ! | GCTCTATTAAGATGTTTTAC+AGG | + | chr2.4:9103308-9103327 | MS.gene31370:intron | 30.0% |
| ! | GTTTATATGTTATTTGCACC+TGG | + | chr2.4:9102047-9102066 | MS.gene31370:intron | 30.0% |
| ! | TAAGATGTTTTACAGGAGTA+AGG | + | chr2.4:9103315-9103334 | MS.gene31370:intron | 30.0% |
| !! | AAATTGATAGTGTGTTTGAC+GGG | + | chr2.4:9103074-9103093 | MS.gene31370:intron | 30.0% |
| !! | TGTGATTTGATTTTGTAACC+CGG | + | chr2.4:9103041-9103060 | MS.gene31370:intron | 30.0% |
| !! | TTTTGGTTGTCCTTTTTCTA+TGG | + | chr2.4:9103634-9103653 | MS.gene31370:intron | 30.0% |
| !!! | TTTTTTTTTGCTGACAGAGA+TGG | + | chr2.4:9101507-9101526 | MS.gene31370:intron | 30.0% |
| ACAGGATTGATTACTGGAAT+TGG | + | chr2.4:9102524-9102543 | MS.gene31370:intron | 35.0% | |
| AGAAACTATAACATGCAAGG+GGG | - | chr2.4:9102494-9102513 | None:intergenic | 35.0% | |
| AGATCTTGAATTCACCAGAA+AGG | + | chr2.4:9103016-9103035 | MS.gene31370:CDS | 35.0% | |
| AGCAGGAAGTCAGAAAAATT+CGG | - | chr2.4:9103667-9103686 | None:intergenic | 35.0% | |
| AGCATTAAATCTCACTGTCT+AGG | - | chr2.4:9103589-9103608 | None:intergenic | 35.0% | |
| ATATGGATGAAAGCTAGGAA+AGG | - | chr2.4:9102705-9102724 | None:intergenic | 35.0% | |
| ATTGATCATGCAACTTCTCA+GGG | + | chr2.4:9103206-9103225 | MS.gene31370:CDS | 35.0% | |
| CGGTAAACATCCATAGAAAA+AGG | - | chr2.4:9103647-9103666 | None:intergenic | 35.0% | |
| GAAATGATGTGAATGCGAAA+CGG | + | chr2.4:9101680-9101699 | MS.gene31370:CDS | 35.0% | |
| GCACATGTTGGATAATTTGA+GGG | - | chr2.4:9103392-9103411 | None:intergenic | 35.0% | |
| GTCTAGGTGACTTCATATAT+AGG | - | chr2.4:9103573-9103592 | None:intergenic | 35.0% | |
| TGCACATGTTGGATAATTTG+AGG | - | chr2.4:9103393-9103412 | None:intergenic | 35.0% | |
| TGCAGCCAAAACAAGTTATT+TGG | + | chr2.4:9102340-9102359 | MS.gene31370:intron | 35.0% | |
| TTGAAAGAGCTGTTAGTCAT+AGG | + | chr2.4:9102833-9102852 | MS.gene31370:intron | 35.0% | |
| ! | TCAGTCAATGAAAGCATATG+AGG | + | chr2.4:9101996-9102015 | MS.gene31370:CDS | 35.0% |
| !! | AATTGATAGTGTGTTTGACG+GGG | + | chr2.4:9103075-9103094 | MS.gene31370:intron | 35.0% |
| !!! | GTTTTGCACAAGTTGATTGT+GGG | + | chr2.4:9101884-9101903 | MS.gene31370:intron | 35.0% |
| !!! | TGTTTTGCACAAGTTGATTG+TGG | + | chr2.4:9101883-9101902 | MS.gene31370:intron | 35.0% |
| AAAGGGAAAAACAATGCAGC+AGG | - | chr2.4:9102458-9102477 | None:intergenic | 40.0% | |
| ACCATCAATACATGGTACAG+AGG | - | chr2.4:9102611-9102630 | None:intergenic | 40.0% | |
| ACGGAAGAACCATCAATACA+TGG | - | chr2.4:9102619-9102638 | None:intergenic | 40.0% | |
| CATTGATCATGCAACTTCTC+AGG | + | chr2.4:9103205-9103224 | MS.gene31370:CDS | 40.0% | |
| GAACAAGCTGAACGTTATGA+AGG | + | chr2.4:9101136-9101155 | MS.gene31370:CDS | 40.0% | |
