Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050079.t1 | XP_003615160.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 8.80E-138 | 499.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050079.t1 | P42653 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 8.4e-137 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050079.t1 | B7FIY3 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 6.4e-138 | 499.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050079 | MS.gene64150 | 0.842694 | 2.21E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013133 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene83541 | PPI |
| MS.gene48435 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene64150 | PPI |
| MS.gene050079 | MS.gene38593 | PPI |
| MS.gene55400 | MS.gene050079 | PPI |
| MS.gene055488 | MS.gene050079 | PPI |
| MS.gene020411 | MS.gene050079 | PPI |
| MS.gene71392 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene043907 | PPI |
| MS.gene050079 | MS.gene010393 | PPI |
| MS.gene006850 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene047668 | PPI |
| MS.gene035837 | MS.gene050079 | PPI |
| MS.gene066779 | MS.gene050079 | PPI |
| MS.gene013047 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene53188 | PPI |
| MS.gene010180 | MS.gene050079 | PPI |
| MS.gene043514 | MS.gene050079 | PPI |
| MS.gene54847 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene010179 | PPI |
| MS.gene56475 | MS.gene050079 | PPI |
| MS.gene55401 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene054662 | PPI |
| MS.gene050079 | MS.gene010180 | PPI |
| MS.gene050079 | MS.gene028807 | PPI |
| MS.gene041125 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene86409 | PPI |
| MS.gene067412 | MS.gene050079 | PPI |
| MS.gene050079 | MS.gene052176 | PPI |
| MS.gene050079 | MS.gene31370 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050079.t1 | MTR_5g064580 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 532 |
| MS.gene050079.t1 | MTR_3g099380 | 90.385 | 260 | 25 | 0 | 1 | 260 | 1 | 260 | 1.18e-176 | 486 |
| MS.gene050079.t1 | MTR_3g099380 | 89.655 | 203 | 21 | 0 | 1 | 203 | 1 | 203 | 2.48e-135 | 380 |
| MS.gene050079.t1 | MTR_3g100620 | 75.949 | 237 | 56 | 1 | 8 | 243 | 11 | 247 | 2.51e-135 | 382 |
| MS.gene050079.t1 | MTR_2g091225 | 72.016 | 243 | 66 | 1 | 8 | 250 | 7 | 247 | 9.18e-129 | 365 |
| MS.gene050079.t1 | MTR_8g086270 | 71.605 | 243 | 67 | 1 | 8 | 250 | 7 | 247 | 4.64e-126 | 358 |
| MS.gene050079.t1 | MTR_2g015980 | 69.020 | 255 | 72 | 3 | 6 | 256 | 3 | 254 | 5.52e-126 | 358 |
| MS.gene050079.t1 | MTR_5g044160 | 70.325 | 246 | 71 | 1 | 3 | 248 | 2 | 245 | 2.16e-124 | 354 |
| MS.gene050079.t1 | MTR_4g083060 | 68.898 | 254 | 72 | 2 | 8 | 256 | 7 | 258 | 7.59e-124 | 354 |
| MS.gene050079.t1 | MTR_2g076960 | 66.154 | 260 | 85 | 2 | 1 | 259 | 1 | 258 | 1.07e-123 | 353 |
| MS.gene050079.t1 | MTR_2g091225 | 70.222 | 225 | 65 | 1 | 26 | 250 | 2 | 224 | 5.56e-116 | 332 |
| MS.gene050079.t1 | MTR_0137s0020 | 58.403 | 238 | 93 | 4 | 8 | 243 | 11 | 244 | 1.69e-91 | 270 |
| MS.gene050079.t1 | MTR_3g014060 | 57.983 | 238 | 94 | 4 | 8 | 243 | 11 | 244 | 1.11e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050079.t1 | AT1G78300 | 90.157 | 254 | 24 | 1 | 8 | 260 | 5 | 258 | 1.70e-169 | 468 |
