AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051153

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051153.t1 MTR_8g036015 99.375 160 1 0 1 160 1 160 2.21e-118 331
MS.gene051153.t1 MTR_5g015500 56.774 155 67 0 3 157 307 461 4.57e-58 189
MS.gene051153.t1 MTR_5g015500 56.774 155 67 0 3 157 347 501 1.23e-57 189
MS.gene051153.t1 MTR_7g105220 50.993 151 74 0 3 153 12 162 2.17e-54 169
MS.gene051153.t1 MTR_2g085075 50.658 152 75 0 2 153 463 614 6.91e-51 171
MS.gene051153.t1 MTR_8g079690 50.336 149 61 3 10 146 18 165 8.42e-41 140
MS.gene051153.t1 MTR_4g086760 50.331 151 62 4 10 148 18 167 3.91e-40 137
MS.gene051153.t1 MTR_4g086760 50.331 151 62 4 10 148 18 167 5.95e-40 138
MS.gene051153.t1 MTR_4g086760 50.331 151 62 4 10 148 18 167 6.82e-40 137
MS.gene051153.t1 MTR_7g095750 52.349 149 57 5 12 148 23 169 2.03e-37 135
MS.gene051153.t1 MTR_1g117010 47.586 145 71 4 9 149 93 236 1.05e-36 127
MS.gene051153.t1 MTR_1g117010 47.586 145 71 4 9 149 93 236 1.05e-36 127
MS.gene051153.t1 MTR_7g116340 52.206 136 53 3 10 134 18 152 1.27e-36 124
MS.gene051153.t1 MTR_7g110980 51.034 145 66 4 8 148 108 251 1.03e-35 124
MS.gene051153.t1 MTR_4g075290 46.835 158 66 6 10 152 18 172 3.18e-34 118
MS.gene051153.t1 MTR_1g085560 51.034 145 63 5 10 148 99 241 7.92e-34 119
MS.gene051153.t1 MTR_6g084140 39.157 166 93 2 1 158 1 166 4.68e-33 123
MS.gene051153.t1 MTR_6g084140 39.157 166 93 2 1 158 18 183 4.75e-33 123
MS.gene051153.t1 MTR_8g040180 48.951 143 62 4 10 142 32 173 5.13e-33 115
MS.gene051153.t1 MTR_3g117750 47.917 144 59 5 9 139 25 165 9.91e-33 115
MS.gene051153.t1 MTR_2g023120 44.654 159 84 3 3 158 15 172 3.83e-32 120
MS.gene051153.t1 MTR_3g070500 48.252 143 62 4 8 139 76 217 4.75e-32 114
MS.gene051153.t1 MTR_8g442420 38.554 166 94 2 1 158 1 166 8.05e-32 119
MS.gene051153.t1 MTR_3g463900 48.529 136 58 4 8 132 46 180 3.56e-31 111
MS.gene051153.t1 MTR_4g073650 44.853 136 63 4 8 132 58 192 1.26e-27 102
MS.gene051153.t1 MTR_3g070500 52.252 111 41 4 8 107 76 185 1.04e-24 94.4
MS.gene051153.t1 MTR_3g107660 40.000 130 65 3 15 132 29 157 1.14e-21 90.9
MS.gene051153.t1 MTR_1g011980 39.231 130 65 4 15 132 26 153 1.24e-19 85.1
MS.gene051153.t1 MTR_1g094065 33.775 151 92 3 4 153 83 226 8.44e-19 80.1
MS.gene051153.t1 MTR_1g035360 34.247 146 85 4 4 146 82 219 1.62e-18 79.3
MS.gene051153.t1 MTR_3g085705 42.268 97 52 2 46 142 33 125 1.42e-15 69.3
MS.gene051153.t1 MTR_5g039210 30.994 171 95 6 3 158 28 190 8.35e-14 66.2
MS.gene051153.t1 MTR_3g070500 47.191 89 35 4 8 85 76 163 4.80e-13 63.5
MS.gene051153.t1 MTR_5g039210 32.192 146 79 5 3 136 28 165 5.07e-13 64.3
MS.gene051153.t1 MTR_3g070500 48.235 85 32 4 8 81 76 159 7.13e-13 63.2
MS.gene051153.t1 MTR_8g036030 100.000 27 0 0 134 160 69 95 1.76e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051153.t1 AT1G01940 91.250 160 14 0 1 160 1 160 1.50e-111 313
