Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010179.t1 | XP_003615160.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 8.80E-138 | 499.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010179.t1 | P42653 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 8.4e-137 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010179.t1 | B7FIY3 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 6.4e-138 | 499.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55401 | MS.gene010179 | PPI |
| MS.gene38593 | MS.gene010179 | PPI |
| MS.gene010180 | MS.gene010179 | PPI |
| MS.gene067412 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene047668 | PPI |
| MS.gene56475 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene53188 | PPI |
| MS.gene041125 | MS.gene010179 | PPI |
| MS.gene48435 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene054662 | PPI |
| MS.gene55400 | MS.gene010179 | PPI |
| MS.gene055488 | MS.gene010179 | PPI |
| MS.gene020411 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene028807 | PPI |
| MS.gene010179 | MS.gene86409 | PPI |
| MS.gene013133 | MS.gene010179 | PPI |
| MS.gene006850 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene052176 | PPI |
| MS.gene010179 | MS.gene31370 | PPI |
| MS.gene050079 | MS.gene010179 | PPI |
| MS.gene035837 | MS.gene010179 | PPI |
| MS.gene066779 | MS.gene010179 | PPI |
| MS.gene71392 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene83541 | PPI |
| MS.gene013047 | MS.gene010179 | PPI |
| MS.gene043514 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene64150 | PPI |
| MS.gene010179 | MS.gene38593 | PPI |
| MS.gene54847 | MS.gene010179 | PPI |
| MS.gene010179 | MS.gene043907 | PPI |
| MS.gene010179 | MS.gene010393 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010179.t1 | MTR_5g064580 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 532 |
| MS.gene010179.t1 | MTR_3g099380 | 90.385 | 260 | 25 | 0 | 1 | 260 | 1 | 260 | 1.18e-176 | 486 |
| MS.gene010179.t1 | MTR_3g099380 | 89.655 | 203 | 21 | 0 | 1 | 203 | 1 | 203 | 2.48e-135 | 380 |
| MS.gene010179.t1 | MTR_3g100620 | 75.949 | 237 | 56 | 1 | 8 | 243 | 11 | 247 | 2.51e-135 | 382 |
| MS.gene010179.t1 | MTR_2g091225 | 72.016 | 243 | 66 | 1 | 8 | 250 | 7 | 247 | 9.18e-129 | 365 |
| MS.gene010179.t1 | MTR_8g086270 | 71.605 | 243 | 67 | 1 | 8 | 250 | 7 | 247 | 4.64e-126 | 358 |
| MS.gene010179.t1 | MTR_2g015980 | 69.020 | 255 | 72 | 3 | 6 | 256 | 3 | 254 | 5.52e-126 | 358 |
| MS.gene010179.t1 | MTR_5g044160 | 70.325 | 246 | 71 | 1 | 3 | 248 | 2 | 245 | 2.16e-124 | 354 |
| MS.gene010179.t1 | MTR_4g083060 | 68.898 | 254 | 72 | 2 | 8 | 256 | 7 | 258 | 7.59e-124 | 354 |