| MS.gene050079.t1 | AT1G35160 | 85.985 | 264 | 33 | 2 | 1 | 260 | 1 | 264 | 1.79e-167 | 464 |
| MS.gene050079.t1 | AT4G09000 | 88.933 | 253 | 26 | 1 | 1 | 251 | 1 | 253 | 2.43e-166 | 461 |
| MS.gene050079.t1 | AT1G35160 | 77.740 | 292 | 33 | 3 | 1 | 260 | 1 | 292 | 3.38e-161 | 449 |
| MS.gene050079.t1 | AT4G09000 | 89.344 | 244 | 24 | 1 | 1 | 242 | 1 | 244 | 2.60e-160 | 447 |
| MS.gene050079.t1 | AT5G38480 | 81.496 | 254 | 46 | 1 | 6 | 258 | 2 | 255 | 3.17e-154 | 429 |
| MS.gene050079.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.29e-152 | 426 |
| MS.gene050079.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.29e-152 | 426 |
| MS.gene050079.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 9.76e-152 | 423 |
| MS.gene050079.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 9.76e-152 | 423 |
| MS.gene050079.t1 | AT5G10450 | 79.508 | 244 | 49 | 1 | 4 | 246 | 3 | 246 | 3.57e-145 | 406 |
| MS.gene050079.t1 | AT5G10450 | 79.668 | 241 | 48 | 1 | 4 | 243 | 3 | 243 | 8.26e-145 | 405 |
| MS.gene050079.t1 | AT5G10450 | 77.510 | 249 | 55 | 1 | 4 | 251 | 3 | 251 | 8.57e-145 | 406 |
| MS.gene050079.t1 | AT5G10450 | 80.000 | 240 | 47 | 1 | 4 | 242 | 3 | 242 | 5.42e-144 | 404 |
| MS.gene050079.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.21e-143 | 402 |
| MS.gene050079.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.21e-143 | 402 |
| MS.gene050079.t1 | AT5G65430 | 78.138 | 247 | 52 | 2 | 1 | 246 | 1 | 246 | 2.10e-142 | 399 |
| MS.gene050079.t1 | AT5G65430 | 78.279 | 244 | 51 | 2 | 1 | 243 | 1 | 243 | 5.92e-142 | 398 |
| MS.gene050079.t1 | AT5G65430 | 78.601 | 243 | 50 | 2 | 1 | 242 | 1 | 242 | 2.72e-141 | 397 |
| MS.gene050079.t1 | AT1G26480 | 74.180 | 244 | 60 | 3 | 8 | 250 | 10 | 251 | 7.27e-129 | 366 |
| MS.gene050079.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.23e-122 | 349 |
| MS.gene050079.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.25e-122 | 349 |
| MS.gene050079.t1 | AT2G42590 | 70.833 | 240 | 68 | 1 | 8 | 247 | 7 | 244 | 8.79e-122 | 348 |
| MS.gene050079.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 3.66e-121 | 346 |
| MS.gene050079.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 4.58e-121 | 346 |
| MS.gene050079.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.51e-117 | 335 |
| MS.gene050079.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.51e-117 | 335 |
| MS.gene050079.t1 | AT1G22300 | 69.874 | 239 | 70 | 1 | 8 | 246 | 5 | 241 | 1.34e-115 | 332 |
| MS.gene050079.t1 | AT1G78220 | 48.927 | 233 | 116 | 2 | 8 | 239 | 5 | 235 | 1.26e-73 | 225 |
| MS.gene050079.t1 | AT1G22290 | 45.933 | 209 | 91 | 6 | 12 | 217 | 9 | 198 | 4.49e-48 | 159 |
| MS.gene050079.t1 | AT1G22290 | 45.631 | 206 | 90 | 6 | 12 | 214 | 9 | 195 | 6.16e-48 | 157 |
| MS.gene050079.t1 | AT2G10450 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 7.67e-18 | 76.3 |
Find 54 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCTGGTGATTCTA+AGG | 0.228252 | 5.4:+50351244 | MS.gene050079:CDS |
| AAGAATACCGTTACAGATAT+TGG | 0.234430 | 5.4:-50351192 | None:intergenic |
| TACTGCTCATCGGCGCCTTT+TGG | 0.244944 | 5.4:-50353540 | None:intergenic |