MS.gene051153.t1 AT2G36130 52.318 151 72 0 3 153 12 162 5.80e-55 171
MS.gene051153.t1 AT5G67530 53.548 155 72 0 3 157 346 500 1.41e-54 181
MS.gene051153.t1 AT3G44600 51.316 152 74 0 2 153 477 628 1.51e-50 171
MS.gene051153.t1 AT3G63400 50.336 149 60 5 12 148 23 169 1.83e-38 135
MS.gene051153.t1 AT5G13120 50.355 141 65 4 10 146 103 242 4.20e-38 130
MS.gene051153.t1 AT5G13120 50.355 141 65 4 10 146 107 246 4.64e-38 130
MS.gene051153.t1 AT4G33060 47.917 144 71 3 3 143 15 157 6.37e-38 135
MS.gene051153.t1 AT3G63400 49.664 149 61 4 12 148 23 169 4.10e-37 134
MS.gene051153.t1 AT3G63400 49.664 149 61 4 12 148 23 169 4.10e-37 134
MS.gene051153.t1 AT3G63400 49.664 149 61 4 12 148 23 169 4.10e-37 134
MS.gene051153.t1 AT4G34870 50.000 146 57 4 7 139 15 157 8.34e-37 125
MS.gene051153.t1 AT3G62030 52.083 144 62 4 10 148 108 249 1.97e-35 124
MS.gene051153.t1 AT3G56070 45.283 159 74 4 10 157 18 174 2.08e-35 121
MS.gene051153.t1 AT3G56070 45.283 159 74 4 10 157 18 174 2.08e-35 121
MS.gene051153.t1 AT3G62030 52.083 144 62 4 10 148 109 250 2.18e-35 124
MS.gene051153.t1 AT3G62030 52.083 144 62 4 10 148 162 303 7.54e-35 124
MS.gene051153.t1 AT2G21130 50.355 141 58 4 10 139 19 158 1.39e-34 119
MS.gene051153.t1 AT2G15790 51.852 135 52 3 10 132 18 151 4.77e-34 122
MS.gene051153.t1 AT4G38740 48.227 141 61 3 10 139 18 157 5.31e-34 117
MS.gene051153.t1 AT3G55920 48.936 141 60 3 10 139 73 212 2.78e-33 117
MS.gene051153.t1 AT1G53720 37.952 166 95 2 1 158 1 166 8.94e-33 119
MS.gene051153.t1 AT1G53720 37.952 166 95 2 1 158 1 166 4.17e-32 119
MS.gene051153.t1 AT2G16600 46.853 143 60 4 10 139 19 158 1.87e-31 111
MS.gene051153.t1 AT2G29960 49.254 134 56 4 10 132 46 178 2.38e-31 112
MS.gene051153.t1 AT2G29960 49.254 134 56 4 10 132 46 178 2.38e-31 112
MS.gene051153.t1 AT5G58710 47.015 134 59 3 10 132 49 181 5.35e-29 105
MS.gene051153.t1 AT2G38730 46.528 144 64 5 10 142 46 187 1.27e-28 105
MS.gene051153.t1 AT4G34960 45.736 129 58 4 9 126 60 187 8.17e-26 98.2
MS.gene051153.t1 AT2G16600 43.939 132 58 3 10 139 19 136 2.19e-25 95.1
MS.gene051153.t1 AT2G29960 44.776 134 52 5 10 132 46 168 1.39e-24 94.4
MS.gene051153.t1 AT4G34960 47.273 110 46 4 9 107 60 168 2.51e-21 85.5
MS.gene051153.t1 AT4G32420 35.811 148 81 5 15 150 26 171 1.47e-17 79.3
MS.gene051153.t1 AT4G32420 35.811 148 81 5 15 150 26 171 1.47e-17 79.3
MS.gene051153.t1 AT4G32420 35.811 148 81 5 15 150 26 171 1.47e-17 79.3
MS.gene051153.t1 AT4G32420 35.811 148 81 5 15 150 26 171 1.47e-17 79.3
MS.gene051153.t1 AT2G47320 32.667 150 97 2 4 153 81 226 2.10e-17 76.3
MS.gene051153.t1 AT4G32420 38.168 131 68 4 15 133 26 155 7.41e-17 77.0
MS.gene051153.t1 AT1G53780 39.326 89 53 1 71 158 4 92 3.68e-14 69.3