| GAAGAGAACCAGAAAGCAAA+TGG | + | chr2.4:9103690-9103709 | MS.gene31370:intron | 40.0% | |
| GATTCCGTAGGATATCGTAA+GGG | + | chr2.4:9103338-9103357 | MS.gene31370:intron | 40.0% | |
| GGTGAGTAGTTCTTCAAACT+TGG | + | chr2.4:9103746-9103765 | MS.gene31370:intron | 40.0% | |
| TAAGTCTGGCAATGAGAAGA+AGG | + | chr2.4:9101963-9101982 | MS.gene31370:CDS | 40.0% | |
| TACCTTGCGGAATTTAAGTC+TGG | + | chr2.4:9101949-9101968 | MS.gene31370:CDS | 40.0% | |
| TATGCAGCATAAAATGGCTG+AGG | - | chr2.4:9102567-9102586 | None:intergenic | 40.0% | |
| TCCTCTGTACCATGTATTGA+TGG | + | chr2.4:9102607-9102626 | MS.gene31370:intron | 40.0% | |
| TCTGTCTTCCATTGAGCAAA+AGG | + | chr2.4:9101645-9101664 | MS.gene31370:CDS | 40.0% | |
| TGATTGGAATGACTAATGGC+TGG | + | chr2.4:9103481-9103500 | MS.gene31370:intron | 40.0% | |
| TGGAACTGACTGTTGAAGAA+AGG | + | chr2.4:9101563-9101582 | MS.gene31370:CDS | 40.0% | |
| TGTTTGAATGTTCTGCTTGC+AGG | + | chr2.4:9101908-9101927 | MS.gene31370:intron | 40.0% | |
| TTCTTTGCACTTGCACATGT+TGG | - | chr2.4:9103404-9103423 | None:intergenic | 40.0% | |
| TTTGTAGGACTCCTCATTCA+AGG | - | chr2.4:9103178-9103197 | None:intergenic | 40.0% | |
| !! | ATTGATAGTGTGTTTGACGG+GGG | + | chr2.4:9103076-9103095 | MS.gene31370:intron | 40.0% |
| !! | GAAAGGAATTTGCTGTCTGT+TGG | + | chr2.4:9101580-9101599 | MS.gene31370:CDS | 40.0% |
| !! | TGTGAATGCGAAACGGATTA+AGG | + | chr2.4:9101687-9101706 | MS.gene31370:CDS | 40.0% |
| !!! | TTTTTTGCTGACAGAGATGG+TGG | + | chr2.4:9101510-9101529 | MS.gene31370:intron | 40.0% |
| AAAGCCAGACCCAATCGAAT+GGG | - | chr2.4:9102973-9102992 | None:intergenic | 45.0% | |
| ACTTCTGACATCCCAGAAGA+TGG | + | chr2.4:9103246-9103265 | MS.gene31370:CDS | 45.0% | |
| CAAAAGCCTGCTTTGCAAGA+TGG | - | chr2.4:9103131-9103150 | None:intergenic | 45.0% | |
| CAACAGTCAGTTCCACATCT+AGG | - | chr2.4:9101558-9101577 | None:intergenic | 45.0% | |
| CTAGCCCTTACGATATCCTA+CGG | - | chr2.4:9103345-9103364 | None:intergenic | 45.0% | |
| GAATGTTCTGCTTGCAGGAA+AGG | + | chr2.4:9101913-9101932 | MS.gene31370:intron | 45.0% | |
| GAATGTTGCGAACCTAGATG+TGG | + | chr2.4:9101543-9101562 | MS.gene31370:CDS | 45.0% | |
| GAGCAAAAGGAGGAGACTAA+AGG | + | chr2.4:9101658-9101677 | MS.gene31370:CDS | 45.0% | |
| GGATTCCGTAGGATATCGTA+AGG | + | chr2.4:9103337-9103356 | MS.gene31370:intron | 45.0% | |
| GTCTTCCATTGAGCAAAAGG+AGG | + | chr2.4:9101648-9101667 | MS.gene31370:CDS | 45.0% | |
| TGCCAGACTTAAATTCCGCA+AGG | - | chr2.4:9101954-9101973 | None:intergenic | 45.0% | |
| ! | AGTCTCCTCCTTTTGCTCAA+TGG | - | chr2.4:9101656-9101675 | None:intergenic | 45.0% |
| ! | GACGAAGTTTTCACGATCCT+TGG | - | chr2.4:9101098-9101117 | None:intergenic | 45.0% |
