Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013133.t1 | XP_003602823.2 | 100 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 1.50E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013133.t1 | P46266 | 96.9 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 2.4e-136 | 486.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013133.t1 | G7J3X9 | 100.0 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 1.1e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013133 | MS.gene050079 | PPI |
| MS.gene013133 | MS.gene047668 | PPI |
| MS.gene013133 | MS.gene64150 | PPI |
| MS.gene013133 | MS.gene38593 | PPI |
| MS.gene066779 | MS.gene013133 | PPI |
| MS.gene013133 | MS.gene043907 | PPI |
| MS.gene043514 | MS.gene013133 | PPI |
| MS.gene013133 | MS.gene010393 | PPI |
| MS.gene54847 | MS.gene013133 | PPI |
| MS.gene56475 | MS.gene013133 | PPI |
| MS.gene013133 | MS.gene041125 | PPI |
| MS.gene013133 | MS.gene53188 | PPI |
| MS.gene067412 | MS.gene013133 | PPI |
| MS.gene013133 | MS.gene55401 | PPI |
| MS.gene013133 | MS.gene010179 | PPI |
| MS.gene013133 | MS.gene052176 | PPI |
| MS.gene013133 | MS.gene054662 | PPI |
| MS.gene013133 | MS.gene055488 | PPI |
| MS.gene013133 | MS.gene010180 | PPI |
| MS.gene013133 | MS.gene028807 | PPI |
| MS.gene013133 | MS.gene86409 | PPI |
| MS.gene013133 | MS.gene013047 | PPI |
| MS.gene48435 | MS.gene013133 | PPI |
| MS.gene013133 | MS.gene035837 | PPI |
| MS.gene013133 | MS.gene043514 | PPI |
| MS.gene55400 | MS.gene013133 | PPI |
| MS.gene013133 | MS.gene31370 | PPI |
| MS.gene020411 | MS.gene013133 | PPI |
| MS.gene71392 | MS.gene013133 | PPI |
| MS.gene013133 | MS.gene83541 | PPI |
| MS.gene006850 | MS.gene013133 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013133.t1 | MTR_3g099380 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| MS.gene013133.t1 | MTR_5g064580 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 4.87e-177 | 488 |
| MS.gene013133.t1 | MTR_3g099380 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 6.31e-150 | 417 |
| MS.gene013133.t1 | MTR_3g100620 | 76.793 | 237 | 54 | 1 | 8 | 243 | 11 | 247 | 1.50e-135 | 382 |
| MS.gene013133.t1 | MTR_2g091225 | 72.840 | 243 | 64 | 2 | 3 | 245 | 2 | 242 | 7.14e-129 | 365 |
| MS.gene013133.t1 | MTR_4g083060 | 70.518 | 251 | 72 | 2 | 8 | 258 | 7 | 255 | 1.48e-126 | 361 |
| MS.gene013133.t1 | MTR_5g044160 | 71.951 | 246 | 67 | 2 | 3 | 248 | 2 | 245 | 1.62e-126 | 360 |
| MS.gene013133.t1 | MTR_8g086270 | 71.371 | 248 | 69 | 2 | 3 | 250 | 2 | 247 | 1.63e-125 | 357 |
| MS.gene013133.t1 | MTR_2g015980 | 69.444 | 252 | 73 | 3 | 6 | 256 | 3 | 251 | 4.17e-124 | 353 |
| MS.gene013133.t1 | MTR_2g076960 | 66.275 | 255 | 84 | 1 | 1 | 255 | 1 | 253 | 8.05e-122 | 348 |
| MS.gene013133.t1 | MTR_2g091225 | 72.727 | 220 | 58 | 2 | 26 | 245 | 2 | 219 | 2.99e-117 | 335 |
| MS.gene013133.t1 | MTR_0137s0020 | 59.244 | 238 | 91 | 4 | 8 | 243 | 11 | 244 | 6.46e-91 | 269 |