MS.gene051153.t1 AT3G66654 28.188 149 106 1 5 153 85 232 5.47e-12 62.0
MS.gene051153.t1 AT3G66654 28.188 149 106 1 5 153 85 232 5.47e-12 62.0
MS.gene051153.t1 AT3G66654 28.188 149 106 1 5 153 85 232 5.47e-12 62.0
MS.gene051153.t1 AT3G66654 28.188 149 106 1 5 153 85 232 5.47e-12 62.0
MS.gene051153.t1 AT3G66654 28.188 149 106 1 5 153 85 232 5.47e-12 62.0
MS.gene051153.t1 AT1G26940 30.986 142 90 4 1 136 1 140 9.62e-12 60.8
MS.gene051153.t1 AT1G26940 31.429 140 88 4 3 136 34 171 1.63e-11 60.5

Find 44 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTCACCGCAATATTAA+AGG 0.210104 8.2:-63288634 MS.gene051153:CDS
AACTGACTTCCATTAGTATT+TGG 0.214721 8.2:+63287983 None:intergenic
GCAAAGGAGGGACTAGTATA+TGG 0.256203 8.2:-63288576 MS.gene051153:CDS
TTTGTTGTGCAGACTCCAAC+AGG 0.336703 8.2:-63287163 MS.gene051153:intron
ATGCATTCTAATCCACTTGC+TGG 0.376927 8.2:-63287094 MS.gene051153:CDS
AATGGACTATACACCGTGTT+TGG 0.381087 8.2:-63287929 MS.gene051153:CDS
TATACTAGTCCCTCCTTTGC+CGG 0.386166 8.2:+63288579 None:intergenic
GCTAAACAACCACATTTGAA+TGG 0.403722 8.2:-63287947 MS.gene051153:CDS
GTGTTTGGAAGAGTAATTCA+TGG 0.424305 8.2:-63287914 MS.gene051153:CDS
TGTGCGAGTGGTTACTTTGA+TGG 0.431366 8.2:-63288661 MS.gene051153:CDS
ATTTGAAGTTCTTGATCTCA+TGG 0.441468 8.2:-63287891 MS.gene051153:CDS
GTGCAGACTCCAACAGGGGC+AGG 0.442734 8.2:-63287157 MS.gene051153:intron
CAAAGGAGGGACTAGTATAT+GGG 0.449223 8.2:-63288575 MS.gene051153:CDS
CGAGATAAGAGAGTCTTTGA+AGG 0.460402 8.2:-63288536 MS.gene051153:intron
GTGCGAGTGGTTACTTTGAT+GGG 0.467141 8.2:-63288660 MS.gene051153:CDS
AGTTCTTGATCTCATGGAAA+AGG 0.470855 8.2:-63287885 MS.gene051153:intron
AACAGTGGTCCAAATACTAA+TGG 0.476528 8.2:-63287992 MS.gene051153:CDS
GGTGGAGATCCAACTGGTAC+CGG 0.512107 8.2:-63288598 MS.gene051153:CDS
GCAGACTCCAACAGGGGCAG+GGG 0.516609 8.2:-63287155 MS.gene051153:intron
ATCGACCGCTTGCAGAGATA+AGG 0.522750 8.2:-63287132 MS.gene051153:CDS
CCTCCTTTGCCGGTACCAGT+TGG 0.525405 8.2:+63288589 None:intergenic
TCATAAAACCTTTAATATTG+CGG 0.529387 8.2:+63288626 None:intergenic
GATCCAACTGGTACCGGCAA+AGG 0.534210 8.2:-63288592 MS.gene051153:CDS
GGTCGATCCCCTGCCCCTGT+TGG 0.540646 8.2:+63287148 None:intergenic
TGCAGACTCCAACAGGGGCA+GGG 0.545321 8.2:-63287156 MS.gene051153:intron
CCAACTGGTACCGGCAAAGG+AGG 0.546243 8.2:-63288589 MS.gene051153:CDS
TGCAAGGGGAATATTGTCAA+TGG 0.546666 8.2:-63288017 MS.gene051153:CDS
ATTCAAGGTGGAGATCCAAC+TGG 0.551039 8.2:-63288604 MS.gene051153:CDS
TGTTGTGCAGACTCCAACAG+GGG 0.570681 8.2:-63287161 MS.gene051153:intron
GTGTGTTCCAGCATAATGCA+AGG 0.572411 8.2:-63288033 MS.gene051153:intron
AGACCAGTCTATCCAGCAAG+TGG 0.583446 8.2:+63287082 None:intergenic
TGTGTTCCAGCATAATGCAA+GGG 0.592664 8.2:-63288032 MS.gene051153:intron
TTTCGCATTTGATGTCACCT+AGG 0.612378 8.2:+63288892 None:intergenic
