Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013047.t1 | XP_003602941.1 | 100 | 252 | 0 | 0 | 1 | 252 | 1 | 252 | 1.30E-133 | 485.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013047.t1 | Q96451 | 89.0 | 246 | 27 | 0 | 7 | 252 | 2 | 247 | 1.5e-119 | 430.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013047.t1 | G7J567 | 100.0 | 252 | 0 | 0 | 1 | 252 | 1 | 252 | 9.2e-134 | 485.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013047 | MS.gene052176 | PPI |
| MS.gene006850 | MS.gene013047 | PPI |
| MS.gene013047 | MS.gene31370 | PPI |
| MS.gene55401 | MS.gene013047 | PPI |
| MS.gene066779 | MS.gene013047 | PPI |
| MS.gene043514 | MS.gene013047 | PPI |
| MS.gene013047 | MS.gene64150 | PPI |
| MS.gene54847 | MS.gene013047 | PPI |
| MS.gene56475 | MS.gene013047 | PPI |
| MS.gene013047 | MS.gene050079 | PPI |
| MS.gene013047 | MS.gene38593 | PPI |
| MS.gene013047 | MS.gene53188 | PPI |
| MS.gene013047 | MS.gene043907 | PPI |
| MS.gene55400 | MS.gene013047 | PPI |
| MS.gene013133 | MS.gene013047 | PPI |
| MS.gene013047 | MS.gene010179 | PPI |
| MS.gene013047 | MS.gene054662 | PPI |
| MS.gene48435 | MS.gene013047 | PPI |
| MS.gene013047 | MS.gene010180 | PPI |
| MS.gene013047 | MS.gene028807 | PPI |
| MS.gene035837 | MS.gene013047 | PPI |
| MS.gene055488 | MS.gene013047 | PPI |
| MS.gene020411 | MS.gene013047 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013047.t1 | MTR_3g100620 | 100.000 | 252 | 0 | 0 | 1 | 252 | 1 | 252 | 0.0 | 515 |
| MS.gene013047.t1 | MTR_3g099380 | 76.793 | 237 | 54 | 1 | 11 | 247 | 8 | 243 | 1.45e-135 | 382 |
| MS.gene013047.t1 | MTR_5g064580 | 75.527 | 237 | 57 | 1 | 11 | 247 | 8 | 243 | 8.20e-135 | 380 |
| MS.gene013047.t1 | MTR_0137s0020 | 73.413 | 252 | 62 | 3 | 1 | 251 | 1 | 248 | 6.79e-127 | 360 |
| MS.gene013047.t1 | MTR_3g014060 | 73.016 | 252 | 63 | 3 | 1 | 251 | 1 | 248 | 6.63e-126 | 357 |
| MS.gene013047.t1 | MTR_2g091225 | 65.289 | 242 | 81 | 1 | 10 | 251 | 6 | 244 | 8.22e-116 | 332 |
| MS.gene013047.t1 | MTR_8g086270 | 65.145 | 241 | 81 | 1 | 11 | 251 | 7 | 244 | 1.16e-113 | 327 |
| MS.gene013047.t1 | MTR_5g044160 | 66.809 | 235 | 75 | 1 | 11 | 245 | 7 | 238 | 2.79e-113 | 326 |
| MS.gene013047.t1 | MTR_4g083060 | 66.383 | 235 | 76 | 1 | 11 | 245 | 7 | 238 | 3.28e-112 | 324 |
| MS.gene013047.t1 | MTR_2g015980 | 64.557 | 237 | 80 | 2 | 12 | 248 | 6 | 238 | 3.87e-109 | 315 |
| MS.gene013047.t1 | MTR_2g076960 | 64.681 | 235 | 80 | 1 | 11 | 245 | 8 | 239 | 8.02e-109 | 315 |
| MS.gene013047.t1 | MTR_3g099380 | 73.096 | 197 | 52 | 1 | 11 | 207 | 8 | 203 | 1.61e-105 | 304 |
| MS.gene013047.t1 | MTR_2g091225 | 67.476 | 206 | 67 | 0 | 46 | 251 | 16 | 221 | 1.19e-103 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013047.t1 | AT5G10450 | 84.016 | 244 | 39 | 0 | 8 | 251 | 4 | 247 | 1.17e-155 | 432 |