| MS.gene010179.t1 | MTR_2g076960 | 66.154 | 260 | 85 | 2 | 1 | 259 | 1 | 258 | 1.07e-123 | 353 |
| MS.gene010179.t1 | MTR_2g091225 | 70.222 | 225 | 65 | 1 | 26 | 250 | 2 | 224 | 5.56e-116 | 332 |
| MS.gene010179.t1 | MTR_0137s0020 | 58.403 | 238 | 93 | 4 | 8 | 243 | 11 | 244 | 1.69e-91 | 270 |
| MS.gene010179.t1 | MTR_3g014060 | 57.983 | 238 | 94 | 4 | 8 | 243 | 11 | 244 | 1.11e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010179.t1 | AT1G78300 | 90.157 | 254 | 24 | 1 | 8 | 260 | 5 | 258 | 1.70e-169 | 468 |
| MS.gene010179.t1 | AT1G35160 | 85.985 | 264 | 33 | 2 | 1 | 260 | 1 | 264 | 1.79e-167 | 464 |
| MS.gene010179.t1 | AT4G09000 | 88.933 | 253 | 26 | 1 | 1 | 251 | 1 | 253 | 2.43e-166 | 461 |
| MS.gene010179.t1 | AT1G35160 | 77.740 | 292 | 33 | 3 | 1 | 260 | 1 | 292 | 3.38e-161 | 449 |
| MS.gene010179.t1 | AT4G09000 | 89.344 | 244 | 24 | 1 | 1 | 242 | 1 | 244 | 2.60e-160 | 447 |
| MS.gene010179.t1 | AT5G38480 | 81.496 | 254 | 46 | 1 | 6 | 258 | 2 | 255 | 3.17e-154 | 429 |
| MS.gene010179.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.29e-152 | 426 |
| MS.gene010179.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.29e-152 | 426 |
| MS.gene010179.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 9.76e-152 | 423 |
| MS.gene010179.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 9.76e-152 | 423 |
| MS.gene010179.t1 | AT5G10450 | 79.508 | 244 | 49 | 1 | 4 | 246 | 3 | 246 | 3.57e-145 | 406 |
| MS.gene010179.t1 | AT5G10450 | 79.668 | 241 | 48 | 1 | 4 | 243 | 3 | 243 | 8.26e-145 | 405 |
| MS.gene010179.t1 | AT5G10450 | 77.510 | 249 | 55 | 1 | 4 | 251 | 3 | 251 | 8.57e-145 | 406 |
| MS.gene010179.t1 | AT5G10450 | 80.000 | 240 | 47 | 1 | 4 | 242 | 3 | 242 | 5.42e-144 | 404 |
| MS.gene010179.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.21e-143 | 402 |
| MS.gene010179.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.21e-143 | 402 |
| MS.gene010179.t1 | AT5G65430 | 78.138 | 247 | 52 | 2 | 1 | 246 | 1 | 246 | 2.10e-142 | 399 |
| MS.gene010179.t1 | AT5G65430 | 78.279 | 244 | 51 | 2 | 1 | 243 | 1 | 243 | 5.92e-142 | 398 |
| MS.gene010179.t1 | AT5G65430 | 78.601 | 243 | 50 | 2 | 1 | 242 | 1 | 242 | 2.72e-141 | 397 |
| MS.gene010179.t1 | AT1G26480 | 74.180 | 244 | 60 | 3 | 8 | 250 | 10 | 251 | 7.27e-129 | 366 |
| MS.gene010179.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.23e-122 | 349 |
| MS.gene010179.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.25e-122 | 349 |
| MS.gene010179.t1 | AT2G42590 | 70.833 | 240 | 68 | 1 | 8 | 247 | 7 | 244 | 8.79e-122 | 348 |
| MS.gene010179.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 3.66e-121 | 346 |
