Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043907.t1 | XP_003615160.1 | 100 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 4.00E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043907.t1 | P42653 | 97.7 | 259 | 6 | 0 | 1 | 259 | 1 | 259 | 3.8e-137 | 488.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043907.t1 | B7FIY3 | 100.0 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 2.9e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86409 | MS.gene043907 | PPI |
| MS.gene55400 | MS.gene043907 | PPI |
| MS.gene013133 | MS.gene043907 | PPI |
| MS.gene83541 | MS.gene043907 | PPI |
| MS.gene028807 | MS.gene043907 | PPI |
| MS.gene050079 | MS.gene043907 | PPI |
| MS.gene48435 | MS.gene043907 | PPI |
| MS.gene055488 | MS.gene043907 | PPI |
| MS.gene020411 | MS.gene043907 | PPI |
| MS.gene71392 | MS.gene043907 | PPI |
| MS.gene043907 | MS.gene53188 | PPI |
| MS.gene006850 | MS.gene043907 | PPI |
| MS.gene047668 | MS.gene043907 | PPI |
| MS.gene054662 | MS.gene043907 | PPI |
| MS.gene010393 | MS.gene043907 | PPI |
| MS.gene55401 | MS.gene043907 | PPI |
| MS.gene035837 | MS.gene043907 | PPI |
| MS.gene066779 | MS.gene043907 | PPI |
| MS.gene013047 | MS.gene043907 | PPI |
| MS.gene31370 | MS.gene043907 | PPI |
| MS.gene38593 | MS.gene043907 | PPI |
| MS.gene010180 | MS.gene043907 | PPI |
| MS.gene043514 | MS.gene043907 | PPI |
| MS.gene54847 | MS.gene043907 | PPI |
| MS.gene56475 | MS.gene043907 | PPI |
| MS.gene043907 | MS.gene31370 | PPI |
| MS.gene041125 | MS.gene043907 | PPI |
| MS.gene052176 | MS.gene043907 | PPI |
| MS.gene010179 | MS.gene043907 | PPI |
| MS.gene067412 | MS.gene043907 | PPI |
| MS.gene64150 | MS.gene043907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043907.t1 | MTR_5g064580 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| MS.gene043907.t1 | MTR_3g099380 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 4.87e-177 | 488 |
| MS.gene043907.t1 | MTR_3g099380 | 90.148 | 203 | 20 | 0 | 1 | 203 | 1 | 203 | 7.58e-136 | 381 |
| MS.gene043907.t1 | MTR_3g100620 | 75.527 | 237 | 57 | 1 | 8 | 243 | 11 | 247 | 8.47e-135 | 380 |
| MS.gene043907.t1 | MTR_2g091225 | 72.428 | 243 | 65 | 1 | 8 | 250 | 7 | 247 | 2.50e-129 | 367 |
| MS.gene043907.t1 | MTR_8g086270 | 71.605 | 243 | 67 | 1 | 8 | 250 | 7 | 247 | 3.69e-126 | 358 |
| MS.gene043907.t1 | MTR_2g015980 | 69.020 | 255 | 72 | 3 | 6 | 256 | 3 | 254 | 3.80e-126 | 358 |
| MS.gene043907.t1 | MTR_2g076960 | 66.154 | 260 | 85 | 2 | 1 | 259 | 1 | 258 | 6.45e-124 | 353 |
| MS.gene043907.t1 | MTR_5g044160 | 69.919 | 246 | 72 | 1 | 3 | 248 | 2 | 245 | 8.32e-124 | 353 |