| MS.gene013047.t1 | AT5G65430 | 82.787 | 244 | 42 | 0 | 8 | 251 | 4 | 247 | 2.84e-154 | 429 |
| MS.gene013047.t1 | AT5G10450 | 84.519 | 239 | 37 | 0 | 8 | 246 | 4 | 242 | 8.08e-153 | 425 |
| MS.gene013047.t1 | AT5G10450 | 84.519 | 239 | 37 | 0 | 8 | 246 | 4 | 242 | 2.77e-152 | 424 |
| MS.gene013047.t1 | AT5G10450 | 84.519 | 239 | 37 | 0 | 8 | 246 | 4 | 242 | 3.77e-152 | 425 |
| MS.gene013047.t1 | AT5G65430 | 83.264 | 239 | 40 | 0 | 8 | 246 | 4 | 242 | 2.58e-151 | 421 |
| MS.gene013047.t1 | AT5G65430 | 83.264 | 239 | 40 | 0 | 8 | 246 | 4 | 242 | 1.05e-150 | 421 |
| MS.gene013047.t1 | AT1G35160 | 73.950 | 238 | 61 | 1 | 11 | 248 | 11 | 247 | 1.52e-132 | 375 |
| MS.gene013047.t1 | AT1G78300 | 73.950 | 238 | 61 | 1 | 10 | 247 | 4 | 240 | 5.99e-132 | 373 |
| MS.gene013047.t1 | AT4G09000 | 73.222 | 239 | 63 | 1 | 11 | 249 | 10 | 247 | 1.77e-131 | 372 |
| MS.gene013047.t1 | AT3G02520 | 73.640 | 239 | 62 | 1 | 10 | 248 | 4 | 241 | 2.67e-131 | 372 |
| MS.gene013047.t1 | AT3G02520 | 73.640 | 239 | 62 | 1 | 10 | 248 | 4 | 241 | 2.67e-131 | 372 |
| MS.gene013047.t1 | AT1G35160 | 74.153 | 236 | 60 | 1 | 11 | 246 | 11 | 245 | 8.68e-131 | 372 |
| MS.gene013047.t1 | AT5G38480 | 73.222 | 239 | 63 | 1 | 10 | 248 | 3 | 240 | 1.09e-129 | 367 |
| MS.gene013047.t1 | AT5G38480 | 72.727 | 242 | 65 | 1 | 10 | 251 | 3 | 243 | 4.05e-129 | 366 |
| MS.gene013047.t1 | AT5G38480 | 72.727 | 242 | 65 | 1 | 10 | 251 | 3 | 243 | 4.05e-129 | 366 |
| MS.gene013047.t1 | AT4G09000 | 73.729 | 236 | 61 | 1 | 11 | 246 | 10 | 244 | 4.21e-129 | 368 |
| MS.gene013047.t1 | AT5G16050 | 73.640 | 239 | 62 | 1 | 10 | 248 | 6 | 243 | 2.84e-125 | 357 |
| MS.gene013047.t1 | AT5G16050 | 73.640 | 239 | 62 | 1 | 10 | 248 | 6 | 243 | 2.84e-125 | 357 |
| MS.gene013047.t1 | AT1G26480 | 67.660 | 235 | 73 | 1 | 11 | 245 | 10 | 241 | 1.44e-115 | 332 |
| MS.gene013047.t1 | AT2G42590 | 63.900 | 241 | 84 | 1 | 11 | 251 | 7 | 244 | 4.23e-108 | 313 |
| MS.gene013047.t1 | AT2G42590 | 64.286 | 238 | 82 | 1 | 11 | 248 | 7 | 241 | 9.95e-108 | 312 |
| MS.gene013047.t1 | AT2G42590 | 64.286 | 238 | 82 | 1 | 11 | 248 | 7 | 241 | 1.36e-107 | 312 |
| MS.gene013047.t1 | AT1G34760 | 63.291 | 237 | 84 | 1 | 11 | 247 | 5 | 238 | 4.34e-107 | 310 |
| MS.gene013047.t1 | AT1G34760 | 63.291 | 237 | 84 | 1 | 11 | 247 | 5 | 238 | 4.70e-107 | 310 |
| MS.gene013047.t1 | AT1G22300 | 63.485 | 241 | 85 | 1 | 11 | 251 | 5 | 242 | 1.08e-103 | 301 |
| MS.gene013047.t1 | AT1G22300 | 63.485 | 241 | 85 | 1 | 11 | 251 | 5 | 242 | 1.32e-103 | 301 |
| MS.gene013047.t1 | AT1G22300 | 63.445 | 238 | 84 | 1 | 11 | 248 | 5 | 239 | 1.81e-102 | 298 |
| MS.gene013047.t1 | AT1G78220 | 43.590 | 234 | 128 | 2 | 11 | 243 | 5 | 235 | 6.20e-62 | 195 |
| MS.gene013047.t1 | AT1G22290 | 40.000 | 210 | 105 | 5 | 14 | 221 | 8 | 198 | 5.08e-38 | 132 |
