Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23663.t1 | XP_013445004.1 | 99.4 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 1.00E-88 | 335.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23663.t1 | Q9LPC7 | 91.2 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 5.4e-86 | 318.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23663.t1 | G7ZW00 | 99.4 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 7.5e-89 | 335.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051153 | MS.gene23663 | 0.893579 | 5.51E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23663 | MS.gene024514 | PPI |
| MS.gene23663 | MS.gene063104 | PPI |
| MS.gene23663 | MS.gene003412 | PPI |
| MS.gene23663 | MS.gene007179 | PPI |
| MS.gene61767 | MS.gene23663 | PPI |
| MS.gene23663 | MS.gene04515 | PPI |
| MS.gene23663 | MS.gene052266 | PPI |
| MS.gene68752 | MS.gene23663 | PPI |
| MS.gene88451 | MS.gene23663 | PPI |
| MS.gene22872 | MS.gene23663 | PPI |
| MS.gene063787 | MS.gene23663 | PPI |
| MS.gene050574 | MS.gene23663 | PPI |
| MS.gene39668 | MS.gene23663 | PPI |
| MS.gene23663 | MS.gene04526 | PPI |
| MS.gene23663 | MS.gene048458 | PPI |
| MS.gene23663 | MS.gene050281 | PPI |
| MS.gene025980 | MS.gene23663 | PPI |
| MS.gene68153 | MS.gene23663 | PPI |
| MS.gene052269 | MS.gene23663 | PPI |
| MS.gene23663 | MS.gene28703 | PPI |
| MS.gene23663 | MS.gene28963 | PPI |
| MS.gene23663 | MS.gene014216 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23663.t1 | MTR_8g036015 | 99.375 | 160 | 1 | 0 | 1 | 160 | 1 | 160 | 2.21e-118 | 331 |
| MS.gene23663.t1 | MTR_5g015500 | 56.774 | 155 | 67 | 0 | 3 | 157 | 307 | 461 | 4.57e-58 | 189 |
| MS.gene23663.t1 | MTR_5g015500 | 56.774 | 155 | 67 | 0 | 3 | 157 | 347 | 501 | 1.23e-57 | 189 |
| MS.gene23663.t1 | MTR_7g105220 | 50.993 | 151 | 74 | 0 | 3 | 153 | 12 | 162 | 2.17e-54 | 169 |
| MS.gene23663.t1 | MTR_2g085075 | 50.658 | 152 | 75 | 0 | 2 | 153 | 463 | 614 | 6.91e-51 | 171 |
| MS.gene23663.t1 | MTR_8g079690 | 50.336 | 149 | 61 | 3 | 10 | 146 | 18 | 165 | 8.42e-41 | 140 |
| MS.gene23663.t1 | MTR_4g086760 | 50.331 | 151 | 62 | 4 | 10 | 148 | 18 | 167 | 3.91e-40 | 137 |
| MS.gene23663.t1 | MTR_4g086760 | 50.331 | 151 | 62 | 4 | 10 | 148 | 18 | 167 | 5.95e-40 | 138 |
| MS.gene23663.t1 | MTR_4g086760 | 50.331 | 151 | 62 | 4 | 10 | 148 | 18 | 167 | 6.82e-40 | 137 |
| MS.gene23663.t1 | MTR_7g095750 | 52.349 | 149 | 57 | 5 | 12 | 148 | 23 | 169 | 2.03e-37 | 135 |
| MS.gene23663.t1 | MTR_1g117010 | 47.586 | 145 | 71 | 4 | 9 | 149 | 93 | 236 | 1.05e-36 | 127 |
| MS.gene23663.t1 | MTR_1g117010 | 47.586 | 145 | 71 | 4 | 9 | 149 | 93 | 236 | 1.05e-36 | 127 |
| MS.gene23663.t1 | MTR_7g116340 | 52.206 | 136 | 53 | 3 | 10 | 134 | 18 | 152 | 1.27e-36 | 124 |
| MS.gene23663.t1 | MTR_7g110980 | 51.034 | 145 | 66 | 4 | 8 | 148 | 108 | 251 | 1.03e-35 | 124 |
| MS.gene23663.t1 | MTR_4g075290 | 46.835 | 158 | 66 | 6 | 10 | 152 | 18 | 172 | 3.18e-34 | 118 |
| MS.gene23663.t1 | MTR_1g085560 | 51.034 | 145 | 63 | 5 | 10 | 148 | 99 | 241 | 7.92e-34 | 119 |
| MS.gene23663.t1 | MTR_6g084140 | 39.157 | 166 | 93 | 2 | 1 | 158 | 1 | 166 | 4.68e-33 | 123 |