ATGAATTACTCTTCCAAACA+CGG 0.615509 8.2:+63287916 None:intergenic
GTGTATAGTCCATTCAAATG+TGG 0.635991 8.2:+63287938 None:intergenic
TTGTTGTGCAGACTCCAACA+GGG 0.638282 8.2:-63287162 MS.gene051153:intron
GTTACTCTTCACACAAACCT+AGG 0.645766 8.2:-63288909 MS.gene051153:CDS
CAACTGGTACCGGCAAAGGA+GGG 0.648842 8.2:-63288588 MS.gene051153:CDS
TTGAGCCTTATCTCTGCAAG+CGG 0.665431 8.2:+63287127 None:intergenic
GTGTTCCAGCATAATGCAAG+GGG 0.668599 8.2:-63288031 MS.gene051153:intron
AAAGGAGGGACTAGTATATG+GGG 0.695332 8.2:-63288574 MS.gene051153:CDS
TTATGAAGTACGTACCTCGG+AGG 0.716745 8.2:+63288845 None:intergenic
ATATTGTCAATGGCTAACAG+TGG 0.731092 8.2:-63288007 MS.gene051153:CDS
CGAAGTCCCTAAAACCTCCG+AGG 0.749820 8.2:-63288859 MS.gene051153:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTTTTTTTTTTTTTTG+TGG + chr8.2:63288598-63288617 None:intergenic 10.0%
!! AAATAGAATGTAATCATAAT+AGG + chr8.2:63288726-63288745 None:intergenic 15.0%
!! ATTTGTTTATCAAAAAATCT+GGG - chr8.2:63288253-63288272 MS.gene051153:intron 15.0%
!! TCATAATAGGATATATTATT+TGG + chr8.2:63288713-63288732 None:intergenic 15.0%
!! TTTATAAAAACAAACGAAAT+AGG - chr8.2:63287680-63287699 MS.gene051153:intron 15.0%
!!! AAAAAAAAAAAAAGTATCAG+TGG - chr8.2:63288602-63288621 MS.gene051153:CDS 15.0%
!!! AATTTGTTTATCAAAAAATC+TGG - chr8.2:63288252-63288271 MS.gene051153:intron 15.0%
!!! TTATAAAAGTATTCATTGAA+TGG + chr8.2:63288551-63288570 None:intergenic 15.0%
!! AATATCAGAAATATGAAATC+TGG - chr8.2:63287821-63287840 MS.gene051153:intron 20.0%
!! ATAACCAATTGTTATGTTAA+CGG - chr8.2:63287268-63287287 MS.gene051153:intron 20.0%
!! TCATAAAACCTTTAATATTG+CGG + chr8.2:63287471-63287490 None:intergenic 20.0%
!! TCTTTAATGAATAGTTGAAT+GGG - chr8.2:63288496-63288515 MS.gene051153:intron 20.0%
!! TTCTTTAATGAATAGTTGAA+TGG - chr8.2:63288495-63288514 MS.gene051153:intron 20.0%
!!! AAAGAATTACATGATTTTAC+CGG + chr8.2:63287309-63287328 None:intergenic 20.0%
!!! ATTAAAGGTTTTATGATTCA+AGG - chr8.2:63287475-63287494 MS.gene051153:intron 20.0%
!!! CGATGTTTTAAAAATTGAAT+CGG + chr8.2:63288428-63288447 None:intergenic 20.0%
!!! CGATTCAATTTTTAAAACAT+CGG - chr8.2:63288426-63288445 MS.gene051153:intron 20.0%
! ACCAATTGAAACAACATAAT+AGG + chr8.2:63287333-63287352 None:intergenic 25.0%
! ATAAATGTGATGAAATAGCT+TGG + chr8.2:63287954-63287973 None:intergenic 25.0%
! ATATTTCACCGCAATATTAA+AGG - chr8.2:63287460-63287479 MS.gene051153:intron 25.0%
! CCAATTGAAACAACATAATA+GGG + chr8.2:63287332-63287351 None:intergenic 25.0%
! GGATATATTATTTGGATAGT+TGG + chr8.2:63288705-63288724 None:intergenic 25.0%
! TAACCAATTGTTATGTTAAC+GGG - chr8.2:63287269-63287288 MS.gene051153:intron 25.0%
! TCTTCTATTATTTGTTCAGT+CGG - chr8.2:63287163-63287182 MS.gene051153:intron 25.0%
! TTTAAAAATTGAATCGGACA+TGG + chr8.2:63288422-63288441 None:intergenic 25.0%