| MS.gene013047.t1 | AT1G22290 | 39.614 | 207 | 104 | 5 | 14 | 218 | 8 | 195 | 2.18e-37 | 130 |
| MS.gene013047.t1 | AT2G10450 | 68.421 | 38 | 12 | 0 | 211 | 248 | 16 | 53 | 2.15e-11 | 58.9 |
Find 46 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGTGTGCTGTCTTTGT+AGG | 0.261422 | 3.3:-83520004 | None:intergenic |
| GAATGTTTGTGGTAGTATTC+TGG | 0.294961 | 3.3:+83518170 | MS.gene013047:CDS |
| GGGTGATTATCATAGGTATT+TGG | 0.311976 | 3.3:+83518263 | MS.gene013047:CDS |
| ACACATACTGTTCTCTGTTT+AGG | 0.318322 | 3.3:-83517882 | None:intergenic |
| ATCAACTCATCCTATAAGAT+TGG | 0.331215 | 3.3:+83518462 | MS.gene013047:CDS |
| TGAGGAAGCAATTGCTGAAC+TGG | 0.348492 | 3.3:+83519963 | MS.gene013047:CDS |
| AGAGCCAAACCCAATCTTAT+AGG | 0.362825 | 3.3:-83518472 | None:intergenic |
| AGCTTGTGACATGGCCAAAC+AGG | 0.376909 | 3.3:+83518540 | MS.gene013047:CDS |
| CGTTAACTCTGATTCAACTT+TGG | 0.380898 | 3.3:-83518148 | None:intergenic |
| TCATCCTATAAGATTGGGTT+TGG | 0.386635 | 3.3:+83518468 | MS.gene013047:CDS |
| TGCTTCTTCAAGTGAAAGTA+AGG | 0.390843 | 3.3:+83518221 | MS.gene013047:CDS |
| CAGATTAACACAAACCTGTT+TGG | 0.398433 | 3.3:-83518554 | None:intergenic |
| TGAGAGACAACCTCACCCTT+TGG | 0.419313 | 3.3:+83520037 | MS.gene013047:CDS |
| TATTTGGCTGAGTTTAAGAT+TGG | 0.435348 | 3.3:+83518279 | MS.gene013047:CDS |
| ATTGCTGAACTGGACACATT+AGG | 0.448432 | 3.3:+83519973 | MS.gene013047:CDS |
| TCAACTCATCCTATAAGATT+GGG | 0.451846 | 3.3:+83518463 | MS.gene013047:CDS |
| TGGTAGTATTCTGGAGTTGT+TGG | 0.453677 | 3.3:+83518179 | MS.gene013047:CDS |
| AGATGAAGGGTGATTATCAT+AGG | 0.459315 | 3.3:+83518256 | MS.gene013047:CDS |
| TCTTGTAAGCGACGGATATG+AGG | 0.463010 | 3.3:-83518017 | None:intergenic |
| CGTTTCTTCGATTGAACAGA+AGG | 0.478904 | 3.3:+83518074 | MS.gene013047:CDS |
| CCTTTGGACTTCTGATGTCC+AGG | 0.486316 | 3.3:+83520053 | MS.gene013047:CDS |
| GTTGTCTTACAAAGCTGCAC+AGG | 0.491542 | 3.3:+83518335 | MS.gene013047:CDS |
| TTCATGCAGAAGCTTGTAGT+GGG | 0.493249 | 3.3:+83517955 | MS.gene013047:CDS |
| AATCTTATAGGATGAGTTGA+TGG | 0.494756 | 3.3:-83518460 | None:intergenic |
| TCAGAGTTAACGAATGTTTG+TGG | 0.495537 | 3.3:+83518159 | MS.gene013047:CDS |
| TCGATTGAACAGAAGGAAGA+AGG | 0.502247 | 3.3:+83518081 | MS.gene013047:CDS |
| GATATCAAGGCTCATCTAGC+TGG | 0.506112 | 3.3:-83520218 | None:intergenic |
| CTTCATGCAGAAGCTTGTAG+TGG | 0.529618 | 3.3:+83517954 | MS.gene013047:CDS |
| CTTTCACTTGAAGAAGCAGA+AGG | 0.537834 | 3.3:-83518216 | None:intergenic |
| CACTACAAGCTTCTGCATGA+AGG | 0.552358 | 3.3:-83517953 | None:intergenic |
| GTCGCTTACAAGAACGTGAT+CGG | 0.573437 | 3.3:+83518027 | MS.gene013047:CDS |
| CAGAGCTTAGCGTCGAAGAG+AGG | 0.573495 | 3.3:+83517992 | MS.gene013047:CDS |
| CTGGACATCAGAAGTCCAAA+GGG | 0.585147 | 3.3:-83520052 | None:intergenic |