| MS.gene010179.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 4.58e-121 | 346 |
| MS.gene010179.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.51e-117 | 335 |
| MS.gene010179.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.51e-117 | 335 |
| MS.gene010179.t1 | AT1G22300 | 69.874 | 239 | 70 | 1 | 8 | 246 | 5 | 241 | 1.34e-115 | 332 |
| MS.gene010179.t1 | AT1G78220 | 48.927 | 233 | 116 | 2 | 8 | 239 | 5 | 235 | 1.26e-73 | 225 |
| MS.gene010179.t1 | AT1G22290 | 45.933 | 209 | 91 | 6 | 12 | 217 | 9 | 198 | 4.49e-48 | 159 |
| MS.gene010179.t1 | AT1G22290 | 45.631 | 206 | 90 | 6 | 12 | 214 | 9 | 195 | 6.16e-48 | 157 |
| MS.gene010179.t1 | AT2G10450 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 7.67e-18 | 76.3 |
Find 54 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCTGGTGATTCTA+AGG | 0.228252 | 5.2:+54664621 | MS.gene010179:CDS |
| AAGAATACCGTTACAGATAT+TGG | 0.234430 | 5.2:-54664569 | None:intergenic |
| TACTGCTCATCGGCGCCTTT+TGG | 0.244944 | 5.2:-54666280 | None:intergenic |
| TTGATTCCTTCTGCTGCTTC+TGG | 0.276388 | 5.2:+54664610 | MS.gene010179:CDS |
| CGATGAGGCTATTGCTGAAT+TGG | 0.295305 | 5.2:+54666039 | MS.gene010179:CDS |
| CGAAGAGATGGTCGATTTCA+TGG | 0.314624 | 5.2:+54664342 | MS.gene010179:CDS |
| TGCTTGTGGCCTTGCAAAAC+AGG | 0.353700 | 5.2:+54665574 | MS.gene010179:CDS |
| GATAATCACCTTTCATCTTA+AGG | 0.367061 | 5.2:-54664651 | None:intergenic |
| TTGTTTGGGTTTCAGGATGA+TGG | 0.406709 | 5.2:+54666232 | MS.gene010179:intron |
| TTCGTAACGTTCGGCTTGTT+CGG | 0.410967 | 5.2:-54664323 | None:intergenic |
| AGAGCAAGACCAAGCCTGAT+TGG | 0.420669 | 5.2:-54665506 | None:intergenic |
| TCCGTGATAACCTCACCCTT+TGG | 0.424479 | 5.2:+54666113 | MS.gene010179:CDS |
| GACCATCTCTTCGTAACGTT+CGG | 0.437327 | 5.2:-54664332 | None:intergenic |
| AGATGAAAGGTGATTATCAT+AGG | 0.447012 | 5.2:+54664656 | MS.gene010179:CDS |
| TACCACCAACTCACCCAATC+AGG | 0.450085 | 5.2:+54665492 | MS.gene010179:CDS |
| GCAAGGCCACAAGCACGATC+AGG | 0.466255 | 5.2:-54665566 | None:intergenic |
| ATTGCTGAATTGGATACATT+GGG | 0.469687 | 5.2:+54666049 | MS.gene010179:CDS |
| GCTTTCTTCCTTCTGTTCGA+TGG | 0.473046 | 5.2:-54664482 | None:intergenic |
| TACTGCTTATAAAGCTGCTC+AGG | 0.475422 | 5.2:+54664735 | MS.gene010179:CDS |
| ATCAAAGAAGCCGCACCAAA+AGG | 0.476807 | 5.2:+54666265 | MS.gene010179:CDS |
| GAGCAAGACCAAGCCTGATT+GGG | 0.484933 | 5.2:-54665505 | None:intergenic |
| TATTGCTGAATTGGATACAT+TGG | 0.488219 | 5.2:+54666048 | MS.gene010179:CDS |
| CTCTTCACGCGGTGTTGGTG+CGG | 0.499045 | 5.2:-54664278 | None:intergenic |
| GGTGAGTTCTTCGCTTTCGA+CGG | 0.507397 | 5.2:-54664380 | None:intergenic |