| TTGATTCCTTCTGCTGCTTC+TGG | 0.276388 | 5.4:+50351233 | MS.gene050079:CDS |
| CGATGAGGCTATTGCTGAAT+TGG | 0.295305 | 5.4:+50353299 | MS.gene050079:CDS |
| CGAAGAGATGGTCGATTTCA+TGG | 0.314624 | 5.4:+50350965 | MS.gene050079:CDS |
| TGCTTGTGGCCTTGCAAAAC+AGG | 0.353700 | 5.4:+50352835 | MS.gene050079:CDS |
| GATAATCACCTTTCATCTTA+AGG | 0.367061 | 5.4:-50351274 | None:intergenic |
| TTGTTTGGGTTTCAGGATGA+TGG | 0.406709 | 5.4:+50353492 | MS.gene050079:intron |
| TTCGTAACGTTCGGCTTGTT+CGG | 0.410967 | 5.4:-50350946 | None:intergenic |
| AGAGCAAGACCAAGCCTGAT+TGG | 0.420669 | 5.4:-50352767 | None:intergenic |
| TCCGTGATAACCTCACCCTT+TGG | 0.424479 | 5.4:+50353373 | MS.gene050079:CDS |
| GACCATCTCTTCGTAACGTT+CGG | 0.437327 | 5.4:-50350955 | None:intergenic |
| AGATGAAAGGTGATTATCAT+AGG | 0.447012 | 5.4:+50351279 | MS.gene050079:CDS |
| TACCACCAACTCACCCAATC+AGG | 0.450085 | 5.4:+50352753 | MS.gene050079:CDS |
| GCAAGGCCACAAGCACGATC+AGG | 0.466255 | 5.4:-50352827 | None:intergenic |
| ATTGCTGAATTGGATACATT+GGG | 0.469687 | 5.4:+50353309 | MS.gene050079:CDS |
| GCTTTCTTCCTTCTGTTCGA+TGG | 0.473046 | 5.4:-50351105 | None:intergenic |
| TACTGCTTATAAAGCTGCTC+AGG | 0.475422 | 5.4:+50351358 | MS.gene050079:CDS |
| ATCAAAGAAGCCGCACCAAA+AGG | 0.476807 | 5.4:+50353525 | MS.gene050079:CDS |
| GAGCAAGACCAAGCCTGATT+GGG | 0.484933 | 5.4:-50352766 | None:intergenic |
| TATTGCTGAATTGGATACAT+TGG | 0.488219 | 5.4:+50353308 | MS.gene050079:CDS |
| ACGTGAAGAGTTCGTCTACA+TGG | 0.496790 | 5.4:+50350914 | MS.gene050079:CDS |
| TGGTGTTGGTGCGGTTGCCA+TGG | 0.499485 | 5.4:-50350892 | None:intergenic |
| GGTGAGTTCTTCGCTTTCGA+CGG | 0.507397 | 5.4:-50351003 | None:intergenic |
| TCGGAGCAAGACGTGCTTCG+TGG | 0.514368 | 5.4:+50351069 | MS.gene050079:CDS |
| AACTCTCCTGATCGTGCTTG+TGG | 0.523777 | 5.4:+50352821 | MS.gene050079:CDS |
| CCTTTGGACCTCTGACATGC+AGG | 0.533382 | 5.4:+50353389 | MS.gene050079:CDS |
| TTCTTCGCTTTCGACGGCGG+CGG | 0.538091 | 5.4:-50350997 | None:intergenic |
| CCAACTCACCCAATCAGGCT+TGG | 0.548958 | 5.4:+50352758 | MS.gene050079:CDS |
| CATCTCTTCCATCGAACAGA+AGG | 0.549390 | 5.4:+50351097 | MS.gene050079:CDS |
| CCTGCATGTCAGAGGTCCAA+AGG | 0.556945 | 5.4:-50353389 | None:intergenic |
| CTGCATGTCAGAGGTCCAAA+GGG | 0.558806 | 5.4:-50353388 | None:intergenic |
| AGCCTGATTGGGTGAGTTGG+TGG | 0.564969 | 5.4:-50352755 | None:intergenic |
| TGAATTGGATACATTGGGAG+AGG | 0.566946 | 5.4:+50353314 | MS.gene050079:CDS |
| CTCTTCACGTGGTGTTGGTG+CGG | 0.568646 | 5.4:-50350901 | None:intergenic |
| TCCAAAGGGTGAGGTTATCA+CGG | 0.578031 | 5.4:-50353374 | None:intergenic |
| ACGAACTCTTCACGTGGTGT+TGG | 0.578137 | 5.4:-50350906 | None:intergenic |
| CCAAGCCTGATTGGGTGAGT+TGG | 0.579199 | 5.4:-50352758 | None:intergenic |
| GAGTTCTTCGCTTTCGACGG+CGG | 0.587801 | 5.4:-50351000 | None:intergenic |
| GAACTTTCCAATATCTGTAA+CGG | 0.597556 | 5.4:+50351185 | MS.gene050079:CDS |
| TGTCAGAGGTCCAAAGGGTG+AGG | 0.606809 | 5.4:-50353383 | None:intergenic |
| AGATCTGTAATCACGAATCA+CGG | 0.615306 | 5.4:-50351150 | None:intergenic |
| GAATCACCAGAAGCAGCAGA+AGG | 0.617542 | 5.4:-50351239 | None:intergenic |
| TATCTTGCTGAGTTTAAGAG+TGG | 0.621733 | 5.4:+50351302 | MS.gene050079:CDS |
| AGCCGAACGTTACGAAGAGA+TGG | 0.627906 | 5.4:+50350953 | MS.gene050079:CDS |