| AGCTGAACGCTACGAGGAGA+TGG | 0.585286 | 3.3:+83517927 | MS.gene013047:CDS |
| TCGACGCTAAGCTCTGATGA+TGG | 0.586328 | 3.3:-83517985 | None:intergenic |
| CATCAGAAGTCCAAAGGGTG+AGG | 0.595169 | 3.3:-83520047 | None:intergenic |
| ATCTGACAAAGCTTGTGACA+TGG | 0.613255 | 3.3:+83518531 | MS.gene013047:CDS |
| CCTGGACATCAGAAGTCCAA+AGG | 0.616148 | 3.3:-83520053 | None:intergenic |
| AGATCATGTTGTGCTTGTGA+AGG | 0.627894 | 3.3:+83518116 | MS.gene013047:CDS |
| GTTTAAGGATATTGCTGCTG+CGG | 0.646957 | 3.3:+83518432 | MS.gene013047:intron |
| GCTAAGCTCTGATGATGGTG+TGG | 0.653682 | 3.3:-83517980 | None:intergenic |
| TCATGCAGAAGCTTGTAGTG+GGG | 0.666058 | 3.3:+83517956 | MS.gene013047:CDS |
| AGAGAAGAGAGAATCATGGG+TGG | 0.672151 | 3.3:+83517844 | None:intergenic |
| TCGGATCGCTACGTGCTGCG+TGG | 0.678712 | 3.3:+83518046 | MS.gene013047:CDS |
| AGAACAAGCTGAACGCTACG+AGG | 0.693981 | 3.3:+83517921 | MS.gene013047:CDS |
| GATCACGTTCTTGTAAGCGA+CGG | 0.709037 | 3.3:-83518025 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAATCACAAATTAA+AGG | - | chr3.3:83518719-83518738 | None:intergenic | 10.0% |
| !! | TCAAAAAATTTCATAGTTAT+TGG | + | chr3.3:83519051-83519070 | MS.gene013047:intron | 15.0% |
| !!! | GTTTTTTATTATAAGATGAA+GGG | + | chr3.3:83518243-83518262 | MS.gene013047:CDS | 15.0% |
| !!! | TATGATTTATATTTTAAGCT+CGG | - | chr3.3:83519152-83519171 | None:intergenic | 15.0% |
| !! | AGCATTATAAAATTAAACAG+AGG | - | chr3.3:83519811-83519830 | None:intergenic | 20.0% |
| !! | ATTATAAAATTAAACAGAGG+GGG | - | chr3.3:83519808-83519827 | None:intergenic | 20.0% |
| !! | CATTATAAAATTAAACAGAG+GGG | - | chr3.3:83519809-83519828 | None:intergenic | 20.0% |
| !! | GAGCTTAAAATATAAATCAT+AGG | + | chr3.3:83519151-83519170 | MS.gene013047:intron | 20.0% |
| !! | GCATTATAAAATTAAACAGA+GGG | - | chr3.3:83519810-83519829 | None:intergenic | 20.0% |
| !! | TGAGGTTATTATAATCTAAT+GGG | + | chr3.3:83518848-83518867 | MS.gene013047:intron | 20.0% |
| !! | TGCATTAAAGAAATCTATAT+TGG | + | chr3.3:83519424-83519443 | MS.gene013047:intron | 20.0% |
| !!! | AAACAATTTTCTTTTCCTTT+TGG | + | chr3.3:83519931-83519950 | MS.gene013047:intron | 20.0% |
| !!! | AACTATGAAATTTTTTGACT+AGG | - | chr3.3:83519049-83519068 | None:intergenic | 20.0% |
| !!! | AATATTGTTATTCATTTGCA+AGG | + | chr3.3:83519586-83519605 | MS.gene013047:intron | 20.0% |
| !!! | AATTCTCTTTTTTTTCTGTT+TGG | + | chr3.3:83519557-83519576 | MS.gene013047:intron | 20.0% |
| !!! | GCATTTTGATTAATAATCAT+TGG | + | chr3.3:83520128-83520147 | MS.gene013047:intron | 20.0% |
| !!! | GGTTTTTTATTATAAGATGA+AGG | + | chr3.3:83518242-83518261 | MS.gene013047:CDS | 20.0% |
| !!! | TATGTTAAAAACATTTTACC+TGG | - | chr3.3:83520074-83520093 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAAGGTTTGTGTT+TGG | + | chr3.3:83519389-83519408 | MS.gene013047:intron | 20.0% |