| MS.gene043907.t1 | MTR_4g083060 | 68.504 | 254 | 73 | 2 | 8 | 256 | 7 | 258 | 1.99e-123 | 353 |
| MS.gene043907.t1 | MTR_2g091225 | 70.667 | 225 | 64 | 1 | 26 | 250 | 2 | 224 | 2.12e-116 | 333 |
| MS.gene043907.t1 | MTR_0137s0020 | 57.983 | 238 | 94 | 4 | 8 | 243 | 11 | 244 | 6.05e-91 | 269 |
| MS.gene043907.t1 | MTR_3g014060 | 57.563 | 238 | 95 | 4 | 8 | 243 | 11 | 244 | 2.50e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043907.t1 | AT1G78300 | 90.551 | 254 | 23 | 1 | 8 | 260 | 5 | 258 | 3.96e-170 | 470 |
| MS.gene043907.t1 | AT1G35160 | 85.606 | 264 | 34 | 2 | 1 | 260 | 1 | 264 | 4.60e-167 | 462 |
| MS.gene043907.t1 | AT4G09000 | 88.538 | 253 | 27 | 1 | 1 | 251 | 1 | 253 | 6.25e-166 | 459 |
| MS.gene043907.t1 | AT1G35160 | 77.397 | 292 | 34 | 3 | 1 | 260 | 1 | 292 | 8.58e-161 | 448 |
| MS.gene043907.t1 | AT4G09000 | 88.934 | 244 | 25 | 1 | 1 | 242 | 1 | 244 | 1.13e-159 | 446 |
| MS.gene043907.t1 | AT5G38480 | 81.890 | 254 | 45 | 1 | 6 | 258 | 2 | 255 | 9.71e-155 | 431 |
| MS.gene043907.t1 | AT3G02520 | 81.176 | 255 | 47 | 1 | 6 | 259 | 3 | 257 | 4.02e-153 | 427 |
| MS.gene043907.t1 | AT3G02520 | 81.176 | 255 | 47 | 1 | 6 | 259 | 3 | 257 | 4.02e-153 | 427 |
| MS.gene043907.t1 | AT5G38480 | 81.890 | 254 | 44 | 2 | 6 | 258 | 2 | 254 | 4.11e-152 | 424 |
| MS.gene043907.t1 | AT5G38480 | 81.890 | 254 | 44 | 2 | 6 | 258 | 2 | 254 | 4.11e-152 | 424 |
| MS.gene043907.t1 | AT5G10450 | 79.098 | 244 | 50 | 1 | 4 | 246 | 3 | 246 | 7.86e-145 | 405 |
| MS.gene043907.t1 | AT5G10450 | 77.108 | 249 | 56 | 1 | 4 | 251 | 3 | 251 | 2.48e-144 | 405 |
| MS.gene043907.t1 | AT5G10450 | 79.253 | 241 | 49 | 1 | 4 | 243 | 3 | 243 | 2.88e-144 | 404 |
| MS.gene043907.t1 | AT5G16050 | 79.693 | 261 | 49 | 2 | 3 | 260 | 2 | 261 | 1.10e-143 | 404 |
| MS.gene043907.t1 | AT5G16050 | 79.693 | 261 | 49 | 2 | 3 | 260 | 2 | 261 | 1.10e-143 | 404 |
| MS.gene043907.t1 | AT5G10450 | 79.583 | 240 | 48 | 1 | 4 | 242 | 3 | 242 | 1.71e-143 | 402 |
| MS.gene043907.t1 | AT5G65430 | 77.733 | 247 | 53 | 2 | 1 | 246 | 1 | 246 | 7.66e-142 | 398 |
| MS.gene043907.t1 | AT5G65430 | 77.869 | 244 | 52 | 2 | 1 | 243 | 1 | 243 | 1.77e-141 | 397 |
| MS.gene043907.t1 | AT5G65430 | 78.189 | 243 | 51 | 2 | 1 | 242 | 1 | 242 | 1.02e-140 | 395 |
| MS.gene043907.t1 | AT1G26480 | 73.770 | 244 | 61 | 3 | 8 | 250 | 10 | 251 | 2.70e-128 | 364 |
| MS.gene043907.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 5.27e-122 | 348 |
| MS.gene043907.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 6.50e-122 | 348 |
| MS.gene043907.t1 | AT2G42590 | 70.833 | 240 | 68 | 1 | 8 | 247 | 7 | 244 | 1.59e-121 | 347 |