| ACGATATGATTACTGCTCAT+CGG | 0.628913 | 5.4:-50353550 | None:intergenic |
| ATATCATACCTGCATGTCAG+AGG | 0.643750 | 5.4:-50353397 | None:intergenic |
| ATTGGGAGAGGAATCATACA+AGG | 0.653137 | 5.4:+50353326 | MS.gene050079:CDS |
| GAGGAGGTTACGTTCTTCGA+CGG | 0.656962 | 5.4:-50351024 | None:intergenic |
| TAACATGTTCATCGTTACCA+CGG | 0.672519 | 5.4:-50351127 | None:intergenic |
| GAACAGAAGGAAGAAAGCCG+TGG | 0.676297 | 5.4:+50351110 | MS.gene050079:CDS |
| TATTCATTAGGCTTTCGATG+AGG | 0.689894 | 5.4:+50353284 | MS.gene050079:intron |
| ATGTAGACGAACTCTTCACG+TGG | 0.738511 | 5.4:-50350912 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAATTAGGTTAAAATAA+TGG | + | chr5.4:50351742-50351761 | MS.gene050079:intron | 15.0% |
| !!! | AGAATTAAAATCTACTTTTT+TGG | - | chr5.4:50352155-50352174 | None:intergenic | 15.0% |
| !!! | ATTTTGGTTTATATTTTGTT+TGG | + | chr5.4:50353477-50353496 | MS.gene050079:intron | 15.0% |
| !!! | TAATATGATTTGTGTTAATT+AGG | + | chr5.4:50351630-50351649 | MS.gene050079:intron | 15.0% |
| !!! | TTTTGGTTTATATTTTGTTT+GGG | + | chr5.4:50353478-50353497 | MS.gene050079:intron | 15.0% |
| !! | AAAAATTAAATGTTGCACTT+TGG | + | chr5.4:50352386-50352405 | MS.gene050079:intron | 20.0% |
| !! | AAAATGAAAGTCTTAAATGA+TGG | + | chr5.4:50351829-50351848 | MS.gene050079:intron | 20.0% |
| !! | AAATTCACATCAACATAAAA+AGG | - | chr5.4:50353136-50353155 | None:intergenic | 20.0% |
| !! | ACTACAAACTTTAATTGAAA+AGG | - | chr5.4:50352929-50352948 | None:intergenic | 20.0% |
| !! | GCAATATTTCAAACAAATAA+TGG | - | chr5.4:50351540-50351559 | None:intergenic | 20.0% |
| !! | TAATGAATATAGAAAAGAAC+AGG | - | chr5.4:50353273-50353292 | None:intergenic | 20.0% |
| !!! | ACATGATTTTTATTTTGGAT+CGG | + | chr5.4:50352502-50352521 | MS.gene050079:intron | 20.0% |
| !!! | CATATTCTGTTTATTGATTT+TGG | + | chr5.4:50353461-50353480 | MS.gene050079:intron | 20.0% |
| !!! | GATTTGATGATTTCTTAATT+AGG | + | chr5.4:50351730-50351749 | MS.gene050079:intron | 20.0% |
| !!! | TAAAATCTACTTTTTTGGTT+CGG | - | chr5.4:50352150-50352169 | None:intergenic | 20.0% |
| !!! | TGTTCTTTTCTATATTCATT+AGG | + | chr5.4:50353272-50353291 | MS.gene050079:intron | 20.0% |
| !!! | TTTTCAATTAAAGTTTGTAG+TGG | + | chr5.4:50352928-50352947 | MS.gene050079:intron | 20.0% |
| ! | AATTTCATTAACGTGTTTGT+GGG | + | chr5.4:50353090-50353109 | MS.gene050079:intron | 25.0% |
| ! | CAAAATAAACCGCATATATT+TGG | + | chr5.4:50352426-50352445 | MS.gene050079:intron | 25.0% |
| ! | CAAACACATCCAAAAATATT+CGG | - | chr5.4:50352054-50352073 | None:intergenic | 25.0% |
| ! | GAGATCTAACGTTATATTTA+TGG | + | chr5.4:50351396-50351415 | MS.gene050079:intron | 25.0% |
| ! | TAATTTCATTAACGTGTTTG+TGG | + | chr5.4:50353089-50353108 | MS.gene050079:intron | 25.0% |
| ! | TATTCTAGATACCGAATAAT+GGG | + | chr5.4:50352862-50352881 | MS.gene050079:intron | 25.0% |
| ! | TCCAAAATAAAAATCATGTG+CGG | - | chr5.4:50352501-50352520 | None:intergenic | 25.0% |
| ! | TTTAGGTAAGGGAAATTTAA+CGG | + | chr5.4:50351574-50351593 | MS.gene050079:intron | 25.0% |
| !! | CAAATATATGCGGTTTATTT+TGG | - | chr5.4:50352428-50352447 | None:intergenic | 25.0% |
| !! | TATGTTGATGTGAATTTGTT+AGG | + | chr5.4:50353139-50353158 | MS.gene050079:intron | 25.0% |
