AlfalfaGEDB | MS.gene029301

M. sativa cultivar XinJiangDaYe / MS.gene029301

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF13812.9 PF14559.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029301.t1	XP_024628008.1	95.4	584	27	0	1	584	84	667	0.00E+00	1138.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029301.t1	Q9FLZ9	53.8	584	267	2	1	581	86	669	8.6e-190	664.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029301.t1	A0A396JYG2	95.4	584	27	0	1	584	84	667	0.0e+00	1138.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene029301	PPI
MS.gene016743	MS.gene029301	PPI
MS.gene029301	MS.gene70806	PPI
MS.gene029301	MS.gene070510	PPI
MS.gene029301	MS.gene055229	PPI
MS.gene029301	MS.gene46145	PPI
MS.gene029301	MS.gene055230	PPI
MS.gene029301	MS.gene89346	PPI
MS.gene029301	MS.gene055225	PPI
MS.gene029301	MS.gene46138	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029301.t1	MTR_1g112500	95.181	581	28	0	1	581	84	664	0.0	1160
MS.gene029301.t1	MTR_1g112500	27.586	464	331	4	53	514	34	494	3.11e-52	191
MS.gene029301.t1	MTR_1g112500	24.104	307	226	6	248	553	27	327	7.55e-15	78.2
MS.gene029301.t1	MTR_1g112500	28.689	122	84	2	337	457	15	134	8.83e-12	68.6
MS.gene029301.t1	MTR_8g086560	38.038	581	356	3	1	581	166	742	3.86e-135	416
MS.gene029301.t1	MTR_8g086560	30.917	469	318	4	33	500	96	559	2.91e-68	238
MS.gene029301.t1	MTR_8g086560	28.846	312	216	4	205	516	68	373	3.70e-27	117
MS.gene029301.t1	MTR_3g011950	40.145	553	326	3	32	583	138	686	5.25e-135	413
MS.gene029301.t1	MTR_3g011950	29.718	461	320	3	58	518	61	517	3.66e-60	214
MS.gene029301.t1	MTR_3g011940	37.393	583	362	2	1	583	89	668	1.48e-134	413

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029301.t1	AT5G39350	53.767	584	267	2	1	581	86	669	0.0	668
MS.gene029301.t1	AT5G39350	27.623	467	328	5	58	518	41	503	3.47e-48	179
MS.gene029301.t1	AT4G18750	39.931	576	342	3	7	581	172	744	1.32e-147	447
MS.gene029301.t1	AT4G18750	29.122	467	321	5	2	465	68	527	9.19e-61	216
MS.gene029301.t1	AT4G18750	30.607	428	271	6	1	415	267	681	1.90e-54	199
MS.gene029301.t1	AT3G01580	39.478	575	337	7	13	581	43	612	9.41e-143	428
MS.gene029301.t1	AT3G01580	30.562	409	281	3	1	406	133	541	2.48e-57	204
MS.gene029301.t1	AT3G01580	28.146	437	307	6	85	518	13	445	5.96e-57	203
MS.gene029301.t1	AT1G11290	38.593	583	355	2	1	583	106	685	1.49e-138	422
MS.gene029301.t1	AT1G11290	27.826	460	328	3	59	518	62	517	4.61e-59	211

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Find 150 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTTAAGTGCATCAT+TGG	0.362764	1.4:+86405113	None:intergenic
AAAGCATGGATACGGTAAAA+GGG	0.579278	1.4:-86403906	MS.gene029301:CDS
AACATGTTAAGTGCATCATT+GGG	0.548699	1.4:+86405114	None:intergenic
AACTGGGAGAGATAGCTGCT+AGG	0.672806	1.4:-86403580	MS.gene029301:CDS
AACTTTATGCTGCTGTAGGA+AGG	0.526788	1.4:-86403505	MS.gene029301:CDS
AAGACAAGGATATTATTATT+TGG	0.223793	1.4:-86403952	MS.gene029301:CDS
AAGAGAAGGATGTGGTGACT+TGG	0.530012	1.4:-86404564	MS.gene029301:CDS
AAGCACGTTTGTTGTTGAAT+GGG	0.524243	1.4:-86404591	MS.gene029301:CDS
AAGGCAAAACATTGAGTCTG+AGG	0.581494	1.4:-86404365	MS.gene029301:CDS
ACACACAACCATGCCGTATG+GGG	0.612049	1.4:-86403641	MS.gene029301:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTTAAGTGCATCAT+TGG	+	chr1.4:86403446-86403465	None:intergenic	30.0%
AACATGTTAAGTGCATCATT+GGG	+	chr1.4:86403445-86403464	None:intergenic	30.0%
ACTTGGACAACTTTGATTAA+TGG	-	chr1.4:86404009-86404028	MS.gene029301:CDS	30.0%
AGGAATATGGTAAATGAAGT+GGG	-	chr1.4:86405095-86405114	MS.gene029301:CDS	30.0%
ATAATATCCTTGTCTTTGAG+AGG	+	chr1.4:86404600-86404619	None:intergenic	30.0%
ATTTGGACTGCAATAATTGA+TGG	-	chr1.4:86404621-86404640	MS.gene029301:CDS	30.0%
CATGTATAATGATCAACACT+AGG	+	chr1.4:86404825-86404844	None:intergenic	30.0%
CGTGGAATACTTTGATTAAT+GGG	-	chr1.4:86403707-86403726	MS.gene029301:CDS	30.0%
GATACATGAAAATGTTGAAC+TGG	-	chr1.4:86404959-86404978	MS.gene029301:CDS	30.0%
GATTAGGATGTATGTTCAAA+TGG	-	chr1.4:86403414-86403433	MS.gene029301:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	86403412	86405166	86403412	ID=MS.gene029301
chr1.4	mRNA	86403412	86405166	86403412	ID=MS.gene029301.t1;Parent=MS.gene029301
chr1.4	exon	86403412	86405166	86403412	ID=MS.gene029301.t1.exon1;Parent=MS.gene029301.t1
chr1.4	CDS	86403412	86405166	86403412	ID=cds.MS.gene029301.t1;Parent=MS.gene029301.t1