| MS.gene23663.t1 | MTR_6g084140 | 39.157 | 166 | 93 | 2 | 1 | 158 | 18 | 183 | 4.75e-33 | 123 |
| MS.gene23663.t1 | MTR_8g040180 | 48.951 | 143 | 62 | 4 | 10 | 142 | 32 | 173 | 5.13e-33 | 115 |
| MS.gene23663.t1 | MTR_3g117750 | 47.917 | 144 | 59 | 5 | 9 | 139 | 25 | 165 | 9.91e-33 | 115 |
| MS.gene23663.t1 | MTR_2g023120 | 44.654 | 159 | 84 | 3 | 3 | 158 | 15 | 172 | 3.83e-32 | 120 |
| MS.gene23663.t1 | MTR_3g070500 | 48.252 | 143 | 62 | 4 | 8 | 139 | 76 | 217 | 4.75e-32 | 114 |
| MS.gene23663.t1 | MTR_8g442420 | 38.554 | 166 | 94 | 2 | 1 | 158 | 1 | 166 | 8.05e-32 | 119 |
| MS.gene23663.t1 | MTR_3g463900 | 48.529 | 136 | 58 | 4 | 8 | 132 | 46 | 180 | 3.56e-31 | 111 |
| MS.gene23663.t1 | MTR_4g073650 | 44.853 | 136 | 63 | 4 | 8 | 132 | 58 | 192 | 1.26e-27 | 102 |
| MS.gene23663.t1 | MTR_3g070500 | 52.252 | 111 | 41 | 4 | 8 | 107 | 76 | 185 | 1.04e-24 | 94.4 |
| MS.gene23663.t1 | MTR_3g107660 | 40.000 | 130 | 65 | 3 | 15 | 132 | 29 | 157 | 1.14e-21 | 90.9 |
| MS.gene23663.t1 | MTR_1g011980 | 39.231 | 130 | 65 | 4 | 15 | 132 | 26 | 153 | 1.24e-19 | 85.1 |
| MS.gene23663.t1 | MTR_1g094065 | 33.775 | 151 | 92 | 3 | 4 | 153 | 83 | 226 | 8.44e-19 | 80.1 |
| MS.gene23663.t1 | MTR_1g035360 | 34.247 | 146 | 85 | 4 | 4 | 146 | 82 | 219 | 1.62e-18 | 79.3 |
| MS.gene23663.t1 | MTR_3g085705 | 42.268 | 97 | 52 | 2 | 46 | 142 | 33 | 125 | 1.42e-15 | 69.3 |
| MS.gene23663.t1 | MTR_5g039210 | 30.994 | 171 | 95 | 6 | 3 | 158 | 28 | 190 | 8.35e-14 | 66.2 |
| MS.gene23663.t1 | MTR_3g070500 | 47.191 | 89 | 35 | 4 | 8 | 85 | 76 | 163 | 4.80e-13 | 63.5 |
| MS.gene23663.t1 | MTR_5g039210 | 32.192 | 146 | 79 | 5 | 3 | 136 | 28 | 165 | 5.07e-13 | 64.3 |
| MS.gene23663.t1 | MTR_3g070500 | 48.235 | 85 | 32 | 4 | 8 | 81 | 76 | 159 | 7.13e-13 | 63.2 |
| MS.gene23663.t1 | MTR_8g036030 | 100.000 | 27 | 0 | 0 | 134 | 160 | 69 | 95 | 1.76e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23663.t1 | AT1G01940 | 91.250 | 160 | 14 | 0 | 1 | 160 | 1 | 160 | 1.50e-111 | 313 |
| MS.gene23663.t1 | AT2G36130 | 52.318 | 151 | 72 | 0 | 3 | 153 | 12 | 162 | 5.80e-55 | 171 |
| MS.gene23663.t1 | AT5G67530 | 53.548 | 155 | 72 | 0 | 3 | 157 | 346 | 500 | 1.41e-54 | 181 |
| MS.gene23663.t1 | AT3G44600 | 51.316 | 152 | 74 | 0 | 2 | 153 | 477 | 628 | 1.51e-50 | 171 |
| MS.gene23663.t1 | AT3G63400 | 50.336 | 149 | 60 | 5 | 12 | 148 | 23 | 169 | 1.83e-38 | 135 |
| MS.gene23663.t1 | AT5G13120 | 50.355 | 141 | 65 | 4 | 10 | 146 | 103 | 242 | 4.20e-38 | 130 |
| MS.gene23663.t1 | AT5G13120 | 50.355 | 141 | 65 | 4 | 10 | 146 | 107 | 246 | 4.64e-38 | 130 |
| MS.gene23663.t1 | AT4G33060 | 47.917 | 144 | 71 | 3 | 3 | 143 | 15 | 157 | 6.37e-38 | 135 |
| MS.gene23663.t1 | AT3G63400 | 49.664 | 149 | 61 | 4 | 12 | 148 | 23 | 169 | 4.10e-37 | 134 |
| MS.gene23663.t1 | AT3G63400 | 49.664 | 149 | 61 | 4 | 12 | 148 | 23 | 169 | 4.10e-37 | 134 |
| MS.gene23663.t1 | AT3G63400 | 49.664 | 149 | 61 | 4 | 12 | 148 | 23 | 169 | 4.10e-37 | 134 |
| MS.gene23663.t1 | AT4G34870 | 50.000 | 146 | 57 | 4 | 7 | 139 | 15 | 157 | 8.34e-37 | 125 |
| MS.gene23663.t1 | AT3G62030 | 52.083 | 144 | 62 | 4 | 10 | 148 | 108 | 249 | 1.97e-35 | 124 |
