Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69814.t1 | XP_004489433.1 | 100 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 3.00E-26 | 127.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69814.t1 | P46302 | 90.8 | 65 | 6 | 0 | 1 | 65 | 1 | 65 | 1.4e-24 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69814.t1 | Q2HWC2 | 100.0 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 2.1e-26 | 127.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050916 | MS.gene69814 | 0.805415 | 1.35E-49 | -1.69E-46 |
| MS.gene056257 | MS.gene69814 | 0.811646 | 6.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69814 | MS.gene72768 | PPI |
| MS.gene69814 | MS.gene031256 | PPI |
| MS.gene028153 | MS.gene69814 | PPI |
| MS.gene87287 | MS.gene69814 | PPI |
| MS.gene69814 | MS.gene96825 | PPI |
| MS.gene69814 | MS.gene23314 | PPI |
| MS.gene69814 | MS.gene82426 | PPI |
| MS.gene69814 | MS.gene019309 | PPI |
| MS.gene69814 | MS.gene99823 | PPI |
| MS.gene69814 | MS.gene006754 | PPI |
| MS.gene69814 | MS.gene86059 | PPI |
| MS.gene69814 | MS.gene83444 | PPI |
| MS.gene69814 | MS.gene015586 | PPI |
| MS.gene87285 | MS.gene69814 | PPI |
| MS.gene031254 | MS.gene69814 | PPI |
| MS.gene031549 | MS.gene69814 | PPI |
| MS.gene69814 | MS.gene50744 | PPI |
| MS.gene69814 | MS.gene072782 | PPI |
| MS.gene003693 | MS.gene69814 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69814.t1 | MTR_6g013210 | 100.000 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 8.41e-42 | 130 |
| MS.gene69814.t1 | MTR_4g081180 | 90.769 | 65 | 6 | 0 | 1 | 65 | 150 | 214 | 8.23e-36 | 119 |
| MS.gene69814.t1 | MTR_6g013410 | 81.538 | 65 | 11 | 1 | 1 | 65 | 38 | 101 | 4.19e-31 | 104 |
| MS.gene69814.t1 | MTR_8g089765 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 5.17e-25 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69814.t1 | AT5G03850 | 90.769 | 65 | 5 | 1 | 1 | 65 | 1 | 64 | 1.28e-35 | 114 |
| MS.gene69814.t1 | AT3G10090 | 90.769 | 65 | 5 | 1 | 1 | 65 | 1 | 64 | 1.28e-35 | 114 |
| MS.gene69814.t1 | AT5G64140 | 89.231 | 65 | 6 | 1 | 1 | 65 | 1 | 64 | 1.09e-34 | 112 |
Find 20 sgRNAs with CRISPR-Local
Find 21 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTTGTTGTGAAAGTTAT+GGG | 0.420809 | 2.4:+16352854 | MS.gene69814:CDS |
| AGGATGTCTCCCTCCCTAAC+TGG | 0.425936 | 2.4:-16352965 | None:intergenic |
| TGCTGTTGTTGTGAAAGTTA+TGG | 0.441002 | 2.4:+16352853 | MS.gene69814:CDS |
| TTATGGGTCGTACTGGATCC+AGG | 0.451262 | 2.4:+16352870 | MS.gene69814:CDS |
| AACCTGAGTGACTTGTCCCC+TGG | 0.461687 | 2.4:-16352888 | None:intergenic |
| GAATGTGAAGGGACCAGTTA+GGG | 0.464736 | 2.4:+16352952 | MS.gene69814:CDS |
| GGAATGTGAAGGGACCAGTT+AGG | 0.473428 | 2.4:+16352951 | MS.gene69814:CDS |
| TCTCAGACTCGAGGAGGGTA+AGG | 0.488938 | 2.4:-16352985 | None:intergenic |
| GTGAAAGTTATGGGTCGTAC+TGG | 0.530087 | 2.4:+16352863 | MS.gene69814:CDS |
| TGTGAAGGGACCAGTTAGGG+AGG | 0.582336 | 2.4:+16352955 | MS.gene69814:CDS |
| ATCAGAATCGTCACATCATG+AGG | 0.584464 | 2.4:+16352930 | MS.gene69814:CDS |