| MS.gene043907.t1 | AT1G34760 | 70.588 | 238 | 68 | 1 | 8 | 245 | 5 | 240 | 1.14e-120 | 345 |
| MS.gene043907.t1 | AT1G34760 | 70.588 | 238 | 68 | 1 | 8 | 245 | 5 | 240 | 1.40e-120 | 344 |
| MS.gene043907.t1 | AT1G22300 | 67.857 | 252 | 74 | 2 | 8 | 259 | 5 | 249 | 5.35e-117 | 335 |
| MS.gene043907.t1 | AT1G22300 | 67.857 | 252 | 74 | 2 | 8 | 259 | 5 | 249 | 6.17e-117 | 335 |
| MS.gene043907.t1 | AT1G22300 | 69.456 | 239 | 71 | 1 | 8 | 246 | 5 | 241 | 1.28e-115 | 332 |
| MS.gene043907.t1 | AT1G78220 | 48.927 | 233 | 116 | 2 | 8 | 239 | 5 | 235 | 2.35e-73 | 224 |
| MS.gene043907.t1 | AT1G22290 | 45.933 | 209 | 91 | 6 | 12 | 217 | 9 | 198 | 4.64e-48 | 159 |
| MS.gene043907.t1 | AT1G22290 | 45.631 | 206 | 90 | 6 | 12 | 214 | 9 | 195 | 7.16e-48 | 157 |
| MS.gene043907.t1 | AT2G10450 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 7.59e-18 | 76.3 |
Find 54 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTTCTGGTGATTCTA+AGG | 0.228252 | 5.3:+50913575 | MS.gene043907:CDS |
| AAGAATACCGTTACAGATAT+TGG | 0.234430 | 5.3:-50913523 | None:intergenic |
| TACTGCTCATCGGCGCCTTT+TGG | 0.244944 | 5.3:-50915257 | None:intergenic |
| TTGATTCCTTCTGCTGCTTC+TGG | 0.276388 | 5.3:+50913564 | MS.gene043907:CDS |
| CGATGAGGCTATTGCTGAAT+TGG | 0.295305 | 5.3:+50915012 | MS.gene043907:CDS |
| CGAAGAGATGGTCGATTTCA+TGG | 0.314624 | 5.3:+50913296 | MS.gene043907:CDS |
| TGCTTGTGGCCTTGCAAAAC+AGG | 0.353700 | 5.3:+50914576 | MS.gene043907:CDS |
| GATAATCACCTTTCATCTTA+AGG | 0.367061 | 5.3:-50913605 | None:intergenic |
| TTGTTTGGGTTTCAGGATGA+TGG | 0.385071 | 5.3:+50915209 | MS.gene043907:intron |
| TTCGTAACGTTCGGCTTGTT+CGG | 0.410967 | 5.3:-50913277 | None:intergenic |
| GCTTTCTTCCTTCTGTTCAA+TGG | 0.417132 | 5.3:-50913436 | None:intergenic |
| AGAGCAAGACCAAGCCTGAT+TGG | 0.420669 | 5.3:-50914508 | None:intergenic |
| TCCGTGATAACCTCACCCTT+TGG | 0.424479 | 5.3:+50915086 | MS.gene043907:CDS |
| GACCATCTCTTCGTAACGTT+CGG | 0.437327 | 5.3:-50913286 | None:intergenic |
| AGATGAAAGGTGATTATCAT+AGG | 0.447012 | 5.3:+50913610 | MS.gene043907:CDS |
| TACCACCAACTCACCCAATC+AGG | 0.450085 | 5.3:+50914494 | MS.gene043907:CDS |
| GCAAGGCCACAAGCACGATC+AGG | 0.466255 | 5.3:-50914568 | None:intergenic |
| ATTGCTGAATTGGATACATT+GGG | 0.469687 | 5.3:+50915022 | MS.gene043907:CDS |
| ATCAAAGAAGCCGCACCAAA+AGG | 0.476807 | 5.3:+50915242 | MS.gene043907:CDS |
| GAGCAAGACCAAGCCTGATT+GGG | 0.484933 | 5.3:-50914507 | None:intergenic |
| TATTGCTGAATTGGATACAT+TGG | 0.488219 | 5.3:+50915021 | MS.gene043907:CDS |
| ACGTGAAGAGTTCGTCTACA+TGG | 0.496790 | 5.3:+50913245 | MS.gene043907:CDS |
| TGGTGTTGGTGCGGTTGCCA+TGG | 0.499485 | 5.3:-50913223 | None:intergenic |
| TACTGCTTATAAATCTGCTC+AGG | 0.506740 | 5.3:+50913689 | MS.gene043907:CDS |
| GGTGAGTTCTTCGCTTTCGA+CGG | 0.507397 | 5.3:-50913334 | None:intergenic |
| TCGGAGCAAGACGTGCTTCG+TGG | 0.514368 | 5.3:+50913400 | MS.gene043907:CDS |
| AACTCTCCTGATCGTGCTTG+TGG | 0.523777 | 5.3:+50914562 | MS.gene043907:CDS |
| CATCTCTTCCATTGAACAGA+AGG | 0.532355 | 5.3:+50913428 | MS.gene043907:CDS |
| CCTTTGGACCTCTGACATGC+AGG | 0.533382 | 5.3:+50915102 | MS.gene043907:CDS |
| TTCTTCGCTTTCGACGGCGG+CGG | 0.538091 | 5.3:-50913328 | None:intergenic |
| CCAACTCACCCAATCAGGCT+TGG | 0.548958 | 5.3:+50914499 | MS.gene043907:CDS |
| CTGCATGTCAGAGGTCCAAA+GGG | 0.558806 | 5.3:-50915101 | None:intergenic |
| AGCCTGATTGGGTGAGTTGG+TGG | 0.564969 | 5.3:-50914496 | None:intergenic |
| TGAATTGGATACATTGGGAG+AGG | 0.566946 | 5.3:+50915027 | MS.gene043907:CDS |
| CTCTTCACGTGGTGTTGGTG+CGG | 0.568646 | 5.3:-50913232 | None:intergenic |
| CCTGCATGTCAGAGGTCCAA+AGG | 0.569453 | 5.3:-50915102 | None:intergenic |
| TCCAAAGGGTGAGGTTATCA+CGG | 0.578031 | 5.3:-50915087 | None:intergenic |
| ACGAACTCTTCACGTGGTGT+TGG | 0.578137 | 5.3:-50913237 | None:intergenic |
| CCAAGCCTGATTGGGTGAGT+TGG | 0.579199 | 5.3:-50914499 | None:intergenic |
| GAGTTCTTCGCTTTCGACGG+CGG | 0.587801 | 5.3:-50913331 | None:intergenic |
| GAACTTTCCAATATCTGTAA+CGG | 0.597556 | 5.3:+50913516 | MS.gene043907:CDS |
| TGTCAGAGGTCCAAAGGGTG+AGG | 0.606809 | 5.3:-50915096 | None:intergenic |
| TATCTTGCTGAGTTTAAGAG+TGG | 0.607569 | 5.3:+50913633 | MS.gene043907:CDS |
| AGATCTGTAATCACGAATCA+CGG | 0.615306 | 5.3:-50913481 | None:intergenic |
| GAATCACCAGAAGCAGCAGA+AGG | 0.617542 | 5.3:-50913570 | None:intergenic |
| AGCCGAACGTTACGAAGAGA+TGG | 0.627906 | 5.3:+50913284 | MS.gene043907:CDS |
| ACGATATGATTACTGCTCAT+CGG | 0.628913 | 5.3:-50915267 | None:intergenic |
| GAGAAGGTTACGTTCTTCGA+CGG | 0.631201 | 5.3:-50913355 | None:intergenic |
| ATACAATACCTGCATGTCAG+AGG | 0.636154 | 5.3:-50915110 | None:intergenic |
| ATTGGGAGAGGAATCATACA+AGG | 0.640718 | 5.3:+50915039 | MS.gene043907:CDS |
| TAACATGTTCATCGTTACCA+CGG | 0.672519 | 5.3:-50913458 | None:intergenic |
| GAACAGAAGGAAGAAAGCCG+TGG | 0.688432 | 5.3:+50913441 | MS.gene043907:CDS |
| TATTCATTAGGCTTTCGATG+AGG | 0.689894 | 5.3:+50914997 | MS.gene043907:intron |
| ATGTAGACGAACTCTTCACG+TGG | 0.738511 | 5.3:-50913243 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTTCAAACAAATAA+TGG | - | chr5.3:50913867-50913886 | None:intergenic | 10.0% |
| !!! | ATTTAACGATTTTCTTAATT+AGG | + | chr5.3:50914069-50914088 | MS.gene043907:intron | 15.0% |
| !!! | TAATGCAATAATTTGTTTTT+GGG | + | chr5.3:50913989-50914008 | MS.gene043907:intron | 15.0% |
| !!! | TTAATGCAATAATTTGTTTT+TGG | + | chr5.3:50913988-50914007 | MS.gene043907:intron | 15.0% |
| !! | ACTACAAACTTTAATTGAAA+AGG | - | chr5.3:50914670-50914689 | None:intergenic | 20.0% |
| !! | ATTCACATCAACAATAAAAA+AGG | - | chr5.3:50914817-50914836 | None:intergenic | 20.0% |
| !! | TAATGAATATAGAAAAGAAC+AGG | - | chr5.3:50914986-50915005 | None:intergenic | 20.0% |
| !! | TTAGATCTCATAGAAAAAAA+TGG | - | chr5.3:50913716-50913735 | None:intergenic | 20.0% |
| !! | TTCACATCAACAATAAAAAA+GGG | - | chr5.3:50914816-50914835 | None:intergenic | 20.0% |
| !!! | AAAATGAAAGTCTTATAAGA+TGG | + | chr5.3:50914164-50914183 | MS.gene043907:intron | 20.0% |
| !!! | AATAGGGTATTGTTTATTTT+TGG | + | chr5.3:50914138-50914157 | MS.gene043907:intron | 20.0% |
| !!! | ATTTTGGTTTATGTTTTGTT+TGG | + | chr5.3:50915194-50915213 | MS.gene043907:intron | 20.0% |
| !!! | TAATTTCATTAACGTTTTTG+CGG | + | chr5.3:50914769-50914788 | MS.gene043907:intron | 20.0% |
| !!! | TGTTCTTTTCTATATTCATT+AGG | + | chr5.3:50914985-50915004 | MS.gene043907:intron | 20.0% |
| !!! | TTTGAAATGAGTTGAAAATA+GGG | + | chr5.3:50914122-50914141 | MS.gene043907:intron | 20.0% |
| !!! | TTTTCAATTAAAGTTTGTAG+TGG | + | chr5.3:50914669-50914688 | MS.gene043907:intron | 20.0% |
| !!! | TTTTGAAATGAGTTGAAAAT+AGG | + | chr5.3:50914121-50914140 | MS.gene043907:intron | 20.0% |
| !!! | TTTTGGTTTATGTTTTGTTT+GGG | + | chr5.3:50915195-50915214 | MS.gene043907:intron | 20.0% |
| !! | AATTTCATTAACGTTTTTGC+GGG | + | chr5.3:50914770-50914789 | MS.gene043907:intron | 25.0% |
| !! | ATTGTTGATGTGAATTTGTT+AGG | + | chr5.3:50914822-50914841 | MS.gene043907:intron | 25.0% |
| !!! | ATTCTTCTGCTTATTGATTT+TGG | + | chr5.3:50915178-50915197 | MS.gene043907:intron | 25.0% |
| !!! | TTGTGATTTGTGTTTTTTGA+TGG | + | chr5.3:50913931-50913950 | MS.gene043907:intron | 25.0% |
| !!! | TTTAATTTGACTCTGTTTGT+AGG | + | chr5.3:50914453-50914472 | MS.gene043907:intron | 25.0% |
| AAGAATACCGTTACAGATAT+TGG | - | chr5.3:50913526-50913545 | None:intergenic | 30.0% | |
| AGATGAAAGGTGATTATCAT+AGG | + | chr5.3:50913610-50913629 | MS.gene043907:CDS | 30.0% | |
| ATTAGCACATGAAAAAGAAC+AGG | - | chr5.3:50914956-50914975 | None:intergenic | 30.0% | |
| ATTGCTGAATTGGATACATT+GGG | + | chr5.3:50915022-50915041 | MS.gene043907:CDS | 30.0% | |
| GAACTTTCCAATATCTGTAA+CGG | + | chr5.3:50913516-50913535 | MS.gene043907:CDS | 30.0% | |
| GATAATCACCTTTCATCTTA+AGG | - | chr5.3:50913608-50913627 | None:intergenic | 30.0% | |
| TATTGCTGAATTGGATACAT+TGG | + | chr5.3:50915021-50915040 | MS.gene043907:CDS | 30.0% | |
| ! | GTTTTCTACCTTAAGATGAA+AGG | + | chr5.3:50913597-50913616 | MS.gene043907:CDS | 30.0% |
| ! | TGATTCTGTTCTGTTGTTTA+TGG | + | chr5.3:50914910-50914929 | MS.gene043907:intron | 30.0% |
| ! | TGTTCTAGATACCGAATAAT+GGG | + | chr5.3:50914603-50914622 | MS.gene043907:intron | 30.0% |
| !!! | CGTTTTCTCAACTTTTTTAC+TGG | + | chr5.3:50914382-50914401 | MS.gene043907:intron | 30.0% |
| !!! | TTATGTTTTGTTTGGGTTTC+AGG | + | chr5.3:50915202-50915221 | MS.gene043907:intron | 30.0% |
| AATGGGAGATGATGTTCATT+TGG | + | chr5.3:50914620-50914639 | MS.gene043907:intron | 35.0% | |
| AGATCTGTAATCACGAATCA+CGG | - | chr5.3:50913484-50913503 | None:intergenic | 35.0% | |
| ATGCTACACGAAACTTATTG+AGG | - | chr5.3:50914885-50914904 | None:intergenic | 35.0% | |
| GAACATCATCTCCCATTATT+CGG | - | chr5.3:50914617-50914636 | None:intergenic | 35.0% | |
| TAACATGTTCATCGTTACCA+CGG | - | chr5.3:50913461-50913480 | None:intergenic | 35.0% | |
| TACTGCTTATAAATCTGCTC+AGG | + | chr5.3:50913689-50913708 | MS.gene043907:CDS | 35.0% | |
| TATCTTGCTGAGTTTAAGAG+TGG | + | chr5.3:50913633-50913652 | MS.gene043907:CDS | 35.0% | |
| TATTCATTAGGCTTTCGATG+AGG | + | chr5.3:50914997-50915016 | MS.gene043907:intron | 35.0% | |
| TCAGATCGCAAATCTTCAAA+TGG | - | chr5.3:50914430-50914449 | None:intergenic | 35.0% | |
| ! | GTGTTCTAGATACCGAATAA+TGG | + | chr5.3:50914602-50914621 | MS.gene043907:intron | 35.0% |
| ! | TGCGATCTATAACTGACTTT+AGG | + | chr5.3:50913886-50913905 | MS.gene043907:intron | 35.0% |
| !! | GATGTGAATTTGTTAGGTTC+TGG | + | chr5.3:50914828-50914847 | MS.gene043907:intron | 35.0% |
| !!! | TTGTTTTTGGGTGATGTGAT+CGG | + | chr5.3:50914001-50914020 | MS.gene043907:intron | 35.0% |
| AAAGATACATCGCACACGAT+AGG | - | chr5.3:50914283-50914302 | None:intergenic | 40.0% | |
| ATACAATACCTGCATGTCAG+AGG | - | chr5.3:50915113-50915132 | None:intergenic | 40.0% | |
| ATTGGGAGAGGAATCATACA+AGG | + | chr5.3:50915039-50915058 | MS.gene043907:CDS | 40.0% | |
| CATCTCTTCCATTGAACAGA+AGG | + | chr5.3:50913428-50913447 | MS.gene043907:CDS | 40.0% | |
| GCTTTCTTCCTTCTGTTCAA+TGG | - | chr5.3:50913439-50913458 | None:intergenic | 40.0% | |
| TATCGTGTGCGATGTATCTT+TGG | + | chr5.3:50914282-50914301 | MS.gene043907:intron | 40.0% | |
| TGAATTGGATACATTGGGAG+AGG | + | chr5.3:50915027-50915046 | MS.gene043907:CDS | 40.0% | |
| ! | GAACACTAACCTGTTTTGCA+AGG | - | chr5.3:50914588-50914607 | None:intergenic | 40.0% |
| ! | TTGTTTGGGTTTCAGGATGA+TGG | + | chr5.3:50915209-50915228 | MS.gene043907:intron | 40.0% |