!! AAAATCCATTTTGAATGCAA+AGG + chr8.2:63287922-63287941 None:intergenic 25.0%
!!! ATCATACTTGTGCATTTTTT+TGG - chr8.2:63288817-63288836 MS.gene051153:intron 25.0%
!!! CTGTTCAGTTTTTAAAACAT+TGG + chr8.2:63288285-63288304 None:intergenic 25.0%
AAAGTATAACAGATTGCCTA+AGG + chr8.2:63287789-63287808 None:intergenic 30.0%
AAATAACCGAACTGAAGTAA+AGG + chr8.2:63288322-63288341 None:intergenic 30.0%
AAGTATCAGTGGAGAAAAAT+TGG - chr8.2:63288613-63288632 MS.gene051153:CDS 30.0%
AATAGTTGAATGGGATCATT+AGG - chr8.2:63288505-63288524 MS.gene051153:intron 30.0%
AGTATCAGTGGAGAAAAATT+GGG - chr8.2:63288614-63288633 MS.gene051153:CDS 30.0%
ATGAATTACTCTTCCAAACA+CGG + chr8.2:63288181-63288200 None:intergenic 30.0%
TAGAATTGACAAAGTATACG+CGG - chr8.2:63287706-63287725 MS.gene051153:intron 30.0%
! AACTGACTTCCATTAGTATT+TGG + chr8.2:63288114-63288133 None:intergenic 30.0%
! ATTTGAAGTTCTTGATCTCA+TGG - chr8.2:63288203-63288222 MS.gene051153:intron 30.0%
! TTGATTTGACAACAGAATGA+AGG - chr8.2:63288776-63288795 MS.gene051153:intron 30.0%
! TTTTCTTCACCAGATTTTCA+TGG - chr8.2:63288017-63288036 MS.gene051153:CDS 30.0%
!! AAAGGTTTTATGATTCAAGG+TGG - chr8.2:63287478-63287497 MS.gene051153:intron 30.0%
!! AATTGTTATGTTAACGGGTT+CGG - chr8.2:63287274-63287293 MS.gene051153:intron 30.0%
!! CCCTATTATGTTGTTTCAAT+TGG - chr8.2:63287329-63287348 MS.gene051153:intron 30.0%
!!! GTTAAGCATATTTTAGAGCA+GGG - chr8.2:63287621-63287640 MS.gene051153:intron 30.0%
!!! TGTTAAGCATATTTTAGAGC+AGG - chr8.2:63287620-63287639 MS.gene051153:intron 30.0%
!!! TTAAGCATATTTTAGAGCAG+GGG - chr8.2:63287622-63287641 MS.gene051153:intron 30.0%
AACAGTGGTCCAAATACTAA+TGG - chr8.2:63288102-63288121 MS.gene051153:intron 35.0%
AATTAGCGACCATGAAAATC+TGG + chr8.2:63288029-63288048 None:intergenic 35.0%
AGACACCTTTGCATTCAAAA+TGG - chr8.2:63287914-63287933 MS.gene051153:CDS 35.0%
AGTTCTTGATCTCATGGAAA+AGG - chr8.2:63288209-63288228 MS.gene051153:intron 35.0%
ATATTGTCAATGGCTAACAG+TGG - chr8.2:63288087-63288106 MS.gene051153:intron 35.0%
ATGTGTAGTATTTGAGTGCA+TGG + chr8.2:63288884-63288903 None:intergenic 35.0%
CGAAAACTAATGAATCGTGA+AGG + chr8.2:63288674-63288693 None:intergenic 35.0%
GAAATCGATGGATGAAAATG+AGG - chr8.2:63287736-63287755 MS.gene051153:intron 35.0%
GAACCCGTTAACATAACAAT+TGG + chr8.2:63287275-63287294 None:intergenic 35.0%
GCTAAACAACCACATTTGAA+TGG - chr8.2:63288147-63288166 MS.gene051153:intron 35.0%
GTGTATAGTCCATTCAAATG+TGG + chr8.2:63288159-63288178 None:intergenic 35.0%
GTGTTTGGAAGAGTAATTCA+TGG - chr8.2:63288180-63288199 MS.gene051153:intron 35.0%
TATTTGCTCCATAATGCACA+AGG + chr8.2:63287990-63288009 None:intergenic 35.0%
TTGAATGGGATCATTAGGAA+TGG - chr8.2:63288510-63288529 MS.gene051153:intron 35.0%
TTTCTGTCAAATGCTACCTT+AGG - chr8.2:63287770-63287789 MS.gene051153:intron 35.0%
! AGATTTTCATGGTCGCTAAT+TGG - chr8.2:63288028-63288047 MS.gene051153:intron 35.0%