| TTGCTTCTCTCTCAGACTCG+AGG | 0.586554 | 2.4:-16352994 | None:intergenic |
| CTTCTCTCTCAGACTCGAGG+AGG | 0.606831 | 2.4:-16352991 | None:intergenic |
| TATGGGTCGTACTGGATCCA+GGG | 0.613108 | 2.4:+16352871 | MS.gene69814:CDS |
| TCACATCATGAGGAATGTGA+AGG | 0.626309 | 2.4:+16352940 | MS.gene69814:CDS |
| CACATCATGAGGAATGTGAA+GGG | 0.632733 | 2.4:+16352941 | MS.gene69814:CDS |
| ATCCAGGGGACAAGTCACTC+AGG | 0.638739 | 2.4:+16352886 | MS.gene69814:CDS |
| TTCTCTCTCAGACTCGAGGA+GGG | 0.644799 | 2.4:-16352990 | None:intergenic |
| GTGAAGGGACCAGTTAGGGA+GGG | 0.647685 | 2.4:+16352956 | MS.gene69814:CDS |
| ATGGGTCGTACTGGATCCAG+GGG | 0.674814 | 2.4:+16352872 | MS.gene69814:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GCTGTTGTTGTGAAAGTTAT+GGG | + | chr2.4:16352854-16352873 | MS.gene69814:CDS | 35.0% | |
| TGCTGTTGTTGTGAAAGTTA+TGG | + | chr2.4:16352853-16352872 | MS.gene69814:CDS | 35.0% | |
| ! | TCAGGTTAGAGTGAAGTTTT+TGG | + | chr2.4:16352904-16352923 | MS.gene69814:CDS | 35.0% |
| ATCAGAATCGTCACATCATG+AGG | + | chr2.4:16352930-16352949 | MS.gene69814:CDS | 40.0% | |
| CACATCATGAGGAATGTGAA+GGG | + | chr2.4:16352941-16352960 | MS.gene69814:CDS | 40.0% | |
| TCACATCATGAGGAATGTGA+AGG | + | chr2.4:16352940-16352959 | MS.gene69814:CDS | 40.0% | |
| GAATGTGAAGGGACCAGTTA+GGG | + | chr2.4:16352952-16352971 | MS.gene69814:CDS | 45.0% | |
| GTGAAAGTTATGGGTCGTAC+TGG | + | chr2.4:16352863-16352882 | MS.gene69814:CDS | 45.0% | |
| GGAATGTGAAGGGACCAGTT+AGG | + | chr2.4:16352951-16352970 | MS.gene69814:CDS | 50.0% | |
| TATGGGTCGTACTGGATCCA+GGG | + | chr2.4:16352871-16352890 | MS.gene69814:CDS | 50.0% | |
| TTATGGGTCGTACTGGATCC+AGG | + | chr2.4:16352870-16352889 | MS.gene69814:CDS | 50.0% | |
| TTCTCTCTCAGACTCGAGGA+GGG | - | chr2.4:16352993-16353012 | None:intergenic | 50.0% | |
| TTGCTTCTCTCTCAGACTCG+AGG | - | chr2.4:16352997-16353016 | None:intergenic | 50.0% | |
| AGGATGTCTCCCTCCCTAAC+TGG | - | chr2.4:16352968-16352987 | None:intergenic | 55.0% | |
| ATCCAGGGGACAAGTCACTC+AGG | + | chr2.4:16352886-16352905 | MS.gene69814:CDS | 55.0% | |
| ATGGGTCGTACTGGATCCAG+GGG | + | chr2.4:16352872-16352891 | MS.gene69814:CDS | 55.0% | |
| CTTCTCTCTCAGACTCGAGG+AGG | - | chr2.4:16352994-16353013 | None:intergenic | 55.0% | |
| GTGAAGGGACCAGTTAGGGA+GGG | + | chr2.4:16352956-16352975 | MS.gene69814:CDS | 55.0% | |
| TCTCAGACTCGAGGAGGGTA+AGG | - | chr2.4:16352988-16353007 | None:intergenic | 55.0% | |
| TGTGAAGGGACCAGTTAGGG+AGG | + | chr2.4:16352955-16352974 | MS.gene69814:CDS | 55.0% | |
| ! | AACCTGAGTGACTTGTCCCC+TGG | - | chr2.4:16352891-16352910 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 16352833 | 16353030 | 16352833 | ID=MS.gene69814 |
| chr2.4 | mRNA | 16352833 | 16353030 | 16352833 | ID=MS.gene69814.t1;Parent=MS.gene69814 |
| chr2.4 | exon | 16352833 | 16353030 | 16352833 | ID=MS.gene69814.t1.exon1;Parent=MS.gene69814.t1 |
| chr2.4 | CDS | 16352833 | 16353030 | 16352833 | ID=cds.MS.gene69814.t1;Parent=MS.gene69814.t1 |
| Gene Sequence |
| Protein sequence |