| !! | TGATTCTGTTCTGTTATTTA+TGG | + | chr5.4:50353227-50353246 | MS.gene050079:intron | 25.0% |
| !! | TTTCAAATGAGTTGAATGTA+GGG | + | chr5.4:50351787-50351806 | MS.gene050079:intron | 25.0% |
| !! | TTTTCAATTAAAGTCTGTAG+TGG | + | chr5.4:50352989-50353008 | MS.gene050079:intron | 25.0% |
| !!! | CAAAAATATTCGGTTTTTTG+CGG | - | chr5.4:50352044-50352063 | None:intergenic | 25.0% |
| !!! | TGTAGGGTATTGTTTATTTT+TGG | + | chr5.4:50351803-50351822 | MS.gene050079:intron | 25.0% |
| !!! | TTATATTTTGTTTGGGTTTC+AGG | + | chr5.4:50353485-50353504 | MS.gene050079:intron | 25.0% |
| !!! | TTTTCAAATGAGTTGAATGT+AGG | + | chr5.4:50351786-50351805 | MS.gene050079:intron | 25.0% |
| AAGAATACCGTTACAGATAT+TGG | - | chr5.4:50351195-50351214 | None:intergenic | 30.0% | |
| AATAAAAATCATGTGCGGTT+CGG | - | chr5.4:50352496-50352515 | None:intergenic | 30.0% | |
| AGATGAAAGGTGATTATCAT+AGG | + | chr5.4:50351279-50351298 | MS.gene050079:CDS | 30.0% | |
| ATTGCTGAATTGGATACATT+GGG | + | chr5.4:50353309-50353328 | MS.gene050079:CDS | 30.0% | |
| CACATGCATAGAGAAATAAT+AGG | - | chr5.4:50352348-50352367 | None:intergenic | 30.0% | |
| GAACTTTCCAATATCTGTAA+CGG | + | chr5.4:50351185-50351204 | MS.gene050079:CDS | 30.0% | |
| GATAATCACCTTTCATCTTA+AGG | - | chr5.4:50351277-50351296 | None:intergenic | 30.0% | |
| GTATTCTAGATACCGAATAA+TGG | + | chr5.4:50352861-50352880 | MS.gene050079:intron | 30.0% | |
| TAAACCGCATATATTTGGAT+CGG | + | chr5.4:50352431-50352450 | MS.gene050079:intron | 30.0% | |
| TATTGCTGAATTGGATACAT+TGG | + | chr5.4:50353308-50353327 | MS.gene050079:CDS | 30.0% | |
| TTAGATCTCAGAGAAAAAGA+TGG | - | chr5.4:50351385-50351404 | None:intergenic | 30.0% | |
| ! | CGCAAAAAACCGAATATTTT+TGG | + | chr5.4:50352042-50352061 | MS.gene050079:intron | 30.0% |
| ! | CTATAACTGACTTTAGGTAA+GGG | + | chr5.4:50351563-50351582 | MS.gene050079:intron | 30.0% |
| ! | GTTTTCTACCTTAAGATGAA+AGG | + | chr5.4:50351266-50351285 | MS.gene050079:CDS | 30.0% |
| ! | TCTATAACTGACTTTAGGTA+AGG | + | chr5.4:50351562-50351581 | MS.gene050079:intron | 30.0% |
| ! | TTTAACGGAGTTTTTGTGTT+TGG | + | chr5.4:50351589-50351608 | MS.gene050079:intron | 30.0% |
| !! | ACCGCACATGATTTTTATTT+TGG | + | chr5.4:50352497-50352516 | MS.gene050079:intron | 30.0% |
| !! | TTTAATTTGACTCTCCTTGT+AGG | + | chr5.4:50352712-50352731 | MS.gene050079:intron | 30.0% |
| !! | TTTTGAAAAACCGCTATGAT+CGG | + | chr5.4:50352082-50352101 | MS.gene050079:intron | 30.0% |
| !!! | ATATGCGGTTTATTTTGGAT+CGG | - | chr5.4:50352423-50352442 | None:intergenic | 30.0% |
| !!! | CGAATATTTTTGGATGTGTT+TGG | + | chr5.4:50352052-50352071 | MS.gene050079:intron | 30.0% |
| !!! | GGTTTTATTTTGGATCAGTT+TGG | - | chr5.4:50351995-50352014 | None:intergenic | 30.0% |
| !!! | GTTTATTTTGGATCGGTTTT+TGG | - | chr5.4:50352416-50352435 | None:intergenic | 30.0% |
| AATGGGAGATGATGTTCATT+TGG | + | chr5.4:50352879-50352898 | MS.gene050079:intron | 35.0% | |
| AGATCTGTAATCACGAATCA+CGG | - | chr5.4:50351153-50351172 | None:intergenic | 35.0% | |
| CGCAAATCTTCAAATCCAAA+CGG | - | chr5.4:50352683-50352702 | None:intergenic | 35.0% | |
| GAACATCATCTCCCATTATT+CGG | - | chr5.4:50352876-50352895 | None:intergenic | 35.0% | |
| TAACATGTTCATCGTTACCA+CGG | - | chr5.4:50351130-50351149 | None:intergenic | 35.0% | |
| TATCTTGCTGAGTTTAAGAG+TGG | + | chr5.4:50351302-50351321 | MS.gene050079:CDS | 35.0% | |
| TATTCATTAGGCTTTCGATG+AGG | + | chr5.4:50353284-50353303 | MS.gene050079:intron | 35.0% | |
| TTGAACATAATCATGTGCGT+CGG | - | chr5.4:50352609-50352628 | None:intergenic | 35.0% | |
| ! | GAATACTAACCTGTTTTGCA+AGG | - | chr5.4:50352847-50352866 | None:intergenic | 35.0% |
| ! | TGCGATCTATAACTGACTTT+AGG | + | chr5.4:50351557-50351576 | MS.gene050079:intron | 35.0% |
| ! | TTTGCGGTTTTCGGTTTTTT+TGG | - | chr5.4:50352028-50352047 | None:intergenic | 35.0% |
| !! | ATGCTACATCAAACTTGTTG+AGG | - | chr5.4:50353202-50353221 | None:intergenic | 35.0% |
| !! | GATGTGAATTTGTTAGGTTC+TGG | + | chr5.4:50353145-50353164 | MS.gene050079:intron | 35.0% |
| !!! | ATTCGGTTTTTTGCGGTTTT+CGG | - | chr5.4:50352037-50352056 | None:intergenic | 35.0% |
| !!! | GGTTTTCGGTTTTTTTGGAT+CGG | - | chr5.4:50352023-50352042 | None:intergenic | 35.0% |
| !!! | TCTACTTTTTTGGTTCGGTT+CGG | - | chr5.4:50352145-50352164 | None:intergenic | 35.0% |
| AAAAACCGCTATGATCGGTT+CGG | + | chr5.4:50352087-50352106 | MS.gene050079:intron | 40.0% | |
| AGAGTTAGCAATGTCCTACA+AGG | - | chr5.4:50352729-50352748 | None:intergenic | 40.0% | |
| ATATCATACCTGCATGTCAG+AGG | - | chr5.4:50353400-50353419 | None:intergenic | 40.0% | |
| ATATTTGGATCGGATCGGAT+CGG | + | chr5.4:50352441-50352460 | MS.gene050079:intron | 40.0% | |
| ATTGGGAGAGGAATCATACA+AGG | + | chr5.4:50353326-50353345 | MS.gene050079:CDS | 40.0% | |
| CGATCCGATCCAAATATATG+CGG | - | chr5.4:50352438-50352457 | None:intergenic | 40.0% | |
| CGCATATATTTGGATCGGAT+CGG | + | chr5.4:50352436-50352455 | MS.gene050079:intron | 40.0% | |
| TACTGCTTATAAAGCTGCTC+AGG | + | chr5.4:50351358-50351377 | MS.gene050079:CDS | 40.0% | |
| TGAATTGGATACATTGGGAG+AGG | + | chr5.4:50353314-50353333 | MS.gene050079:CDS | 40.0% | |
| TGACACCTCTGATCAAAGTA+GGG | + | chr5.4:50351959-50351978 | MS.gene050079:intron | 40.0% | |
| TTGACACCTCTGATCAAAGT+AGG | + | chr5.4:50351958-50351977 | MS.gene050079:intron | 40.0% | |
| ! | GTGTTATTATTGCGTCCGTT+TGG | + | chr5.4:50352665-50352684 | MS.gene050079:intron | 40.0% |
| ! | TTGTTTGGGTTTCAGGATGA+TGG | + | chr5.4:50353492-50353511 | MS.gene050079:intron | 40.0% |
| !!! | ATCGGCTTGCGGTTTTATTT+TGG | - | chr5.4:50352005-50352024 | None:intergenic | 40.0% |
| !!! | GGTTTGGTTCGGTTTTGAAA+AGG | - | chr5.4:50352124-50352143 | None:intergenic | 40.0% |
| !!! | TTTTTTGGTTCGGTTCGGTT+TGG | - | chr5.4:50352140-50352159 | None:intergenic | 40.0% |
| AACACCCCTACTTTGATCAG+AGG | - | chr5.4:50351967-50351986 | None:intergenic | 45.0% | |
| ACGTGAAGAGTTCGTCTACA+TGG | + | chr5.4:50350914-50350933 | MS.gene050079:CDS | 45.0% | |
| ATCAAAGAAGCCGCACCAAA+AGG | + | chr5.4:50353525-50353544 | MS.gene050079:CDS | 45.0% | |
| ATGTAGACGAACTCTTCACG+TGG | - | chr5.4:50350915-50350934 | None:intergenic | 45.0% | |
| CATCTCTTCCATCGAACAGA+AGG | + | chr5.4:50351097-50351116 | MS.gene050079:CDS | 45.0% | |
| CGATGAGGCTATTGCTGAAT+TGG | + | chr5.4:50353299-50353318 | MS.gene050079:CDS | 45.0% | |
| GAAATCCGAACCGATCATAG+CGG | - | chr5.4:50352095-50352114 | None:intergenic | 45.0% | |
| GACACCTCTGATCAAAGTAG+GGG | + | chr5.4:50351960-50351979 | MS.gene050079:intron | 45.0% | |