| !! | TTCTGGTTCTCTTCTGTAGC+AGG | - | chr2.4:9103684-9103703 | None:intergenic | 45.0% |
| AACATGCAAGGGGGCAAACA+GGG | - | chr2.4:9102485-9102504 | None:intergenic | 50.0% | |
| AATCGAATGGGATGAGTGGG+GGG | - | chr2.4:9102961-9102980 | None:intergenic | 50.0% | |
| ACAGGAGTAAGGGATTCCGT+AGG | + | chr2.4:9103326-9103345 | MS.gene31370:intron | 50.0% | |
| ACCCAATCGAATGGGATGAG+TGG | - | chr2.4:9102965-9102984 | None:intergenic | 50.0% | |
| AGAGCTCGACACCTTGAATG+AGG | + | chr2.4:9103164-9103183 | MS.gene31370:CDS | 50.0% | |
| ATCACCCATGAGATCTACCC+AGG | - | chr2.4:9102068-9102087 | None:intergenic | 50.0% | |
| CAAAGCCAGACCCAATCGAA+TGG | - | chr2.4:9102974-9102993 | None:intergenic | 50.0% | |
| CAATCGAATGGGATGAGTGG+GGG | - | chr2.4:9102962-9102981 | None:intergenic | 50.0% | |
| CCAATCGAATGGGATGAGTG+GGG | - | chr2.4:9102963-9102982 | None:intergenic | 50.0% | |
| CCCAATCGAATGGGATGAGT+GGG | - | chr2.4:9102964-9102983 | None:intergenic | 50.0% | |
| CCCACTCATCCCATTCGATT+GGG | + | chr2.4:9102961-9102980 | MS.gene31370:CDS | 50.0% | |
| CTTATACCTTCGGCTACAGC+TGG | + | chr2.4:9101781-9101800 | MS.gene31370:CDS | 50.0% | |
| GGAAGACAGAATCCTCCATG+AGG | - | chr2.4:9101635-9101654 | None:intergenic | 50.0% | |
| GGAATGACTAATGGCTGGTG+TGG | + | chr2.4:9103486-9103505 | MS.gene31370:intron | 50.0% | |
| GGGGCAAACAGGGGATAAAA+GGG | - | chr2.4:9102475-9102494 | None:intergenic | 50.0% | |
| GTCTGGCAATGAGAAGAAGG+AGG | + | chr2.4:9101966-9101985 | MS.gene31370:CDS | 50.0% | |
| TAACATGCAAGGGGGCAAAC+AGG | - | chr2.4:9102486-9102505 | None:intergenic | 50.0% | |
| TAATTCAGCCTCTGCTGCAG+TGG | - | chr2.4:9102938-9102957 | None:intergenic | 50.0% | |
| TCATCCCATTCGATTGGGTC+TGG | + | chr2.4:9102966-9102985 | MS.gene31370:CDS | 50.0% | |
| TCTGACATCCCAGAAGATGG+AGG | + | chr2.4:9103249-9103268 | MS.gene31370:CDS | 50.0% | |
| TGCACCTGGGTAGATCTCAT+GGG | + | chr2.4:9102061-9102080 | MS.gene31370:intron | 50.0% | |
| TGTCAGAAGTCCAGAGAGTC+AGG | - | chr2.4:9103236-9103255 | None:intergenic | 50.0% | |
| TTGCACCTGGGTAGATCTCA+TGG | + | chr2.4:9102060-9102079 | MS.gene31370:intron | 50.0% | |
| ! | TTCAGCTTGTTCAGCGAGCT+TGG | - | chr2.4:9101128-9101147 | None:intergenic | 50.0% |
| !! | AGATGGCAGGCTCTGGAAAA+AGG | - | chr2.4:9103114-9103133 | None:intergenic | 50.0% |
| !! | TGGCAGTGCCATTTGCTTTC+TGG | - | chr2.4:9103701-9103720 | None:intergenic | 50.0% |
| AATGGCACTGCCAAGCTTGG+TGG | + | chr2.4:9103708-9103727 | MS.gene31370:CDS | 55.0% | |
| ACATGCAAGGGGGCAAACAG+GGG | - | chr2.4:9102484-9102503 | None:intergenic | 55.0% | |
| AGCCTGCCATCTTGCAAAGC+AGG | + | chr2.4:9103122-9103141 | MS.gene31370:CDS | 55.0% | |
| AGCCTGCTTTGCAAGATGGC+AGG | - | chr2.4:9103127-9103146 | None:intergenic | 55.0% | |