| CGGTGTTGGTGCGGTTGCCA+TGG | 0.510579 | 5.2:-54664269 | None:intergenic |
| TCGGAGCAAGACGTGCTTCG+TGG | 0.514368 | 5.2:+54664446 | MS.gene010179:CDS |
| AACTCTCCTGATCGTGCTTG+TGG | 0.523777 | 5.2:+54665560 | MS.gene010179:CDS |
| CCTTTGGACCTCTGACATGC+AGG | 0.533382 | 5.2:+54666129 | MS.gene010179:CDS |
| TTCTTCGCTTTCGACGGCGG+CGG | 0.538091 | 5.2:-54664374 | None:intergenic |
| GCGTGAAGAGTTCGTCTACA+TGG | 0.544670 | 5.2:+54664291 | MS.gene010179:CDS |
| CCAACTCACCCAATCAGGCT+TGG | 0.548958 | 5.2:+54665497 | MS.gene010179:CDS |
| CATCTCTTCCATCGAACAGA+AGG | 0.549390 | 5.2:+54664474 | MS.gene010179:CDS |
| CCTGCATGTCAGAGGTCCAA+AGG | 0.556945 | 5.2:-54666129 | None:intergenic |
| CTGCATGTCAGAGGTCCAAA+GGG | 0.558806 | 5.2:-54666128 | None:intergenic |
| ACGAACTCTTCACGCGGTGT+TGG | 0.561299 | 5.2:-54664283 | None:intergenic |
| AGCCTGATTGGGTGAGTTGG+TGG | 0.564969 | 5.2:-54665494 | None:intergenic |
| TGAATTGGATACATTGGGAG+AGG | 0.566946 | 5.2:+54666054 | MS.gene010179:CDS |
| TCCAAAGGGTGAGGTTATCA+CGG | 0.578031 | 5.2:-54666114 | None:intergenic |
| CCAAGCCTGATTGGGTGAGT+TGG | 0.579199 | 5.2:-54665497 | None:intergenic |
| GAGTTCTTCGCTTTCGACGG+CGG | 0.587801 | 5.2:-54664377 | None:intergenic |
| GAACTTTCCAATATCTGTAA+CGG | 0.597556 | 5.2:+54664562 | MS.gene010179:CDS |
| TGTCAGAGGTCCAAAGGGTG+AGG | 0.606809 | 5.2:-54666123 | None:intergenic |
| AGATCTGTAATCACGAATCA+CGG | 0.615306 | 5.2:-54664527 | None:intergenic |
| GAATCACCAGAAGCAGCAGA+AGG | 0.617542 | 5.2:-54664616 | None:intergenic |
| TATCTTGCTGAGTTTAAGAG+TGG | 0.621733 | 5.2:+54664679 | MS.gene010179:CDS |
| AGCCGAACGTTACGAAGAGA+TGG | 0.627906 | 5.2:+54664330 | MS.gene010179:CDS |
| ACGATATGATTACTGCTCAT+CGG | 0.628913 | 5.2:-54666290 | None:intergenic |
| ATATCATACCTGCATGTCAG+AGG | 0.643750 | 5.2:-54666137 | None:intergenic |
| ATTGGGAGAGGAATCATACA+AGG | 0.653137 | 5.2:+54666066 | MS.gene010179:CDS |
| GAGGAGGTTACGTTCTTCGA+CGG | 0.656962 | 5.2:-54664401 | None:intergenic |
| TAACATGTTCATCGTTACCA+CGG | 0.672519 | 5.2:-54664504 | None:intergenic |
| GAACAGAAGGAAGAAAGCCG+TGG | 0.676297 | 5.2:+54664487 | MS.gene010179:CDS |
| TATTCATTAGGCTTTCGATG+AGG | 0.689894 | 5.2:+54666024 | MS.gene010179:intron |
| ATGTAGACGAACTCTTCACG+CGG | 0.772962 | 5.2:-54664289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAATTAGGTTAAAATAA+TGG | + | chr5.2:54665085-54665104 | MS.gene010179:intron | 15.0% |
| !!! | ATTTTGGTTTATATTTTGTT+TGG | + | chr5.2:54666217-54666236 | MS.gene010179:intron | 15.0% |
| !!! | TAATATGATTTGTGTTAATT+AGG | + | chr5.2:54664973-54664992 | MS.gene010179:intron | 15.0% |
| !!! | TTTTGGTTTATATTTTGTTT+GGG | + | chr5.2:54666218-54666237 | MS.gene010179:intron | 15.0% |