! GAGTTTTACCTTGTGCATTA+TGG - chr8.2:63287979-63287998 MS.gene051153:CDS 35.0%
! GTTCGATCACAATTTTGTCT+TGG - chr8.2:63288347-63288366 MS.gene051153:intron 35.0%
!! ATTGTTATGTTAACGGGTTC+GGG - chr8.2:63287275-63287294 MS.gene051153:intron 35.0%
!! CTTCAGTTCGGTTATTTTCT+TGG - chr8.2:63288325-63288344 MS.gene051153:intron 35.0%
AAACATAGCCTGCAATTCTG+AGG + chr8.2:63288469-63288488 None:intergenic 40.0%
AATTGAATCGGACATGGAAC+AGG + chr8.2:63288416-63288435 None:intergenic 40.0%
ACTGAACAGAAACCTTGAAC+TGG - chr8.2:63288296-63288315 MS.gene051153:intron 40.0%
ATATTCCCCTTGCATTATGC+TGG + chr8.2:63288071-63288090 None:intergenic 40.0%
ATGCATTCTAATCCACTTGC+TGG - chr8.2:63289000-63289019 MS.gene051153:intron 40.0%
ATGGGATCATTAGGAATGGA+AGG - chr8.2:63288514-63288533 MS.gene051153:intron 40.0%
CATCAATCCAAACATAGCCT+AGG - chr8.2:63288746-63288765 MS.gene051153:intron 40.0%
CGAGATAAGAGAGTCTTTGA+AGG - chr8.2:63287558-63287577 MS.gene051153:intron 40.0%
GCAGTTAAACCATGACTCAA+AGG - chr8.2:63288385-63288404 MS.gene051153:intron 40.0%
GTCAAATCAAGTCAAGTCCT+AGG + chr8.2:63288766-63288785 None:intergenic 40.0%
GTTACTCTTCACACAAACCT+AGG - chr8.2:63287185-63287204 MS.gene051153:intron 40.0%
TCAGAATTGCAGGCTATGTT+TGG - chr8.2:63288468-63288487 MS.gene051153:intron 40.0%
TGCAAGGGGAATATTGTCAA+TGG - chr8.2:63288077-63288096 MS.gene051153:intron 40.0%
TGGGATCATTAGGAATGGAA+GGG - chr8.2:63288515-63288534 MS.gene051153:intron 40.0%
TGGTTATGAAGTACGTACCT+CGG + chr8.2:63287255-63287274 None:intergenic 40.0%
TGTGTTCCAGCATAATGCAA+GGG - chr8.2:63288062-63288081 MS.gene051153:intron 40.0%
TTTCGCATTTGATGTCACCT+AGG + chr8.2:63287205-63287224 None:intergenic 40.0%
! AAAACATCGGTTGAAGCTCA+AGG - chr8.2:63288439-63288458 MS.gene051153:intron 40.0%
! AAAGGAGGGACTAGTATATG+GGG - chr8.2:63287520-63287539 MS.gene051153:intron 40.0%
! CAAAGGAGGGACTAGTATAT+GGG - chr8.2:63287519-63287538 MS.gene051153:intron 40.0%
! TGCACTTGTTCAGTATTGGA+TGG - chr8.2:63288640-63288659 MS.gene051153:CDS 40.0%
!! AACTGGCCTTTACTTCAGTT+CGG - chr8.2:63288313-63288332 MS.gene051153:intron 40.0%
!! AATGGACTATACACCGTGTT+TGG - chr8.2:63288165-63288184 MS.gene051153:intron 40.0%
AAGGTGAACCTCAGAATTGC+AGG - chr8.2:63288458-63288477 MS.gene051153:intron 45.0%
ATTCAAGGTGGAGATCCAAC+TGG - chr8.2:63287490-63287509 MS.gene051153:intron 45.0%
CTGAAGTAAAGGCCAGTTCA+AGG + chr8.2:63288311-63288330 None:intergenic 45.0%
GCTGTGCACTTGTTCAGTAT+TGG - chr8.2:63288636-63288655 MS.gene051153:CDS 45.0%
GTCAAGTCCTAGGCTATGTT+TGG + chr8.2:63288756-63288775 None:intergenic 45.0%
GTGTGTTCCAGCATAATGCA+AGG - chr8.2:63288061-63288080 MS.gene051153:intron 45.0%
GTGTTCCAGCATAATGCAAG+GGG - chr8.2:63288063-63288082 MS.gene051153:intron 45.0%
TATACTAGTCCCTCCTTTGC+CGG + chr8.2:63287518-63287537 None:intergenic 45.0%