| GACCATCTCTTCGTAACGTT+CGG | - | chr5.4:50350958-50350977 | None:intergenic | 45.0% | |
| GCTTTCTTCCTTCTGTTCGA+TGG | - | chr5.4:50351108-50351127 | None:intergenic | 45.0% | |
| GTCGCCTACAAAAACGTCAT+CGG | + | chr5.4:50351050-50351069 | MS.gene050079:CDS | 45.0% | |
| TCCAAAGGGTGAGGTTATCA+CGG | - | chr5.4:50353377-50353396 | None:intergenic | 45.0% | |
| ! | CGAAGAGATGGTCGATTTCA+TGG | + | chr5.4:50350965-50350984 | MS.gene050079:CDS | 45.0% |
| ! | GATGACGTTTTTGTAGGCGA+CGG | - | chr5.4:50351051-50351070 | None:intergenic | 45.0% |
| ! | TGCTCCGATGACGTTTTTGT+AGG | - | chr5.4:50351057-50351076 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTGGTGATTCTA+AGG | + | chr5.4:50351244-50351263 | MS.gene050079:CDS | 45.0% |
| ! | TTCGTAACGTTCGGCTTGTT+CGG | - | chr5.4:50350949-50350968 | None:intergenic | 45.0% |
| ! | TTGATTCCTTCTGCTGCTTC+TGG | + | chr5.4:50351233-50351252 | MS.gene050079:CDS | 45.0% |
| !! | AAATCATGTGCGGTTCGGTT+CGG | - | chr5.4:50352491-50352510 | None:intergenic | 45.0% |
| !!! | GGTTTTTTTGGATCGGCTTG+CGG | - | chr5.4:50352016-50352035 | None:intergenic | 45.0% |
| !!! | ATTCTTATTTATTATTTTAT+TGG | + | chr5.4:50352170-50352189 | MS.gene050079:intron | 5.0% |
| AACTCTCCTGATCGTGCTTG+TGG | + | chr5.4:50352821-50352840 | MS.gene050079:CDS | 50.0% | |
| ACCAGACACGCCTTTGATCT+AGG | - | chr5.4:50352573-50352592 | None:intergenic | 50.0% | |
| ACGAACTCTTCACGTGGTGT+TGG | - | chr5.4:50350909-50350928 | None:intergenic | 50.0% | |
| AGAGCAAGACCAAGCCTGAT+TGG | - | chr5.4:50352770-50352789 | None:intergenic | 50.0% | |
| AGCCGAACGTTACGAAGAGA+TGG | + | chr5.4:50350953-50350972 | MS.gene050079:CDS | 50.0% | |
| CAGACACGCCTTTGATCTAG+GGG | - | chr5.4:50352571-50352590 | None:intergenic | 50.0% | |
| CCAGACACGCCTTTGATCTA+GGG | - | chr5.4:50352572-50352591 | None:intergenic | 50.0% | |
| CCCTCAAAACCGATCCAAAC+CGG | + | chr5.4:50352535-50352554 | MS.gene050079:intron | 50.0% | |
| CTGCATGTCAGAGGTCCAAA+GGG | - | chr5.4:50353391-50353410 | None:intergenic | 50.0% | |
| GAACAGAAGGAAGAAAGCCG+TGG | + | chr5.4:50351110-50351129 | MS.gene050079:CDS | 50.0% | |
| GAATCACCAGAAGCAGCAGA+AGG | - | chr5.4:50351242-50351261 | None:intergenic | 50.0% | |
| GAGCAAGACCAAGCCTGATT+GGG | - | chr5.4:50352769-50352788 | None:intergenic | 50.0% | |
| GAGGAGGTTACGTTCTTCGA+CGG | - | chr5.4:50351027-50351046 | None:intergenic | 50.0% | |
| GGTGAGTTCTTCGCTTTCGA+CGG | - | chr5.4:50351006-50351025 | None:intergenic | 50.0% | |
| TACCACCAACTCACCCAATC+AGG | + | chr5.4:50352753-50352772 | MS.gene050079:CDS | 50.0% | |
| TCCGTGATAACCTCACCCTT+TGG | + | chr5.4:50353373-50353392 | MS.gene050079:CDS | 50.0% | |
| ! | TGCTTGTGGCCTTGCAAAAC+AGG | + | chr5.4:50352835-50352854 | MS.gene050079:CDS | 50.0% |
| ! | TGTGGGAGCTTTAGTGCAGT+GGG | + | chr5.4:50353107-50353126 | MS.gene050079:intron | 50.0% |
| ! | TTGTGGGAGCTTTAGTGCAG+TGG | + | chr5.4:50353106-50353125 | MS.gene050079:intron | 50.0% |
| !! | CTTTGATCTAGGGGTGTTCG+CGG | - | chr5.4:50352562-50352581 | None:intergenic | 50.0% |
| !! | TGGTTCGGTTCGGTTTGGTT+CGG | - | chr5.4:50352135-50352154 | None:intergenic | 50.0% |
| !!! | CCGGTTTGGATCGGTTTTGA+GGG | - | chr5.4:50352538-50352557 | None:intergenic | 50.0% |
| !!! | TCCGGTTTGGATCGGTTTTG+AGG | - | chr5.4:50352539-50352558 | None:intergenic | 50.0% |