Gene Sequence

>MS.gene029301

ATGATTAGGATGTATGTTCAAATGGGCCGTCCCAATGATGCACTTAACATGTTTGTTGAAATGTTTCATTCGGGTCGGGCTATGCCGGATCACTTTACGTACCCGATCGTTATTAAGGCTTGTAGTGAGTTGTTGTTTGTTGATACGGGTGTTGGAGTTCATGGGCAGACTGTTAAGTGTGGGTTTGATTTGGACAGTTTTGTGCAGAATTCTTTGTTGGCAATGTATATGAATGTTGGGGAGAAAGAAGCGGCGCGGTTGGTTTTTGAGTTGATGCAGGAACGGACAGTTGTGTCGTGGAATACTTTGATTAATGGGTTGTTTCGGAATAACTGTGCGGAGGAGGCGTTGAGGGTTTATGGTAGAATGATGGATGAGGGTGTGGGAGTTGATTGTGCGACTGTGGTTTCGGTTTTGCAGGCTTGTGGGGTTTTAAAGAATGTGGTGCTTGGGAGAGAGGTTCGTGCGTTGGCTCTTGAGAAAGGGTTTTGGGGTAATGTGGTTGTTAGGAATGCATTGTTGGATCTGTATGTTAAGTGTGGTGAGATGGAGGAAGCACGTTTGTTGTTGAATGGGATGGAAGAGAAGGATGTGGTGACTTGGACAACTTTGATTAATGGATATGTTGTGAATGGTGATGCAAGAAGTGCTCTGATGTTGTGTCGAACAATGCAGTTGGAAGGAGTGAAACCGAATTTGGTTAGTGTAGCTTCTCTGCTATCGGGCTGTGGTGATTTGGTTTCTTTGAAACACGGTAAGTGCCTACATGCATGGGCAATAAGGCAAAACATTGAGTCTGAGGTAGTTGTGGAAACTGCCTTAATTGATATGTATGCCAAATGCAATGATGGCAACCTCAGTTATAAAGTGTTTATGAAAACCTCGAAGAAGAGAACGGCCCCATGGAACGCAGTCCTATCTGGGTTCGTACATAATAGGCTTGCTAGAAATGCAGTACAACTTTTCAAAAAAATGTTAGCAGAAAACGTACGACCCGACAGTCCAACCTTTAATAGTCTTCTTCCTGCATATGCTATTCTTGCTGACCTCAAACAAGCAATGAACATGCATTGTTACCTTGTAAAATTGGGATTTCTTTGCAAACTTGAAGTAGCTAGTATGCTAGTTGATATATACTCAAAGTGTGGAAGTTTAGGATATGCTCACCAGATTTTTGATACGATTCCTCTCAAAGACAAGGATATTATTATTTGGACTGCAATAATTGATGGTTATGGAAAGCATGGATACGGTAAAAGGGCTGTCTCACTTTTCAATCAGATGGTCCAATCTGGAGAAAAACCAAATGAAGTGACTTTCACCTCTGTTCTGCATGCTTGCAGCCATGCAGGTTTGGTTGATGAGGGTTTGTCTCTGTTCAATCTTATGCTTAAAAAATACCAAGTTATTCCTAGTGTTGATCATTATACATGCATAGTGGATCTTCTTGGCCGTGCTGGTCGACTGAATGATGCTTACAATCTTATTAGAACCATGCCTATTACACACAACCATGCCGTATGGGGTGCACTGCTTGGCGCCTGTGTGATACATGAAAATGTTGAACTGGGAGAGATAGCTGCTAGGTGGAGTTTTGAGCTTGAACCAGAAAACACGGGAAATTATGTTCTGTTAGCAAAACTTTATGCTGCTGTAGGAAGGTGGAGAGATGCAGAGAGAGTCAGGAATATGGTAAATGAAGTGGGACTACGAAAAACACCTGCTAACAGCTTAGTTGAGGTTAGCAATATGTGA

Protein sequence

>MS.gene029301.t1

MIRMYVQMGRPNDALNMFVEMFHSGRAMPDHFTYPIVIKACSELLFVDTGVGVHGQTVKCGFDLDSFVQNSLLAMYMNVGEKEAARLVFELMQERTVVSWNTLINGLFRNNCAEEALRVYGRMMDEGVGVDCATVVSVLQACGVLKNVVLGREVRALALEKGFWGNVVVRNALLDLYVKCGEMEEARLLLNGMEEKDVVTWTTLINGYVVNGDARSALMLCRTMQLEGVKPNLVSVASLLSGCGDLVSLKHGKCLHAWAIRQNIESEVVVETALIDMYAKCNDGNLSYKVFMKTSKKRTAPWNAVLSGFVHNRLARNAVQLFKKMLAENVRPDSPTFNSLLPAYAILADLKQAMNMHCYLVKLGFLCKLEVASMLVDIYSKCGSLGYAHQIFDTIPLKDKDIIIWTAIIDGYGKHGYGKRAVSLFNQMVQSGEKPNEVTFTSVLHACSHAGLVDEGLSLFNLMLKKYQVIPSVDHYTCIVDLLGRAGRLNDAYNLIRTMPITHNHAVWGALLGACVIHENVELGEIAARWSFELEPENTGNYVLLAKLYAAVGRWRDAERVRNMVNEVGLRKTPANSLVEVSNM