| MS.gene013133.t1 | MTR_3g014060 | 58.824 | 238 | 92 | 4 | 8 | 243 | 11 | 244 | 5.08e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013133.t1 | AT1G78300 | 91.797 | 256 | 20 | 1 | 6 | 260 | 3 | 258 | 6.41e-173 | 477 |
| MS.gene013133.t1 | AT1G35160 | 87.259 | 259 | 32 | 1 | 3 | 260 | 6 | 264 | 1.61e-167 | 464 |
| MS.gene013133.t1 | AT4G09000 | 86.260 | 262 | 32 | 1 | 3 | 260 | 5 | 266 | 1.57e-164 | 456 |
| MS.gene013133.t1 | AT1G35160 | 78.746 | 287 | 32 | 2 | 3 | 260 | 6 | 292 | 2.11e-161 | 449 |
| MS.gene013133.t1 | AT5G38480 | 86.111 | 252 | 34 | 1 | 6 | 257 | 2 | 252 | 1.13e-160 | 446 |
| MS.gene013133.t1 | AT3G02520 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.61e-159 | 441 |
| MS.gene013133.t1 | AT3G02520 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.61e-159 | 441 |
| MS.gene013133.t1 | AT5G38480 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.41e-158 | 440 |
| MS.gene013133.t1 | AT5G38480 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.41e-158 | 440 |
| MS.gene013133.t1 | AT4G09000 | 88.750 | 240 | 27 | 0 | 3 | 242 | 5 | 244 | 3.67e-158 | 442 |
| MS.gene013133.t1 | AT5G16050 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.38e-150 | 419 |
| MS.gene013133.t1 | AT5G16050 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.38e-150 | 419 |
| MS.gene013133.t1 | AT5G10450 | 78.776 | 245 | 51 | 1 | 3 | 246 | 2 | 246 | 4.34e-143 | 401 |
| MS.gene013133.t1 | AT5G10450 | 76.800 | 250 | 57 | 1 | 3 | 251 | 2 | 251 | 1.20e-142 | 401 |
| MS.gene013133.t1 | AT5G10450 | 78.926 | 242 | 50 | 1 | 3 | 243 | 2 | 243 | 1.51e-142 | 400 |
| MS.gene013133.t1 | AT5G10450 | 79.253 | 241 | 49 | 1 | 3 | 242 | 2 | 242 | 6.29e-142 | 399 |
| MS.gene013133.t1 | AT5G65430 | 79.167 | 240 | 49 | 1 | 8 | 246 | 7 | 246 | 6.64e-141 | 395 |
| MS.gene013133.t1 | AT5G65430 | 79.325 | 237 | 48 | 1 | 8 | 243 | 7 | 243 | 1.68e-140 | 395 |
| MS.gene013133.t1 | AT5G65430 | 79.661 | 236 | 47 | 1 | 8 | 242 | 7 | 242 | 5.97e-140 | 394 |
| MS.gene013133.t1 | AT1G26480 | 72.222 | 252 | 67 | 2 | 8 | 258 | 10 | 259 | 1.16e-129 | 368 |
| MS.gene013133.t1 | AT1G34760 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 3.38e-122 | 348 |
| MS.gene013133.t1 | AT1G34760 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 4.82e-122 | 348 |
| MS.gene013133.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.26e-121 | 347 |
| MS.gene013133.t1 | AT2G42590 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.30e-121 | 348 |
| MS.gene013133.t1 | AT2G42590 | 69.200 | 250 | 74 | 2 | 8 | 256 | 7 | 254 | 3.98e-121 | 346 |
| MS.gene013133.t1 | AT1G22300 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 5.38e-116 | 333 |
| MS.gene013133.t1 | AT1G22300 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 6.55e-116 | 333 |
| MS.gene013133.t1 | AT1G22300 | 69.038 | 239 | 72 | 2 | 8 | 246 | 5 | 241 | 1.08e-114 | 329 |
| MS.gene013133.t1 | AT1G78220 | 48.069 | 233 | 118 | 2 | 8 | 239 | 5 | 235 | 1.19e-70 | 217 |
| MS.gene013133.t1 | AT1G22290 | 45.238 | 210 | 93 | 5 | 11 | 217 | 8 | 198 | 9.56e-48 | 158 |
| MS.gene013133.t1 | AT1G22290 | 44.928 | 207 | 92 | 5 | 11 | 214 | 8 | 195 | 1.92e-47 | 156 |