| ACGTGAAGAGTTCGTCTACA+TGG | + | chr5.3:50913245-50913264 | MS.gene043907:CDS | 45.0% | |
| ATCAAAGAAGCCGCACCAAA+AGG | + | chr5.3:50915242-50915261 | MS.gene043907:CDS | 45.0% | |
| ATGTAGACGAACTCTTCACG+TGG | - | chr5.3:50913246-50913265 | None:intergenic | 45.0% | |
| CGATGAGGCTATTGCTGAAT+TGG | + | chr5.3:50915012-50915031 | MS.gene043907:CDS | 45.0% | |
| GACCATCTCTTCGTAACGTT+CGG | - | chr5.3:50913289-50913308 | None:intergenic | 45.0% | |
| GAGAAGGTTACGTTCTTCGA+CGG | - | chr5.3:50913358-50913377 | None:intergenic | 45.0% | |
| GTCGCCTACAAAAACGTCAT+CGG | + | chr5.3:50913381-50913400 | MS.gene043907:CDS | 45.0% | |
| TCCAAAGGGTGAGGTTATCA+CGG | - | chr5.3:50915090-50915109 | None:intergenic | 45.0% | |
| ! | ACACCTTTGATCAGAGGTGT+CGG | - | chr5.3:50914327-50914346 | None:intergenic | 45.0% |
| ! | CGAAGAGATGGTCGATTTCA+TGG | + | chr5.3:50913296-50913315 | MS.gene043907:CDS | 45.0% |
| ! | GATGACGTTTTTGTAGGCGA+CGG | - | chr5.3:50913382-50913401 | None:intergenic | 45.0% |
| ! | TGCTCCGATGACGTTTTTGT+AGG | - | chr5.3:50913388-50913407 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTGGTGATTCTA+AGG | + | chr5.3:50913575-50913594 | MS.gene043907:CDS | 45.0% |
| ! | TTCGTAACGTTCGGCTTGTT+CGG | - | chr5.3:50913280-50913299 | None:intergenic | 45.0% |
| ! | TTGATTCCTTCTGCTGCTTC+TGG | + | chr5.3:50913564-50913583 | MS.gene043907:CDS | 45.0% |
| AACTCTCCTGATCGTGCTTG+TGG | + | chr5.3:50914562-50914581 | MS.gene043907:CDS | 50.0% | |
| ACGAACTCTTCACGTGGTGT+TGG | - | chr5.3:50913240-50913259 | None:intergenic | 50.0% | |
| AGACCGACACCTCTGATCAA+AGG | + | chr5.3:50914321-50914340 | MS.gene043907:intron | 50.0% | |
| AGAGCAAGACCAAGCCTGAT+TGG | - | chr5.3:50914511-50914530 | None:intergenic | 50.0% | |
| AGCCGAACGTTACGAAGAGA+TGG | + | chr5.3:50913284-50913303 | MS.gene043907:CDS | 50.0% | |
| CCAGACACACCTTTGATCAG+AGG | - | chr5.3:50914333-50914352 | None:intergenic | 50.0% | |
| CTGCATGTCAGAGGTCCAAA+GGG | - | chr5.3:50915104-50915123 | None:intergenic | 50.0% | |
| GAACAGAAGGAAGAAAGCCG+TGG | + | chr5.3:50913441-50913460 | MS.gene043907:CDS | 50.0% | |
| GAATCACCAGAAGCAGCAGA+AGG | - | chr5.3:50913573-50913592 | None:intergenic | 50.0% | |
| GAGCAAGACCAAGCCTGATT+GGG | - | chr5.3:50914510-50914529 | None:intergenic | 50.0% | |
| GGTGAGTTCTTCGCTTTCGA+CGG | - | chr5.3:50913337-50913356 | None:intergenic | 50.0% | |
| TACCACCAACTCACCCAATC+AGG | + | chr5.3:50914494-50914513 | MS.gene043907:CDS | 50.0% | |
| TCCGTGATAACCTCACCCTT+TGG | + | chr5.3:50915086-50915105 | MS.gene043907:CDS | 50.0% | |
| ! | CCTCTGATCAAAGGTGTGTC+TGG | + | chr5.3:50914330-50914349 | MS.gene043907:intron | 50.0% |