| !! | AAAATGAAAGTCTTAAATGA+TGG | + | chr5.2:54665172-54665191 | MS.gene010179:intron | 20.0% |
| !! | AATTCACATCAACATTAAAA+AGG | - | chr5.2:54665875-54665894 | None:intergenic | 20.0% |
| !! | AATTTCATTAACATGTTTGT+GGG | + | chr5.2:54665829-54665848 | MS.gene010179:intron | 20.0% |
| !! | ACTACAAACTTTAATTGAAA+AGG | - | chr5.2:54665668-54665687 | None:intergenic | 20.0% |
| !! | TAATGAATATAGAAAAGAAC+AGG | - | chr5.2:54666013-54666032 | None:intergenic | 20.0% |
| !! | TAATTTCATTAACATGTTTG+TGG | + | chr5.2:54665828-54665847 | MS.gene010179:intron | 20.0% |
| !!! | CATATTCTGTTTATTGATTT+TGG | + | chr5.2:54666201-54666220 | MS.gene010179:intron | 20.0% |
| !!! | GATTTGATGATTTCTTAATT+AGG | + | chr5.2:54665073-54665092 | MS.gene010179:intron | 20.0% |
| !!! | TGTTCTTTTCTATATTCATT+AGG | + | chr5.2:54666012-54666031 | MS.gene010179:intron | 20.0% |
| !!! | TTTTCAATTAAAGTTTGTAG+TGG | + | chr5.2:54665667-54665686 | MS.gene010179:intron | 20.0% |
| ! | ACTACAGACTTTAATTGAAA+AGG | - | chr5.2:54665729-54665748 | None:intergenic | 25.0% |
| ! | GAGATCTAACGTTATATTTA+TGG | + | chr5.2:54664773-54664792 | MS.gene010179:intron | 25.0% |
| ! | GCAATATTTCAAACAAAGAA+TGG | - | chr5.2:54664883-54664902 | None:intergenic | 25.0% |
| ! | TATTCTAGATACCGAATAAT+GGG | + | chr5.2:54665601-54665620 | MS.gene010179:intron | 25.0% |
| ! | TTTAGGTAAGGGAAATTTAA+CGG | + | chr5.2:54664917-54664936 | MS.gene010179:intron | 25.0% |
| !! | AATGTTGATGTGAATTTGTT+AGG | + | chr5.2:54665879-54665898 | MS.gene010179:intron | 25.0% |
| !! | TGATTCTGTTCTGTTATTTA+TGG | + | chr5.2:54665967-54665986 | MS.gene010179:intron | 25.0% |
| !! | TTTCAAATGAGTTGAATGTA+GGG | + | chr5.2:54665130-54665149 | MS.gene010179:intron | 25.0% |
| !! | TTTTCAATTAAAGTCTGTAG+TGG | + | chr5.2:54665728-54665747 | MS.gene010179:intron | 25.0% |
| !!! | TGTAGGGTATTGTTTATTTT+TGG | + | chr5.2:54665146-54665165 | MS.gene010179:intron | 25.0% |
| !!! | TTATATTTTGTTTGGGTTTC+AGG | + | chr5.2:54666225-54666244 | MS.gene010179:intron | 25.0% |
| !!! | TTTAATTTGACTCTGTTTGT+AGG | + | chr5.2:54665451-54665470 | MS.gene010179:intron | 25.0% |
| !!! | TTTTCAAATGAGTTGAATGT+AGG | + | chr5.2:54665129-54665148 | MS.gene010179:intron | 25.0% |
| AAGAATACCGTTACAGATAT+TGG | - | chr5.2:54664572-54664591 | None:intergenic | 30.0% | |
| AGATGAAAGGTGATTATCAT+AGG | + | chr5.2:54664656-54664675 | MS.gene010179:CDS | 30.0% | |
| ATTGCTGAATTGGATACATT+GGG | + | chr5.2:54666049-54666068 | MS.gene010179:CDS | 30.0% | |
| GAACTTTCCAATATCTGTAA+CGG | + | chr5.2:54664562-54664581 | MS.gene010179:CDS | 30.0% | |
| GATAATCACCTTTCATCTTA+AGG | - | chr5.2:54664654-54664673 | None:intergenic | 30.0% | |