| MS.gene013133.t1 | AT2G10450 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 4.40e-18 | 77.0 |
Find 71 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCAAGACCCAGCCTAAT+TGG | 0.274942 | 3.1:-79441470 | None:intergenic |
| GACGGTGAGTTCTTCGTTAT+CGG | 0.280595 | 3.1:-79440741 | None:intergenic |
| CTCATTCCTTCCGCTGCTTC+CGG | 0.316176 | 3.1:+79440968 | MS.gene013133:CDS |
| TGATGAAGCAATTGCTGAAC+TGG | 0.341177 | 3.1:+79442328 | MS.gene013133:CDS |
| TACTGCTGTTCATCGGGTTT+AGG | 0.348488 | 3.1:-79442568 | None:intergenic |
| CGAAGAAATGGTGGAGTTCA+TGG | 0.350821 | 3.1:+79440700 | MS.gene013133:CDS |
| AACCTGTTTAGCAAGATTGC+AGG | 0.360144 | 3.1:-79441540 | None:intergenic |
| CACCATTTCTTCGTAGCGTT+CGG | 0.376229 | 3.1:-79440690 | None:intergenic |
| GTAGCCTACAAGAACGTTAT+CGG | 0.387718 | 3.1:+79440785 | MS.gene013133:CDS |
| TTCGTAGCGTTCGGCTTGTT+CGG | 0.387733 | 3.1:-79440681 | None:intergenic |
| TGCCTGCAATCTTGCTAAAC+AGG | 0.391731 | 3.1:+79441538 | MS.gene013133:CDS |
| GGTAATCTCCCTTCATCTTA+AGG | 0.395416 | 3.1:-79441009 | None:intergenic |
| CGCTGCTTCCGGTGATTCCA+AGG | 0.396427 | 3.1:+79440979 | MS.gene013133:CDS |
| TTTGTTTGGTTTCAGGATGA+TGG | 0.406229 | 3.1:+79442520 | MS.gene013133:intron |
| AGCCGAACGCTACGAAGAAA+TGG | 0.413922 | 3.1:+79440688 | MS.gene013133:CDS |
| TTTGTTTACTGCTGTTCATC+GGG | 0.421726 | 3.1:-79442574 | None:intergenic |
| TGCCACCAACTCATCCAATT+AGG | 0.435904 | 3.1:+79441456 | MS.gene013133:CDS |
| GCAAGATTGCAGGCACGATC+AGG | 0.442951 | 3.1:-79441530 | None:intergenic |
| AGCTGCTTCTTTAATTTCAT+CGG | 0.448476 | 3.1:-79442545 | None:intergenic |
| TTCTTCGTTATCGGCGTTGG+CGG | 0.458530 | 3.1:-79440732 | None:intergenic |
| ACCAACTCATCCAATTAGGC+TGG | 0.462152 | 3.1:+79441460 | MS.gene013133:CDS |
| CTCAGCAGCCTCCTTACGCT+CGG | 0.471405 | 3.1:-79441062 | None:intergenic |
| CCTGCATGTCAGAGGTCCAT+AGG | 0.480592 | 3.1:-79442418 | None:intergenic |
| ATTTGTTTACTGCTGTTCAT+CGG | 0.482074 | 3.1:-79442575 | None:intergenic |
| TGCTCCGATAACGTTCTTGT+AGG | 0.488944 | 3.1:-79440789 | None:intergenic |
| TCGGAGCACGACGTGCTTCG+TGG | 0.496761 | 3.1:+79440804 | MS.gene013133:CDS |
| CCCAGCCTAATTGGATGAGT+TGG | 0.496782 | 3.1:-79441461 | None:intergenic |
| CGCCGCTTACAAATCTGCTC+AGG | 0.501140 | 3.1:+79441093 | MS.gene013133:CDS |
| CATCTTAAGGTAGAAAACCT+TGG | 0.502188 | 3.1:-79440996 | None:intergenic |
| GGCGGCCGCTCATTCACCTC+GGG | 0.502842 | 3.1:+79440631 | MS.gene013133:CDS |
| CAAGACTGGCGCCGAGCGTA+AGG | 0.509038 | 3.1:+79441051 | MS.gene013133:CDS |
| TTCCTCGATCGAACAGAAAG+AGG | 0.515919 | 3.1:+79440835 | MS.gene013133:CDS |
| GAGTTCTTCGTTATCGGCGT+TGG | 0.515957 | 3.1:-79440735 | None:intergenic |
| AGCCTAATTGGATGAGTTGG+TGG | 0.523887 | 3.1:-79441458 | None:intergenic |
| TTCGTGATAATCTCACCCTA+TGG | 0.525895 | 3.1:+79442402 | MS.gene013133:CDS |
| GTAGAAAACCTTGGAATCAC+CGG | 0.533118 | 3.1:-79440987 | None:intergenic |
| CCTATGGACCTCTGACATGC+AGG | 0.534557 | 3.1:+79442418 | MS.gene013133:CDS |
| AGATCGGTAGTCACGGATGA+CGG | 0.545474 | 3.1:-79440885 | None:intergenic |