| ! | AACTCAGATTATGATCAATT+TGG | - | chr3.3:83520174-83520193 | None:intergenic | 25.0% |
| ! | AACTGGAAATATATGGATAT+TGG | + | chr3.3:83519326-83519345 | MS.gene013047:intron | 25.0% |
| ! | AATCTGAGTTAAGCTATATT+TGG | + | chr3.3:83520184-83520203 | MS.gene013047:intron | 25.0% |
| ! | AATTCTAACTGCAGAAAATT+TGG | + | chr3.3:83519223-83519242 | MS.gene013047:intron | 25.0% |
| ! | AATTTCATAGTTATTGGAGT+TGG | + | chr3.3:83519057-83519076 | MS.gene013047:intron | 25.0% |
| ! | CTGAGGTTATTATAATCTAA+TGG | + | chr3.3:83518847-83518866 | MS.gene013047:intron | 25.0% |
| ! | TTATTCATCTGCAACAAATT+TGG | + | chr3.3:83519773-83519792 | MS.gene013047:intron | 25.0% |
| ! | TTTCATGGTTAAGTTATTGT+GGG | + | chr3.3:83519352-83519371 | MS.gene013047:intron | 25.0% |
| !! | ACAAATTAAAGGAAGCATAT+AGG | - | chr3.3:83518708-83518727 | None:intergenic | 25.0% |
| !! | ACTTGCTAGAGAAAAAAAAA+AGG | + | chr3.3:83519749-83519768 | MS.gene013047:intron | 25.0% |
| !! | ATTGTTGTGTTTTGTGTTTA+AGG | + | chr3.3:83518417-83518436 | MS.gene013047:intron | 25.0% |
| !! | ATTTTCTTTTCCTTTTGGAT+AGG | + | chr3.3:83519936-83519955 | MS.gene013047:intron | 25.0% |
| !!! | AAGAGCGTATATCTATTTTA+CGG | - | chr3.3:83519251-83519270 | None:intergenic | 25.0% |
| !!! | ACAGAAAAATGTTCTGAAAA+GGG | - | chr3.3:83520104-83520123 | None:intergenic | 25.0% |
| !!! | ATCTTGGTTTTTTGTTTGTT+TGG | + | chr3.3:83518577-83518596 | MS.gene013047:intron | 25.0% |
| !!! | ATGAAATTTTTTGACTAGGA+GGG | - | chr3.3:83519045-83519064 | None:intergenic | 25.0% |
| !!! | TATGAAATTTTTTGACTAGG+AGG | - | chr3.3:83519046-83519065 | None:intergenic | 25.0% |
| AAAGAAAAGAGAAACACAGA+AGG | - | chr3.3:83519892-83519911 | None:intergenic | 30.0% | |
| AAATTCAACACTAATTGCTG+AGG | + | chr3.3:83518830-83518849 | MS.gene013047:intron | 30.0% | |
| AAGAAATTCACAGCATATCT+AGG | - | chr3.3:83519001-83519020 | None:intergenic | 30.0% | |
| AGAATTCTCTCTTTACTCTT+TGG | + | chr3.3:83519674-83519693 | MS.gene013047:intron | 30.0% | |
| AGTGAATTTAACTCAGAATG+GGG | + | chr3.3:83519492-83519511 | MS.gene013047:intron | 30.0% | |
| ATCAACTCATCCTATAAGAT+TGG | + | chr3.3:83518462-83518481 | MS.gene013047:CDS | 30.0% | |
| ATTTCCAGTTAGACTACTAT+GGG | - | chr3.3:83519316-83519335 | None:intergenic | 30.0% | |
| CATCCTTTCATAAGATACAT+AGG | - | chr3.3:83518961-83518980 | None:intergenic | 30.0% | |
| GAGTGAATTTAACTCAGAAT+GGG | + | chr3.3:83519491-83519510 | MS.gene013047:intron | 30.0% | |
| GTAGTCTAACTGGAAATATA+TGG | + | chr3.3:83519319-83519338 | MS.gene013047:intron | 30.0% | |
| GTTTCATGGTTAAGTTATTG+TGG | + | chr3.3:83519351-83519370 | MS.gene013047:intron | 30.0% | |
| TAAAATTGCTTGACCAAACA+AGG | - | chr3.3:83518784-83518803 | None:intergenic | 30.0% | |
| TATTTCCAGTTAGACTACTA+TGG | - | chr3.3:83519317-83519336 | None:intergenic | 30.0% | |
