AlfalfaGEDB | MS.gene031256

M. sativa cultivar XinJiangDaYe / MS.gene031256

KEGG: K02979
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01200.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031256.t1	XP_004489433.1	100	65	0	0	1	65	1	65	3.00E-26	127.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031256.t1	P46302	90.8	65	6	0	1	65	1	65	1.4e-24	112.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031256.t1	Q2HWC2	100.0	65	0	0	1	65	1	65	2.1e-26	127.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene69814	MS.gene031256	PPI
MS.gene072782	MS.gene031256	PPI
MS.gene006754	MS.gene031256	PPI
MS.gene87285	MS.gene031256	PPI
MS.gene031254	MS.gene031256	PPI
MS.gene031549	MS.gene031256	PPI
MS.gene003693	MS.gene031256	PPI
MS.gene99823	MS.gene031256	PPI
MS.gene23314	MS.gene031256	PPI
MS.gene028153	MS.gene031256	PPI
MS.gene019309	MS.gene031256	PPI
MS.gene87287	MS.gene031256	PPI
MS.gene96825	MS.gene031256	PPI
MS.gene031256	MS.gene015586	PPI
MS.gene72768	MS.gene031256	PPI
MS.gene82426	MS.gene031256	PPI
MS.gene031256	MS.gene50744	PPI
MS.gene83444	MS.gene031256	PPI
MS.gene86059	MS.gene031256	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031256.t1	MTR_6g013210	100.000	65	0	0	1	65	1	65	8.41e-42	130
MS.gene031256.t1	MTR_4g081180	90.769	65	6	0	1	65	150	214	8.23e-36	119
MS.gene031256.t1	MTR_6g013410	81.538	65	11	1	1	65	38	101	4.19e-31	104
MS.gene031256.t1	MTR_8g089765	71.667	60	17	0	1	60	1	60	5.17e-25	89.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031256.t1	AT5G03850	90.769	65	5	1	1	65	1	64	1.28e-35	114
MS.gene031256.t1	AT3G10090	90.769	65	5	1	1	65	1	64	1.28e-35	114
MS.gene031256.t1	AT5G64140	89.231	65	6	1	1	65	1	64	1.09e-34	112