| MS.gene23663.t1 | AT3G56070 | 45.283 | 159 | 74 | 4 | 10 | 157 | 18 | 174 | 2.08e-35 | 121 |
| MS.gene23663.t1 | AT3G56070 | 45.283 | 159 | 74 | 4 | 10 | 157 | 18 | 174 | 2.08e-35 | 121 |
| MS.gene23663.t1 | AT3G62030 | 52.083 | 144 | 62 | 4 | 10 | 148 | 109 | 250 | 2.18e-35 | 124 |
| MS.gene23663.t1 | AT3G62030 | 52.083 | 144 | 62 | 4 | 10 | 148 | 162 | 303 | 7.54e-35 | 124 |
| MS.gene23663.t1 | AT2G21130 | 50.355 | 141 | 58 | 4 | 10 | 139 | 19 | 158 | 1.39e-34 | 119 |
| MS.gene23663.t1 | AT2G15790 | 51.852 | 135 | 52 | 3 | 10 | 132 | 18 | 151 | 4.77e-34 | 122 |
| MS.gene23663.t1 | AT4G38740 | 48.227 | 141 | 61 | 3 | 10 | 139 | 18 | 157 | 5.31e-34 | 117 |
| MS.gene23663.t1 | AT3G55920 | 48.936 | 141 | 60 | 3 | 10 | 139 | 73 | 212 | 2.78e-33 | 117 |
| MS.gene23663.t1 | AT1G53720 | 37.952 | 166 | 95 | 2 | 1 | 158 | 1 | 166 | 8.94e-33 | 119 |
| MS.gene23663.t1 | AT1G53720 | 37.952 | 166 | 95 | 2 | 1 | 158 | 1 | 166 | 4.17e-32 | 119 |
| MS.gene23663.t1 | AT2G16600 | 46.853 | 143 | 60 | 4 | 10 | 139 | 19 | 158 | 1.87e-31 | 111 |
| MS.gene23663.t1 | AT2G29960 | 49.254 | 134 | 56 | 4 | 10 | 132 | 46 | 178 | 2.38e-31 | 112 |
| MS.gene23663.t1 | AT2G29960 | 49.254 | 134 | 56 | 4 | 10 | 132 | 46 | 178 | 2.38e-31 | 112 |
| MS.gene23663.t1 | AT5G58710 | 47.015 | 134 | 59 | 3 | 10 | 132 | 49 | 181 | 5.35e-29 | 105 |
| MS.gene23663.t1 | AT2G38730 | 46.528 | 144 | 64 | 5 | 10 | 142 | 46 | 187 | 1.27e-28 | 105 |
| MS.gene23663.t1 | AT4G34960 | 45.736 | 129 | 58 | 4 | 9 | 126 | 60 | 187 | 8.17e-26 | 98.2 |
| MS.gene23663.t1 | AT2G16600 | 43.939 | 132 | 58 | 3 | 10 | 139 | 19 | 136 | 2.19e-25 | 95.1 |
| MS.gene23663.t1 | AT2G29960 | 44.776 | 134 | 52 | 5 | 10 | 132 | 46 | 168 | 1.39e-24 | 94.4 |
| MS.gene23663.t1 | AT4G34960 | 47.273 | 110 | 46 | 4 | 9 | 107 | 60 | 168 | 2.51e-21 | 85.5 |
| MS.gene23663.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene23663.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene23663.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene23663.t1 | AT4G32420 | 35.811 | 148 | 81 | 5 | 15 | 150 | 26 | 171 | 1.47e-17 | 79.3 |
| MS.gene23663.t1 | AT2G47320 | 32.667 | 150 | 97 | 2 | 4 | 153 | 81 | 226 | 2.10e-17 | 76.3 |
| MS.gene23663.t1 | AT4G32420 | 38.168 | 131 | 68 | 4 | 15 | 133 | 26 | 155 | 7.41e-17 | 77.0 |
| MS.gene23663.t1 | AT1G53780 | 39.326 | 89 | 53 | 1 | 71 | 158 | 4 | 92 | 3.68e-14 | 69.3 |
| MS.gene23663.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene23663.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene23663.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene23663.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene23663.t1 | AT3G66654 | 28.188 | 149 | 106 | 1 | 5 | 153 | 85 | 232 | 5.47e-12 | 62.0 |
| MS.gene23663.t1 | AT1G26940 | 30.986 | 142 | 90 | 4 | 1 | 136 | 1 | 140 | 9.62e-12 | 60.8 |
| MS.gene23663.t1 | AT1G26940 | 31.429 | 140 | 88 | 4 | 3 | 136 | 34 | 171 | 1.63e-11 | 60.5 |
Find 44 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTTCACCGCAATATTAA+AGG | 0.210104 | 8.1:-67172699 | MS.gene23663:CDS |
| AACTGACTTCCATTAGTATT+TGG | 0.214721 | 8.1:+67172048 | None:intergenic |
| GCAAAGGAGGGACTAGTATA+TGG | 0.256203 | 8.1:-67172641 | MS.gene23663:CDS |