| CTGCATGTCAGAGGTCCATA+GGG | 0.549120 | 3.1:-79442417 | None:intergenic |
| AGCAGCGGAAGGAATGAGAC+GGG | 0.550202 | 3.1:-79440963 | None:intergenic |
| TGAACTCAGCAAGATACCTA+TGG | 0.552878 | 3.1:-79441030 | None:intergenic |
| CTCCTCTTTCTGTTCGATCG+AGG | 0.555820 | 3.1:-79440837 | None:intergenic |
| AAGAACTCACCGTCGAAGAG+AGG | 0.556409 | 3.1:+79440750 | MS.gene013133:CDS |
| TATCTTGCTGAGTTCAAGAC+TGG | 0.559984 | 3.1:+79441037 | MS.gene013133:CDS |
| CTACCGATCTAAGATCGAAT+CGG | 0.562157 | 3.1:+79440898 | MS.gene013133:CDS |
| CCTTGGCGAGGAATCATACA+AGG | 0.572604 | 3.1:+79442355 | MS.gene013133:CDS |
| TCGGGAAGAGAACGTTTACA+TGG | 0.578574 | 3.1:+79440649 | MS.gene013133:CDS |
| ATTGCTGAACTGGATACCCT+TGG | 0.584167 | 3.1:+79442338 | MS.gene013133:CDS |
| CTTGTATGATTCCTCGCCAA+GGG | 0.586259 | 3.1:-79442354 | None:intergenic |
| CCAACTCATCCAATTAGGCT+GGG | 0.587390 | 3.1:+79441461 | MS.gene013133:CDS |
| TGGCGGCCGCTCATTCACCT+CGG | 0.588265 | 3.1:+79440630 | MS.gene013133:CDS |
| CTTGGAATCACCGGAAGCAG+CGG | 0.589029 | 3.1:-79440978 | None:intergenic |
| AAGCAGCGGAAGGAATGAGA+CGG | 0.594104 | 3.1:-79440964 | None:intergenic |
| GACTGGCGCCGAGCGTAAGG+AGG | 0.597871 | 3.1:+79441054 | MS.gene013133:CDS |
| CCTTGTATGATTCCTCGCCA+AGG | 0.605796 | 3.1:-79442355 | None:intergenic |
| AAACGTGATCCTCGTTGCCG+CGG | 0.607870 | 3.1:-79440862 | None:intergenic |
| AGATGAAGGGAGATTACCAT+AGG | 0.607967 | 3.1:+79441014 | MS.gene013133:CDS |
| GAGAAGGTTCCTCTCTTCGA+CGG | 0.608781 | 3.1:-79440759 | None:intergenic |
| TCTTGTAGGCTACAGAGAGA+AGG | 0.628236 | 3.1:-79440775 | None:intergenic |
| GAATCACCGGAAGCAGCGGA+AGG | 0.629660 | 3.1:-79440974 | None:intergenic |
| AATCAATACCTGCATGTCAG+AGG | 0.637050 | 3.1:-79442426 | None:intergenic |
| ATGTAAACGTTCTCTTCCCG+AGG | 0.637688 | 3.1:-79440647 | None:intergenic |
| GCTCCGATTCGATCTTAGAT+CGG | 0.641337 | 3.1:-79440901 | None:intergenic |
| CGATCTTAGATCGGTAGTCA+CGG | 0.645752 | 3.1:-79440892 | None:intergenic |
| CTCTTCCCGAGGTGAATGAG+CGG | 0.645933 | 3.1:-79440636 | None:intergenic |
| AGAGGAGAGCCGCGGCAACG+AGG | 0.653525 | 3.1:+79440853 | MS.gene013133:CDS |
| GAGCTTTCTAACATCTGTGA+CGG | 0.658608 | 3.1:+79440920 | MS.gene013133:CDS |
| GAACAGAAAGAGGAGAGCCG+CGG | 0.660532 | 3.1:+79440845 | MS.gene013133:CDS |
| AACCTGAGCAGATTTGTAAG+CGG | 0.663795 | 3.1:-79441095 | None:intergenic |
| TGAACTGGATACCCTTGGCG+AGG | 0.679766 | 3.1:+79442343 | MS.gene013133:CDS |
| CGAACGCTACGAAGAAATGG+TGG | 0.680192 | 3.1:+79440691 | MS.gene013133:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAGAAAACAAAAATATAT+GGG | - | chr3.1:79442475-79442494 | None:intergenic | 15.0% |
| !! | CATTTCAAAATGAAATTTAA+AGG | - | chr3.1:79442196-79442215 | None:intergenic | 15.0% |
| !! | TACTTTGTATATGAAATATA+TGG | + | chr3.1:79441352-79441371 | MS.gene013133:intron | 15.0% |
| !!! | GTTATTTTGTAGTTATTTTA+AGG | + | chr3.1:79441601-79441620 | MS.gene013133:intron | 15.0% |
| !! | AAACAACAAAAAGGAAAAAA+CGG | - | chr3.1:79441123-79441142 | None:intergenic | 20.0% |