Find 20 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTGTTGTTGTGAAAGTTAT+GGG	0.420809	2.1:+18068713	MS.gene031256:CDS
AGGATGTCTCCCTCCCTAAC+TGG	0.425936	2.1:-18068824	None:intergenic
TGCTGTTGTTGTGAAAGTTA+TGG	0.441002	2.1:+18068712	MS.gene031256:CDS
TTATGGGTCGTACTGGATCC+AGG	0.451262	2.1:+18068729	MS.gene031256:CDS
AACCTGAGTGACTTGTCCCC+TGG	0.461687	2.1:-18068747	None:intergenic
GAATGTGAAGGGACCAGTTA+GGG	0.464736	2.1:+18068811	MS.gene031256:CDS
GGAATGTGAAGGGACCAGTT+AGG	0.473428	2.1:+18068810	MS.gene031256:CDS
TCTCAGACTCGAGGAGGGTA+AGG	0.488938	2.1:-18068844	None:intergenic
GTGAAAGTTATGGGTCGTAC+TGG	0.530087	2.1:+18068722	MS.gene031256:CDS
TGTGAAGGGACCAGTTAGGG+AGG	0.582336	2.1:+18068814	MS.gene031256:CDS
ATCAGAATCGTCACATCATG+AGG	0.584464	2.1:+18068789	MS.gene031256:CDS
TTGCTTCTCTCTCAGACTCG+AGG	0.586554	2.1:-18068853	None:intergenic
CTTCTCTCTCAGACTCGAGG+AGG	0.606831	2.1:-18068850	None:intergenic
TATGGGTCGTACTGGATCCA+GGG	0.613108	2.1:+18068730	MS.gene031256:CDS
TCACATCATGAGGAATGTGA+AGG	0.626309	2.1:+18068799	MS.gene031256:CDS
CACATCATGAGGAATGTGAA+GGG	0.632733	2.1:+18068800	MS.gene031256:CDS
ATCCAGGGGACAAGTCACTC+AGG	0.638739	2.1:+18068745	MS.gene031256:CDS
TTCTCTCTCAGACTCGAGGA+GGG	0.644799	2.1:-18068849	None:intergenic
GTGAAGGGACCAGTTAGGGA+GGG	0.647685	2.1:+18068815	MS.gene031256:CDS
ATGGGTCGTACTGGATCCAG+GGG	0.674814	2.1:+18068731	MS.gene031256:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	GCTGTTGTTGTGAAAGTTAT+GGG	+	chr2.1:18068713-18068732	MS.gene031256:CDS	35.0%
	TGCTGTTGTTGTGAAAGTTA+TGG	+	chr2.1:18068712-18068731	MS.gene031256:CDS	35.0%
!	TCAGGTTAGAGTGAAGTTTT+TGG	+	chr2.1:18068763-18068782	MS.gene031256:CDS	35.0%
	ATCAGAATCGTCACATCATG+AGG	+	chr2.1:18068789-18068808	MS.gene031256:CDS	40.0%
	CACATCATGAGGAATGTGAA+GGG	+	chr2.1:18068800-18068819	MS.gene031256:CDS	40.0%
	TCACATCATGAGGAATGTGA+AGG	+	chr2.1:18068799-18068818	MS.gene031256:CDS	40.0%
	GAATGTGAAGGGACCAGTTA+GGG	+	chr2.1:18068811-18068830	MS.gene031256:CDS	45.0%
	GTGAAAGTTATGGGTCGTAC+TGG	+	chr2.1:18068722-18068741	MS.gene031256:CDS	45.0%
	GGAATGTGAAGGGACCAGTT+AGG	+	chr2.1:18068810-18068829	MS.gene031256:CDS	50.0%
	TATGGGTCGTACTGGATCCA+GGG	+	chr2.1:18068730-18068749	MS.gene031256:CDS	50.0%
	TTATGGGTCGTACTGGATCC+AGG	+	chr2.1:18068729-18068748	MS.gene031256:CDS	50.0%
	TTCTCTCTCAGACTCGAGGA+GGG	-	chr2.1:18068852-18068871	None:intergenic	50.0%
	TTGCTTCTCTCTCAGACTCG+AGG	-	chr2.1:18068856-18068875	None:intergenic	50.0%
	AGGATGTCTCCCTCCCTAAC+TGG	-	chr2.1:18068827-18068846	None:intergenic	55.0%
	ATCCAGGGGACAAGTCACTC+AGG	+	chr2.1:18068745-18068764	MS.gene031256:CDS	55.0%
	ATGGGTCGTACTGGATCCAG+GGG	+	chr2.1:18068731-18068750	MS.gene031256:CDS	55.0%
	CTTCTCTCTCAGACTCGAGG+AGG	-	chr2.1:18068853-18068872	None:intergenic	55.0%
	GTGAAGGGACCAGTTAGGGA+GGG	+	chr2.1:18068815-18068834	MS.gene031256:CDS	55.0%
	TCTCAGACTCGAGGAGGGTA+AGG	-	chr2.1:18068847-18068866	None:intergenic	55.0%
	TGTGAAGGGACCAGTTAGGG+AGG	+	chr2.1:18068814-18068833	MS.gene031256:CDS	55.0%
!	AACCTGAGTGACTTGTCCCC+TGG	-	chr2.1:18068750-18068769	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	18068692	18068889	18068692	ID=MS.gene031256
chr2.1	mRNA	18068692	18068889	18068692	ID=MS.gene031256.t1;Parent=MS.gene031256
chr2.1	exon	18068692	18068889	18068692	ID=MS.gene031256.t1.exon1;Parent=MS.gene031256.t1
chr2.1	CDS	18068692	18068889	18068692	ID=cds.MS.gene031256.t1;Parent=MS.gene031256.t1

Gene Sequence	>MS.gene031256 ATGGAATCACAGATTAAGCATGCTGTTGTTGTGAAAGTTATGGGTCGTACTGGATCCAGGGGACAAGTCACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAATCGTCACATCATGAGGAATGTGAAGGGACCAGTTAGGGAGGGAGACATCCTTACCCTCCTCGAGTCTGAGAGAGAAGCAAGAAGACTCCGATAG
Protein sequence	>MS.gene031256.t1 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR