Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010180.t1 | XP_003615160.1 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 8.80E-138 | 499.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010180.t1 | P42653 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 8.4e-137 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010180.t1 | B7FIY3 | 99.6 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 6.4e-138 | 499.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55401 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene010179 | PPI |
| MS.gene010180 | MS.gene052176 | PPI |
| MS.gene010180 | MS.gene054662 | PPI |
| MS.gene010180 | MS.gene028807 | PPI |
| MS.gene067412 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene86409 | PPI |
| MS.gene56475 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene31370 | PPI |
| MS.gene041125 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene83541 | PPI |
| MS.gene48435 | MS.gene010180 | PPI |
| MS.gene55400 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene050079 | PPI |
| MS.gene010180 | MS.gene047668 | PPI |
| MS.gene055488 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene64150 | PPI |
| MS.gene010180 | MS.gene38593 | PPI |
| MS.gene020411 | MS.gene010180 | PPI |
| MS.gene013133 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene043907 | PPI |
| MS.gene006850 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene010393 | PPI |
| MS.gene050079 | MS.gene010180 | PPI |
| MS.gene035837 | MS.gene010180 | PPI |
| MS.gene066779 | MS.gene010180 | PPI |
| MS.gene71392 | MS.gene010180 | PPI |
| MS.gene013047 | MS.gene010180 | PPI |
| MS.gene043514 | MS.gene010180 | PPI |
| MS.gene010180 | MS.gene53188 | PPI |
| MS.gene54847 | MS.gene010180 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010180.t1 | MTR_5g064580 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 532 |
| MS.gene010180.t1 | MTR_3g099380 | 90.385 | 260 | 25 | 0 | 1 | 260 | 1 | 260 | 1.18e-176 | 486 |
| MS.gene010180.t1 | MTR_3g099380 | 89.655 | 203 | 21 | 0 | 1 | 203 | 1 | 203 | 2.48e-135 | 380 |
| MS.gene010180.t1 | MTR_3g100620 | 75.949 | 237 | 56 | 1 | 8 | 243 | 11 | 247 | 2.51e-135 | 382 |
| MS.gene010180.t1 | MTR_2g091225 | 72.016 | 243 | 66 | 1 | 8 | 250 | 7 | 247 | 9.18e-129 | 365 |
| MS.gene010180.t1 | MTR_8g086270 | 71.605 | 243 | 67 | 1 | 8 | 250 | 7 | 247 | 4.64e-126 | 358 |
| MS.gene010180.t1 | MTR_2g015980 | 69.020 | 255 | 72 | 3 | 6 | 256 | 3 | 254 | 5.52e-126 | 358 |
| MS.gene010180.t1 | MTR_5g044160 | 70.325 | 246 | 71 | 1 | 3 | 248 | 2 | 245 | 2.16e-124 | 354 |
| MS.gene010180.t1 | MTR_4g083060 | 68.898 | 254 | 72 | 2 | 8 | 256 | 7 | 258 | 7.59e-124 | 354 |
| MS.gene010180.t1 | MTR_2g076960 | 66.154 | 260 | 85 | 2 | 1 | 259 | 1 | 258 | 1.07e-123 | 353 |
| MS.gene010180.t1 | MTR_2g091225 | 70.222 | 225 | 65 | 1 | 26 | 250 | 2 | 224 | 5.56e-116 | 332 |
| MS.gene010180.t1 | MTR_0137s0020 | 58.403 | 238 | 93 | 4 | 8 | 243 | 11 | 244 | 1.69e-91 | 270 |
| MS.gene010180.t1 | MTR_3g014060 | 57.983 | 238 | 94 | 4 | 8 | 243 | 11 | 244 | 1.11e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010180.t1 | AT1G78300 | 90.157 | 254 | 24 | 1 | 8 | 260 | 5 | 258 | 1.70e-169 | 468 |
| MS.gene010180.t1 | AT1G35160 | 85.985 | 264 | 33 | 2 | 1 | 260 | 1 | 264 | 1.79e-167 | 464 |
| MS.gene010180.t1 | AT4G09000 | 88.933 | 253 | 26 | 1 | 1 | 251 | 1 | 253 | 2.43e-166 | 461 |
| MS.gene010180.t1 | AT1G35160 | 77.740 | 292 | 33 | 3 | 1 | 260 | 1 | 292 | 3.38e-161 | 449 |
| MS.gene010180.t1 | AT4G09000 | 89.344 | 244 | 24 | 1 | 1 | 242 | 1 | 244 | 2.60e-160 | 447 |
| MS.gene010180.t1 | AT5G38480 | 81.496 | 254 | 46 | 1 | 6 | 258 | 2 | 255 | 3.17e-154 | 429 |
| MS.gene010180.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.29e-152 | 426 |
| MS.gene010180.t1 | AT3G02520 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.29e-152 | 426 |
| MS.gene010180.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 9.76e-152 | 423 |
| MS.gene010180.t1 | AT5G38480 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 9.76e-152 | 423 |
| MS.gene010180.t1 | AT5G10450 | 79.508 | 244 | 49 | 1 | 4 | 246 | 3 | 246 | 3.57e-145 | 406 |
| MS.gene010180.t1 | AT5G10450 | 79.668 | 241 | 48 | 1 | 4 | 243 | 3 | 243 | 8.26e-145 | 405 |
| MS.gene010180.t1 | AT5G10450 | 77.510 | 249 | 55 | 1 | 4 | 251 | 3 | 251 | 8.57e-145 | 406 |
| MS.gene010180.t1 | AT5G10450 | 80.000 | 240 | 47 | 1 | 4 | 242 | 3 | 242 | 5.42e-144 | 404 |
| MS.gene010180.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.21e-143 | 402 |
| MS.gene010180.t1 | AT5G16050 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.21e-143 | 402 |
| MS.gene010180.t1 | AT5G65430 | 78.138 | 247 | 52 | 2 | 1 | 246 | 1 | 246 | 2.10e-142 | 399 |
| MS.gene010180.t1 | AT5G65430 | 78.279 | 244 | 51 | 2 | 1 | 243 | 1 | 243 | 5.92e-142 | 398 |
| MS.gene010180.t1 | AT5G65430 | 78.601 | 243 | 50 | 2 | 1 | 242 | 1 | 242 | 2.72e-141 | 397 |
| MS.gene010180.t1 | AT1G26480 | 74.180 | 244 | 60 | 3 | 8 | 250 | 10 | 251 | 7.27e-129 | 366 |
| MS.gene010180.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.23e-122 | 349 |
| MS.gene010180.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.25e-122 | 349 |
| MS.gene010180.t1 | AT2G42590 | 70.833 | 240 | 68 | 1 | 8 | 247 | 7 | 244 | 8.79e-122 | 348 |
| MS.gene010180.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 3.66e-121 | 346 |
| MS.gene010180.t1 | AT1G34760 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 4.58e-121 | 346 |
| MS.gene010180.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.51e-117 | 335 |
| MS.gene010180.t1 | AT1G22300 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.51e-117 | 335 |
| MS.gene010180.t1 | AT1G22300 | 69.874 | 239 | 70 | 1 | 8 | 246 | 5 | 241 | 1.34e-115 | 332 |
| MS.gene010180.t1 | AT1G78220 | 48.927 | 233 | 116 | 2 | 8 | 239 | 5 | 235 | 1.26e-73 | 225 |
| MS.gene010180.t1 | AT1G22290 | 45.933 | 209 | 91 | 6 | 12 | 217 | 9 | 198 | 4.49e-48 | 159 |
| MS.gene010180.t1 | AT1G22290 | 45.631 | 206 | 90 | 6 | 12 | 214 | 9 | 195 | 6.16e-48 | 157 |
| MS.gene010180.t1 | AT2G10450 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 7.67e-18 | 76.3 |
Find 54 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCTGGTGATTCTA+AGG | 0.228252 | 5.4:+50292931 | MS.gene010180:CDS |
| AAGAATACCGTTACAGATAT+TGG | 0.234430 | 5.4:-50292879 | None:intergenic |
| TACTGCTCATCGGCGCCTTT+TGG | 0.244944 | 5.4:-50294591 | None:intergenic |
| TTGATTCCTTCTGCTGCTTC+TGG | 0.276388 | 5.4:+50292920 | MS.gene010180:CDS |
| CGATGAGGCTATTGCTGAAT+TGG | 0.295305 | 5.4:+50294350 | MS.gene010180:CDS |
| CGAAGAGATGGTCGATTTCA+TGG | 0.314624 | 5.4:+50292652 | MS.gene010180:CDS |
| TGCTTGTGGCCTTGCAAAAC+AGG | 0.353700 | 5.4:+50293885 | MS.gene010180:CDS |
| GATAATCACCTTTCATCTTA+AGG | 0.367061 | 5.4:-50292961 | None:intergenic |
| TTGTTTGGGTTTCAGGATGA+TGG | 0.406709 | 5.4:+50294543 | MS.gene010180:intron |
| TTCGTAACGTTCGGCTTGTT+CGG | 0.410967 | 5.4:-50292633 | None:intergenic |
| AGAGCAAGACCAAGCCTGAT+TGG | 0.420669 | 5.4:-50293817 | None:intergenic |
| TCCGTGATAACCTCACCCTT+TGG | 0.424479 | 5.4:+50294424 | MS.gene010180:CDS |
| GACCATCTCTTCGTAACGTT+CGG | 0.437327 | 5.4:-50292642 | None:intergenic |
| AGATGAAAGGTGATTATCAT+AGG | 0.447012 | 5.4:+50292966 | MS.gene010180:CDS |
| TACCACCAACTCACCCAATC+AGG | 0.450085 | 5.4:+50293803 | MS.gene010180:CDS |
| GCAAGGCCACAAGCACGATC+AGG | 0.466255 | 5.4:-50293877 | None:intergenic |
| ATTGCTGAATTGGATACATT+GGG | 0.469687 | 5.4:+50294360 | MS.gene010180:CDS |
| GCTTTCTTCCTTCTGTTCGA+TGG | 0.473046 | 5.4:-50292792 | None:intergenic |
| TACTGCTTATAAAGCTGCTC+AGG | 0.475422 | 5.4:+50293045 | MS.gene010180:CDS |
| ATCAAAGAAGCCGCACCAAA+AGG | 0.476807 | 5.4:+50294576 | MS.gene010180:CDS |
| GAGCAAGACCAAGCCTGATT+GGG | 0.484933 | 5.4:-50293816 | None:intergenic |
| TATTGCTGAATTGGATACAT+TGG | 0.488219 | 5.4:+50294359 | MS.gene010180:CDS |
| CTCTTCACGCGGTGTTGGTG+CGG | 0.499045 | 5.4:-50292588 | None:intergenic |
| GGTGAGTTCTTCGCTTTCGA+CGG | 0.507397 | 5.4:-50292690 | None:intergenic |
| CGGTGTTGGTGCGGTTGCCA+TGG | 0.510579 | 5.4:-50292579 | None:intergenic |
| TCGGAGCAAGACGTGCTTCG+TGG | 0.514368 | 5.4:+50292756 | MS.gene010180:CDS |
| AACTCTCCTGATCGTGCTTG+TGG | 0.523777 | 5.4:+50293871 | MS.gene010180:CDS |
| CCTTTGGACCTCTGACATGC+AGG | 0.533382 | 5.4:+50294440 | MS.gene010180:CDS |
| TTCTTCGCTTTCGACGGCGG+CGG | 0.538091 | 5.4:-50292684 | None:intergenic |
| GCGTGAAGAGTTCGTCTACA+TGG | 0.544670 | 5.4:+50292601 | MS.gene010180:CDS |
| CCAACTCACCCAATCAGGCT+TGG | 0.548958 | 5.4:+50293808 | MS.gene010180:CDS |
| CATCTCTTCCATCGAACAGA+AGG | 0.549390 | 5.4:+50292784 | MS.gene010180:CDS |
| CCTGCATGTCAGAGGTCCAA+AGG | 0.556945 | 5.4:-50294440 | None:intergenic |
| CTGCATGTCAGAGGTCCAAA+GGG | 0.558806 | 5.4:-50294439 | None:intergenic |
| ACGAACTCTTCACGCGGTGT+TGG | 0.561299 | 5.4:-50292593 | None:intergenic |
| AGCCTGATTGGGTGAGTTGG+TGG | 0.564969 | 5.4:-50293805 | None:intergenic |
| TGAATTGGATACATTGGGAG+AGG | 0.566946 | 5.4:+50294365 | MS.gene010180:CDS |
| TCCAAAGGGTGAGGTTATCA+CGG | 0.578031 | 5.4:-50294425 | None:intergenic |
| CCAAGCCTGATTGGGTGAGT+TGG | 0.579199 | 5.4:-50293808 | None:intergenic |
| GAGTTCTTCGCTTTCGACGG+CGG | 0.587801 | 5.4:-50292687 | None:intergenic |
| GAACTTTCCAATATCTGTAA+CGG | 0.597556 | 5.4:+50292872 | MS.gene010180:CDS |
| TGTCAGAGGTCCAAAGGGTG+AGG | 0.606809 | 5.4:-50294434 | None:intergenic |
| AGATCTGTAATCACGAATCA+CGG | 0.615306 | 5.4:-50292837 | None:intergenic |
| GAATCACCAGAAGCAGCAGA+AGG | 0.617542 | 5.4:-50292926 | None:intergenic |
| TATCTTGCTGAGTTTAAGAG+TGG | 0.621733 | 5.4:+50292989 | MS.gene010180:CDS |
| AGCCGAACGTTACGAAGAGA+TGG | 0.627906 | 5.4:+50292640 | MS.gene010180:CDS |
| ACGATATGATTACTGCTCAT+CGG | 0.628913 | 5.4:-50294601 | None:intergenic |
| ATATCATACCTGCATGTCAG+AGG | 0.643750 | 5.4:-50294448 | None:intergenic |
| ATTGGGAGAGGAATCATACA+AGG | 0.653137 | 5.4:+50294377 | MS.gene010180:CDS |
| GAGGAGGTTACGTTCTTCGA+CGG | 0.656962 | 5.4:-50292711 | None:intergenic |
| TAACATGTTCATCGTTACCA+CGG | 0.672519 | 5.4:-50292814 | None:intergenic |
| GAACAGAAGGAAGAAAGCCG+TGG | 0.676297 | 5.4:+50292797 | MS.gene010180:CDS |
| TATTCATTAGGCTTTCGATG+AGG | 0.689894 | 5.4:+50294335 | MS.gene010180:intron |
| ATGTAGACGAACTCTTCACG+CGG | 0.772962 | 5.4:-50292599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTAATTAGGTTAAAATAA+TGG | + | chr5.4:50293396-50293415 | MS.gene010180:intron | 15.0% |
| !!! | ATTTTGGTTTATATTTTGTT+TGG | + | chr5.4:50294528-50294547 | MS.gene010180:intron | 15.0% |
| !!! | TAATATGATTTGTGTTAATT+AGG | + | chr5.4:50293284-50293303 | MS.gene010180:intron | 15.0% |
| !!! | TTTTGGTTTATATTTTGTTT+GGG | + | chr5.4:50294529-50294548 | MS.gene010180:intron | 15.0% |
| !! | AAAATGAAAGTCTTAAATGA+TGG | + | chr5.4:50293483-50293502 | MS.gene010180:intron | 20.0% |
| !! | AATTCACATCAACATTAAAA+AGG | - | chr5.4:50294186-50294205 | None:intergenic | 20.0% |
| !! | AATTTCATTAACATGTTTGT+GGG | + | chr5.4:50294140-50294159 | MS.gene010180:intron | 20.0% |
| !! | ACTACAAACTTTAATTGAAA+AGG | - | chr5.4:50293979-50293998 | None:intergenic | 20.0% |
| !! | TAATGAATATAGAAAAGAAC+AGG | - | chr5.4:50294324-50294343 | None:intergenic | 20.0% |
| !! | TAATTTCATTAACATGTTTG+TGG | + | chr5.4:50294139-50294158 | MS.gene010180:intron | 20.0% |
| !!! | CATATTCTGTTTATTGATTT+TGG | + | chr5.4:50294512-50294531 | MS.gene010180:intron | 20.0% |
| !!! | GATTTGATGATTTCTTAATT+AGG | + | chr5.4:50293384-50293403 | MS.gene010180:intron | 20.0% |
| !!! | TGTTCTTTTCTATATTCATT+AGG | + | chr5.4:50294323-50294342 | MS.gene010180:intron | 20.0% |
| !!! | TTTTCAATTAAAGTTTGTAG+TGG | + | chr5.4:50293978-50293997 | MS.gene010180:intron | 20.0% |
| ! | ACTACAGACTTTAATTGAAA+AGG | - | chr5.4:50294040-50294059 | None:intergenic | 25.0% |
| ! | GAGATCTAACGTTATATTTA+TGG | + | chr5.4:50293083-50293102 | MS.gene010180:intron | 25.0% |
| ! | GCAATATTTCAAACAAAGAA+TGG | - | chr5.4:50293194-50293213 | None:intergenic | 25.0% |
| ! | TATTCTAGATACCGAATAAT+GGG | + | chr5.4:50293912-50293931 | MS.gene010180:intron | 25.0% |
| ! | TTTAGGTAAGGGAAATTTAA+CGG | + | chr5.4:50293228-50293247 | MS.gene010180:intron | 25.0% |
| !! | AATGTTGATGTGAATTTGTT+AGG | + | chr5.4:50294190-50294209 | MS.gene010180:intron | 25.0% |
| !! | TGATTCTGTTCTGTTATTTA+TGG | + | chr5.4:50294278-50294297 | MS.gene010180:intron | 25.0% |
| !! | TTTCAAATGAGTTGAATGTA+GGG | + | chr5.4:50293441-50293460 | MS.gene010180:intron | 25.0% |
| !! | TTTTCAATTAAAGTCTGTAG+TGG | + | chr5.4:50294039-50294058 | MS.gene010180:intron | 25.0% |
| !!! | TGTAGGGTATTGTTTATTTT+TGG | + | chr5.4:50293457-50293476 | MS.gene010180:intron | 25.0% |
| !!! | TTATATTTTGTTTGGGTTTC+AGG | + | chr5.4:50294536-50294555 | MS.gene010180:intron | 25.0% |
| !!! | TTTAATTTGACTCTGTTTGT+AGG | + | chr5.4:50293762-50293781 | MS.gene010180:intron | 25.0% |
| !!! | TTTTCAAATGAGTTGAATGT+AGG | + | chr5.4:50293440-50293459 | MS.gene010180:intron | 25.0% |
| AAGAATACCGTTACAGATAT+TGG | - | chr5.4:50292882-50292901 | None:intergenic | 30.0% | |
| AGATGAAAGGTGATTATCAT+AGG | + | chr5.4:50292966-50292985 | MS.gene010180:CDS | 30.0% | |
| ATTGCTGAATTGGATACATT+GGG | + | chr5.4:50294360-50294379 | MS.gene010180:CDS | 30.0% | |
| GAACTTTCCAATATCTGTAA+CGG | + | chr5.4:50292872-50292891 | MS.gene010180:CDS | 30.0% | |
| GATAATCACCTTTCATCTTA+AGG | - | chr5.4:50292964-50292983 | None:intergenic | 30.0% | |
| GTATTCTAGATACCGAATAA+TGG | + | chr5.4:50293911-50293930 | MS.gene010180:intron | 30.0% | |
| TATTGCTGAATTGGATACAT+TGG | + | chr5.4:50294359-50294378 | MS.gene010180:CDS | 30.0% | |
| TATTTGTTCCTCAACAAGTT+TGG | + | chr5.4:50294242-50294261 | MS.gene010180:intron | 30.0% | |
| TTAGATCTCAGAGAAAAAGA+TGG | - | chr5.4:50293072-50293091 | None:intergenic | 30.0% | |
| ! | CTATAACTGACTTTAGGTAA+GGG | + | chr5.4:50293217-50293236 | MS.gene010180:intron | 30.0% |
| ! | GTTTTCTACCTTAAGATGAA+AGG | + | chr5.4:50292953-50292972 | MS.gene010180:CDS | 30.0% |
| ! | TCTATAACTGACTTTAGGTA+AGG | + | chr5.4:50293216-50293235 | MS.gene010180:intron | 30.0% |
| ! | TTTAACGGAGTTTTTGTGTT+TGG | + | chr5.4:50293243-50293262 | MS.gene010180:intron | 30.0% |
| AATGGGAGATGATGTTCATT+TGG | + | chr5.4:50293929-50293948 | MS.gene010180:intron | 35.0% | |
| AGATCTGTAATCACGAATCA+CGG | - | chr5.4:50292840-50292859 | None:intergenic | 35.0% | |
| ATATTGACACCTCTGATCAA+AGG | + | chr5.4:50293610-50293629 | MS.gene010180:intron | 35.0% | |
| GAACATCATCTCCCATTATT+CGG | - | chr5.4:50293926-50293945 | None:intergenic | 35.0% | |
| TAACATGTTCATCGTTACCA+CGG | - | chr5.4:50292817-50292836 | None:intergenic | 35.0% | |
| TATCTTGCTGAGTTTAAGAG+TGG | + | chr5.4:50292989-50293008 | MS.gene010180:CDS | 35.0% | |
| TATTCATTAGGCTTTCGATG+AGG | + | chr5.4:50294335-50294354 | MS.gene010180:intron | 35.0% | |
| TTGAACATAATCATGTGCGT+CGG | - | chr5.4:50293659-50293678 | None:intergenic | 35.0% | |
| ! | GAATACTAACCTGTTTTGCA+AGG | - | chr5.4:50293897-50293916 | None:intergenic | 35.0% |
| ! | GTGTTATTATTGCGTCAGTT+TGG | + | chr5.4:50293715-50293734 | MS.gene010180:intron | 35.0% |
| ! | TGCGATCTATAACTGACTTT+AGG | + | chr5.4:50293211-50293230 | MS.gene010180:intron | 35.0% |
| !! | GATGTGAATTTGTTAGGTTC+TGG | + | chr5.4:50294196-50294215 | MS.gene010180:intron | 35.0% |
| ATATCATACCTGCATGTCAG+AGG | - | chr5.4:50294451-50294470 | None:intergenic | 40.0% | |
| ATTGGGAGAGGAATCATACA+AGG | + | chr5.4:50294377-50294396 | MS.gene010180:CDS | 40.0% | |
| TACTGCTTATAAAGCTGCTC+AGG | + | chr5.4:50293045-50293064 | MS.gene010180:CDS | 40.0% | |
| TGAATTGGATACATTGGGAG+AGG | + | chr5.4:50294365-50294384 | MS.gene010180:CDS | 40.0% | |
| ! | TTGTTTGGGTTTCAGGATGA+TGG | + | chr5.4:50294543-50294562 | MS.gene010180:intron | 40.0% |
| !! | ATGCTACACCAAACTTGTTG+AGG | - | chr5.4:50294253-50294272 | None:intergenic | 40.0% |
| ATCAAAGAAGCCGCACCAAA+AGG | + | chr5.4:50294576-50294595 | MS.gene010180:CDS | 45.0% | |
| ATGTAGACGAACTCTTCACG+CGG | - | chr5.4:50292602-50292621 | None:intergenic | 45.0% | |
| CATCTCTTCCATCGAACAGA+AGG | + | chr5.4:50292784-50292803 | MS.gene010180:CDS | 45.0% | |
| CGATGAGGCTATTGCTGAAT+TGG | + | chr5.4:50294350-50294369 | MS.gene010180:CDS | 45.0% | |
| GACCATCTCTTCGTAACGTT+CGG | - | chr5.4:50292645-50292664 | None:intergenic | 45.0% | |
| GCTTTCTTCCTTCTGTTCGA+TGG | - | chr5.4:50292795-50292814 | None:intergenic | 45.0% | |
| GTCGCCTACAAAAACGTCAT+CGG | + | chr5.4:50292737-50292756 | MS.gene010180:CDS | 45.0% | |
| TCCAAAGGGTGAGGTTATCA+CGG | - | chr5.4:50294428-50294447 | None:intergenic | 45.0% | |
| ! | CGAAGAGATGGTCGATTTCA+TGG | + | chr5.4:50292652-50292671 | MS.gene010180:CDS | 45.0% |
| ! | GATGACGTTTTTGTAGGCGA+CGG | - | chr5.4:50292738-50292757 | None:intergenic | 45.0% |
| ! | TGCTCCGATGACGTTTTTGT+AGG | - | chr5.4:50292744-50292763 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTGGTGATTCTA+AGG | + | chr5.4:50292931-50292950 | MS.gene010180:CDS | 45.0% |
| ! | TTCGTAACGTTCGGCTTGTT+CGG | - | chr5.4:50292636-50292655 | None:intergenic | 45.0% |
| ! | TTGATTCCTTCTGCTGCTTC+TGG | + | chr5.4:50292920-50292939 | MS.gene010180:CDS | 45.0% |
| AACTCTCCTGATCGTGCTTG+TGG | + | chr5.4:50293871-50293890 | MS.gene010180:CDS | 50.0% | |
| AGAGCAAGACCAAGCCTGAT+TGG | - | chr5.4:50293820-50293839 | None:intergenic | 50.0% | |
| AGCCGAACGTTACGAAGAGA+TGG | + | chr5.4:50292640-50292659 | MS.gene010180:CDS | 50.0% | |
| CTGCATGTCAGAGGTCCAAA+GGG | - | chr5.4:50294442-50294461 | None:intergenic | 50.0% | |
| GAACAGAAGGAAGAAAGCCG+TGG | + | chr5.4:50292797-50292816 | MS.gene010180:CDS | 50.0% | |
| GAATCACCAGAAGCAGCAGA+AGG | - | chr5.4:50292929-50292948 | None:intergenic | 50.0% | |
| GAGCAAGACCAAGCCTGATT+GGG | - | chr5.4:50293819-50293838 | None:intergenic | 50.0% | |
| GAGGAGGTTACGTTCTTCGA+CGG | - | chr5.4:50292714-50292733 | None:intergenic | 50.0% | |
| GCGTGAAGAGTTCGTCTACA+TGG | + | chr5.4:50292601-50292620 | MS.gene010180:CDS | 50.0% | |
| GGTGAGTTCTTCGCTTTCGA+CGG | - | chr5.4:50292693-50292712 | None:intergenic | 50.0% | |
| TACCACCAACTCACCCAATC+AGG | + | chr5.4:50293803-50293822 | MS.gene010180:CDS | 50.0% | |
| TCCGTGATAACCTCACCCTT+TGG | + | chr5.4:50294424-50294443 | MS.gene010180:CDS | 50.0% | |
| ! | TGCTTGTGGCCTTGCAAAAC+AGG | + | chr5.4:50293885-50293904 | MS.gene010180:CDS | 50.0% |
| ! | TGTGGGAGCTTTAGTGCAGT+GGG | + | chr5.4:50294157-50294176 | MS.gene010180:intron | 50.0% |
| ! | TTGTGGGAGCTTTAGTGCAG+TGG | + | chr5.4:50294156-50294175 | MS.gene010180:intron | 50.0% |
| ACGAACTCTTCACGCGGTGT+TGG | - | chr5.4:50292596-50292615 | None:intergenic | 55.0% | |
| CCAACTCACCCAATCAGGCT+TGG | + | chr5.4:50293808-50293827 | MS.gene010180:CDS | 55.0% | |
| CCAAGCCTGATTGGGTGAGT+TGG | - | chr5.4:50293811-50293830 | None:intergenic | 55.0% | |