TTATGAAGTACGTACCTCGG+AGG + chr8.2:63287252-63287271 None:intergenic 45.0%
TTGTTGTGCAGACTCCAACA+GGG - chr8.2:63288932-63288951 MS.gene051153:intron 45.0%
! GCAAAGGAGGGACTAGTATA+TGG - chr8.2:63287518-63287537 MS.gene051153:intron 45.0%
! GTGCGAGTGGTTACTTTGAT+GGG - chr8.2:63287434-63287453 MS.gene051153:intron 45.0%
! TACGTACCTCGGAGGTTTTA+GGG + chr8.2:63287244-63287263 None:intergenic 45.0%
! TGTGCGAGTGGTTACTTTGA+TGG - chr8.2:63287433-63287452 MS.gene051153:intron 45.0%
! TTGAGCCTTATCTCTGCAAG+CGG + chr8.2:63288970-63288989 None:intergenic 45.0%
! TTTGTTGTGCAGACTCCAAC+AGG - chr8.2:63288931-63288950 MS.gene051153:intron 45.0%
!! TATGTTAACGGGTTCGGGTT+CGG - chr8.2:63287280-63287299 MS.gene051153:intron 45.0%
!! TTTTTAGCGCTTTGTGCGAG+TGG - chr8.2:63287421-63287440 MS.gene051153:intron 45.0%
ATCGACCGCTTGCAGAGATA+AGG - chr8.2:63288962-63288981 MS.gene051153:intron 50.0%
CAGGCAAGACCTTTGAGTCA+TGG + chr8.2:63288397-63288416 None:intergenic 50.0%
CGCGGTTTGACTGAAATCGA+TGG - chr8.2:63287724-63287743 MS.gene051153:intron 50.0%
CTACACACACAAGCATAGCG+CGG + chr8.2:63287596-63287615 None:intergenic 50.0%
TGTTGTGCAGACTCCAACAG+GGG - chr8.2:63288933-63288952 MS.gene051153:intron 50.0%
! GTACGTACCTCGGAGGTTTT+AGG + chr8.2:63287245-63287264 None:intergenic 50.0%
!! ATGTTAACGGGTTCGGGTTC+GGG - chr8.2:63287281-63287300 MS.gene051153:intron 50.0%
CGAAGTCCCTAAAACCTCCG+AGG - chr8.2:63287235-63287254 MS.gene051153:intron 55.0%
GGTGGAGATCCAACTGGTAC+CGG - chr8.2:63287496-63287515 MS.gene051153:intron 55.0%
!! CAACTGGTACCGGCAAAGGA+GGG - chr8.2:63287506-63287525 MS.gene051153:intron 55.0%
!! GATCCAACTGGTACCGGCAA+AGG - chr8.2:63287502-63287521 MS.gene051153:intron 55.0%
CACACACAAGCATAGCGCGG+CGG + chr8.2:63287593-63287612 None:intergenic 60.0%
CCTCCTTTGCCGGTACCAGT+TGG + chr8.2:63287508-63287527 None:intergenic 60.0%
TGCAGACTCCAACAGGGGCA+GGG - chr8.2:63288938-63288957 MS.gene051153:intron 60.0%
!! CCAACTGGTACCGGCAAAGG+AGG - chr8.2:63287505-63287524 MS.gene051153:intron 60.0%
GCAGACTCCAACAGGGGCAG+GGG - chr8.2:63288939-63288958 MS.gene051153:intron 65.0%
GTGCAGACTCCAACAGGGGC+AGG - chr8.2:63288937-63288956 MS.gene051153:intron 65.0%
! ACGGGTTCGGGTTCGGGTTC+CGG - chr8.2:63287287-63287306 MS.gene051153:intron 65.0%
GGTCGATCCCCTGCCCCTGT+TGG + chr8.2:63288949-63288968 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 63287090 63289026 63287090 ID=MS.gene051153
chr8.2 mRNA 63287090 63289026 63287090 ID=MS.gene051153.t1;Parent=MS.gene051153
chr8.2 exon 63289024 63289026 63289024 ID=MS.gene051153.t1.exon1;Parent=MS.gene051153.t1
chr8.2 CDS 63289024 63289026 63289024 ID=cds.MS.gene051153.t1;Parent=MS.gene051153.t1
chr8.2 exon 63288860 63288934 63288860 ID=MS.gene051153.t1.exon2;Parent=MS.gene051153.t1