| !! | AATAAGATGTATATCCAAAA+AGG | - | chr3.1:79441627-79441646 | None:intergenic | 20.0% |
| !! | AATAATAAGGATACCAAAAA+AGG | - | chr3.1:79441978-79441997 | None:intergenic | 20.0% |
| !! | ATTTAAAGGAATAAATTCCA+TGG | - | chr3.1:79442182-79442201 | None:intergenic | 20.0% |
| !! | GAGAAGAAAACAAAAATATA+TGG | - | chr3.1:79442476-79442495 | None:intergenic | 20.0% |
| !! | TTTAAAGGAATAAATTCCAT+GGG | - | chr3.1:79442181-79442200 | None:intergenic | 20.0% |
| !!! | CTCATGAATATTTTTTTGTT+TGG | + | chr3.1:79442290-79442309 | MS.gene013133:intron | 20.0% |
| !!! | TTTAATCAATGTATTGATCT+TGG | + | chr3.1:79442497-79442516 | MS.gene013133:intron | 20.0% |
| ! | CAAAATCGAAAACAACAAAA+AGG | - | chr3.1:79441132-79441151 | None:intergenic | 25.0% |
| ! | TTAAAGGAATAAATTCCATG+GGG | - | chr3.1:79442180-79442199 | None:intergenic | 25.0% |
| !! | AATACTTGACAACTCATTTT+AGG | - | chr3.1:79442017-79442036 | None:intergenic | 25.0% |
| !! | AGTAGTACCTAATGTTATTT+GGG | - | chr3.1:79442149-79442168 | None:intergenic | 25.0% |
| !! | AGTTGTCAAGTATTGTTTAT+TGG | + | chr3.1:79442023-79442042 | MS.gene013133:intron | 25.0% |
| !! | CTGAAAACATTTTATGAACA+TGG | + | chr3.1:79441737-79441756 | MS.gene013133:intron | 25.0% |
| !! | GCAATATTTTTCACAATCTT+TGG | + | chr3.1:79441314-79441333 | MS.gene013133:intron | 25.0% |
| !! | TGAAATATATGGAGTATTTG+TGG | + | chr3.1:79441363-79441382 | MS.gene013133:intron | 25.0% |
| !! | TTTTGTGATTCAAATCTGTT+AGG | + | chr3.1:79441147-79441166 | MS.gene013133:intron | 25.0% |
| !!! | ATGAGTTTTTTCTGTTCTAA+TGG | + | chr3.1:79442251-79442270 | MS.gene013133:intron | 25.0% |
| !!! | TAGTTATTTTAAGGCCTTTT+TGG | + | chr3.1:79441610-79441629 | MS.gene013133:intron | 25.0% |
| !!! | TTTTTTGTTTGGTAATCACT+AGG | + | chr3.1:79442301-79442320 | MS.gene013133:intron | 25.0% |
| AACTCTGATCAAATAGTGTA+AGG | - | chr3.1:79441820-79441839 | None:intergenic | 30.0% | |
| AATAAGGATACCAAAAAAGG+AGG | - | chr3.1:79441975-79441994 | None:intergenic | 30.0% | |
| ACTCTGATCAAATAGTGTAA+GGG | - | chr3.1:79441819-79441838 | None:intergenic | 30.0% | |
| CTTATTTCCATTACTTCTAC+AGG | - | chr3.1:79441717-79441736 | None:intergenic | 30.0% | |
| GAGTAGTACCTAATGTTATT+TGG | - | chr3.1:79442150-79442169 | None:intergenic | 30.0% | |
| TGTAATTGAAAGGTTTGTGA+TGG | + | chr3.1:79441389-79441408 | MS.gene013133:intron | 30.0% | |
| TTTGTGGATCTGTAATTGAA+AGG | + | chr3.1:79441379-79441398 | MS.gene013133:intron | 30.0% | |
| ! | ACACTATTTGATCAGAGTTT+TGG | + | chr3.1:79441821-79441840 | MS.gene013133:intron | 30.0% |
| ! | AGCTGCTTCTTTAATTTCAT+CGG | - | chr3.1:79442548-79442567 | None:intergenic | 30.0% |
| ! | GTTTTCTACCTTAAGATGAA+GGG | + | chr3.1:79441001-79441020 | MS.gene013133:CDS | 30.0% |
| ! | TGTCAAGTATTGTTTATTGG+TGG | + | chr3.1:79442026-79442045 | MS.gene013133:intron | 30.0% |
| !! | TGTATTGATCTTGGTTTGTT+TGG | + | chr3.1:79442506-79442525 | MS.gene013133:intron | 30.0% |
| !!! | AATGTGTTCCTTTGTTTTAC+AGG | + | chr3.1:79441415-79441434 | MS.gene013133:intron | 30.0% |
| ACTTCTACAGGAAAACAGTT+TGG | - | chr3.1:79441705-79441724 | None:intergenic | 35.0% | |
| AGGTCAAGTAGGCAATAATA+AGG | - | chr3.1:79441991-79442010 | None:intergenic | 35.0% | |
| CATCTTAAGGTAGAAAACCT+TGG | - | chr3.1:79440999-79441018 | None:intergenic | 35.0% | |
| TGCAATGTCCTGTAAAACAA+AGG | - | chr3.1:79441426-79441445 | None:intergenic | 35.0% | |
| TGGATTCTACTAACCACTTA+TGG | + | chr3.1:79441943-79441962 | MS.gene013133:intron | 35.0% | |
| ! | CTGTTTTCCTGTAGAAGTAA+TGG | + | chr3.1:79441707-79441726 | MS.gene013133:intron | 35.0% |
| ! | GGTTTTCTACCTTAAGATGA+AGG | + | chr3.1:79441000-79441019 | MS.gene013133:CDS | 35.0% |
| ! | TTTGTTTGGTTTCAGGATGA+TGG | + | chr3.1:79442520-79442539 | MS.gene013133:intron | 35.0% |
| !! | ATCTTGGTTTGTTTGGTTTC+AGG | + | chr3.1:79442513-79442532 | MS.gene013133:intron | 35.0% |
| !! | ATTTTAGGTGTAGGTCAAGT+AGG | - | chr3.1:79442002-79442021 | None:intergenic | 35.0% |
| !! | TGACAACTCATTTTAGGTGT+AGG | - | chr3.1:79442011-79442030 | None:intergenic | 35.0% |
| AACCTGAGCAGATTTGTAAG+CGG | - | chr3.1:79441098-79441117 | None:intergenic | 40.0% | |
| AACCTGTTTAGCAAGATTGC+AGG | - | chr3.1:79441543-79441562 | None:intergenic | 40.0% | |
| AATCAATACCTGCATGTCAG+AGG | - | chr3.1:79442429-79442448 | None:intergenic | 40.0% | |
| AGATGAAGGGAGATTACCAT+AGG | + | chr3.1:79441014-79441033 | MS.gene013133:CDS | 40.0% | |
| GAAGTTATGCTCTTGCTACT+AGG | - | chr3.1:79442228-79442247 | None:intergenic | 40.0% | |
| GAGCTTTCTAACATCTGTGA+CGG | + | chr3.1:79440920-79440939 | MS.gene013133:CDS | 40.0% | |
| GGTAATCTCCCTTCATCTTA+AGG | - | chr3.1:79441012-79441031 | None:intergenic | 40.0% | |
| GTAGAAAACCTTGGAATCAC+CGG | - | chr3.1:79440990-79441009 | None:intergenic | 40.0% | |
| GTAGCCTACAAGAACGTTAT+CGG | + | chr3.1:79440785-79440804 | MS.gene013133:CDS | 40.0% | |
| TATCTTGCTGAGTTCAAGAC+TGG | + | chr3.1:79441037-79441056 | MS.gene013133:CDS | 40.0% | |
| TGAACTCAGCAAGATACCTA+TGG | - | chr3.1:79441033-79441052 | None:intergenic | 40.0% | |
| TGATGAAGCAATTGCTGAAC+TGG | + | chr3.1:79442328-79442347 | MS.gene013133:CDS | 40.0% | |
| TTCGTGATAATCTCACCCTA+TGG | + | chr3.1:79442402-79442421 | MS.gene013133:CDS | 40.0% | |
| ! | CTACCGATCTAAGATCGAAT+CGG | + | chr3.1:79440898-79440917 | MS.gene013133:CDS | 40.0% |
| ! | GCAACAATGATGTTGCGTTT+TGG | + | chr3.1:79441923-79441942 | MS.gene013133:intron | 40.0% |
| ! | TGTTTATTGGTGGTTAGCTC+AGG | + | chr3.1:79442036-79442055 | MS.gene013133:intron | 40.0% |
| !!! | ATGGATCAGACCTCCTTTTT+TGG | + | chr3.1:79441962-79441981 | MS.gene013133:intron | 40.0% |
| AAGGAGGTCTGATCCATAAG+TGG | - | chr3.1:79441959-79441978 | None:intergenic | 45.0% | |
| ACCAACTCATCCAATTAGGC+TGG | + | chr3.1:79441460-79441479 | MS.gene013133:CDS | 45.0% | |
| ATGTAAACGTTCTCTTCCCG+AGG | - | chr3.1:79440650-79440669 | None:intergenic | 45.0% | |
| ATTGCTGAACTGGATACCCT+TGG | + | chr3.1:79442338-79442357 | MS.gene013133:CDS | 45.0% | |
| CACCATTTCTTCGTAGCGTT+CGG | - | chr3.1:79440693-79440712 | None:intergenic | 45.0% | |
| CCAACTCATCCAATTAGGCT+GGG | + | chr3.1:79441461-79441480 | MS.gene013133:CDS | 45.0% | |
| CGATCTTAGATCGGTAGTCA+CGG | - | chr3.1:79440895-79440914 | None:intergenic | 45.0% | |
| CTTGTATGATTCCTCGCCAA+GGG | - | chr3.1:79442357-79442376 | None:intergenic | 45.0% | |
| GACGGTGAGTTCTTCGTTAT+CGG | - | chr3.1:79440744-79440763 | None:intergenic | 45.0% | |
| GGTGGTGCCCAAATAACATT+AGG | + | chr3.1:79442139-79442158 | MS.gene013133:intron | 45.0% | |
| TACTGCTGTTCATCGGGTTT+AGG | - | chr3.1:79442571-79442590 | None:intergenic | 45.0% | |
| TCGGGAAGAGAACGTTTACA+TGG | + | chr3.1:79440649-79440668 | MS.gene013133:CDS | 45.0% | |
| TCTTGTAGGCTACAGAGAGA+AGG | - | chr3.1:79440778-79440797 | None:intergenic | 45.0% | |
| TGCCACCAACTCATCCAATT+AGG | + | chr3.1:79441456-79441475 | MS.gene013133:CDS | 45.0% | |
| TGCCTGCAATCTTGCTAAAC+AGG | + | chr3.1:79441538-79441557 | MS.gene013133:CDS | 45.0% | |
| TGCTCCGATAACGTTCTTGT+AGG | - | chr3.1:79440792-79440811 | None:intergenic | 45.0% | |
| TTCCTCGATCGAACAGAAAG+AGG | + | chr3.1:79440835-79440854 | MS.gene013133:CDS | 45.0% | |
| ! | AGCCTAATTGGATGAGTTGG+TGG | - | chr3.1:79441461-79441480 | None:intergenic | 45.0% |
| ! | CGAAGAAATGGTGGAGTTCA+TGG | + | chr3.1:79440700-79440719 | MS.gene013133:CDS | 45.0% |
| ! | GCTCCGATTCGATCTTAGAT+CGG | - | chr3.1:79440904-79440923 | None:intergenic | 45.0% |
| AAGAACTCACCGTCGAAGAG+AGG | + | chr3.1:79440750-79440769 | MS.gene013133:CDS | 50.0% | |
| AAGCAGCGGAAGGAATGAGA+CGG | - | chr3.1:79440967-79440986 | None:intergenic | 50.0% | |
| ACACCTTGCTCTAGCCTGTA+GGG | + | chr3.1:79442113-79442132 | MS.gene013133:intron | 50.0% | |
| AGAGCAAGACCCAGCCTAAT+TGG | - | chr3.1:79441473-79441492 | None:intergenic | 50.0% | |
| AGATCGGTAGTCACGGATGA+CGG | - | chr3.1:79440888-79440907 | None:intergenic | 50.0% | |
| AGCCGAACGCTACGAAGAAA+TGG | + | chr3.1:79440688-79440707 | MS.gene013133:CDS | 50.0% | |
| CCCAGCCTAATTGGATGAGT+TGG | - | chr3.1:79441464-79441483 | None:intergenic | 50.0% | |
| CCTTGGCGAGGAATCATACA+AGG | + | chr3.1:79442355-79442374 | MS.gene013133:CDS | 50.0% | |
| CCTTGTATGATTCCTCGCCA+AGG | - | chr3.1:79442358-79442377 | None:intergenic | 50.0% | |
| CGAACGCTACGAAGAAATGG+TGG | + | chr3.1:79440691-79440710 | MS.gene013133:CDS | 50.0% | |
| CTCCTCTTTCTGTTCGATCG+AGG | - | chr3.1:79440840-79440859 | None:intergenic | 50.0% | |
| CTGCATGTCAGAGGTCCATA+GGG | - | chr3.1:79442420-79442439 | None:intergenic | 50.0% | |
| GAGAAGGTTCCTCTCTTCGA+CGG | - | chr3.1:79440762-79440781 | None:intergenic | 50.0% | |
| GAGTTCTTCGTTATCGGCGT+TGG | - | chr3.1:79440738-79440757 | None:intergenic | 50.0% | |
| TACTACTCGTGTAGTCCCCA+TGG | + | chr3.1:79442162-79442181 | MS.gene013133:intron | 50.0% | |
| ! | TTCGTAGCGTTCGGCTTGTT+CGG | - | chr3.1:79440684-79440703 | None:intergenic | 50.0% |
| ! | TTCTTCGTTATCGGCGTTGG+CGG | - | chr3.1:79440735-79440754 | None:intergenic | 50.0% |
| AAACGTGATCCTCGTTGCCG+CGG | - | chr3.1:79440865-79440884 | None:intergenic | 55.0% | |
| AGCAGCGGAAGGAATGAGAC+GGG | - | chr3.1:79440966-79440985 | None:intergenic | 55.0% | |
| AGTCCCTACAGGCTAGAGCA+AGG | - | chr3.1:79442119-79442138 | None:intergenic | 55.0% | |