| TTTGTTGTGCAGACTCCAAC+AGG | 0.336703 | 8.1:-67171226 | MS.gene23663:intron |
| AATGGACTATACACCGTGTT+TGG | 0.381087 | 8.1:-67171994 | MS.gene23663:CDS |
| TATACTAGTCCCTCCTTTGC+CGG | 0.386166 | 8.1:+67172644 | None:intergenic |
| ATGCATTCTAATCCACTTGC+TGG | 0.402070 | 8.1:-67171157 | MS.gene23663:CDS |
| GCTAAACAACCACATTTGAA+TGG | 0.403722 | 8.1:-67172012 | MS.gene23663:CDS |
| GTGTTTGGAAGAGTAATTCA+TGG | 0.424305 | 8.1:-67171979 | MS.gene23663:CDS |
| TGTGCGAGTGGTTACTTTGA+TGG | 0.431366 | 8.1:-67172726 | MS.gene23663:CDS |
| ATTTGAAGTTCTTGATCTCA+TGG | 0.441468 | 8.1:-67171956 | MS.gene23663:CDS |
| GTGCAGACTCCAACAGGGGC+AGG | 0.442734 | 8.1:-67171220 | MS.gene23663:intron |
| CAAAGGAGGGACTAGTATAT+GGG | 0.449223 | 8.1:-67172640 | MS.gene23663:CDS |
| CGAGATAAGAGAGTCTTTGA+AGG | 0.460402 | 8.1:-67172601 | MS.gene23663:intron |
| GTGCGAGTGGTTACTTTGAT+GGG | 0.467141 | 8.1:-67172725 | MS.gene23663:CDS |
| AGTTCTTGATCTCATGGAAA+AGG | 0.470855 | 8.1:-67171950 | MS.gene23663:intron |
| AACAGTGGTCCAAATACTAA+TGG | 0.476528 | 8.1:-67172057 | MS.gene23663:CDS |
| GGTGGAGATCCAACTGGTAC+CGG | 0.512107 | 8.1:-67172663 | MS.gene23663:CDS |
| GCAGACTCCAACAGGGGCAG+GGG | 0.516609 | 8.1:-67171218 | MS.gene23663:intron |
| ATCGACCGCTTGCAGAGATA+AGG | 0.522750 | 8.1:-67171195 | MS.gene23663:CDS |
| CCTCCTTTGCCGGTACCAGT+TGG | 0.525405 | 8.1:+67172654 | None:intergenic |
| TCATAAAACCTTTAATATTG+CGG | 0.529387 | 8.1:+67172691 | None:intergenic |
| GATCCAACTGGTACCGGCAA+AGG | 0.534210 | 8.1:-67172657 | MS.gene23663:CDS |
| GGTCGATCCCCTGCCCCTGT+TGG | 0.540646 | 8.1:+67171211 | None:intergenic |
| TGCAGACTCCAACAGGGGCA+GGG | 0.545321 | 8.1:-67171219 | MS.gene23663:intron |
| CCAACTGGTACCGGCAAAGG+AGG | 0.546243 | 8.1:-67172654 | MS.gene23663:CDS |
| TGCAAGGGGAATATTGTCAA+TGG | 0.546666 | 8.1:-67172082 | MS.gene23663:CDS |
| ATTCAAGGTGGAGATCCAAC+TGG | 0.551039 | 8.1:-67172669 | MS.gene23663:CDS |
| AGACCAGTCTAGCCAGCAAG+TGG | 0.559274 | 8.1:+67171145 | None:intergenic |
| TGTTGTGCAGACTCCAACAG+GGG | 0.570681 | 8.1:-67171224 | MS.gene23663:intron |
| GTGTGTTCCAGCATAATGCA+AGG | 0.572411 | 8.1:-67172098 | MS.gene23663:intron |
| TGTGTTCCAGCATAATGCAA+GGG | 0.592664 | 8.1:-67172097 | MS.gene23663:intron |
| TTTCGCATTTGATGTCACCT+AGG | 0.612378 | 8.1:+67172957 | None:intergenic |
| ATGAATTACTCTTCCAAACA+CGG | 0.615509 | 8.1:+67171981 | None:intergenic |
| GTGTATAGTCCATTCAAATG+TGG | 0.635991 | 8.1:+67172003 | None:intergenic |
| TTGTTGTGCAGACTCCAACA+GGG | 0.638282 | 8.1:-67171225 | MS.gene23663:intron |
| GTTACTCTTCACACAAACCT+AGG | 0.645766 | 8.1:-67172974 | MS.gene23663:CDS |
| CAACTGGTACCGGCAAAGGA+GGG | 0.648842 | 8.1:-67172653 | MS.gene23663:CDS |
| TTGAGCCTTATCTCTGCAAG+CGG | 0.665431 | 8.1:+67171190 | None:intergenic |
| GTGTTCCAGCATAATGCAAG+GGG | 0.668599 | 8.1:-67172096 | MS.gene23663:intron |
| AAAGGAGGGACTAGTATATG+GGG | 0.695332 | 8.1:-67172639 | MS.gene23663:CDS |
| TTATGAAGTACGTACCTCGG+AGG | 0.716745 | 8.1:+67172910 | None:intergenic |
| ATATTGTCAATGGCTAACAG+TGG | 0.731092 | 8.1:-67172072 | MS.gene23663:CDS |
| CGAAGTCCCTAAAACCTCCG+AGG | 0.749820 | 8.1:-67172924 | MS.gene23663:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGAATGTAATCATAAT+AGG | + | chr8.1:67172787-67172806 | None:intergenic | 15.0% |
| !! | ATTTGTTTATCAAAAAATCT+GGG | - | chr8.1:67172316-67172335 | MS.gene23663:intron | 15.0% |
| !! | TCATAATAGGATATATTATT+TGG | + | chr8.1:67172774-67172793 | None:intergenic | 15.0% |
| !! | TTTATAAAAACAAACGAAAT+AGG | - | chr8.1:67171743-67171762 | MS.gene23663:intron | 15.0% |
| !!! | AAAAAAAAAAAAAGTATCAG+TGG | - | chr8.1:67172663-67172682 | MS.gene23663:CDS | 15.0% |
| !!! | AATTTGTTTATCAAAAAATC+TGG | - | chr8.1:67172315-67172334 | MS.gene23663:intron | 15.0% |
| !!! | GATACTTTTTTTTTTTTTTG+TGG | + | chr8.1:67172661-67172680 | None:intergenic | 15.0% |
| !! | AATATCAGAAATATGAAATC+TGG | - | chr8.1:67171884-67171903 | MS.gene23663:intron | 20.0% |
| !! | ATAACCAATTGTTATGTTAA+CGG | - | chr8.1:67171331-67171350 | MS.gene23663:intron | 20.0% |
| !! | TCATAAAACCTTTAATATTG+CGG | + | chr8.1:67171534-67171553 | None:intergenic | 20.0% |
| !!! | AAAGAATTACATGATTTTAC+CGG | + | chr8.1:67171372-67171391 | None:intergenic | 20.0% |
| !!! | ATTAAAGGTTTTATGATTCA+AGG | - | chr8.1:67171538-67171557 | MS.gene23663:intron | 20.0% |
| !!! | CGATGTTTTAAAAATTGAAT+CGG | + | chr8.1:67172491-67172510 | None:intergenic | 20.0% |
| !!! | CGATTCAATTTTTAAAACAT+CGG | - | chr8.1:67172489-67172508 | MS.gene23663:intron | 20.0% |
| !!! | TTTTAAAAGTATTCATCGAA+TGG | + | chr8.1:67172614-67172633 | None:intergenic | 20.0% |
| ! | ACCAATTGAAACAACATAAT+AGG | + | chr8.1:67171396-67171415 | None:intergenic | 25.0% |
| ! | ATAAATGTGATGAAATAGCT+TGG | + | chr8.1:67172017-67172036 | None:intergenic | 25.0% |
| ! | ATATTTCACCGCAATATTAA+AGG | - | chr8.1:67171523-67171542 | MS.gene23663:intron | 25.0% |
| ! | CCAATTGAAACAACATAATA+GGG | + | chr8.1:67171395-67171414 | None:intergenic | 25.0% |
| ! | GGATATATTATTTGGATAGT+TGG | + | chr8.1:67172766-67172785 | None:intergenic | 25.0% |
| ! | TAACCAATTGTTATGTTAAC+GGG | - | chr8.1:67171332-67171351 | MS.gene23663:intron | 25.0% |
| ! | TCTTCTATTATTTGTTCAGT+CGG | - | chr8.1:67171226-67171245 | MS.gene23663:intron | 25.0% |
| ! | TTTAAAAATTGAATCGGACA+TGG | + | chr8.1:67172485-67172504 | None:intergenic | 25.0% |
| !! | AAAATCCATTTTGAATGCAA+AGG | + | chr8.1:67171985-67172004 | None:intergenic | 25.0% |
| !!! | CTGTTCAGTTTTTAAAACAT+TGG | + | chr8.1:67172348-67172367 | None:intergenic | 25.0% |
| AAAGTATAACAGATTGCCTA+AGG | + | chr8.1:67171852-67171871 | None:intergenic | 30.0% | |
| AAATAACCGAACTGAAGTAA+AGG | + | chr8.1:67172385-67172404 | None:intergenic | 30.0% | |
| AAGTATCAGTGGAGAAAAAT+TGG | - | chr8.1:67172674-67172693 | MS.gene23663:CDS | 30.0% | |
| AATAGTTGAATGCGATCATT+AGG | - | chr8.1:67172568-67172587 | MS.gene23663:intron | 30.0% | |
| AGTATCAGTGGAGAAAAATT+GGG | - | chr8.1:67172675-67172694 | MS.gene23663:CDS | 30.0% | |
| ATGAATTACTCTTCCAAACA+CGG | + | chr8.1:67172244-67172263 | None:intergenic | 30.0% | |
| ATGTTTAGTATTTGAGTGCA+TGG | + | chr8.1:67172947-67172966 | None:intergenic | 30.0% | |
| TAGAATTGACAAAGTATACG+CGG | - | chr8.1:67171769-67171788 | MS.gene23663:intron | 30.0% | |
| ! | AACTGACTTCCATTAGTATT+TGG | + | chr8.1:67172177-67172196 | None:intergenic | 30.0% |
| ! | ATTTGAAGTTCTTGATCTCA+TGG | - | chr8.1:67172266-67172285 | MS.gene23663:intron | 30.0% |
| ! | TTGATTTGACAACAGAATGA+AGG | - | chr8.1:67172837-67172856 | MS.gene23663:intron | 30.0% |
| ! | TTTTCTTCACCAGATTTTCA+TGG | - | chr8.1:67172080-67172099 | MS.gene23663:CDS | 30.0% |
| !! | AAAGGTTTTATGATTCAAGG+TGG | - | chr8.1:67171541-67171560 | MS.gene23663:intron | 30.0% |
| !! | AATTGTTATGTTAACGGGTT+CGG | - | chr8.1:67171337-67171356 | MS.gene23663:intron | 30.0% |
| !! | CCCTATTATGTTGTTTCAAT+TGG | - | chr8.1:67171392-67171411 | MS.gene23663:intron | 30.0% |
| !!! | GTTAAGCATATTTTAGAGCA+GGG | - | chr8.1:67171684-67171703 | MS.gene23663:intron | 30.0% |
| !!! | TGTTAAGCATATTTTAGAGC+AGG | - | chr8.1:67171683-67171702 | MS.gene23663:intron | 30.0% |
| !!! | TTAAGCATATTTTAGAGCAG+GGG | - | chr8.1:67171685-67171704 | MS.gene23663:intron | 30.0% |
| AACAGTGGTCCAAATACTAA+TGG | - | chr8.1:67172165-67172184 | MS.gene23663:intron | 35.0% | |
| AATTAGCGACCATGAAAATC+TGG | + | chr8.1:67172092-67172111 | None:intergenic | 35.0% | |
| AGACACCTTTGCATTCAAAA+TGG | - | chr8.1:67171977-67171996 | MS.gene23663:CDS | 35.0% | |
| AGTTCTTGATCTCATGGAAA+AGG | - | chr8.1:67172272-67172291 | MS.gene23663:intron | 35.0% | |
| ATATTGTCAATGGCTAACAG+TGG | - | chr8.1:67172150-67172169 | MS.gene23663:intron | 35.0% | |
| ATCAATCCAAACATAGCCTA+GGG | - | chr8.1:67172808-67172827 | MS.gene23663:intron | 35.0% | |
| CGAAAACTAATGAATCGTGA+AGG | + | chr8.1:67172735-67172754 | None:intergenic | 35.0% | |
| GAAATCGATGGATGAAAATG+AGG | - | chr8.1:67171799-67171818 | MS.gene23663:intron | 35.0% | |
| GAACCCGTTAACATAACAAT+TGG | + | chr8.1:67171338-67171357 | None:intergenic | 35.0% | |
| GCTAAACAACCACATTTGAA+TGG | - | chr8.1:67172210-67172229 | MS.gene23663:intron | 35.0% | |
| GTGTATAGTCCATTCAAATG+TGG | + | chr8.1:67172222-67172241 | None:intergenic | 35.0% | |
| GTGTTTGGAAGAGTAATTCA+TGG | - | chr8.1:67172243-67172262 | MS.gene23663:intron | 35.0% | |
| TATTTGCTCCATAATGCACA+AGG | + | chr8.1:67172053-67172072 | None:intergenic | 35.0% | |
| TTGAATGCGATCATTAGGAA+TGG | - | chr8.1:67172573-67172592 | MS.gene23663:intron | 35.0% | |
| TTTCTGTCAAATGCTACCTT+AGG | - | chr8.1:67171833-67171852 | MS.gene23663:intron | 35.0% | |
| ! | AGATTTTCATGGTCGCTAAT+TGG | - | chr8.1:67172091-67172110 | MS.gene23663:intron | 35.0% |
| ! | GAGTTTTACCTTGTGCATTA+TGG | - | chr8.1:67172042-67172061 | MS.gene23663:CDS | 35.0% |
| ! | GTTCGATCACAATTTTGTCT+TGG | - | chr8.1:67172410-67172429 | MS.gene23663:intron | 35.0% |
| !! | ATTGTTATGTTAACGGGTTC+GGG | - | chr8.1:67171338-67171357 | MS.gene23663:intron | 35.0% |
| !! | CTTCAGTTCGGTTATTTTCT+TGG | - | chr8.1:67172388-67172407 | MS.gene23663:intron | 35.0% |
| AAACATAGCCTGCAATTGTG+AGG | + | chr8.1:67172532-67172551 | None:intergenic | 40.0% | |
| AATTGAATCGGACATGGAAC+AGG | + | chr8.1:67172479-67172498 | None:intergenic | 40.0% | |
| ACTGAACAGAAACCTTGAAC+TGG | - | chr8.1:67172359-67172378 | MS.gene23663:intron | 40.0% | |
| ATATTCCCCTTGCATTATGC+TGG | + | chr8.1:67172134-67172153 | None:intergenic | 40.0% | |
| ATGCATTCTAATCCACTTGC+TGG | - | chr8.1:67173065-67173084 | MS.gene23663:intron | 40.0% | |
| ATGCGATCATTAGGAATGGA+AGG | - | chr8.1:67172577-67172596 | MS.gene23663:intron | 40.0% | |
| CATCAATCCAAACATAGCCT+AGG | - | chr8.1:67172807-67172826 | MS.gene23663:intron | 40.0% | |
| CGAGATAAGAGAGTCTTTGA+AGG | - | chr8.1:67171621-67171640 | MS.gene23663:intron | 40.0% | |
| GCAGTTAAACCTTGACTCAA+AGG | - | chr8.1:67172448-67172467 | MS.gene23663:intron | 40.0% | |
| GTGTGTGTGAAATCTAGATG+AGG | + | chr8.1:67172925-67172944 | None:intergenic | 40.0% | |
| GTTACTCTTCACACAAACCT+AGG | - | chr8.1:67171248-67171267 | MS.gene23663:intron | 40.0% | |
| TGCAAGGGGAATATTGTCAA+TGG | - | chr8.1:67172140-67172159 | MS.gene23663:intron | 40.0% | |
| TGCGATCATTAGGAATGGAA+GGG | - | chr8.1:67172578-67172597 | MS.gene23663:intron | 40.0% | |
| TGGTTATGAAGTACGTACCT+CGG | + | chr8.1:67171318-67171337 | None:intergenic | 40.0% | |
| TGTGTTCCAGCATAATGCAA+GGG | - | chr8.1:67172125-67172144 | MS.gene23663:intron | 40.0% | |
| TTTCGCATTTGATGTCACCT+AGG | + | chr8.1:67171268-67171287 | None:intergenic | 40.0% | |
| ! | AAAACATCGGTTGAAGCTCA+AGG | - | chr8.1:67172502-67172521 | MS.gene23663:intron | 40.0% |
| ! | AAAGGAGGGACTAGTATATG+GGG | - | chr8.1:67171583-67171602 | MS.gene23663:intron | 40.0% |
| ! | CAAAGGAGGGACTAGTATAT+GGG | - | chr8.1:67171582-67171601 | MS.gene23663:intron | 40.0% |
| ! | TGCACTTGTTCAGTATTGGA+TGG | - | chr8.1:67172701-67172720 | MS.gene23663:CDS | 40.0% |
| !! | AACTGGCCTTTACTTCAGTT+CGG | - | chr8.1:67172376-67172395 | MS.gene23663:intron | 40.0% |
| !! | AATGGACTATACACCGTGTT+TGG | - | chr8.1:67172228-67172247 | MS.gene23663:intron | 40.0% |
| AAGGTGAACCTCACAATTGC+AGG | - | chr8.1:67172521-67172540 | MS.gene23663:intron | 45.0% | |
| ATTCAAGGTGGAGATCCAAC+TGG | - | chr8.1:67171553-67171572 | MS.gene23663:intron | 45.0% | |
| CTGAAGTAAAGGCCAGTTCA+AGG | + | chr8.1:67172374-67172393 | None:intergenic | 45.0% | |
| GCTGTGCACTTGTTCAGTAT+TGG | - | chr8.1:67172697-67172716 | MS.gene23663:CDS | 45.0% | |
| GTCAAATCAAGTCAAGCCCT+AGG | + | chr8.1:67172827-67172846 | None:intergenic | 45.0% | |
| GTGTGTTCCAGCATAATGCA+AGG | - | chr8.1:67172124-67172143 | MS.gene23663:intron | 45.0% | |
| GTGTTCCAGCATAATGCAAG+GGG | - | chr8.1:67172126-67172145 | MS.gene23663:intron | 45.0% | |
| TATACTAGTCCCTCCTTTGC+CGG | + | chr8.1:67171581-67171600 | None:intergenic | 45.0% | |
| TTATGAAGTACGTACCTCGG+AGG | + | chr8.1:67171315-67171334 | None:intergenic | 45.0% | |
| TTGTTGTGCAGACTCCAACA+GGG | - | chr8.1:67172997-67173016 | MS.gene23663:intron | 45.0% | |
| ! | GCAAAGGAGGGACTAGTATA+TGG | - | chr8.1:67171581-67171600 | MS.gene23663:intron | 45.0% |
| ! | GTGCGAGTGGTTACTTTGAT+GGG | - | chr8.1:67171497-67171516 | MS.gene23663:intron | 45.0% |
| ! | TACGTACCTCGGAGGTTTTA+GGG | + | chr8.1:67171307-67171326 | None:intergenic | 45.0% |
| ! | TGTGCGAGTGGTTACTTTGA+TGG | - | chr8.1:67171496-67171515 | MS.gene23663:intron | 45.0% |
| ! | TTGAGCCTTATCTCTGCAAG+CGG | + | chr8.1:67173035-67173054 | None:intergenic | 45.0% |
| ! | TTTGTTGTGCAGACTCCAAC+AGG | - | chr8.1:67172996-67173015 | MS.gene23663:intron | 45.0% |
| !! | TATGTTAACGGGTTCGGGTT+CGG | - | chr8.1:67171343-67171362 | MS.gene23663:intron | 45.0% |
| !! | TTTTTAGCGCTTTGTGCGAG+TGG | - | chr8.1:67171484-67171503 | MS.gene23663:intron | 45.0% |
| ATCGACCGCTTGCAGAGATA+AGG | - | chr8.1:67173027-67173046 | MS.gene23663:intron | 50.0% | |
| CAGGCAAGACCTTTGAGTCA+AGG | + | chr8.1:67172460-67172479 | None:intergenic | 50.0% | |
| CGCGGTTTGACTGAAATCGA+TGG | - | chr8.1:67171787-67171806 | MS.gene23663:intron | 50.0% | |
| CTACACACACAAGCATAGCG+CGG | + | chr8.1:67171659-67171678 | None:intergenic | 50.0% | |
| GTCAAGCCCTAGGCTATGTT+TGG | + | chr8.1:67172817-67172836 | None:intergenic | 50.0% | |
| TGTTGTGCAGACTCCAACAG+GGG | - | chr8.1:67172998-67173017 | MS.gene23663:intron | 50.0% | |
| ! | GTACGTACCTCGGAGGTTTT+AGG | + | chr8.1:67171308-67171327 | None:intergenic | 50.0% |
| !! | ATGTTAACGGGTTCGGGTTC+GGG | - | chr8.1:67171344-67171363 | MS.gene23663:intron | 50.0% |
| CGAAGTCCCTAAAACCTCCG+AGG | - | chr8.1:67171298-67171317 | MS.gene23663:intron | 55.0% | |
| GGTGGAGATCCAACTGGTAC+CGG | - | chr8.1:67171559-67171578 | MS.gene23663:intron | 55.0% | |
| !! | CAACTGGTACCGGCAAAGGA+GGG | - | chr8.1:67171569-67171588 | MS.gene23663:intron | 55.0% |
| !! | GATCCAACTGGTACCGGCAA+AGG | - | chr8.1:67171565-67171584 | MS.gene23663:intron | 55.0% |
| CACACACAAGCATAGCGCGG+CGG | + | chr8.1:67171656-67171675 | None:intergenic | 60.0% | |
| CCTCCTTTGCCGGTACCAGT+TGG | + | chr8.1:67171571-67171590 | None:intergenic | 60.0% | |
| TGCAGACTCCAACAGGGGCA+GGG | - | chr8.1:67173003-67173022 | MS.gene23663:intron | 60.0% | |
| !! | CCAACTGGTACCGGCAAAGG+AGG | - | chr8.1:67171568-67171587 | MS.gene23663:intron | 60.0% |
| GCAGACTCCAACAGGGGCAG+GGG | - | chr8.1:67173004-67173023 | MS.gene23663:intron | 65.0% | |
| GTGCAGACTCCAACAGGGGC+AGG | - | chr8.1:67173002-67173021 | MS.gene23663:intron | 65.0% | |
| ! | ACGGGTTCGGGTTCGGGTTC+CGG | - | chr8.1:67171350-67171369 | MS.gene23663:intron | 65.0% |
| GGTCGATCCCCTGCCCCTGT+TGG | + | chr8.1:67173014-67173033 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 67171153 | 67173091 | 67171153 | ID=MS.gene23663 |
| chr8.1 | mRNA | 67171153 | 67173091 | 67171153 | ID=MS.gene23663.t1;Parent=MS.gene23663 |
| chr8.1 | exon | 67173089 | 67173091 | 67173089 | ID=MS.gene23663.t1.exon1;Parent=MS.gene23663.t1 |
| chr8.1 | CDS | 67173089 | 67173091 | 67173089 | ID=cds.MS.gene23663.t1;Parent=MS.gene23663.t1 |
| chr8.1 | exon | 67172925 | 67172999 | 67172925 | ID=MS.gene23663.t1.exon2;Parent=MS.gene23663.t1 |
| chr8.1 | CDS | 67172925 | 67172999 | 67172925 | ID=cds.MS.gene23663.t1;Parent=MS.gene23663.t1 |
| chr8.1 | exon | 67172602 | 67172763 | 67172602 | ID=MS.gene23663.t1.exon3;Parent=MS.gene23663.t1 |
| chr8.1 | CDS | 67172602 | 67172763 | 67172602 | ID=cds.MS.gene23663.t1;Parent=MS.gene23663.t1 |
| chr8.1 | exon | 67171951 | 67172109 | 67171951 | ID=MS.gene23663.t1.exon4;Parent=MS.gene23663.t1 |
| chr8.1 | CDS | 67171951 | 67172109 | 67171951 | ID=cds.MS.gene23663.t1;Parent=MS.gene23663.t1 |
| chr8.1 | exon | 67171153 | 67171236 | 67171153 | ID=MS.gene23663.t1.exon5;Parent=MS.gene23663.t1 |
| chr8.1 | CDS | 67171153 | 67171236 | 67171153 | ID=cds.MS.gene23663.t1;Parent=MS.gene23663.t1 |
| Gene Sequence |
| Protein sequence |