| ! | TGCTTGTGGCCTTGCAAAAC+AGG | + | chr5.3:50914576-50914595 | MS.gene043907:CDS | 50.0% |
| ! | TTTTGTAGGCGACGGAGAGA+AGG | - | chr5.3:50913374-50913393 | None:intergenic | 50.0% |
| CCAACTCACCCAATCAGGCT+TGG | + | chr5.3:50914499-50914518 | MS.gene043907:CDS | 55.0% | |
| CCAAGCCTGATTGGGTGAGT+TGG | - | chr5.3:50914502-50914521 | None:intergenic | 55.0% | |
| CCTGCATGTCAGAGGTCCAA+AGG | - | chr5.3:50915105-50915124 | None:intergenic | 55.0% | |
| CCTTTGGACCTCTGACATGC+AGG | + | chr5.3:50915102-50915121 | MS.gene043907:CDS | 55.0% | |
| GAGTTCTTCGCTTTCGACGG+CGG | - | chr5.3:50913334-50913353 | None:intergenic | 55.0% | |
| TGTCAGAGGTCCAAAGGGTG+AGG | - | chr5.3:50915099-50915118 | None:intergenic | 55.0% | |
| ! | AGCCTGATTGGGTGAGTTGG+TGG | - | chr5.3:50914499-50914518 | None:intergenic | 55.0% |
| ! | TACTGCTCATCGGCGCCTTT+TGG | - | chr5.3:50915260-50915279 | None:intergenic | 55.0% |
| ! | TGCGGGAGCTTTAGTGCACT+GGG | + | chr5.3:50914787-50914806 | MS.gene043907:intron | 55.0% |
| ! | TTGCGGGAGCTTTAGTGCAC+TGG | + | chr5.3:50914786-50914805 | MS.gene043907:intron | 55.0% |
| !! | CTCTTCACGTGGTGTTGGTG+CGG | - | chr5.3:50913235-50913254 | None:intergenic | 55.0% |
| GCAAGGCCACAAGCACGATC+AGG | - | chr5.3:50914571-50914590 | None:intergenic | 60.0% | |
| TCGGAGCAAGACGTGCTTCG+TGG | + | chr5.3:50913400-50913419 | MS.gene043907:CDS | 60.0% | |
| TTCTTCGCTTTCGACGGCGG+CGG | - | chr5.3:50913331-50913350 | None:intergenic | 60.0% | |
| ! | CTCATCGGCGCCTTTTGGTG+CGG | - | chr5.3:50915255-50915274 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 50913225 | 50915280 | 50913225 | ID=MS.gene043907 |
| chr5.3 | mRNA | 50913225 | 50915280 | 50913225 | ID=MS.gene043907.t1;Parent=MS.gene043907 |
| chr5.3 | exon | 50913225 | 50913710 | 50913225 | ID=MS.gene043907.t1.exon1;Parent=MS.gene043907.t1 |
| chr5.3 | CDS | 50913225 | 50913710 | 50913225 | ID=cds.MS.gene043907.t1;Parent=MS.gene043907.t1 |
| chr5.3 | exon | 50914475 | 50914597 | 50914475 | ID=MS.gene043907.t1.exon2;Parent=MS.gene043907.t1 |
| chr5.3 | CDS | 50914475 | 50914597 | 50914475 | ID=cds.MS.gene043907.t1;Parent=MS.gene043907.t1 |
| chr5.3 | exon | 50915007 | 50915123 | 50915007 | ID=MS.gene043907.t1.exon3;Parent=MS.gene043907.t1 |
| chr5.3 | CDS | 50915007 | 50915123 | 50915007 | ID=cds.MS.gene043907.t1;Parent=MS.gene043907.t1 |
| chr5.3 | exon | 50915224 | 50915280 | 50915224 | ID=MS.gene043907.t1.exon4;Parent=MS.gene043907.t1 |
| chr5.3 | CDS | 50915224 | 50915280 | 50915224 | ID=cds.MS.gene043907.t1;Parent=MS.gene043907.t1 |
| Gene Sequence |
| Protein sequence |