| GTATTCTAGATACCGAATAA+TGG | + | chr5.2:54665600-54665619 | MS.gene010179:intron | 30.0% | |
| TATTGCTGAATTGGATACAT+TGG | + | chr5.2:54666048-54666067 | MS.gene010179:CDS | 30.0% | |
| TATTTGTTCCTCAACAAGTT+TGG | + | chr5.2:54665931-54665950 | MS.gene010179:intron | 30.0% | |
| TTAGATCTCAGAGAAAAAGA+TGG | - | chr5.2:54664762-54664781 | None:intergenic | 30.0% | |
| ! | CTATAACTGACTTTAGGTAA+GGG | + | chr5.2:54664906-54664925 | MS.gene010179:intron | 30.0% |
| ! | GTTTTCTACCTTAAGATGAA+AGG | + | chr5.2:54664643-54664662 | MS.gene010179:CDS | 30.0% |
| ! | TCTATAACTGACTTTAGGTA+AGG | + | chr5.2:54664905-54664924 | MS.gene010179:intron | 30.0% |
| ! | TTTAACGGAGTTTTTGTGTT+TGG | + | chr5.2:54664932-54664951 | MS.gene010179:intron | 30.0% |
| AATGGGAGATGATGTTCATT+TGG | + | chr5.2:54665618-54665637 | MS.gene010179:intron | 35.0% | |
| AGATCTGTAATCACGAATCA+CGG | - | chr5.2:54664530-54664549 | None:intergenic | 35.0% | |
| ATATTGACACCTCTGATCAA+AGG | + | chr5.2:54665299-54665318 | MS.gene010179:intron | 35.0% | |
| GAACATCATCTCCCATTATT+CGG | - | chr5.2:54665615-54665634 | None:intergenic | 35.0% | |
| TAACATGTTCATCGTTACCA+CGG | - | chr5.2:54664507-54664526 | None:intergenic | 35.0% | |
| TATCTTGCTGAGTTTAAGAG+TGG | + | chr5.2:54664679-54664698 | MS.gene010179:CDS | 35.0% | |
| TATTCATTAGGCTTTCGATG+AGG | + | chr5.2:54666024-54666043 | MS.gene010179:intron | 35.0% | |
| TTGAACATAATCATGTGCGT+CGG | - | chr5.2:54665348-54665367 | None:intergenic | 35.0% | |
| ! | GAATACTAACCTGTTTTGCA+AGG | - | chr5.2:54665586-54665605 | None:intergenic | 35.0% |
| ! | GTGTTATTATTGCGTCAGTT+TGG | + | chr5.2:54665404-54665423 | MS.gene010179:intron | 35.0% |
| ! | TGCGATCTATAACTGACTTT+AGG | + | chr5.2:54664900-54664919 | MS.gene010179:intron | 35.0% |
| !! | GATGTGAATTTGTTAGGTTC+TGG | + | chr5.2:54665885-54665904 | MS.gene010179:intron | 35.0% |
| ATATCATACCTGCATGTCAG+AGG | - | chr5.2:54666140-54666159 | None:intergenic | 40.0% | |
| ATTGGGAGAGGAATCATACA+AGG | + | chr5.2:54666066-54666085 | MS.gene010179:CDS | 40.0% | |
| TACTGCTTATAAAGCTGCTC+AGG | + | chr5.2:54664735-54664754 | MS.gene010179:CDS | 40.0% | |
| TGAATTGGATACATTGGGAG+AGG | + | chr5.2:54666054-54666073 | MS.gene010179:CDS | 40.0% | |
| ! | TTGTTTGGGTTTCAGGATGA+TGG | + | chr5.2:54666232-54666251 | MS.gene010179:intron | 40.0% |
| !! | ATGCTACACCAAACTTGTTG+AGG | - | chr5.2:54665942-54665961 | None:intergenic | 40.0% |
| ATCAAAGAAGCCGCACCAAA+AGG | + | chr5.2:54666265-54666284 | MS.gene010179:CDS | 45.0% | |
| ATGTAGACGAACTCTTCACG+CGG | - | chr5.2:54664292-54664311 | None:intergenic | 45.0% | |
| CATCTCTTCCATCGAACAGA+AGG | + | chr5.2:54664474-54664493 | MS.gene010179:CDS | 45.0% | |