| TCAACATAACAGAATCTTTG+TGG | - | chr3.3:83518809-83518828 | None:intergenic | 30.0% | |
| TCAACTCATCCTATAAGATT+GGG | + | chr3.3:83518463-83518482 | MS.gene013047:CDS | 30.0% | |
| TGAGTGAATTTAACTCAGAA+TGG | + | chr3.3:83519490-83519509 | MS.gene013047:intron | 30.0% | |
| TTCATGGTTAAGTTATTGTG+GGG | + | chr3.3:83519353-83519372 | MS.gene013047:intron | 30.0% | |
| ! | AATCTTATAGGATGAGTTGA+TGG | - | chr3.3:83518463-83518482 | None:intergenic | 30.0% |
| ! | GATCAATTTGGAGCAATATT+AGG | - | chr3.3:83520162-83520181 | None:intergenic | 30.0% |
| ! | TATACGCTCTTTCTTTTACA+TGG | + | chr3.3:83519260-83519279 | MS.gene013047:intron | 30.0% |
| ! | TATGGATATTGGTAGTTTCA+TGG | + | chr3.3:83519337-83519356 | MS.gene013047:intron | 30.0% |
| ! | TATTTGGCTGAGTTTAAGAT+TGG | + | chr3.3:83518279-83518298 | MS.gene013047:CDS | 30.0% |
| !! | GACAGAAAAATGTTCTGAAA+AGG | - | chr3.3:83520105-83520124 | None:intergenic | 30.0% |
| ACACATACTGTTCTCTGTTT+AGG | - | chr3.3:83517885-83517904 | None:intergenic | 35.0% | |
| AGATGAAGGGTGATTATCAT+AGG | + | chr3.3:83518256-83518275 | MS.gene013047:CDS | 35.0% | |
| ATTAAACAGAGGGGGAAAAA+AGG | - | chr3.3:83519800-83519819 | None:intergenic | 35.0% | |
| CAGATTAACACAAACCTGTT+TGG | - | chr3.3:83518557-83518576 | None:intergenic | 35.0% | |
| CGTTAACTCTGATTCAACTT+TGG | - | chr3.3:83518151-83518170 | None:intergenic | 35.0% | |
| GAATGAGCAATTGACATGTT+TGG | + | chr3.3:83518889-83518908 | MS.gene013047:intron | 35.0% | |
| GAATGTTTGTGGTAGTATTC+TGG | + | chr3.3:83518170-83518189 | MS.gene013047:CDS | 35.0% | |
| GGGTGATTATCATAGGTATT+TGG | + | chr3.3:83518263-83518282 | MS.gene013047:CDS | 35.0% | |
| GGTTTGTGTTAATCTGATCT+TGG | + | chr3.3:83518561-83518580 | MS.gene013047:intron | 35.0% | |
| GTGCCTATGTATCTTATGAA+AGG | + | chr3.3:83518955-83518974 | MS.gene013047:intron | 35.0% | |
| TATAAGTGTGCTGTCTTTGT+AGG | - | chr3.3:83520007-83520026 | None:intergenic | 35.0% | |
| TATGGGTTCATTGTTCATTC+AGG | - | chr3.3:83519299-83519318 | None:intergenic | 35.0% | |
| TCAGAGTTAACGAATGTTTG+TGG | + | chr3.3:83518159-83518178 | MS.gene013047:CDS | 35.0% | |
| TCATCCTATAAGATTGGGTT+TGG | + | chr3.3:83518468-83518487 | MS.gene013047:CDS | 35.0% | |
| TGCTTCTTCAAGTGAAAGTA+AGG | + | chr3.3:83518221-83518240 | MS.gene013047:CDS | 35.0% | |
| TGTCAATTGCTCATTCTTAG+TGG | - | chr3.3:83518885-83518904 | None:intergenic | 35.0% | |
| TTCTGATTTACACACTGTGT+TGG | + | chr3.3:83519188-83519207 | MS.gene013047:intron | 35.0% | |
| ! | AAAAGTTTGCTCATGAAGCT+GGG | + | chr3.3:83519451-83519470 | MS.gene013047:intron | 35.0% |
| ! | AAGCTATATTTGGCTTATGC+AGG | + | chr3.3:83520194-83520213 | MS.gene013047:intron | 35.0% |
| ! | ACTTGATAACACAACCAGTA+TGG | - | chr3.3:83519849-83519868 | None:intergenic | 35.0% |