chr8.2 CDS 63288860 63288934 63288860 ID=cds.MS.gene051153.t1;Parent=MS.gene051153.t1
chr8.2 exon 63288537 63288698 63288537 ID=MS.gene051153.t1.exon3;Parent=MS.gene051153.t1
chr8.2 CDS 63288537 63288698 63288537 ID=cds.MS.gene051153.t1;Parent=MS.gene051153.t1
chr8.2 exon 63287886 63288044 63287886 ID=MS.gene051153.t1.exon4;Parent=MS.gene051153.t1
chr8.2 CDS 63287886 63288044 63287886 ID=cds.MS.gene051153.t1;Parent=MS.gene051153.t1
chr8.2 exon 63287090 63287173 63287090 ID=MS.gene051153.t1.exon5;Parent=MS.gene051153.t1
chr8.2 CDS 63287090 63287173 63287090 ID=cds.MS.gene051153.t1;Parent=MS.gene051153.t1
Gene Sequence

>MS.gene051153

ATGGTAAGTGACAACACTCTTCTCTTCTCTTTAATCAATCTCTTGTTCTAACTAACTAACTAACTAACTCTTCTCTTCTATTATTTGTTCAGTCGGTTACTCTTCACACAAACCTAGGTGACATCAAATGCGAAATCTTCTGCGACGAAGTCCCTAAAACCTCCGAGGTACGTACTTCATAACCAATTGTTATGTTAACGGGTTCGGGTTCGGGTTCCGGTAAAATCATGTAATTCTTTCCCTATTATGTTGTTTCAATTGGTTGTTCGTTCTAGATTGATTGAAGTGTCGTAACTAACAGTTAAGTTTTCATGATTGTTCAATACAGAATTTTTTAGCGCTTTGTGCGAGTGGTTACTTTGATGGGACTATATTTCACCGCAATATTAAAGGTTTTATGATTCAAGGTGGAGATCCAACTGGTACCGGCAAAGGAGGGACTAGTATATGGGGAAAGAAATTCAACGACGAGATAAGAGAGTCTTTGAAGGTTAGTTCATCCGCCGCGCTATGCTTGTGTGTGTAGTATTTGTTAAGCATATTTTAGAGCAGGGGAAAACATACTGTTTAGATTTTTGTGTTTGATGCATTTTATAAAAACAAACGAAATAGGACGTAGAATTGACAAAGTATACGCGGTTTGACTGAAATCGATGGATGAAAATGAGGAAAACAGAACTTTTCTGTCAAATGCTACCTTAGGCAATCTGTTATACTTTTTAATCAATGCTAATATCAGAAATATGAAATCTGGTCTTATACATGTTACTTTTTTTAGCTTTGTAATAAGATAGATATACTGTTATCGATATGATCGAATTGAAAGACACCTTTGCATTCAAAATGGATTTTTAAATTACTCCAAGCTATTTCATCACATTTATTTTTAGAGTTTTACCTTGTGCATTATGGAGCAAATATATACATTTTTCTTCACCAGATTTTCATGGTCGCTAATTGGCTGTGTTTTTGTGTGTTCCAGCATAATGCAAGGGGAATATTGTCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATAAGTTATGCTAAACAACCACATTTGAATGGACTATACACCGTGTTTGGAAGAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGGTATATTAATCTATTGCTGATAATTTGTTTATCAAAAAATCTGGGTCATAGCCAATGTTTTAAAAACTGAACAGAAACCTTGAACTGGCCTTTACTTCAGTTCGGTTATTTTCTTGGTTCGATCACAATTTTGTCTTGGTTTTACTGTTTTAAAGCAGTTAAACCATGACTCAAAGGTCTTGCCTGTTCCATGTCCGATTCAATTTTTAAAACATCGGTTGAAGCTCAAGGTGAACCTCAGAATTGCAGGCTATGTTTGGATATTTCTTTAATGAATAGTTGAATGGGATCATTAGGAATGGAAGGGAATTATCATTCCATTCAATGAATACTTTTATAATACATTGAGTGAATTATTTCTTTTCCACAAAAAAAAAAAAAAAAGTATCAGTGGAGAAAAATTGGGCTGTGCACTTGTTCAGTATTGGATGGAATGAATTCCTTCACGATTCATTAGTTTTCGTCTTATTTCCAACTATCCAAATAATATATCCTATTATGATTACATTCTATTTCATCAATCCAAACATAGCCTAGGACTTGACTTGATTTGACAACAGAATGAAGGTCTACATTTTTCTTAGAAATCATACTTGTGCATTTTTTTGGTTACTGATATACACTTAAATCTCATCTAGATTTCATACACACCATGCACTCAAATACTACACATCTGAGTAAAGAATAAGTAATATACTTTTTTGTTGTGCAGACTCCAACAGGGGCAGGGGATCGACCGCTTGCAGAGATAAGGCTCAATCGTGTAACAATGCATTCTAATCCACTTGCTGGATAG
Protein sequence

>MS.gene051153.t1

MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYFDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTPTGAGDRPLAEIRLNRVTMHSNPLAG