| CCAACTCACCCAATCAGGCT+TGG | + | chr5.4:50352758-50352777 | MS.gene050079:CDS | 55.0% | |
| CCAAGCCTGATTGGGTGAGT+TGG | - | chr5.4:50352761-50352780 | None:intergenic | 55.0% | |
| CCTGCATGTCAGAGGTCCAA+AGG | - | chr5.4:50353392-50353411 | None:intergenic | 55.0% | |
| CCTTTGGACCTCTGACATGC+AGG | + | chr5.4:50353389-50353408 | MS.gene050079:CDS | 55.0% | |
| CGCGAACACCCCTAGATCAA+AGG | + | chr5.4:50352560-50352579 | MS.gene050079:intron | 55.0% | |
| GAGTTCTTCGCTTTCGACGG+CGG | - | chr5.4:50351003-50351022 | None:intergenic | 55.0% | |
| TGTCAGAGGTCCAAAGGGTG+AGG | - | chr5.4:50353386-50353405 | None:intergenic | 55.0% | |
| ! | AGCCTGATTGGGTGAGTTGG+TGG | - | chr5.4:50352758-50352777 | None:intergenic | 55.0% |
| ! | AGGCGTGTCTGGTTTCTGAC+AGG | + | chr5.4:50352580-50352599 | MS.gene050079:intron | 55.0% |
| ! | CCCTAGATCAAAGGCGTGTC+TGG | + | chr5.4:50352569-50352588 | MS.gene050079:intron | 55.0% |
| ! | CGTTTTTGTAGGCGACGGAG+AGG | - | chr5.4:50351046-50351065 | None:intergenic | 55.0% |
| ! | GCGTGTCTGGTTTCTGACAG+GGG | + | chr5.4:50352582-50352601 | MS.gene050079:intron | 55.0% |
| ! | GGCGTGTCTGGTTTCTGACA+GGG | + | chr5.4:50352581-50352600 | MS.gene050079:intron | 55.0% |
| ! | TACTGCTCATCGGCGCCTTT+TGG | - | chr5.4:50353543-50353562 | None:intergenic | 55.0% |
| ! | TTTTGTAGGCGACGGAGAGG+AGG | - | chr5.4:50351043-50351062 | None:intergenic | 55.0% |
| !! | ATGTGCGGTTCGGTTCGGTT+TGG | - | chr5.4:50352486-50352505 | None:intergenic | 55.0% |
| !! | CTCTTCACGTGGTGTTGGTG+CGG | - | chr5.4:50350904-50350923 | None:intergenic | 55.0% |
| GCAAGGCCACAAGCACGATC+AGG | - | chr5.4:50352830-50352849 | None:intergenic | 60.0% | |
| TCGGAGCAAGACGTGCTTCG+TGG | + | chr5.4:50351069-50351088 | MS.gene050079:CDS | 60.0% | |
| TTCTTCGCTTTCGACGGCGG+CGG | - | chr5.4:50351000-50351019 | None:intergenic | 60.0% | |
| ! | CTCATCGGCGCCTTTTGGTG+CGG | - | chr5.4:50353538-50353557 | None:intergenic | 60.0% |
| !! | ATCTAGGGGTGTTCGCGGTC+CGG | - | chr5.4:50352557-50352576 | None:intergenic | 60.0% |
| !! | GTTCGCGGTCCGGTTTGGAT+CGG | - | chr5.4:50352547-50352566 | None:intergenic | 60.0% |
| ! | GGGGTGTTCGCGGTCCGGTT+TGG | - | chr5.4:50352552-50352571 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 50350894 | 50353563 | 50350894 | ID=MS.gene050079 |
| chr5.4 | mRNA | 50350894 | 50353563 | 50350894 | ID=MS.gene050079.t1;Parent=MS.gene050079 |
| chr5.4 | exon | 50350894 | 50351379 | 50350894 | ID=MS.gene050079.t1.exon1;Parent=MS.gene050079.t1 |
| chr5.4 | CDS | 50350894 | 50351379 | 50350894 | ID=cds.MS.gene050079.t1;Parent=MS.gene050079.t1 |
| chr5.4 | exon | 50352734 | 50352856 | 50352734 | ID=MS.gene050079.t1.exon2;Parent=MS.gene050079.t1 |
| chr5.4 | CDS | 50352734 | 50352856 | 50352734 | ID=cds.MS.gene050079.t1;Parent=MS.gene050079.t1 |
| chr5.4 | exon | 50353294 | 50353410 | 50353294 | ID=MS.gene050079.t1.exon3;Parent=MS.gene050079.t1 |
| chr5.4 | CDS | 50353294 | 50353410 | 50353294 | ID=cds.MS.gene050079.t1;Parent=MS.gene050079.t1 |
| chr5.4 | exon | 50353507 | 50353563 | 50353507 | ID=MS.gene050079.t1.exon4;Parent=MS.gene050079.t1 |
| chr5.4 | CDS | 50353507 | 50353563 | 50353507 | ID=cds.MS.gene050079.t1;Parent=MS.gene050079.t1 |
| Gene Sequence |
| Protein sequence |