| CGATGAGGCTATTGCTGAAT+TGG | + | chr5.2:54666039-54666058 | MS.gene010179:CDS | 45.0% | |
| GACCATCTCTTCGTAACGTT+CGG | - | chr5.2:54664335-54664354 | None:intergenic | 45.0% | |
| GCTTTCTTCCTTCTGTTCGA+TGG | - | chr5.2:54664485-54664504 | None:intergenic | 45.0% | |
| GTCGCCTACAAAAACGTCAT+CGG | + | chr5.2:54664427-54664446 | MS.gene010179:CDS | 45.0% | |
| TCCAAAGGGTGAGGTTATCA+CGG | - | chr5.2:54666117-54666136 | None:intergenic | 45.0% | |
| ! | CGAAGAGATGGTCGATTTCA+TGG | + | chr5.2:54664342-54664361 | MS.gene010179:CDS | 45.0% |
| ! | GATGACGTTTTTGTAGGCGA+CGG | - | chr5.2:54664428-54664447 | None:intergenic | 45.0% |
| ! | TGCTCCGATGACGTTTTTGT+AGG | - | chr5.2:54664434-54664453 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTGGTGATTCTA+AGG | + | chr5.2:54664621-54664640 | MS.gene010179:CDS | 45.0% |
| ! | TTCGTAACGTTCGGCTTGTT+CGG | - | chr5.2:54664326-54664345 | None:intergenic | 45.0% |
| ! | TTGATTCCTTCTGCTGCTTC+TGG | + | chr5.2:54664610-54664629 | MS.gene010179:CDS | 45.0% |
| AACTCTCCTGATCGTGCTTG+TGG | + | chr5.2:54665560-54665579 | MS.gene010179:CDS | 50.0% | |
| AGAGCAAGACCAAGCCTGAT+TGG | - | chr5.2:54665509-54665528 | None:intergenic | 50.0% | |
| AGCCGAACGTTACGAAGAGA+TGG | + | chr5.2:54664330-54664349 | MS.gene010179:CDS | 50.0% | |
| CTGCATGTCAGAGGTCCAAA+GGG | - | chr5.2:54666131-54666150 | None:intergenic | 50.0% | |
| GAACAGAAGGAAGAAAGCCG+TGG | + | chr5.2:54664487-54664506 | MS.gene010179:CDS | 50.0% | |
| GAATCACCAGAAGCAGCAGA+AGG | - | chr5.2:54664619-54664638 | None:intergenic | 50.0% | |
| GAGCAAGACCAAGCCTGATT+GGG | - | chr5.2:54665508-54665527 | None:intergenic | 50.0% | |
| GAGGAGGTTACGTTCTTCGA+CGG | - | chr5.2:54664404-54664423 | None:intergenic | 50.0% | |
| GCGTGAAGAGTTCGTCTACA+TGG | + | chr5.2:54664291-54664310 | MS.gene010179:CDS | 50.0% | |
| GGTGAGTTCTTCGCTTTCGA+CGG | - | chr5.2:54664383-54664402 | None:intergenic | 50.0% | |
| TACCACCAACTCACCCAATC+AGG | + | chr5.2:54665492-54665511 | MS.gene010179:CDS | 50.0% | |
| TCCGTGATAACCTCACCCTT+TGG | + | chr5.2:54666113-54666132 | MS.gene010179:CDS | 50.0% | |
| ! | TGCTTGTGGCCTTGCAAAAC+AGG | + | chr5.2:54665574-54665593 | MS.gene010179:CDS | 50.0% |
| ! | TGTGGGAGCTTTAGTGCAGT+GGG | + | chr5.2:54665846-54665865 | MS.gene010179:intron | 50.0% |
| ! | TTGTGGGAGCTTTAGTGCAG+TGG | + | chr5.2:54665845-54665864 | MS.gene010179:intron | 50.0% |
| ACGAACTCTTCACGCGGTGT+TGG | - | chr5.2:54664286-54664305 | None:intergenic | 55.0% | |
| CCAACTCACCCAATCAGGCT+TGG | + | chr5.2:54665497-54665516 | MS.gene010179:CDS | 55.0% | |
| CCAAGCCTGATTGGGTGAGT+TGG | - | chr5.2:54665500-54665519 | None:intergenic | 55.0% | |