| CCTATGGACCTCTGACATGC+AGG | + | chr3.1:79442418-79442437 | MS.gene013133:CDS | 55.0% | |
| CCTGCATGTCAGAGGTCCAT+AGG | - | chr3.1:79442421-79442440 | None:intergenic | 55.0% | |
| CGCCGCTTACAAATCTGCTC+AGG | + | chr3.1:79441093-79441112 | MS.gene013133:CDS | 55.0% | |
| CTCATTCCTTCCGCTGCTTC+CGG | + | chr3.1:79440968-79440987 | MS.gene013133:CDS | 55.0% | |
| CTCTTCCCGAGGTGAATGAG+CGG | - | chr3.1:79440639-79440658 | None:intergenic | 55.0% | |
| CTTGGAATCACCGGAAGCAG+CGG | - | chr3.1:79440981-79441000 | None:intergenic | 55.0% | |
| GAACAGAAAGAGGAGAGCCG+CGG | + | chr3.1:79440845-79440864 | MS.gene013133:CDS | 55.0% | |
| GACACCTTGCTCTAGCCTGT+AGG | + | chr3.1:79442112-79442131 | MS.gene013133:intron | 55.0% | |
| GCAAGATTGCAGGCACGATC+AGG | - | chr3.1:79441533-79441552 | None:intergenic | 55.0% | |
| TGAACTGGATACCCTTGGCG+AGG | + | chr3.1:79442343-79442362 | MS.gene013133:CDS | 55.0% | |
| TTGCTCTAGCCTGTAGGGAC+TGG | + | chr3.1:79442118-79442137 | MS.gene013133:intron | 55.0% | |
| CGCTGCTTCCGGTGATTCCA+AGG | + | chr3.1:79440979-79440998 | MS.gene013133:CDS | 60.0% | |
| CTCAGCAGCCTCCTTACGCT+CGG | - | chr3.1:79441065-79441084 | None:intergenic | 60.0% | |
| CTCTAGCCTGTAGGGACTGG+TGG | + | chr3.1:79442121-79442140 | MS.gene013133:intron | 60.0% | |
| GAATCACCGGAAGCAGCGGA+AGG | - | chr3.1:79440977-79440996 | None:intergenic | 60.0% | |
| TCGGAGCACGACGTGCTTCG+TGG | + | chr3.1:79440804-79440823 | MS.gene013133:CDS | 65.0% | |
| TGGCGGCCGCTCATTCACCT+CGG | + | chr3.1:79440630-79440649 | MS.gene013133:CDS | 65.0% | |
| TGGGCACCACCAGTCCCTAC+AGG | - | chr3.1:79442130-79442149 | None:intergenic | 65.0% | |
| ! | CAAGACTGGCGCCGAGCGTA+AGG | + | chr3.1:79441051-79441070 | MS.gene013133:CDS | 65.0% |
| AGAGGAGAGCCGCGGCAACG+AGG | + | chr3.1:79440853-79440872 | MS.gene013133:CDS | 70.0% | |
| GGCGGCCGCTCATTCACCTC+GGG | + | chr3.1:79440631-79440650 | MS.gene013133:CDS | 70.0% | |
| ! | GACTGGCGCCGAGCGTAAGG+AGG | + | chr3.1:79441054-79441073 | MS.gene013133:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79440629 | 79442591 | 79440629 | ID=MS.gene013133 |
| chr3.1 | mRNA | 79440629 | 79442591 | 79440629 | ID=MS.gene013133.t1;Parent=MS.gene013133 |
| chr3.1 | exon | 79440629 | 79441114 | 79440629 | ID=MS.gene013133.t1.exon1;Parent=MS.gene013133.t1 |
| chr3.1 | CDS | 79440629 | 79441114 | 79440629 | ID=cds.MS.gene013133.t1;Parent=MS.gene013133.t1 |
| chr3.1 | exon | 79441437 | 79441559 | 79441437 | ID=MS.gene013133.t1.exon2;Parent=MS.gene013133.t1 |
| chr3.1 | CDS | 79441437 | 79441559 | 79441437 | ID=cds.MS.gene013133.t1;Parent=MS.gene013133.t1 |
| chr3.1 | exon | 79442323 | 79442439 | 79442323 | ID=MS.gene013133.t1.exon3;Parent=MS.gene013133.t1 |
| chr3.1 | CDS | 79442323 | 79442439 | 79442323 | ID=cds.MS.gene013133.t1;Parent=MS.gene013133.t1 |
| chr3.1 | exon | 79442535 | 79442591 | 79442535 | ID=MS.gene013133.t1.exon4;Parent=MS.gene013133.t1 |
| chr3.1 | CDS | 79442535 | 79442591 | 79442535 | ID=cds.MS.gene013133.t1;Parent=MS.gene013133.t1 |
| Gene Sequence |
| Protein sequence |