| ! | AGAAGTTTTCTGACCTTGTT+TGG | + | chr3.3:83518768-83518787 | MS.gene013047:intron | 35.0% |
| ! | GTAAGAAATCCGTTTGACTT+TGG | + | chr3.3:83518927-83518946 | MS.gene013047:intron | 35.0% |
| ! | TAAAAGTTTGCTCATGAAGC+TGG | + | chr3.3:83519450-83519469 | MS.gene013047:intron | 35.0% |
| ! | TGTGTTATTCAGTTGAGCTA+TGG | + | chr3.3:83518624-83518643 | MS.gene013047:intron | 35.0% |
| !! | AAGAGTGTTGTTTACCATAC+TGG | + | chr3.3:83519832-83519851 | MS.gene013047:intron | 35.0% |
| !! | GAAAAATGTTCTGAAAAGGG+TGG | - | chr3.3:83520101-83520120 | None:intergenic | 35.0% |
| !! | TGTTCTCTGTTTAGGTTTTC+TGG | - | chr3.3:83517877-83517896 | None:intergenic | 35.0% |
| AGAGCCAAACCCAATCTTAT+AGG | - | chr3.3:83518475-83518494 | None:intergenic | 40.0% | |
| AGATCATGTTGTGCTTGTGA+AGG | + | chr3.3:83518116-83518135 | MS.gene013047:CDS | 40.0% | |
| ATCTGACAAAGCTTGTGACA+TGG | + | chr3.3:83518531-83518550 | MS.gene013047:CDS | 40.0% | |
| ATGAAAGGATGTGTGAAAGC+TGG | + | chr3.3:83518970-83518989 | MS.gene013047:intron | 40.0% | |
| ATTGCTGAACTGGACACATT+AGG | + | chr3.3:83519973-83519992 | MS.gene013047:CDS | 40.0% | |
| CGTTTCTTCGATTGAACAGA+AGG | + | chr3.3:83518074-83518093 | MS.gene013047:CDS | 40.0% | |
| CTTTCACTTGAAGAAGCAGA+AGG | - | chr3.3:83518219-83518238 | None:intergenic | 40.0% | |
| GCACAAACACCAAAGTCAAA+CGG | - | chr3.3:83518939-83518958 | None:intergenic | 40.0% | |
| GTTTAAGGATATTGCTGCTG+CGG | + | chr3.3:83518432-83518451 | MS.gene013047:intron | 40.0% | |
| TCCTCAAAAGCCTATCCAAA+AGG | - | chr3.3:83519949-83519968 | None:intergenic | 40.0% | |
| TCGATTGAACAGAAGGAAGA+AGG | + | chr3.3:83518081-83518100 | MS.gene013047:CDS | 40.0% | |
| TGAACCCATAGTAGTCTAAC+TGG | + | chr3.3:83519309-83519328 | MS.gene013047:intron | 40.0% | |
| TGAGAAAAAATCTGCTGCTG+AGG | + | chr3.3:83518305-83518324 | MS.gene013047:CDS | 40.0% | |
| TGGAGCAATATTAGGAAGAG+AGG | - | chr3.3:83520154-83520173 | None:intergenic | 40.0% | |
| TTCATGCAGAAGCTTGTAGT+GGG | + | chr3.3:83517955-83517974 | MS.gene013047:CDS | 40.0% | |
| ! | CTCTTTCTTTTACATGGCTG+TGG | + | chr3.3:83519266-83519285 | MS.gene013047:intron | 40.0% |
| ! | TCCTTTTGGATAGGCTTTTG+AGG | + | chr3.3:83519945-83519964 | MS.gene013047:intron | 40.0% |
| !! | TGGTAGTATTCTGGAGTTGT+TGG | + | chr3.3:83518179-83518198 | MS.gene013047:CDS | 40.0% |
| ATGGGGAAATTGCACATGGA+AGG | + | chr3.3:83519509-83519528 | MS.gene013047:intron | 45.0% | |
| CACTACAAGCTTCTGCATGA+AGG | - | chr3.3:83517956-83517975 | None:intergenic | 45.0% | |
| CAGAATGGGGAAATTGCACA+TGG | + | chr3.3:83519505-83519524 | MS.gene013047:intron | 45.0% | |
| CTGGACATCAGAAGTCCAAA+GGG | - | chr3.3:83520055-83520074 | None:intergenic | 45.0% | |
| CTTCATGCAGAAGCTTGTAG+TGG | + | chr3.3:83517954-83517973 | MS.gene013047:CDS | 45.0% | |
| GATCACGTTCTTGTAAGCGA+CGG | - | chr3.3:83518028-83518047 | None:intergenic | 45.0% | |