| CCAGACACGCCTTTGATCAG+AGG | - | chr5.4:50293622-50293641 | None:intergenic | 55.0% | |
| CCTGCATGTCAGAGGTCCAA+AGG | - | chr5.4:50294443-50294462 | None:intergenic | 55.0% | |
| CCTTTGGACCTCTGACATGC+AGG | + | chr5.4:50294440-50294459 | MS.gene010180:CDS | 55.0% | |
| GAGTTCTTCGCTTTCGACGG+CGG | - | chr5.4:50292690-50292709 | None:intergenic | 55.0% | |
| TGTCAGAGGTCCAAAGGGTG+AGG | - | chr5.4:50294437-50294456 | None:intergenic | 55.0% | |
| ! | AGCCTGATTGGGTGAGTTGG+TGG | - | chr5.4:50293808-50293827 | None:intergenic | 55.0% |
| ! | AGGCGTGTCTGGTTTCTGAC+AGG | + | chr5.4:50293630-50293649 | MS.gene010180:intron | 55.0% |
| ! | CCTCTGATCAAAGGCGTGTC+TGG | + | chr5.4:50293619-50293638 | MS.gene010180:intron | 55.0% |
| ! | CGTTTTTGTAGGCGACGGAG+AGG | - | chr5.4:50292733-50292752 | None:intergenic | 55.0% |
| ! | GCGTGTCTGGTTTCTGACAG+GGG | + | chr5.4:50293632-50293651 | MS.gene010180:intron | 55.0% |
| ! | GGCGTGTCTGGTTTCTGACA+GGG | + | chr5.4:50293631-50293650 | MS.gene010180:intron | 55.0% |
| ! | TACTGCTCATCGGCGCCTTT+TGG | - | chr5.4:50294594-50294613 | None:intergenic | 55.0% |
| ! | TTTTGTAGGCGACGGAGAGG+AGG | - | chr5.4:50292730-50292749 | None:intergenic | 55.0% |
| GCAAGGCCACAAGCACGATC+AGG | - | chr5.4:50293880-50293899 | None:intergenic | 60.0% | |
| TCGGAGCAAGACGTGCTTCG+TGG | + | chr5.4:50292756-50292775 | MS.gene010180:CDS | 60.0% | |
| TTCTTCGCTTTCGACGGCGG+CGG | - | chr5.4:50292687-50292706 | None:intergenic | 60.0% | |
| ! | CTCATCGGCGCCTTTTGGTG+CGG | - | chr5.4:50294589-50294608 | None:intergenic | 60.0% |
| !! | CTCTTCACGCGGTGTTGGTG+CGG | - | chr5.4:50292591-50292610 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 50292581 | 50294614 | 50292581 | ID=MS.gene010180 |
| chr5.4 | mRNA | 50292581 | 50294614 | 50292581 | ID=MS.gene010180.t1;Parent=MS.gene010180 |
| chr5.4 | exon | 50292581 | 50293066 | 50292581 | ID=MS.gene010180.t1.exon1;Parent=MS.gene010180.t1 |
| chr5.4 | CDS | 50292581 | 50293066 | 50292581 | ID=cds.MS.gene010180.t1;Parent=MS.gene010180.t1 |
| chr5.4 | exon | 50293784 | 50293906 | 50293784 | ID=MS.gene010180.t1.exon2;Parent=MS.gene010180.t1 |
| chr5.4 | CDS | 50293784 | 50293906 | 50293784 | ID=cds.MS.gene010180.t1;Parent=MS.gene010180.t1 |
| chr5.4 | exon | 50294345 | 50294461 | 50294345 | ID=MS.gene010180.t1.exon3;Parent=MS.gene010180.t1 |
| chr5.4 | CDS | 50294345 | 50294461 | 50294345 | ID=cds.MS.gene010180.t1;Parent=MS.gene010180.t1 |
| chr5.4 | exon | 50294558 | 50294614 | 50294558 | ID=MS.gene010180.t1.exon4;Parent=MS.gene010180.t1 |
| chr5.4 | CDS | 50294558 | 50294614 | 50294558 | ID=cds.MS.gene010180.t1;Parent=MS.gene010180.t1 |
| Gene Sequence |
| Protein sequence |