| CCCCACTCATCCCATTCGAT+TGG | + | chr2.4:9102960-9102979 | MS.gene31370:CDS | 55.0% | |
| CTTTGCAAGATGGCAGGCTC+TGG | - | chr2.4:9103121-9103140 | None:intergenic | 55.0% | |
| GATTCACCAGCTGTAGCCGA+AGG | - | chr2.4:9101790-9101809 | None:intergenic | 55.0% | |
| GCAAATGGCACTGCCAAGCT+TGG | + | chr2.4:9103705-9103724 | MS.gene31370:CDS | 55.0% | |
| GGCAATGAGAAGAAGGAGGC+TGG | + | chr2.4:9101970-9101989 | MS.gene31370:CDS | 55.0% | |
| GGGGGCAAACAGGGGATAAA+AGG | - | chr2.4:9102476-9102495 | None:intergenic | 55.0% | |
| TCAGGGACAACCTGACTCTC+TGG | + | chr2.4:9103223-9103242 | MS.gene31370:CDS | 55.0% | |
| ATCGTCGCCTCCACCAAGCT+TGG | - | chr2.4:9103721-9103740 | None:intergenic | 60.0% | |
| GTCTGCTACCACTGCAGCAG+AGG | + | chr2.4:9102927-9102946 | MS.gene31370:intron | 60.0% | |
| ! | TTGGTGCTCGCAGAGCCTCA+TGG | + | chr2.4:9101617-9101636 | MS.gene31370:CDS | 60.0% |
| GTGCTCGCAGAGCCTCATGG+AGG | + | chr2.4:9101620-9101639 | MS.gene31370:CDS | 65.0% | |
| TGGTGGAGGCGACGATGCAG+AGG | + | chr2.4:9103725-9103744 | MS.gene31370:CDS | 65.0% | |
| ! | GGCACTGCCAAGCTTGGTGG+AGG | + | chr2.4:9103711-9103730 | MS.gene31370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 9101085 | 9103835 | 9101085 | ID=MS.gene31370 |
| chr2.4 | mRNA | 9101085 | 9103835 | 9101085 | ID=MS.gene31370.t1;Parent=MS.gene31370 |
| chr2.4 | exon | 9101085 | 9101157 | 9101085 | ID=MS.gene31370.t1.exon1;Parent=MS.gene31370.t1 |
| chr2.4 | CDS | 9101085 | 9101157 | 9101085 | ID=cds.MS.gene31370.t1;Parent=MS.gene31370.t1 |
| chr2.4 | exon | 9101524 | 9101830 | 9101524 | ID=MS.gene31370.t1.exon2;Parent=MS.gene31370.t1 |
| chr2.4 | CDS | 9101524 | 9101830 | 9101524 | ID=cds.MS.gene31370.t1;Parent=MS.gene31370.t1 |
| chr2.4 | exon | 9101930 | 9102017 | 9101930 | ID=MS.gene31370.t1.exon3;Parent=MS.gene31370.t1 |
| chr2.4 | CDS | 9101930 | 9102017 | 9101930 | ID=cds.MS.gene31370.t1;Parent=MS.gene31370.t1 |
| chr2.4 | exon | 9102928 | 9103037 | 9102928 | ID=MS.gene31370.t1.exon4;Parent=MS.gene31370.t1 |
| chr2.4 | CDS | 9102928 | 9103037 | 9102928 | ID=cds.MS.gene31370.t1;Parent=MS.gene31370.t1 |
| chr2.4 | exon | 9103122 | 9103270 | 9103122 | ID=MS.gene31370.t1.exon5;Parent=MS.gene31370.t1 |
| chr2.4 | CDS | 9103122 | 9103270 | 9103122 | ID=cds.MS.gene31370.t1;Parent=MS.gene31370.t1 |
| chr2.4 | exon | 9103691 | 9103746 | 9103691 | ID=MS.gene31370.t1.exon6;Parent=MS.gene31370.t1 |
| chr2.4 | CDS | 9103691 | 9103746 | 9103691 | ID=cds.MS.gene31370.t1;Parent=MS.gene31370.t1 |
| chr2.4 | exon | 9103833 | 9103835 | 9103833 | ID=MS.gene31370.t1.exon7;Parent=MS.gene31370.t1 |
| chr2.4 | CDS | 9103833 | 9103835 | 9103833 | ID=cds.MS.gene31370.t1;Parent=MS.gene31370.t1 |
| Gene Sequence |
| Protein sequence |