| GTCGCTTACAAGAACGTGAT+CGG | + | chr3.3:83518027-83518046 | MS.gene013047:CDS | 45.0% | |
| GTTGTCTTACAAAGCTGCAC+AGG | + | chr3.3:83518335-83518354 | MS.gene013047:CDS | 45.0% | |
| TCATGCAGAAGCTTGTAGTG+GGG | + | chr3.3:83517956-83517975 | MS.gene013047:CDS | 45.0% | |
| TCTTGTAAGCGACGGATATG+AGG | - | chr3.3:83518020-83518039 | None:intergenic | 45.0% | |
| TGAGGAAGCAATTGCTGAAC+TGG | + | chr3.3:83519963-83519982 | MS.gene013047:CDS | 45.0% | |
| ! | CTTGTTCTGCGAGTTTTGCT+AGG | - | chr3.3:83517909-83517928 | None:intergenic | 45.0% |
| !!! | AACTTATAATTTTTTAAAAA+AGG | + | chr3.3:83519378-83519397 | MS.gene013047:intron | 5.0% |
| !!! | TTTATTATATTGAAAATTTT+AGG | + | chr3.3:83518734-83518753 | MS.gene013047:intron | 5.0% |
| AGAACAAGCTGAACGCTACG+AGG | + | chr3.3:83517921-83517940 | MS.gene013047:CDS | 50.0% | |
| AGCTTGTGACATGGCCAAAC+AGG | + | chr3.3:83518540-83518559 | MS.gene013047:CDS | 50.0% | |
| CATCAGAAGTCCAAAGGGTG+AGG | - | chr3.3:83520050-83520069 | None:intergenic | 50.0% | |
| CCTGGACATCAGAAGTCCAA+AGG | - | chr3.3:83520056-83520075 | None:intergenic | 50.0% | |
| CCTTTGGACTTCTGATGTCC+AGG | + | chr3.3:83520053-83520072 | MS.gene013047:CDS | 50.0% | |
| TGAGAGACAACCTCACCCTT+TGG | + | chr3.3:83520037-83520056 | MS.gene013047:CDS | 50.0% | |
| ! | TCGACGCTAAGCTCTGATGA+TGG | - | chr3.3:83517988-83518007 | None:intergenic | 50.0% |
| !! | GCTAAGCTCTGATGATGGTG+TGG | - | chr3.3:83517983-83518002 | None:intergenic | 50.0% |
| AGCTGAACGCTACGAGGAGA+TGG | + | chr3.3:83517927-83517946 | MS.gene013047:CDS | 55.0% | |
| ! | CAGAGCTTAGCGTCGAAGAG+AGG | + | chr3.3:83517992-83518011 | MS.gene013047:CDS | 55.0% |
| TCGGATCGCTACGTGCTGCG+TGG | + | chr3.3:83518046-83518065 | MS.gene013047:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83517859 | 83520236 | 83517859 | ID=MS.gene013047 |
| chr3.3 | mRNA | 83517859 | 83520236 | 83517859 | ID=MS.gene013047.t1;Parent=MS.gene013047 |
| chr3.3 | exon | 83517859 | 83518356 | 83517859 | ID=MS.gene013047.t1.exon1;Parent=MS.gene013047.t1 |
| chr3.3 | CDS | 83517859 | 83518356 | 83517859 | ID=cds.MS.gene013047.t1;Parent=MS.gene013047.t1 |
| chr3.3 | exon | 83518439 | 83518561 | 83518439 | ID=MS.gene013047.t1.exon2;Parent=MS.gene013047.t1 |
| chr3.3 | CDS | 83518439 | 83518561 | 83518439 | ID=cds.MS.gene013047.t1;Parent=MS.gene013047.t1 |
| chr3.3 | exon | 83519958 | 83520074 | 83519958 | ID=MS.gene013047.t1.exon3;Parent=MS.gene013047.t1 |
| chr3.3 | CDS | 83519958 | 83520074 | 83519958 | ID=cds.MS.gene013047.t1;Parent=MS.gene013047.t1 |
| chr3.3 | exon | 83520216 | 83520236 | 83520216 | ID=MS.gene013047.t1.exon4;Parent=MS.gene013047.t1 |
| chr3.3 | CDS | 83520216 | 83520236 | 83520216 | ID=cds.MS.gene013047.t1;Parent=MS.gene013047.t1 |
| Gene Sequence |
| Protein sequence |