| CCAGACACGCCTTTGATCAG+AGG | - | chr5.2:54665311-54665330 | None:intergenic | 55.0% | |
| CCTGCATGTCAGAGGTCCAA+AGG | - | chr5.2:54666132-54666151 | None:intergenic | 55.0% | |
| CCTTTGGACCTCTGACATGC+AGG | + | chr5.2:54666129-54666148 | MS.gene010179:CDS | 55.0% | |
| GAGTTCTTCGCTTTCGACGG+CGG | - | chr5.2:54664380-54664399 | None:intergenic | 55.0% | |
| TGTCAGAGGTCCAAAGGGTG+AGG | - | chr5.2:54666126-54666145 | None:intergenic | 55.0% | |
| ! | AGCCTGATTGGGTGAGTTGG+TGG | - | chr5.2:54665497-54665516 | None:intergenic | 55.0% |
| ! | AGGCGTGTCTGGTTTCTGAC+AGG | + | chr5.2:54665319-54665338 | MS.gene010179:intron | 55.0% |
| ! | CCTCTGATCAAAGGCGTGTC+TGG | + | chr5.2:54665308-54665327 | MS.gene010179:intron | 55.0% |
| ! | CGTTTTTGTAGGCGACGGAG+AGG | - | chr5.2:54664423-54664442 | None:intergenic | 55.0% |
| ! | GCGTGTCTGGTTTCTGACAG+GGG | + | chr5.2:54665321-54665340 | MS.gene010179:intron | 55.0% |
| ! | GGCGTGTCTGGTTTCTGACA+GGG | + | chr5.2:54665320-54665339 | MS.gene010179:intron | 55.0% |
| ! | TACTGCTCATCGGCGCCTTT+TGG | - | chr5.2:54666283-54666302 | None:intergenic | 55.0% |
| ! | TTTTGTAGGCGACGGAGAGG+AGG | - | chr5.2:54664420-54664439 | None:intergenic | 55.0% |
| GCAAGGCCACAAGCACGATC+AGG | - | chr5.2:54665569-54665588 | None:intergenic | 60.0% | |
| TCGGAGCAAGACGTGCTTCG+TGG | + | chr5.2:54664446-54664465 | MS.gene010179:CDS | 60.0% | |
| TTCTTCGCTTTCGACGGCGG+CGG | - | chr5.2:54664377-54664396 | None:intergenic | 60.0% | |
| ! | CTCATCGGCGCCTTTTGGTG+CGG | - | chr5.2:54666278-54666297 | None:intergenic | 60.0% |
| !! | CTCTTCACGCGGTGTTGGTG+CGG | - | chr5.2:54664281-54664300 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 54664271 | 54666303 | 54664271 | ID=MS.gene010179 |
| chr5.2 | mRNA | 54664271 | 54666303 | 54664271 | ID=MS.gene010179.t1;Parent=MS.gene010179 |
| chr5.2 | exon | 54664271 | 54664756 | 54664271 | ID=MS.gene010179.t1.exon1;Parent=MS.gene010179.t1 |
| chr5.2 | CDS | 54664271 | 54664756 | 54664271 | ID=cds.MS.gene010179.t1;Parent=MS.gene010179.t1 |
| chr5.2 | exon | 54665473 | 54665595 | 54665473 | ID=MS.gene010179.t1.exon2;Parent=MS.gene010179.t1 |
| chr5.2 | CDS | 54665473 | 54665595 | 54665473 | ID=cds.MS.gene010179.t1;Parent=MS.gene010179.t1 |
| chr5.2 | exon | 54666034 | 54666150 | 54666034 | ID=MS.gene010179.t1.exon3;Parent=MS.gene010179.t1 |
| chr5.2 | CDS | 54666034 | 54666150 | 54666034 | ID=cds.MS.gene010179.t1;Parent=MS.gene010179.t1 |
| chr5.2 | exon | 54666247 | 54666303 | 54666247 | ID=MS.gene010179.t1.exon4;Parent=MS.gene010179.t1 |
| chr5.2 | CDS | 54666247 | 54666303 | 54666247 | ID=cds.MS.gene010179.t1;Parent=MS.gene010179.t1 |
| Gene Sequence |
| Protein sequence |
